Psyllid ID: psy12136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MFKANVSDTEQPIVIPIRKIASGGSVKLEPQSFPRPTSPVDSEKFSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLSS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEEcccccccccccccccEEEEEEEcccccccEEEcccEEcccccEEccEEEEccccccHHcccEEEEEEEEcccccccccEEEEEEcccccccccccEEEEcccccccccccccccccccccccEEEEEEEEEccccEEEEEEEccccccccccccccccEEEEEEEccccEEEEcccccccccccccccEEEEEcccccccccEEEEEEEEccccccccEEEEEEEcccccHHHHHHHHHHHHcccccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccccccccccccccccccccccEccccccccccccccccccccccccccccEEEcccccccccccccccccccccccHHccccHHHccccccccHHHcccccccccccEEEEEEEEccccccEEEEEEEEccccccccccccccEEEEEEcccccccccEcEEEEccccccccccEEEEccccHHHHcccEEEEEEEEcccccccccEEEEEEccccccccccHHHHcccccccccccccccccccccccccEEEEEEEccccccEEEEEEEEHHHHHcccccccccEEEEEEccccccccEEccccccccccEEEEEEEEcccHHHHcccEEEEEEEEcccccccEEEEEEEEEHHHcccccHHHHHHHHcccccHHHHcccccccccc
Coil and Loop (DISEMBL)
mfkanvsdteqpivipirkiasggsvklepqsfprptspvdsekfsssatvrssplmsrhtlpltvnensispvsplspicngnfntqqessgtlkrgviteekeyfvtsqadtnlgsiELTVTYDSTTCSLHVTLHRakglramdihgtsdpfcklnlvpltktshrlrtktclrtinpefhekltfysvsetdlslQSLHILvldddkyghdflgearfplnrlrphisrDLCLNlckhypvpreeevwgeeecwQHGKIFLTLCFSTKKRALIVNLIkctnlipmdsngfsdpfiklylkpdlhkrkyktgvkwktlnpifneEFAIETKITELSKQTLVITVWdkdygksndylGCLElccnskgdrlRHWVdmmkypdhkhegihnlsikplss
Flexible Loop (DISEMBL)
mfkanvsdteqpivipirkiasggsvklepqsfprptspvdsekfsssatvrssplmsRHTLPLTVNENSISPVSPLSPICNGNfntqqessgtlKRGVITEEKEYFvtsqadtnlgsIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGtsdpfcklnlvpltktshrlrtktclrtinpefheKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEArfplnrlrpHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETkitelskqtLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKypdhkhegihnlsikplss
Low Complexity Region (SEG)
MFKANVSDTEQPIVIPIRKIASGGSVKLEPQSFPRPTSPVDSEKFSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPReeevwgeeeCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLSS
Disordered region (IsUnstruct)
**************I**********************************************************************************GVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD****************
Disordered Region (DISOPRED)
*********************************************************************************************************************SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT**R*RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYP*****************KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL*******GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN*SIK****
Disordered Region (DISEMBL)
********TEQPIVIPIRKIASGGSV******************************MSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLSS
Disordered Region (DISPRO)
********TEQPIVIPIR*********LEPQSFPRPTSPVDSEKFSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESS***KR*************QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPV************WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFKANVSDTEQPIVIPIRKIASGGSVKLEPQSFPRPTSPVDSEKFSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	399	2.2.26 [Sep-21-2011]
P70610	412	Double C2-like domain-con	yes	N/A	0.691	0.669	0.443	1e-67
P70169	412	Double C2-like domain-con	yes	N/A	0.691	0.669	0.443	3e-67
Q06846	704	Rabphilin-3A OS=Bos tauru	no	N/A	0.709	0.401	0.428	3e-66
Q14184	412	Double C2-like domain-con	yes	N/A	0.691	0.669	0.432	2e-65
Q9Y2J0	694	Rabphilin-3A OS=Homo sapi	no	N/A	0.709	0.407	0.424	2e-65
P47709	684	Rabphilin-3A OS=Rattus no	no	N/A	0.709	0.413	0.424	4e-65
P47708	681	Rabphilin-3A OS=Mus muscu	no	N/A	0.709	0.415	0.424	7e-65
Q14183	400	Double C2-like domain-con	no	N/A	0.696	0.695	0.397	4e-61
P70611	403	Double C2-like domain-con	no	N/A	0.711	0.704	0.388	1e-59
Q7TNF0	405	Double C2-like domain-con	no	N/A	0.711	0.701	0.388	2e-59

>sp|P70610|DOC2B_RAT Double C2-like domain-containing protein beta OS=Rattus norvegicus GN=Doc2b PE=1 SV=2

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/282 (44%), Positives = 196/282 (69%), Gaps = 6/282 (2%)

Query: 114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 173
           T LG+++ ++ YD    +LH T+ +AKGL+ MD +G +DP+ KL+L+P    +++LRTKT
Sbjct: 125 TALGTLDFSLLYDQENNALHCTISKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKT 184

Query: 174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR 232
              T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++
Sbjct: 185 LRNTLNPSWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTK 244

Query: 233 DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 292
              + L K  PV + E+   EE     G+I ++L +S++K+ L+V +++C +L  MD+NG
Sbjct: 245 TFSICLEKQLPVDKAEDKSLEE----RGRILISLKYSSQKQGLLVGIVRCAHLAAMDANG 300

Query: 293 FSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351
           +SDP++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TVWD D 
Sbjct: 301 YSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDI 360

Query: 352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
           GKSND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct: 361 GKSNDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402

Calcium sensor which positively regulates SNARE-dependent fusion of vesicles with membranes. Binds phospholipids in a calcium-dependent manner and may act at the priming stage of fusion by modifying membrane curvature to stimulate fusion. Involved in calcium-triggered exocytosis in chromaffin cells and calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Involved both in glucose-stimulated insulin secretion in pancreatic cells and insulin-dependent GLUT4 transport to the plasma membrane in adipocytes.
Rattus norvegicus (taxid: 10116)

>sp|P70169|DOC2B_MOUSE Double C2-like domain-containing protein beta OS=Mus musculus GN=Doc2b PE=1 SV=2

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/282 (44%), Positives = 196/282 (69%), Gaps = 6/282 (2%)

Query: 114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 173
           T LG+++ ++ YD    +LH T+ +AKGL+ MD +G +DP+ KL+L+P    +++LRTKT
Sbjct: 125 TALGTLDFSLLYDQENNALHCTISKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKT 184

Query: 174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR 232
              T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++
Sbjct: 185 LRNTLNPSWNETLTYYGITDEDMVRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTK 244

Query: 233 DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 292
              + L K  PV + E+   EE     G+I ++L +S++K+ L+V +++C +L  MD+NG
Sbjct: 245 TFSICLEKQLPVDKAEDKSLEE----RGRILISLKYSSQKQGLLVGIVRCAHLAAMDANG 300

Query: 293 FSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351
           +SDP++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TVWD D 
Sbjct: 301 YSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDI 360

Query: 352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
           GKSND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct: 361 GKSNDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402

Calcium sensor which positively regulates SNARE-dependent fusion of vesicles with membranes. Binds phospholipids in a calcium-dependent manner and may act at the priming stage of fusion by modifying membrane curvature to stimulate fusion. Involved in calcium-triggered exocytosis in chromaffin cells and calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Involved both in glucose-stimulated insulin secretion in pancreatic cells and insulin-dependent GLUT4 transport to the plasma membrane in adipocytes.

Mus musculus (taxid: 10090)

>sp|Q06846|RP3A_BOVIN Rabphilin-3A OS=Bos taurus GN=RPH3A PE=1 SV=1

 Score =  252 bits (644), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 128/299 (42%), Positives = 198/299 (66%), Gaps = 16/299 (5%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
           S   T LG++E ++ YD    SLH T+ +AKGL+ MD +G +DP+ KL+L+P    S++L
Sbjct: 397 SDEATTLGALEFSLLYDQDNSSLHCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 456

Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228
           RTKT   T NP ++E L ++ +++ D+  ++L I V D+DK+GH +F+GE RF L +L+P
Sbjct: 457 RTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKP 516

Query: 229 HISRDLCLNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRA 274
           +  ++  + L +  P+ R              EE+V    +  + GKI ++L +ST++  
Sbjct: 517 NQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGG 576

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETK 333
           LIV +I+C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF  + K
Sbjct: 577 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 636

Query: 334 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 392
            ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + +K  D K E  H L
Sbjct: 637 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 695

Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal.

Bos taurus (taxid: 9913)

>sp|Q14184|DOC2B_HUMAN Double C2-like domain-containing protein beta OS=Homo sapiens GN=DOC2B PE=1 SV=1

 Score =  249 bits (637), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/282 (43%), Positives = 196/282 (69%), Gaps = 6/282 (2%)

Query: 114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 173
           T LG+++ ++ YD    +LH T+ +AKGL+ MD +G +DP+ KL+L+P    +++LRTKT
Sbjct: 125 TALGTLDFSLLYDQENNALHCTITKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKT 184

Query: 174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR 232
              T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++
Sbjct: 185 LRNTLNPTWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTK 244

Query: 233 DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 292
              + L K  PV + E+   EE     G+I ++L +S++K+ L+V +++C +L  MD+NG
Sbjct: 245 TFNICLEKQLPVDKTEDKSLEE----RGRILISLKYSSQKQGLLVGIVRCAHLAAMDANG 300

Query: 293 FSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351
           +SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K++L +TVWD D 
Sbjct: 301 YSDPYVKTYLRPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKSLEVTVWDYDI 360

Query: 352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
           GKSND++G + L  ++KG+RL+HW D +K  D + E  H L+
Sbjct: 361 GKSNDFIGGVVLGIHAKGERLKHWFDCLKNKDKRIERWHTLT 402

Calcium sensor which positively regulates SNARE-dependent fusion of vesicles with membranes. Binds phospholipids in a calcium-dependent manner and may act at the priming stage of fusion by modifying membrane curvature to stimulate fusion. Involved in calcium-triggered exocytosis in chromaffin cells and calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Involved both in glucose-stimulated insulin secretion in pancreatic cells and insulin-dependent GLUT4 transport to the plasma membrane in adipocytes.

Homo sapiens (taxid: 9606)

>sp|Q9Y2J0|RP3A_HUMAN Rabphilin-3A OS=Homo sapiens GN=RPH3A PE=1 SV=1

 Score =  249 bits (637), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 197/299 (65%), Gaps = 16/299 (5%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
           S   T LG++E ++ YD    SL  T+ +AKGL+ MD +G +DP+ KL+L+P    S++L
Sbjct: 387 SDEATTLGALEFSLLYDQDNSSLQCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 446

Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228
           RTKT   T NP ++E L ++ +++ D+  ++L I V D+DK+GH +F+GE RF L +L+P
Sbjct: 447 RTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKP 506

Query: 229 HISRDLCLNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRA 274
           +  ++  + L +  P+ R              EE+V    +  + GKI ++L +ST++  
Sbjct: 507 NQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERVGDIEERGKILVSLMYSTQQGG 566

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETK 333
           LIV +I+C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF  + K
Sbjct: 567 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 626

Query: 334 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 392
            ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + +K  D K E  H L
Sbjct: 627 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 685

Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal.

Homo sapiens (taxid: 9606)

>sp|P47709|RP3A_RAT Rabphilin-3A OS=Rattus norvegicus GN=Rph3a PE=1 SV=1

 Score =  248 bits (634), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 196/299 (65%), Gaps = 16/299 (5%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
           S   T LG++E ++ YD    +L  T+ RAKGL+ MD +G +DP+ KL+L+P    S++L
Sbjct: 377 SDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 436

Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228
           RTKT   T NP ++E L ++ ++E D+  ++L I V D+DK+GH +F+GE RF L +L+ 
Sbjct: 437 RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 496

Query: 229 HISRDLCLNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRA 274
           +  ++  + L +  P+ R              EE+V    +  + GKI ++L +ST++  
Sbjct: 497 NQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGG 556

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETK 333
           LIV +I+C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF  + K
Sbjct: 557 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 616

Query: 334 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 392
            ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + +K  D K E  H L
Sbjct: 617 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 675

Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal.

Rattus norvegicus (taxid: 10116)

>sp|P47708|RP3A_MOUSE Rabphilin-3A OS=Mus musculus GN=Rph3a PE=1 SV=2

 Score =  248 bits (633), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 196/299 (65%), Gaps = 16/299 (5%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
           S   T LG++E ++ YD    +L  T+ RAKGL+ MD +G +DP+ KL+L+P    S++L
Sbjct: 374 SDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 433

Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228
           RTKT   T NP ++E L ++ ++E D+  ++L I V D+DK+GH +F+GE RF L +L+ 
Sbjct: 434 RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 493

Query: 229 HISRDLCLNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRA 274
           +  ++  + L +  P+ R              EE+V    +  + GKI ++L +ST++  
Sbjct: 494 NQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGG 553

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETK 333
           LIV +I+C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF  + K
Sbjct: 554 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 613

Query: 334 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 392
            ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + +K  D K E  H L
Sbjct: 614 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 672

Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal.

Mus musculus (taxid: 10090)

>sp|Q14183|DOC2A_HUMAN Double C2-like domain-containing protein alpha OS=Homo sapiens GN=DOC2A PE=1 SV=5

 Score =  235 bits (600), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 120/302 (39%), Positives = 190/302 (62%), Gaps = 24/302 (7%)

Query: 114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 173
           T LG++E  + YD  +C+LH ++ RAKGL+ MD +G +DP+ KL+L+P    +++L+TKT
Sbjct: 88  TALGTLEFDLLYDRASCTLHCSILRAKGLKPMDFNGLADPYVKLHLLPGACKANKLKTKT 147

Query: 174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR 232
              T+NP ++E LT+  +++ D++ + L I V D+DK  H +F+GE R PL RL+P  S+
Sbjct: 148 QRNTLNPVWNEDLTYSGITDDDITHKVLRIAVCDEDKLSHNEFIGEIRVPLRRLKP--SQ 205

Query: 233 DLCLNLCKHYPVP--------------------REEEVWGEEECWQHGKIFLTLCFSTKK 272
               N+C    VP                     E+   G+    + G+I L+L +S+++
Sbjct: 206 KKHFNICLERQVPLASPSSMSAALRGISCYLKELEQAEQGQGLLEERGRILLSLSYSSRR 265

Query: 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIE 331
           R L+V +++C +L  MD NG+SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF  E
Sbjct: 266 RGLLVGILRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFFYE 325

Query: 332 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN 391
            +++ L+ +TL +TVWD D GKSND++G + L   ++G+  +HW D ++ PD   E  H 
Sbjct: 326 IELSTLATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEARKHWSDCLQQPDAALERWHT 385

Query: 392 LS 393
           L+
Sbjct: 386 LT 387

Calcium sensor which most probably regulates fusion of vesicles with membranes. Binds calcium and phospholipids. May be involved in calcium dependent neurotransmitter release through the interaction with UNC13A. May be involved in calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Regulates Ca(2+)-dependent secretory lysosome exocytosis in mast cells.

Homo sapiens (taxid: 9606)

>sp|P70611|DOC2A_RAT Double C2-like domain-containing protein alpha OS=Rattus norvegicus GN=Doc2a PE=1 SV=1

 Score =  230 bits (586), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 187/304 (61%), Gaps = 20/304 (6%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
           S   T LG++E  + YD  +C LH  + RAKGL+ MD +G +DP+ KL+L+P    +++L
Sbjct: 87  SDDTTALGTLEFDLLYDQASCMLHCRILRAKGLKPMDFNGLADPYVKLHLLPGACKANKL 146

Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228
           +TKT   T+NP ++E+LT+  +++ D++ + L I V D+DK  H +F+GE R PL RL+P
Sbjct: 147 KTKTQRNTLNPVWNEELTYSGITDDDITHKVLRISVCDEDKLSHNEFIGEIRVPLRRLKP 206

Query: 229 HISRDLCLNLCKHYPVPR------------------EEEVWGEEECWQHGKIFLTLCFST 270
              +   + L +  P+P                   E+   G     + G+I L+L +S+
Sbjct: 207 SQKKHFNICLERQVPLPSPSSMSAALRGISCYLKELEQAEQGPGLLEERGRILLSLSYSS 266

Query: 271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFA 329
           ++  L+V +++C +L  MD NG+SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF 
Sbjct: 267 RRHGLLVGIVRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFF 326

Query: 330 IETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGI 389
            E +++ L+ +TL +TVWD D GKSND++G + L   ++G+  +HW D +  PD   E  
Sbjct: 327 YEMELSTLATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEAQKHWRDCLHQPDTAVERW 386

Query: 390 HNLS 393
           H L+
Sbjct: 387 HTLT 390

Calcium sensor which most probably regulates fusion of vesicles with membranes. Binds calcium and phospholipids. May be involved in calcium dependent neurotransmitter release through the interaction with UNC13A. May be involved in calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Regulates Ca(2+)-dependent secretory lysosome exocytosis in mast cells.

Rattus norvegicus (taxid: 10116)

>sp|Q7TNF0|DOC2A_MOUSE Double C2-like domain-containing protein alpha OS=Mus musculus GN=Doc2a PE=2 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 187/304 (61%), Gaps = 20/304 (6%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
           S   T LG++E  + YD  +C LH  + RAKGL+ MD +G +DP+ KL+L+P    +++L
Sbjct: 89  SDDTTALGTLEFDLLYDQASCMLHCRILRAKGLKPMDFNGLADPYVKLHLLPGACKANKL 148

Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228
           +TKT   T+NP ++E+LT+  +++ D++ + L I V D+DK  H +F+GE R PL RL+P
Sbjct: 149 KTKTQRNTLNPVWNEELTYSGITDDDITHKVLRISVCDEDKLSHNEFIGEIRVPLRRLKP 208

Query: 229 HISRDLCLNLCKHYPVPR------------------EEEVWGEEECWQHGKIFLTLCFST 270
              +   + L +  P+P                   E+   G     + G+I L+L +S+
Sbjct: 209 SQKKHFNICLERQVPLPSPSSMSAALRGISCYLKELEQAEQGPGLLEERGRILLSLSYSS 268

Query: 271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFA 329
           ++  L+V +++C +L  MD NG+SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF 
Sbjct: 269 RRHGLLVGIVRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFF 328

Query: 330 IETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGI 389
            E +++ L+ +TL +TVWD D GKSND++G + L   ++G+  +HW D +  PD   E  
Sbjct: 329 YEIELSTLATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEAQKHWNDCLHQPDTALERW 388

Query: 390 HNLS 393
           H L+
Sbjct: 389 HTLT 392

Calcium sensor which most probably regulates fusion of vesicles with membranes. Binds calcium and phospholipids. May be involved in calcium dependent neurotransmitter release through the interaction with UNC13A. May be involved in calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Regulates Ca(2+)-dependent secretory lysosome exocytosis in mast cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
242009815	1048	hypothetical protein Phum_PHUM215280 [Pe	0.686	0.261	0.610	2e-99
91085005	550	PREDICTED: similar to Rabphilin CG11556-	0.706	0.512	0.552	3e-85
270009022	527	hypothetical protein TcasGA2_TC015653 [T	0.706	0.535	0.552	4e-85
350399907	795	PREDICTED: rabphilin-3A-like [Bombus imp	0.694	0.348	0.493	2e-80
340712605	795	PREDICTED: rabphilin-3A-like [Bombus ter	0.694	0.348	0.493	2e-80
332021420	811	Double C2-like domain-containing protein	0.696	0.342	0.480	3e-75
380013005	792	PREDICTED: uncharacterized protein LOC10	0.694	0.349	0.470	5e-75
383849326	800	PREDICTED: uncharacterized protein LOC10	0.706	0.352	0.469	3e-74
357623787	560	hypothetical protein KGM_09272 [Danaus p	0.671	0.478	0.484	5e-73
405977354	638	Double C2-like domain-containing protein	0.729	0.456	0.456	8e-73

>gi|242009815|ref|XP_002425678.1| hypothetical protein Phum_PHUM215280 [Pediculus humanus corporis] gi|212509571|gb|EEB12940.1| hypothetical protein Phum_PHUM215280 [Pediculus humanus corporis]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 168/275 (61%), Positives = 217/275 (78%), Gaps = 1/275 (0%)

Query: 113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTK 172
           +  LG++E+++ YD    +LH TLHR KGLRA DI+G +DPFCKLN++P   TS RL+TK
Sbjct: 565 NAQLGTLEISLWYDPVRSALHCTLHRGKGLRATDINGLADPFCKLNILPTNATSFRLKTK 624

Query: 173 TCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISR 232
           T  +TINPEF+E + FY ++E D+  ++LHILVLDDDKYG+DFLGEAR PL R+    ++
Sbjct: 625 TVHKTINPEFNETVNFYGITEMDIQKKTLHILVLDDDKYGNDFLGEARIPLFRVGAKQTK 684

Query: 233 DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 292
            + + L KHY V  E +VWGE+  W  GKI +TLC+STKKRALIV + +CTNL+PMD+NG
Sbjct: 685 HITVFLEKHYQVDDENKVWGEDN-WNRGKILITLCYSTKKRALIVVIGRCTNLLPMDNNG 743

Query: 293 FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352
            SDPF+KL+L  D + +KYKT VKWK LNP+FNEEF  ETK+T+L KQTL++TVWDKDYG
Sbjct: 744 LSDPFVKLHLSSDPNHKKYKTSVKWKNLNPVFNEEFVFETKMTDLPKQTLILTVWDKDYG 803

Query: 353 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 387
           KSNDYLG LEL   SKG+RL+HW+D++K+PDHKHE
Sbjct: 804 KSNDYLGGLELGWKSKGERLKHWIDVIKFPDHKHE 838

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085005|ref|XP_973334.1| PREDICTED: similar to Rabphilin CG11556-PA [Tribolium castaneum]

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 159/288 (55%), Positives = 213/288 (73%), Gaps = 6/288 (2%)

Query: 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 171
           +D +LG+IEL++TYD  T +LH T++RAK L  MDI+G SDPFCKLN++P  K S RLRT
Sbjct: 258 SDHSLGTIELSLTYDPITSTLHCTVYRAKNLIPMDINGLSDPFCKLNILPNAKPSTRLRT 317

Query: 172 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPH-- 229
           KT  +T NPEF+E LTFY +SE+DLS ++LH+LV+DDDK+GHD++GE R  L +L+    
Sbjct: 318 KTVHKTRNPEFNENLTFYDISESDLSKKALHVLVVDDDKFGHDYMGETRIGLAKLKQQNT 377

Query: 230 ISRDLCLNLCKHY---PVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLI 286
           I     L   +H    P+P  E     ++ W  G+I L+LC+STK+RAL+V + +C NL+
Sbjct: 378 IYVAASLEEMRHEQKGPLPAPELNQWFDDLWSRGQILLSLCYSTKRRALLVMVCRCANLL 437

Query: 287 PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 346
           PMD+NGFSDPF+KL L+PD   RK+KT +KWK LNP++NEEFA ET+ TEL+ Q+L ITV
Sbjct: 438 PMDNNGFSDPFVKLQLRPDPCHRKHKTSIKWKNLNPVYNEEFAFETRPTELATQSLYITV 497

Query: 347 WDKDYGKSNDY-LGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
           +DKDYGKSNDY  G +     SKG RL+ W+DM++YPDH+HE  HNL+
Sbjct: 498 YDKDYGKSNDYLGGLILGGTGSKGLRLKQWLDMIRYPDHRHEAWHNLT 545

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009022|gb|EFA05470.1| hypothetical protein TcasGA2_TC015653 [Tribolium castaneum]

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 159/288 (55%), Positives = 213/288 (73%), Gaps = 6/288 (2%)

Query: 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 171
           +D +LG+IEL++TYD  T +LH T++RAK L  MDI+G SDPFCKLN++P  K S RLRT
Sbjct: 235 SDHSLGTIELSLTYDPITSTLHCTVYRAKNLIPMDINGLSDPFCKLNILPNAKPSTRLRT 294

Query: 172 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPH-- 229
           KT  +T NPEF+E LTFY +SE+DLS ++LH+LV+DDDK+GHD++GE R  L +L+    
Sbjct: 295 KTVHKTRNPEFNENLTFYDISESDLSKKALHVLVVDDDKFGHDYMGETRIGLAKLKQQNT 354

Query: 230 ISRDLCLNLCKHY---PVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLI 286
           I     L   +H    P+P  E     ++ W  G+I L+LC+STK+RAL+V + +C NL+
Sbjct: 355 IYVAASLEEMRHEQKGPLPAPELNQWFDDLWSRGQILLSLCYSTKRRALLVMVCRCANLL 414

Query: 287 PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 346
           PMD+NGFSDPF+KL L+PD   RK+KT +KWK LNP++NEEFA ET+ TEL+ Q+L ITV
Sbjct: 415 PMDNNGFSDPFVKLQLRPDPCHRKHKTSIKWKNLNPVYNEEFAFETRPTELATQSLYITV 474

Query: 347 WDKDYGKSNDY-LGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
           +DKDYGKSNDY  G +     SKG RL+ W+DM++YPDH+HE  HNL+
Sbjct: 475 YDKDYGKSNDYLGGLILGGTGSKGLRLKQWLDMIRYPDHRHEAWHNLT 522

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399907|ref|XP_003485677.1| PREDICTED: rabphilin-3A-like [Bombus impatiens]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 152/308 (49%), Positives = 203/308 (65%), Gaps = 31/308 (10%)

Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP--LTKTSHRLRTK 172
           N G++E+T+ YD TT  L   + RA+GL+ MDIHG +DPFCKLN++P  +  T+ RLRTK
Sbjct: 481 NYGTLEVTLRYDPTTQCLQCKVERARGLQPMDIHGLADPFCKLNILPVDIVATTKRLRTK 540

Query: 173 TCLRTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS 231
           T  +T +PEF+E L FY  +ETD+ + ++LHIL+L DD  G DFLGEA+FPL+ L+PH +
Sbjct: 541 TVHKTRDPEFNETLNFYGTTETDIWNGKALHILILQDDPAGQDFLGEAKFPLHELQPHQT 600

Query: 232 RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN 291
           +   + L  HY V  EE  WG       G+I ++L + T++RAL V + + TNL+PMDSN
Sbjct: 601 KHYNVPLQDHYAVDNEEAAWGVISS-GRGQIQVSLSYCTRRRALTVTIHRATNLLPMDSN 659

Query: 292 GFSDPFIKLYL---------------------------KPDLHKRKYKTGVKWKTLNPIF 324
           GFSDPF+KL L                           K   ++    T +KWKTLNP +
Sbjct: 660 GFSDPFVKLCLIENVTNNHRQRVFDYSIARITAKKLVSKKTTNRNAQSTTIKWKTLNPEW 719

Query: 325 NEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 384
           NEEF   T++T+L K TL +TVWDKD+GKSNDYLG LEL CNSKG RLRHW+D++K+PDH
Sbjct: 720 NEEFTFATRLTDLMKFTLYLTVWDKDFGKSNDYLGGLELSCNSKGARLRHWIDVIKFPDH 779

Query: 385 KHEGIHNL 392
           +H   HNL
Sbjct: 780 RHRAWHNL 787

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712605|ref|XP_003394846.1| PREDICTED: rabphilin-3A-like [Bombus terrestris]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 152/308 (49%), Positives = 203/308 (65%), Gaps = 31/308 (10%)

Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP--LTKTSHRLRTK 172
           N G++E+ + YD TT  L   + RA+GL+ MDIHG +DPFCKLN++P  +  T+ RLRTK
Sbjct: 481 NYGTLEVALRYDPTTQCLQCKVERARGLQPMDIHGLADPFCKLNILPVDIVATTKRLRTK 540

Query: 173 TCLRTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS 231
           T  +T +PEF+E L FY  +ETD+ + ++LHIL+L DD  G DFLGEA+FPL+ L+PH +
Sbjct: 541 TVHKTRDPEFNETLNFYGTTETDIWNGKALHILILQDDPAGQDFLGEAKFPLHELQPHQT 600

Query: 232 RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN 291
           +   + L  HY V  EE  WG       G+I ++L + T++RAL V + + TNL+PMDSN
Sbjct: 601 KHYNVPLQDHYTVDNEEAAWGVISS-GRGQIQVSLSYCTRRRALTVTIHRATNLLPMDSN 659

Query: 292 GFSDPFIKLYL---------------------------KPDLHKRKYKTGVKWKTLNPIF 324
           GFSDPF+KL L                           K   ++    T +KWKTLNP +
Sbjct: 660 GFSDPFVKLCLIENVTNNHRQRVFDYSIARITAKKLVSKKTTNRNAQSTTIKWKTLNPEW 719

Query: 325 NEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 384
           NEEFA  T++T+L K TL +TVWDKD+GKSNDYLG LEL CNSKG RLRHW+D++K+PDH
Sbjct: 720 NEEFAFATRLTDLMKFTLYLTVWDKDFGKSNDYLGGLELSCNSKGARLRHWIDVIKFPDH 779

Query: 385 KHEGIHNL 392
           +H   HNL
Sbjct: 780 RHRAWHNL 787

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021420|gb|EGI61788.1| Double C2-like domain-containing protein beta [Acromyrmex echinatior]

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/310 (48%), Positives = 200/310 (64%), Gaps = 32/310 (10%)

Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK--TSHRLRTK 172
           + G +E+++ YD     L   + RA+ LR MDI G +DPFCKLN++P+ K  TS RLRTK
Sbjct: 496 DYGILEVSLRYDPADQCLQCKVERARRLRPMDIQGLADPFCKLNILPVGKASTSRRLRTK 555

Query: 173 TCLRTINPEFHEKLTFYSVSETDLSL-QSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS 231
           T  +T +PEF+E + FY   ETD+S  ++LHIL++ DD  G DFLGEARFPL+ L P+ +
Sbjct: 556 TVHKTRDPEFNETVNFYGTMETDISTGKALHILIIQDDPSGQDFLGEARFPLHELLPYQT 615

Query: 232 RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN 291
           +    +L  HYPV  EEE WG     + G+I ++L + T++RAL+V + + TNL+PMDSN
Sbjct: 616 KHYKTSLQAHYPVDNEEETWGMCSSGR-GQIQISLSYCTRRRALLVTVHRATNLLPMDSN 674

Query: 292 GFSDPFIKLYLKPDL---HKRK-------------------------YKTGVKWKTLNPI 323
           GFSDPF+KL L  D    H+++                           T +K KTLNP 
Sbjct: 675 GFSDPFVKLALVEDATDNHRQQRFLDYSAARATAKKLTGRKTAGRGSQSTSIKRKTLNPE 734

Query: 324 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD 383
           +NEEF   T++TEL K TL +TVWDKD+GKSNDYLG L L C SKG RLRHW+D +K+PD
Sbjct: 735 WNEEFVFATRLTELMKLTLCLTVWDKDFGKSNDYLGGLMLGCGSKGARLRHWIDAIKFPD 794

Query: 384 HKHEGIHNLS 393
           H+H   HNL+
Sbjct: 795 HRHLAWHNLA 804

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013005|ref|XP_003690562.1| PREDICTED: uncharacterized protein LOC100865891 [Apis florea]

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 145/308 (47%), Positives = 202/308 (65%), Gaps = 31/308 (10%)

Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS--HRLRTK 172
           N G++E+++ YD     L   + RA+GL+ MDI+  +DPFCKLN++P+   +   RLRTK
Sbjct: 478 NYGTLEISLRYDPIIQCLQCKIERARGLQPMDIYDLADPFCKLNILPVNSIAITKRLRTK 537

Query: 173 TCLRTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS 231
           T  +T +PEF+E L FY  +ETD+ + ++LHIL+L DD  G DFLGEARFPL+ L+PH  
Sbjct: 538 TIHKTRDPEFNETLNFYGTTETDIWNGKALHILILQDDPAGQDFLGEARFPLHELQPHQI 597

Query: 232 RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN 291
           +   + L  HYPV  EE  WG     + G+I ++L + T++RALIV + +  NL+PMDSN
Sbjct: 598 KHYNVPLQDHYPVDNEEAAWGVFSSGR-GQIQVSLSYCTRRRALIVTIHRAINLLPMDSN 656

Query: 292 GFSDPFIKLYLKPDL---HKRK------------------------YKTGVKWKTLNPIF 324
           GFSDPF+KL L  ++   H+++                          T +KWKTLNP +
Sbjct: 657 GFSDPFVKLCLIENVTNNHRQRIFDYSIARITGKKLIPKKITSRNVQNTTIKWKTLNPEW 716

Query: 325 NEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 384
           NEEF    ++T+L K TL +TVWDKD+GK+NDYLG LEL  NSKG RLRHW+D++K+PDH
Sbjct: 717 NEEFTFTARLTDLMKLTLYLTVWDKDFGKNNDYLGGLELSRNSKGARLRHWIDVIKFPDH 776

Query: 385 KHEGIHNL 392
           +H+  HNL
Sbjct: 777 RHQAWHNL 784

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849326|ref|XP_003700296.1| PREDICTED: uncharacterized protein LOC100880366 [Megachile rotundata]

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 147/313 (46%), Positives = 201/313 (64%), Gaps = 31/313 (9%)

Query: 111 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLR 170
           + + N G++E+++ YD     L   + RA+GLR MDIHG +DPFCKLN++PL   +   R
Sbjct: 482 EMEQNYGTLEVSLRYDPAVQCLRCKVERARGLRPMDIHGLADPFCKLNILPLATVTTTKR 541

Query: 171 TKTCL--RTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGHDFLGEARFPLNRLR 227
            +T    +T +PEF+E L FY  +ETD+ + ++LHIL+L DD  G DFLGEARFPL+ L 
Sbjct: 542 LRTKTVHQTRDPEFNETLNFYGTTETDIWNGKALHILILQDDPAGQDFLGEARFPLHELH 601

Query: 228 PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIP 287
           P  ++   + L  HYPV  EE  WG       G+I L+L + T++ AL+V + + TNL+P
Sbjct: 602 PRQTKRYNVPLQNHYPVDNEEAAWGVFSS-GRGQIQLSLGYCTRRGALMVTVHRATNLLP 660

Query: 288 MDSNGFSDPFIKLYLKPDL---HKRK------------------------YKTGVKWKTL 320
           MDSNG SDPF+KL L  ++   H+++                          T VKWKTL
Sbjct: 661 MDSNGSSDPFVKLCLIENVTNNHRQRIFDYSFARITIRKLVSKKVANCNAQNTSVKWKTL 720

Query: 321 NPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK 380
           NP +NEEFA   ++T+L K TL +TVWDKD+GKSNDYLG LEL CNSKG RLRHW+D +K
Sbjct: 721 NPEWNEEFAFAARLTDLMKITLCLTVWDKDFGKSNDYLGGLELSCNSKGARLRHWIDAIK 780

Query: 381 YPDHKHEGIHNLS 393
           +PDH+H+  HNL+
Sbjct: 781 FPDHRHQAWHNLT 793

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623787|gb|EHJ74811.1| hypothetical protein KGM_09272 [Danaus plexippus]

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 137/283 (48%), Positives = 193/283 (68%), Gaps = 15/283 (5%)

Query: 113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS-HRLRT 171
           D   G+IE+ ++YD+ T SL VT+ RA+GL  MD+ G SDPFC+L ++P      +RLRT
Sbjct: 286 DAGFGTIEIKLSYDNGTSSLAVTVLRARGLIGMDMTGLSDPFCRLEVLPREGAYFNRLRT 345

Query: 172 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS 231
           KT  +T NPE++E L F+ ++E+DLS++SL ++V DDD+YG D +G A            
Sbjct: 346 KTVHKTKNPEYNETLHFFGITESDLSIKSLELVVFDDDRYGCDEMGSA------------ 393

Query: 232 RDLCLNLCKHYPVPREEEVWGEEECWQHG-KIFLTLCFSTKKRALIVNLIKCTNLIPMDS 290
             + L  C   P      + G   C   G ++ L LC+STKKRAL+V + + T+L P DS
Sbjct: 394 -TVALRECLKTPAQLRLALSGSSGCEPIGPRLLLALCYSTKKRALVVTVCRGTDLPPQDS 452

Query: 291 NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 350
           NG+SDPF+KL+L PD + +K+KT +KW+ LNP++NEEF  ET+ TELS+Q L +TVWDKD
Sbjct: 453 NGYSDPFVKLHLDPDPYHKKHKTSIKWRNLNPVWNEEFYFETRPTELSRQNLTLTVWDKD 512

Query: 351 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
           YGK ND+LG L L  +SKG RL+HW+D +K+PDH+HE  H+L+
Sbjct: 513 YGKPNDFLGSLVLGASSKGRRLKHWMDCIKFPDHRHEQWHSLT 555

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405977354|gb|EKC41811.1| Double C2-like domain-containing protein beta [Crassostrea gigas]

 Score =  280 bits (716), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 136/298 (45%), Positives = 209/298 (70%), Gaps = 7/298 (2%)

Query: 101 TEEKEYFVTSQADTN--LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLN 158
           +E ++   + ++ TN  LGS+E+++ YD+   +LH ++ RA+GL+AMD +G SDP+ KL+
Sbjct: 340 SEHEDNLSSPESPTNGSLGSLEMSLLYDAANNALHCSIVRARGLKAMDSNGLSDPYVKLH 399

Query: 159 LVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGE 218
           L+P    S++LRTKT  +T+NP++++ LT+Y ++E D+  ++L + VLD+D +G DF+GE
Sbjct: 400 LLPGASKSNKLRTKTIHKTLNPDWNKTLTYYGITEDDMYKKTLRLAVLDEDAFGFDFIGE 459

Query: 219 ARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVN 278
            R PL  L+PH ++   + L K  P  +++++   +     GKI L L +ST K+ L+VN
Sbjct: 460 TRVPLKTLQPHQTKHFNVCLEKAIPTDKDDDLLSHDR----GKILLGLKYSTAKQCLVVN 515

Query: 279 LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITEL 337
           +++C  L   DSNG+SDP++KLYLKPD  KR K+KT +K KTLNP +NEEF  + K  EL
Sbjct: 516 VVRCVELAACDSNGYSDPYVKLYLKPDPEKRSKFKTAIKKKTLNPEYNEEFIYDIKHNEL 575

Query: 338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395
           +K+TL ITVWD+D GK+ND++G ++L  NSKG RL+HW D +K PDHK E  H L+ +
Sbjct: 576 AKKTLEITVWDRDIGKANDFIGGVQLGINSKGQRLKHWYDTLKNPDHKFERWHILAAE 633

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
RGD|620519	412	Doc2b "double C2-like domains,	0.691	0.669	0.432	2.9e-66
UNIPROTKB|P70610	412	Doc2b "Double C2-like domain-c	0.691	0.669	0.432	2.9e-66
FB|FBgn0030230	638	Rph "Rabphilin" [Drosophila me	0.907	0.567	0.395	1.2e-65
UNIPROTKB|E1BVF7	704	E1BVF7 "Uncharacterized protei	0.340	0.193	0.518	9.3e-65
MGI|MGI:1100497	412	Doc2b "double C2, beta" [Mus m	0.691	0.669	0.432	7.6e-64
UNIPROTKB|F1N0W4	356	DOC2B "Uncharacterized protein	0.691	0.775	0.436	1.2e-63
UNIPROTKB|J9NZ38	417	DOC2B "Uncharacterized protein	0.704	0.673	0.425	3.3e-63
UNIPROTKB|Q14184	412	DOC2B "Double C2-like domain-c	0.691	0.669	0.421	3.8e-62
UNIPROTKB|A6QR65	704	RPH3A "Rabphilin 3A homolog (M	0.726	0.411	0.413	1.2e-60
UNIPROTKB|Q06846	704	RPH3A "Rabphilin-3A" [Bos taur	0.726	0.411	0.413	1.2e-60

RGD|620519 Doc2b "double C2-like domains, beta" [Rattus norvegicus (taxid:10116)]

 Score = 651 (234.2 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
 Identities = 122/282 (43%), Positives = 193/282 (68%)

Query:   114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 173
             T LG+++ ++ YD    +LH T+ +AKGL+ MD +G +DP+ KL+L+P    +++LRTKT
Sbjct:   125 TALGTLDFSLLYDQENNALHCTISKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKT 184

Query:   174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR 232
                T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++
Sbjct:   185 LRNTLNPSWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTK 244

Query:   233 DLCLNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 292
                + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  MD+NG
Sbjct:   245 TFSICLEKQLPVDKAEDKSLE----ERGRILISLKYSSQKQGLLVGIVRCAHLAAMDANG 300

Query:   293 FSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351
             +SDP++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TVWD D 
Sbjct:   301 YSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDI 360

Query:   352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
             GKSND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct:   361 GKSNDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402

GO:0005215 "transporter activity" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006887 "exocytosis" evidence=IEP

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0008104 "protein localization" evidence=ISO;ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019905 "syntaxin binding" evidence=ISO

GO:0031201 "SNARE complex" evidence=IDA

GO:0031340 "positive regulation of vesicle fusion" evidence=IDA

GO:0032024 "positive regulation of insulin secretion" evidence=ISO;ISS

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=IDA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=ISO;IDA

UNIPROTKB|P70610 Doc2b "Double C2-like domain-containing protein beta" [Rattus norvegicus (taxid:10116)]

 Score = 651 (234.2 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
 Identities = 122/282 (43%), Positives = 193/282 (68%)

Query:   114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 173
             T LG+++ ++ YD    +LH T+ +AKGL+ MD +G +DP+ KL+L+P    +++LRTKT
Sbjct:   125 TALGTLDFSLLYDQENNALHCTISKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKT 184

Query:   174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR 232
                T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++
Sbjct:   185 LRNTLNPSWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTK 244

Query:   233 DLCLNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 292
                + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  MD+NG
Sbjct:   245 TFSICLEKQLPVDKAEDKSLE----ERGRILISLKYSSQKQGLLVGIVRCAHLAAMDANG 300

Query:   293 FSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351
             +SDP++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TVWD D 
Sbjct:   301 YSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDI 360

Query:   352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
             GKSND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct:   361 GKSNDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

FB|FBgn0030230 Rph "Rabphilin" [Drosophila melanogaster (taxid:7227)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 153/387 (39%), Positives = 219/387 (56%)

Query:    17 IRKIASGGSVKLEPQSF------PRPTSPVDSEKFSSSATVRSSPLMSRHTLPLTVNENS 70
             IR    GG  KL    F       RP+   + +  S S   R S  + R ++    +  S
Sbjct:   261 IRSFIDGGERKLSNSFFFNRQQSQRPSECPEYDSVSMSKLRRESSFLRRGSVS---SSWS 317

Query:    71 ISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTC 130
             IS  S      +GN  TQ +           + ++       D  LG +E+ ++Y     
Sbjct:   318 ISDSSGSGSNNSGNSQTQSQYQ---------QHQQQLQQHCRDPLLGWLEIAISYREAFH 368

Query:   131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLV-PL--TKTSHRLRTKTCLRTINPEFHEKLT 187
             SL  T+ RA+ L AMD  G +DP+CKLN++ P   TK +   RTKT  +T NPEF+E L 
Sbjct:   369 SLDCTMVRARDLPAMDAAGLADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQ 428

Query:   188 FYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPRX 247
             F  V   +L    +++ + DDDKYGHDFLG A+  L+ +       + + L       + 
Sbjct:   429 FVGVEPEELGNSLIYVALFDDDKYGHDFLGAAKVCLSTVHSTSQYRISVPLGVE---DQY 485

Query:   248 XXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH 307
                      W +GK+ L+LC++TK+RAL+VN+ +C NL+ MD+NG SDPF+K+ LKPD H
Sbjct:   486 SNAAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAH 545

Query:   308 K-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 366
             K +K+KT VKW+TLNPI+NEEF  E    +L+K+ L++TVWDKD GKSND+LG L+L   
Sbjct:   546 KNKKHKTSVKWRTLNPIYNEEFYFEASPHDLNKEMLILTVWDKDLGKSNDFLGSLQLGAQ 605

Query:   367 SKGDRLRHWVDMMKYPDHKHEGIHNLS 393
             SKG+RL+ W+D ++ PDH HE  H L+
Sbjct:   606 SKGERLQQWLDCIRLPDHFHEKWHCLA 632

GO:0048488 "synaptic vesicle endocytosis" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=IEA;NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1BVF7 E1BVF7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 382 (139.5 bits), Expect = 9.3e-65, Sum P(3) = 9.3e-65
 Identities = 71/137 (51%), Positives = 101/137 (73%)

Query:   258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 316
             + G+I ++L +S++K+ L+V +I+C +L  MD+NG+SDP++K YLKPD  K+ K+KT VK
Sbjct:   558 ERGRILISLKYSSQKQGLLVGIIRCAHLAAMDANGYSDPYVKTYLKPDEDKKSKHKTAVK 617

Query:   317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 376
              KTLNP FNEEF  E K  +L+K+TL +TVWD D GKSND++G + L  N+KG+RL+HW 
Sbjct:   618 KKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDIGKSNDFIGGVVLGINAKGERLKHWF 677

Query:   377 DMMKYPDHKHEGIHNLS 393
             D +K  D K E  H L+
Sbjct:   678 DCLKNKDKKIERWHTLT 694

GO:0005215 "transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=IEA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IEA

MGI|MGI:1100497 Doc2b "double C2, beta" [Mus musculus (taxid:10090)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 122/282 (43%), Positives = 193/282 (68%)

Query:   114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 173
             T LG+++ ++ YD    +LH T+ +AKGL+ MD +G +DP+ KL+L+P    +++LRTKT
Sbjct:   125 TALGTLDFSLLYDQENNALHCTISKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKT 184

Query:   174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR 232
                T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++
Sbjct:   185 LRNTLNPSWNETLTYYGITDEDMVRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTK 244

Query:   233 DLCLNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 292
                + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  MD+NG
Sbjct:   245 TFSICLEKQLPVDKAEDKSLE----ERGRILISLKYSSQKQGLLVGIVRCAHLAAMDANG 300

Query:   293 FSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351
             +SDP++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TVWD D 
Sbjct:   301 YSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDI 360

Query:   352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
             GKSND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct:   361 GKSNDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402

GO:0005215 "transporter activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0008104 "protein localization" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IPI

GO:0031201 "SNARE complex" evidence=ISO

GO:0031340 "positive regulation of vesicle fusion" evidence=ISO

GO:0032024 "positive regulation of insulin secretion" evidence=IMP

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISO

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=ISO;IMP

UNIPROTKB|F1N0W4 DOC2B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 123/282 (43%), Positives = 193/282 (68%)

Query:   114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 173
             T LG+++ ++ YD    +LH T+ +AKGL+ MD +G +DP+ KL+L+P    +++LRTKT
Sbjct:    69 TALGTLDFSLLYDQENNALHCTIAKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKT 128

Query:   174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR 232
                T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++
Sbjct:   129 LRNTLNPTWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTK 188

Query:   233 DLCLNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 292
                + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  MD+NG
Sbjct:   189 TFSICLEKQLPVDKTEDKSLE----ERGRILVSLKYSSQKQGLLVGIVRCAHLAAMDANG 244

Query:   293 FSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351
             +SDP++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL ITVWD D 
Sbjct:   245 YSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEITVWDYDI 304

Query:   352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
             GKSND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct:   305 GKSNDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 346

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|J9NZ38 DOC2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 122/287 (42%), Positives = 195/287 (67%)

Query:   109 TSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHR 168
             T+Q  + LG+++ ++ YD    +LH T+ +AKGL+ MD +G +DP+ KL+L+P    +++
Sbjct:   125 TTQRCSALGTLDFSLLYDQENNALHCTISKAKGLKPMDHNGLADPYVKLHLLPGASKANK 184

Query:   169 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 227
             LRTKT   T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+
Sbjct:   185 LRTKTLRNTLNPTWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLK 244

Query:   228 PHISRDLCLNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIP 287
              + ++   + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  
Sbjct:   245 ANHTKTFSICLEKQLPVDKTEDKSLE----ERGRILISLKYSSQKQGLLVGIVRCAHLAA 300

Query:   288 MDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 346
             MD+NG+SDP++K YLKPD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K+TL +TV
Sbjct:   301 MDANGYSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTV 360

Query:   347 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
             WD D GKSND++G + L  N+KG+RL+HW D +K  D + E  H L+
Sbjct:   361 WDYDIGKSNDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 407

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q14184 DOC2B "Double C2-like domain-containing protein beta" [Homo sapiens (taxid:9606)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 119/282 (42%), Positives = 193/282 (68%)

Query:   114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 173
             T LG+++ ++ YD    +LH T+ +AKGL+ MD +G +DP+ KL+L+P    +++LRTKT
Sbjct:   125 TALGTLDFSLLYDQENNALHCTITKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKT 184

Query:   174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR 232
                T+NP ++E LT+Y +++ D+  ++L I V D+DK+ H +F+GE R PL +L+P+ ++
Sbjct:   185 LRNTLNPTWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTK 244

Query:   233 DLCLNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 292
                + L K  PV +           + G+I ++L +S++K+ L+V +++C +L  MD+NG
Sbjct:   245 TFNICLEKQLPVDKTEDKSLE----ERGRILISLKYSSQKQGLLVGIVRCAHLAAMDANG 300

Query:   293 FSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351
             +SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF  E K  +L+K++L +TVWD D 
Sbjct:   301 YSDPYVKTYLRPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKSLEVTVWDYDI 360

Query:   352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393
             GKSND++G + L  ++KG+RL+HW D +K  D + E  H L+
Sbjct:   361 GKSNDFIGGVVLGIHAKGERLKHWFDCLKNKDKRIERWHTLT 402

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0031340 "positive regulation of vesicle fusion" evidence=ISS

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISS

GO:0008104 "protein localization" evidence=ISS

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISS

GO:0032024 "positive regulation of insulin secretion" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=ISS

GO:0031201 "SNARE complex" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|A6QR65 RPH3A "Rabphilin 3A homolog (Mouse)" [Bos taurus (taxid:9913)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 127/307 (41%), Positives = 198/307 (64%)

Query:   102 EEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP 161
             EE   + + +A T LG++E ++ YD    SLH T+ +AKGL+ MD +G +DP+ KL+L+P
Sbjct:   390 EEANSYDSDEA-TTLGALEFSLLYDQDNSSLHCTIIKAKGLKPMDSNGLADPYVKLHLLP 448

Query:   162 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR 220
                 S++LRTKT   T NP ++E L ++ +++ D+  ++L I V D+DK+GH +F+GE R
Sbjct:   449 GASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETR 508

Query:   221 FPLNRLRPHISRDLCLNLCKHYPVPRXXXXXXXXXCW--------------QHGKIFLTL 266
             F L +L+P+  ++  + L +  P+ R                         + GKI ++L
Sbjct:   509 FSLKKLKPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSL 568

Query:   267 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFN 325
              +ST++  LIV +I+C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FN
Sbjct:   569 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 628

Query:   326 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 385
             EEF  + K ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + +K  D K
Sbjct:   629 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKK 688

Query:   386 HEGIHNL 392
              E  H L
Sbjct:   689 IERWHQL 695

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q06846 RPH3A "Rabphilin-3A" [Bos taurus (taxid:9913)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 127/307 (41%), Positives = 198/307 (64%)

Query:   102 EEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP 161
             EE   + + +A T LG++E ++ YD    SLH T+ +AKGL+ MD +G +DP+ KL+L+P
Sbjct:   390 EEANSYDSDEA-TTLGALEFSLLYDQDNSSLHCTIIKAKGLKPMDSNGLADPYVKLHLLP 448

Query:   162 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR 220
                 S++LRTKT   T NP ++E L ++ +++ D+  ++L I V D+DK+GH +F+GE R
Sbjct:   449 GASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETR 508

Query:   221 FPLNRLRPHISRDLCLNLCKHYPVPRXXXXXXXXXCW--------------QHGKIFLTL 266
             F L +L+P+  ++  + L +  P+ R                         + GKI ++L
Sbjct:   509 FSLKKLKPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSL 568

Query:   267 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFN 325
              +ST++  LIV +I+C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FN
Sbjct:   569 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 628

Query:   326 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 385
             EEF  + K ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + +K  D K
Sbjct:   629 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKK 688

Query:   386 HEGIHNL 392
              E  H L
Sbjct:   689 IERWHQL 695

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P70610	DOC2B_RAT	No assigned EC number	0.4432	0.6917	0.6699	yes	N/A
Q14184	DOC2B_HUMAN	No assigned EC number	0.4326	0.6917	0.6699	yes	N/A
P70169	DOC2B_MOUSE	No assigned EC number	0.4432	0.6917	0.6699	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	399
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	7e-65
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	5e-50
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	4e-27
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	5e-26
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	7e-26
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	1e-24
pfam00168	85	pfam00168, C2, C2 domain	3e-24
cd00030	102	cd00030, C2, C2 domain	4e-24
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-22
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	2e-22
pfam00168	85	pfam00168, C2, C2 domain	3e-21
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	6e-21
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	4e-20
cd00030	102	cd00030, C2, C2 domain	6e-20
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	2e-19
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-19
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	2e-19
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	2e-19
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	3e-19
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	4e-19
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	6e-19
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	3e-18
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	2e-17
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	3e-17
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	5e-17
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	3e-16
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	6e-16
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	1e-15
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-15
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	2e-15
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-15
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-15
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-15
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	4e-15
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	2e-14
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	9e-14
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	3e-13
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	3e-13
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	3e-13
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-12
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	1e-12
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	1e-12
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	2e-12
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	3e-12
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-12
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	6e-12
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-11
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	1e-11
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	2e-11
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	5e-11
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	9e-11
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	2e-10
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-10
cd08408	138	cd08408, C2B_Synaptotagmin-14_16, C2 domain second	5e-10
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	6e-10
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	6e-10
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	1e-09
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	1e-09
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	1e-09
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	2e-09
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	5e-09
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	7e-09
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	6e-08
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	7e-08
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	7e-08
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	8e-08
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	9e-08
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-07
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-07
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	1e-07
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	1e-07
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	2e-07
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	3e-07
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	3e-07
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	4e-07
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	5e-07
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	6e-07
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	8e-07
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-06
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	1e-06
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	1e-06
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	2e-06
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	2e-06
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	2e-06
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-06
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	4e-06
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	4e-06
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	6e-06
cd08680	124	cd08680, C2_Kibra, C2 domain found in Human protei	6e-06
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	9e-06
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	1e-05
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-05
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-05
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	2e-05
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	3e-05
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	3e-05
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	4e-05
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	4e-05
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	6e-05
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	7e-05
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	7e-05
cd08374	133	cd08374, C2F_Ferlin, C2 domain sixth repeat in Fer	7e-05
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	1e-04
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	2e-04
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	3e-04
cd08407	138	cd08407, C2B_Synaptotagmin-13, C2 domain second re	4e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	8e-04
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	0.001
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	0.001
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	0.001
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	0.002
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	0.002
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	0.002
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	0.003
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	0.004
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	0.004

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score =  202 bits (517), Expect = 7e-65
 Identities = 80/133 (60%), Positives = 104/133 (78%), Gaps = 1/133 (0%)

Query: 261 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKT 319
           KI ++L ++T++R LIV +I+C NL  MD+NG+SDPF+KLYLKPD  K+ K+KT VK KT
Sbjct: 1   KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKT 60

Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMM 379
           LNP FNEEF  + K ++L+K+TL ITVWDKD GKSNDY+G L+L  N+KG+RLRHW+D +
Sbjct: 61  LNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCL 120

Query: 380 KYPDHKHEGIHNL 392
           K PD K E  H L
Sbjct: 121 KNPDKKIEAWHTL 133

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score =  164 bits (417), Expect = 5e-50
 Identities = 59/118 (50%), Positives = 88/118 (74%)

Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
           LG++E T+ YD    +LH T+ RAKGL+AMD +G SDP+ KLNL+P    + +LRTKT  
Sbjct: 1   LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH 60

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRD 233
           +T NPEF+E LT+Y ++E D+  ++L +LVLD+D++G+DFLGE R PL +L+P+ ++ 
Sbjct: 61  KTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQ 118

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score =  104 bits (261), Expect = 4e-27
 Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 5/122 (4%)

Query: 266 LCFSTKKR----ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTL 320
           +CFS +       L V +++  NL  MD  G SDP++K++L  +  + +K KT +K +TL
Sbjct: 4   ICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTL 63

Query: 321 NPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK 380
           NP +NE F+ E    ++ K  L++TV D D    ND +G + L CN+ G  LRHW DM+ 
Sbjct: 64  NPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLA 123

Query: 381 YP 382
            P
Sbjct: 124 SP 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score =  101 bits (254), Expect = 5e-26
 Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 7/127 (5%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK----RKYKTGV 315
           G++ L+LC++     + VN+IK  NL  MD NG SDP++K++L   ++K     K KT +
Sbjct: 2   GELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWL---MYKDKRVEKKKTVI 58

Query: 316 KWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 375
           K +TLNP+FNE F     +  L + TL+ITV DKD    ND +G + L   S G  L+HW
Sbjct: 59  KKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHW 118

Query: 376 VDMMKYP 382
            DM+  P
Sbjct: 119 KDMLSKP 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score =  101 bits (253), Expect = 7e-26
 Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 1/124 (0%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G++ L+L +      L V ++K  NL P D  G SDP++K+ L     K +K KT VK  
Sbjct: 1   GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG 60

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
           TLNP+FNE F+ +    +L + +LVITV DKD    N+ +G + L  +S G+ L HW +M
Sbjct: 61  TLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEM 120

Query: 379 MKYP 382
           +  P
Sbjct: 121 LASP 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 97.7 bits (244), Expect = 1e-24
 Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 4/103 (3%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HKRKYKTGVKWK 318
           G+I+L    S K   L V + +  NLIPMD NG SDP++KL L PD  ++ K KT    K
Sbjct: 2   GRIYLK--ISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK 59

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCL 361
           TLNP++NE F  + K  +  ++ L I VWD D    ND++G L
Sbjct: 60  TLNPVWNETFTFDLKPADKDRR-LSIEVWDWDRTTRNDFMGSL 101

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 95.0 bits (237), Expect = 3e-24
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V +I   NL P D NG SDP++K+ L     K   KT V   TLNP++NE F  E  +
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQ-KKDTKKTKVVKNTLNPVWNETFTFE--V 57

Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLE 362
           T      L I V+D D    +D++G + 
Sbjct: 58  TLPELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 95.2 bits (237), Expect = 4e-24
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V +I+  NL   D NG SDP++K+ L     K+K+KT V   TLNP++NE F     +
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGG---KQKFKTKVVKNTLNPVWNETFEFP--V 55

Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLEL 363
            +    TL + VWDKD    +D+LG +E+
Sbjct: 56  LDPESDTLTVEVWDKDRFSKDDFLGEVEI 84

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V +I   NL P D  G SDP++K+ L  D  K K KT V   TLNP++NE F  E  +
Sbjct: 2   LTVKIISARNLPPKDKGGKSDPYVKVSLDGD-PKEKKKTKVVKNTLNPVWNETFEFE--V 58

Query: 335 TELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHW 375
                  L I V+DKD    +D++G   + L     G R    
Sbjct: 59  PPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 91.6 bits (228), Expect = 2e-22
 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
           GK+  +L +  +   L V +I+  +L  MD  G SDP++K+YL PD  K+K++T V  KT
Sbjct: 3   GKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD-KKKKFETKVHRKT 61

Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKD 350
           LNP+FNE F  +   +EL  +TLV +V+D D
Sbjct: 62  LNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 86.9 bits (216), Expect = 3e-21
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L VT+  AK L   D++G SDP+ K++L    +     +TK    T+NP ++E  TF   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGG--QKKDTKKTKVVKNTLNPVWNETFTFEVT 58

Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEAR 220
                 L  L I V D D++G  DF+GE  
Sbjct: 59  LP---ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 87.7 bits (218), Expect = 6e-21
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD---LHKRKYKTGVK 316
           G + +   +   +++L V ++   NL+P+DSNG SDPF+K+ L P          KT VK
Sbjct: 3   GVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVK 62

Query: 317 WKTLNPIFNE--EFAIETKITELSKQTLVITVWDKDYGKSNDYLGC 360
            KTL P+F+E  EF +  +   +    L+ TV D D   SND+ G 
Sbjct: 63  KKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGE 108

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 85.3 bits (211), Expect = 4e-20
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G++  +LC+      L + +IK  NL  MD  GFSDP++K+ L  +  + +K KT VK  
Sbjct: 1   GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN 60

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
           TLNP +NE    +     +   +L+I V D D    N+ +G   +  N+ G    HW +M
Sbjct: 61  TLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEM 120

Query: 379 MKYP 382
           +  P
Sbjct: 121 LANP 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 84.0 bits (208), Expect = 6e-20
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L VT+  A+ L A D++G SDP+ K++L        + +TK    T+NP ++E   F   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEF--- 53

Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR-PHISRDLCLNL 238
              D    +L + V D D++   DFLGE   PL+ L       +L L L
Sbjct: 54  PVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 2/100 (2%)

Query: 119 IELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI 178
           I +++ Y++    L V + R   L AMD +G SDPF KL L P      + +T+   +T+
Sbjct: 2   ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTL 61

Query: 179 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLG 217
           NPEF+E+  FY +  +DL+ ++L I V D D     D++G
Sbjct: 62  NPEFNEEF-FYDIKHSDLAKKTLEITVWDKDIGKSNDYIG 100

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 82.5 bits (204), Expect = 2e-19
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 190
           +L V +  A+ L   D  G SDP+ K++L    K     +TK    T+NP ++E   F  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKK--KTKVVKNTLNPVWNETFEFE- 57

Query: 191 VSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 235
                  L  L I V D D++G  DF+G+   PL+ L      +  
Sbjct: 58  --VPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 83.6 bits (207), Expect = 2e-19
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 4/127 (3%)

Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKT 173
            LG++  ++ Y+S   +L V +   + L AMD   GTSDP+ KL L+P  +  H+++T+ 
Sbjct: 1   KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRV 58

Query: 174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISR 232
             +T NP + E  TFY +    L   SLH  VL  D+Y  D  +GE   PL         
Sbjct: 59  LRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG 118

Query: 233 DLCLNLC 239
           +L ++  
Sbjct: 119 ELLVSRE 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 82.6 bits (205), Expect = 2e-19
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V++I   NL   D NG SDPF+K YL     ++ +KT    KTLNP++NE F +   +
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLN---GEKVFKTKTIKKTLNPVWNESFEVP--V 55

Query: 335 TELSKQTLVITVWDKDYGKSNDYLG 359
               +  L + V+D D G  +D LG
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLG 80

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 82.4 bits (204), Expect = 3e-19
 Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 3/111 (2%)

Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
           NLG I+ +V+YD    +L + + +A  L A D  GTSDPF K+ L+P  K  H+L TK  
Sbjct: 1   NLGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVK 58

Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
            + +NP ++E   F       L  + L++ VLD D++  +D +GE   PLN
Sbjct: 59  RKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLN 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 82.3 bits (204), Expect = 4e-19
 Identities = 38/88 (43%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 318
           G+I LT+ +S++++ LIV + KC NL P DS+   DP+++LYL PD  K  + KT VK  
Sbjct: 3   GRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD 62

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITV 346
            LNP+F+E F     + EL ++TL + V
Sbjct: 63  NLNPVFDETFEFPVSLEELKRRTLDVAV 90

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 81.9 bits (203), Expect = 6e-19
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G +  TL +     AL   +I+   L  MD+NG SDP++KL L P   K  K +T    K
Sbjct: 2   GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK 61

Query: 319 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKD-YGKSNDYLG 359
           T NP FNE          ++ ++TL + V D+D +G  ND+LG
Sbjct: 62  TRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFG--NDFLG 102

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 79.8 bits (197), Expect = 3e-18
 Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 9/118 (7%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKR-KYKTGVKW 317
           G +   L +  K R L V++I+C +L   D     SDP++K YL PD   R K KT VK 
Sbjct: 2   GSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK 61

Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 375
           KTLNP+FNE    + +  EL  + L ++VW +D    N +LG +E+        L  W
Sbjct: 62  KTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEV-------DLGSW 112

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 4/111 (3%)

Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
            LG ++ ++ YD  +  L V + +A  L AMD+ GTSDP+ K+ L+P  K   +  TK  
Sbjct: 1   KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK--KKFETKVH 58

Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
            +T+NP F+E  TF  V  ++L  ++L   V D D++  HD +GE R PL 
Sbjct: 59  RKTLNPVFNETFTF-KVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLL 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 77.1 bits (190), Expect = 3e-17
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR----KYKTGV 315
           G++ L+LC+      L V ++K  +L  MD +G +DP++K+ L    + +    K KT V
Sbjct: 2   GELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNL---YYGKKRISKKKTHV 58

Query: 316 KWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 375
           K  TLNP+FNE F  +    EL   ++   V D D    N+ +G L L   + G    HW
Sbjct: 59  KKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHW 118

Query: 376 VDMMKYPDHKHEGIHNLS 393
            ++   P  +    H L 
Sbjct: 119 KEVCNPPRRQIAEWHMLC 136

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 76.5 bits (189), Expect = 5e-17
 Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 2/106 (1%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKR-KYKTGVKW 317
           G+I  +L ++ K  +L V++ +C NL   D     S+P++K+YL PD  K+ K KT VK 
Sbjct: 1   GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK 60

Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
            T NP+FNE        ++L  +TL ++VW  D    N +LG +E+
Sbjct: 61  NTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEI 106

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G I L ++       L V +  AK L  MD +G SDP+ KL L+P  K   + +TKT  +
Sbjct: 2   GRIYLKISVKDN--KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK 59

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
           T+NP ++E  TF  +   D   + L I V D D+   +DF+G   F ++ L
Sbjct: 60  TLNPVWNETFTFD-LKPADKD-RRLSIEVWDWDRTTRNDFMGSLSFGVSEL 108

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 73.1 bits (180), Expect = 6e-16
 Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 10/98 (10%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V + RA GL A DI G SDPFC L LV     + RL+T T  +T+NPE+++  TF   
Sbjct: 3   LQVKVIRASGLAAADIGGKSDPFCVLELV-----NARLQTHTIYKTLNPEWNKIFTFPIK 57

Query: 192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228
              D+    L + V D+DK    +FLG+   PL  ++ 
Sbjct: 58  DIHDV----LEVTVYDEDKDKKPEFLGKVAIPLLSIKN 91

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
            G +  ++ YD     L+V L +A+ L+  D  GT+DP+CK+ L+P    +   ++K   
Sbjct: 2   RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNT--KQSKIHK 59

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPL 223
           +T+NPEF E   F  V   +L  ++L +L+ D D++   + +G    PL
Sbjct: 60  KTLNPEFDESFVF-EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
           G+I  ++ +  ++  L + ++K   L   D +G SDPF+K+YL PD  K K +T VK K 
Sbjct: 3   GRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 61

Query: 320 LNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
           LNP +NE F  E     +L ++ L + V D D    ND +G + L
Sbjct: 62  LNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
           LG I+LT+ Y S    L VT+H+ + L   D     DP+ +L L+P    S R +T    
Sbjct: 2   LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK 61

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILV 205
             +NP F E   F  VS  +L  ++L + V
Sbjct: 62  DNLNPVFDETFEF-PVSLEELKRRTLDVAV 90

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 8/86 (9%)

Query: 276 IVN--LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETK 333
           +V   L++  NL PMD NG SDP++K  L       KYK+ V  KTLNP + E+F  +  
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG----NEKYKSKVCSKTLNPQWLEQF--DLH 54

Query: 334 ITELSKQTLVITVWDKDYGKSNDYLG 359
           + +   Q L I VWDKD GK ++++G
Sbjct: 55  LFDDQSQILEIEVWDKDTGKKDEFIG 80

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 6/105 (5%)

Query: 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL---HKRKYKTGV 315
            G+I + L +      LIV +++  +L P D     +P++K+YL PD     KR+ KT V
Sbjct: 2   TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKT-V 60

Query: 316 KWKTLNPIFNEEFAI-ETKITELSKQTLVITVWDKDYGKSNDYLG 359
           K KTLNP +N+ F     +   L ++TL +TVWD D    ND+LG
Sbjct: 61  K-KTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLG 104

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 1/103 (0%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G I++ + YD  T  L VT+ +A+ L   D     +P+ K+ L+P      + RTKT  +
Sbjct: 3   GRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK 62

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGE 218
           T+NPE+++   + +V    L  ++L + V D D+ G +DFLGE
Sbjct: 63  TLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGE 105

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
           G IE +++Y+  T SL V +   + L   D     S+P+ K+ L+P      + +T    
Sbjct: 1   GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK 60

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDL 234
            T NP F+E L  Y +S++ L  ++L + V   D++G   FLGE   PL+       +  
Sbjct: 61  NTTNPVFNETLK-YHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSE 119

Query: 235 CLNL 238
              L
Sbjct: 120 WYPL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 15/117 (12%)

Query: 282 CTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIE-TKITELSK 339
             NL  + S G SD F+K YL PD  K+ K KT V  K++NP++N  F  +     +LS+
Sbjct: 36  AKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQ 95

Query: 340 QTLVITVWDKDYGKSNDYLGCLELCC-------------NSKGDRLRHWVDMMKYPD 383
             L +TVWD D   SND+LG + L               +S G+ +  W  M+  P+
Sbjct: 96  ACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPN 152

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 67.3 bits (165), Expect = 9e-14
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 265 TLCFSTKKRA----LIVNLIKCTNLIP-MDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
            L FS +       L V+LIK  NL P        DPF+K+ L PD  +R  ++ VK KT
Sbjct: 2   RLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD-ERRSLQSKVKRKT 60

Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKD 350
            NP F+E F  +    EL ++TL ++V+D D
Sbjct: 61  QNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 127 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKL 186
            +T  LHV +  AK L A+   GTSD F K  L+P      + +T    +++NP ++   
Sbjct: 24  PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTF 83

Query: 187 TFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARF 221
            +  VS  DLS   L + V D DK   +DFLG  R 
Sbjct: 84  VYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRL 119

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 66.4 bits (162), Expect = 3e-13
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G+I L+L +      L V ++K  NL+  +    +DPF+K+YL  D  K  K KT VK  
Sbjct: 2   GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD 61

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
             NPIFNE          L   +L +TV +         +G + +   + G  L HW  M
Sbjct: 62  DTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQM 121

Query: 379 M 379
           +
Sbjct: 122 L 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 10/122 (8%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G++ L++  S K   L V ++   NL  +D +   DP++K YL PD  K  K KT V  K
Sbjct: 2   GQVKLSI--SYKNGTLFVMVMHAKNLPLLDGSD-PDPYVKTYLLPDPQKTTKRKTKVVRK 58

Query: 319 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHW 375
           T NP FNE    +   + +L ++ L ++VW  D    N++LG  C+ L    K D  +  
Sbjct: 59  TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPL---KKLDLSQET 115

Query: 376 VD 377
             
Sbjct: 116 EK 117

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL---RTKT 173
           G + L+++Y  T   L V + +A+ L   D  G SDP+ K++L+   +   +L   +T  
Sbjct: 1   GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLL---QGGKKLKKKKTSV 57

Query: 174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
              T+NP F+E  +F  V    L   SL I V+D D  G ++ +G+     +
Sbjct: 58  KKGTLNPVFNEAFSF-DVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPD 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 8/113 (7%)

Query: 121 LTVT--YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP--LTKTSHRLRTKTCLR 176
           LTV   Y ++  SL V +  A+ L  +D +G+SDPF K+ L+P  L       +T+   +
Sbjct: 5   LTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK 64

Query: 177 TINPEFHEKLTFYSVSETDLSLQS--LHILVLDDDKYG-HDFLGEARFPLNRL 226
           T+ P F E   F +V     S++   L   V D D  G +DF GEA  PLN +
Sbjct: 65  TLFPLFDESFEF-NVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWK 318
           G +F +L ++++K+AL+VN+I+C +L  MD  +G SDP++KL L P+  + K KT V  K
Sbjct: 3   GTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE-KEHKVKTRVLRK 61

Query: 319 TLNPIFNEEFA 329
           T NP+++E F 
Sbjct: 62  TRNPVYDETFT 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYK-TGVKWK 318
           G++ L+L +      L V++I+   L+  D +  SDPF+K+ L   L   K K T     
Sbjct: 1   GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG 60

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVD 377
           T++P +NE F+ +    EL   +LV TV+  +   SND++G + +   S G     HW  
Sbjct: 61  TIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRR 120

Query: 378 MM 379
           M+
Sbjct: 121 ML 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
           G++  +L +      L V LI+  NL P D +G +DP+ K+ L PD    K ++ +  KT
Sbjct: 3   GELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTK-QSKIHKKT 61

Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
           LNP F+E F  E    EL K+TL + ++D D    ++ +G +EL
Sbjct: 62  LNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVEL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 42/93 (45%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 275  LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
            L + L    NL   D NG+SDPF+KL+L     K  YKT V  KTLNP++NEEF IE  +
Sbjct: 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLN---EKSVYKTKVVKKTLNPVWNEEFTIE--V 1096

Query: 335  TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 367
                K  L I V D D G+ ND LG  E+  + 
Sbjct: 1097 LNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129

Length = 1227

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 2/110 (1%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 317
           G+I  +L +  K ++L V++ +C NL   D +   S+P++K YL PD  ++ K KT +K 
Sbjct: 2   GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR 61

Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 367
            T NP++NE        ++L  +TL ++VW  D    N +LG +E+  +S
Sbjct: 62  NTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDS 111

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 2/105 (1%)

Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
            G + L++ Y+ T   + V + +A+ L+AMDI+GTSDP+ K+ L+   K   + +T    
Sbjct: 1   RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK 60

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEA 219
           RT+NP F+E   F ++    L   +L I V+D D+   +D +G+ 
Sbjct: 61  RTLNPVFNESFIF-NIPLERLRETTLIITVMDKDRLSRNDLIGKI 104

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 31/118 (26%)

Query: 271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKL-------------YLKPDLHKRK------- 310
               L V +I+   L+  D NGFSDP+  L               K   H++K       
Sbjct: 26  PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTV 85

Query: 311 -----YKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
                  T VK +TLNP++NE F  E  + ++S   L + +WD D    +D+LGC+ +
Sbjct: 86  PAKSIKVTEVKPQTLNPVWNETFRFE--VEDVSNDQLHLDIWDHD----DDFLGCVNI 137

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 1/98 (1%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G +  ++ Y  T   L +T+ +A+ L+AMDI G SDP+ K++L+   +   + +T     
Sbjct: 1   GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN 60

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD 214
           T+NP ++E L F  V   ++   SL I V+D D+ GH+
Sbjct: 61  TLNPTYNEALVF-DVPPENVDNVSLIIAVVDYDRVGHN 97

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
           LG I  ++ Y  T   L V +  AK L+ MD+ G SDP+ K++L+   K   + +T    
Sbjct: 1   LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 60

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGE 218
           RT+NP ++E  +F  V    +    L + VLD D+ G +D +G+
Sbjct: 61  RTLNPYYNESFSF-EVPFEQIQKVHLIVTVLDYDRIGKNDPIGK 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 58.4 bits (142), Expect = 9e-11
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L ++L +  NL   D  G SDP++K        K  YK+   +K LNP+++E+F +    
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKFKYG---GKTVYKSKTIYKNLNPVWDEKFTL---P 55

Query: 335 TELSKQTLVITVWDKDYGKSNDYLG 359
            E   Q L I V+D D G ++D++G
Sbjct: 56  IEDVTQPLYIKVFDYDRGLTDDFMG 80

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
           G I  +++YD  T SL+V +   + L   D     S+P+ K  L+P      + +T    
Sbjct: 2   GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR 61

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLN 224
            T NP ++E L  YS+S + L  ++L + V   D++G + FLGE   PL+
Sbjct: 62  NTTNPVYNETLK-YSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLD 110

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 13/93 (13%)

Query: 277 VNLIKCTNLIPMDSN------GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI 330
           +++I+  +L+  D        G SDP++ + +      + +K+ V  + LNP +NE +  
Sbjct: 5   IHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA----QTFKSKVIKENLNPKWNEVY-- 58

Query: 331 ETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
           E  + E+  Q L I ++D+D  K  D+LG L +
Sbjct: 59  EAVVDEVPGQELEIELFDEDPDKD-DFLGRLSI 90

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 262 IFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKT 319
           + L L ++     L V +IK +N   +  N   D ++KL L     +   K KT ++   
Sbjct: 4   LLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQ 63

Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDM 378
            +P F E F  +  + +LS+ TL+ +V++K   K  + +G   L  NS G +   HW +M
Sbjct: 64  PDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEM 123

Query: 379 MKYPDH 384
            +    
Sbjct: 124 KESKGQ 129

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 11/125 (8%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGL--RAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
           G +  +V YD     L V+L +A+ L  R  D+    DPF K+ L+P  +    L++K  
Sbjct: 1   GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVA-HCDPFVKVCLLPDER--RSLQSKVK 57

Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP----H 229
            +T NP F E   F  VS  +L  ++L + V D D++  H  +G   FPL  L       
Sbjct: 58  RKTQNPNFDETFVF-QVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGV 116

Query: 230 ISRDL 234
           + RDL
Sbjct: 117 VWRDL 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 12/129 (9%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTS-DPFCKLNLVPLTKTSHRLRTKTCL 175
           G ++L+++Y + T  L V +  AK L  +D  G+  DP+ K  L+P  + + + +TK   
Sbjct: 2   GQVKLSISYKNGT--LFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVR 57

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 234
           +T NP F+E L +  +   DL  + L + V   D    ++FLG    PL +L      DL
Sbjct: 58  KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKL------DL 111

Query: 235 CLNLCKHYP 243
                K YP
Sbjct: 112 SQETEKWYP 120

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V +  A+ L + D +G SDPF K  L          +TKT  +T+NP ++E       
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYL----NGEKVFKTKTIKKTLNPVWNESFEVPVP 56

Query: 192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 238
           S        L + V D D+ G  D LG A   L+ L P  + +L L L
Sbjct: 57  SRVR---AVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 40/125 (32%), Positives = 53/125 (42%), Gaps = 32/125 (25%)

Query: 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL--------TKTSHRLRTKTCLR---- 176
              L VT+  AKGL A D++G SDP+C L +VP         +K     R K  L+    
Sbjct: 27  IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVP 86

Query: 177 ------------TINPEFHEKLTFYSVSETDLSLQSLHILVLD-DDKYGHDFLGEARFPL 223
                       T+NP ++E   F      D+S   LH+ + D DD    DFLG    PL
Sbjct: 87  AKSIKVTEVKPQTLNPVWNETFRFEV---EDVSNDQLHLDIWDHDD----DFLGCVNIPL 139

Query: 224 NRLRP 228
             L  
Sbjct: 140 KDLPS 144

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 280 IKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY---KTGVKWKTLNPIFNEEFAIETKITE 336
           ++  NL P D NG SDP    YLK  L K+K       +   TLNP+F + F +E  +  
Sbjct: 7   VRARNLQPKDPNGKSDP----YLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPG 61

Query: 337 LSKQTLVITVWDKDYGKSNDYLG 359
            S   L I+V D D   S+D +G
Sbjct: 62  NS--ILKISVMDYDLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
           GS++  + YD     LHV + + + L A D     SDP+ K  L+P      + +T    
Sbjct: 2   GSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK 61

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPL 223
           +T+NP F+E L  Y V   +L  + L++ V   D  G + FLGE    L
Sbjct: 62  KTLNPVFNETLR-YKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 53.3 bits (129), Expect = 5e-09
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 280 IKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTG---VKWKTLNPIFNEEFAIETKITE 336
           I C NL+  D    SDPF+ +Y+K     +  + G   V    LNP F   F ++    E
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 337 LSKQTLVITVWDKD----YGKSNDYLGCLE 362
              Q L   V+D D        +D+LG  E
Sbjct: 67  --VQKLRFEVYDVDSKSKDLSDHDFLGEAE 94

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G + L++ Y  TT  L V + +A+ L  MD+ G +DP+ K+NL    K   + +T     
Sbjct: 2   GELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC 61

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 210
           T+NP F+E   F  +   +L   S+  LVLD D+
Sbjct: 62  TLNPVFNESFVF-DIPSEELEDISVEFLVLDSDR 94

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 36/111 (32%), Positives = 45/111 (40%), Gaps = 19/111 (17%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPF--CKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTF- 188
           L V +   + L A+  +GT DPF    LN    T T    RTK   +T NP F E   F 
Sbjct: 1   LSVRVLECRDL-ALKSNGTCDPFARVTLNYSSKTDTK---RTKVKKKTNNPRFDEAFYFE 56

Query: 189 -----------YSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLR 227
                      + V E DL    L + +        D FLGE R PL  L+
Sbjct: 57  LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQ 107

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA----- 329
           L V +++C +L  + SNG  DPF ++ L         +T VK KT NP F+E F      
Sbjct: 1   LSVRVLECRDL-ALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 330 ---IETKIT-----ELSKQTLVITVWDKDYGKSNDYLG 359
               E K       +L K  L + +W       +D+LG
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLG 97

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
           LG I++++TY+ T   L V + RA+GLR +D H  +  + K++L+   K     +T+   
Sbjct: 1   LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVD 59

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVL 206
              +P F+E  +F  V+   L   SL + V+
Sbjct: 60  GAASPSFNESFSF-KVTSRQLDTASLSLSVM 89

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 134 VTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 193
           + L   K L  MD +G SDP+ K  L      + + ++K C +T+NP++ E+   +   +
Sbjct: 4   IVLVEGKNLPPMDDNGLSDPYVKFRL-----GNEKYKSKVCSKTLNPQWLEQFDLHLFDD 58

Query: 194 TDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRL 226
                Q L I V D D    D F+G     L+ L
Sbjct: 59  QS---QILEIEVWDKDTGKKDEFIGRCEIDLSAL 89

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 50.3 bits (120), Expect = 9e-08
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G + L++ Y  +   L+V + RAK L   D+   SDPF K+ LV   K     +T     
Sbjct: 1   GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG 60

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDD-KYGHDFLGE 218
           TI+P ++E  +F  V + +L   SL   V   + K  +DF+G 
Sbjct: 61  TIDPFYNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGR 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETK 333
            L V +I+ + L   D  G SDPF  L    +L   + +T   +KTLNP +N+ F    K
Sbjct: 2   FLQVKVIRASGLAAADIGGKSDPFCVL----ELVNARLQTHTIYKTLNPEWNKIFTFPIK 57

Query: 334 -ITELSKQTLVITVWDKDYGKSNDYLGCL 361
            I       L +TV+D+D  K  ++LG +
Sbjct: 58  DIH----DVLEVTVYDEDKDKKPEFLGKV 82

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 149 GTSDPFCKLNLVPL-TKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDLSLQSLHILVL 206
              DP+ ++ +  L    S + +TK       NP ++E   F  V+  +L+   L  +V 
Sbjct: 23  SIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEF-DVTVPELAF--LRFVVY 79

Query: 207 DDDKYGHDFLGEARFPLNRLRP 228
           D+D    DFLG+A  PL+ LR 
Sbjct: 80  DEDSGDDDFLGQACLPLDSLRQ 101

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 28/85 (32%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L+V +++  +L P +SNG SDP+ ++     +  +++KT V   TLNP +N   +++  +
Sbjct: 17  LMVVIVEGRDLKPCNSNGKSDPYCEV----SMGSQEHKTKVVSDTLNPKWN--SSMQFFV 70

Query: 335 TELSKQTLVITVWDKDYGKSNDYLG 359
            +L +  L ITV+D+D+   +D+LG
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLG 95

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 11/83 (13%)

Query: 284 NLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNE-----EFAIETKITELS 338
           +L+  D +G SDPF ++     L++ + +T V  +TL+P +++     E  +     E++
Sbjct: 12  DLLAADKSGLSDPFARVSF---LNQSQ-ETEVIKETLSPTWDQTLIFDEVELYGSPEEIA 67

Query: 339 KQ--TLVITVWDKDYGKSNDYLG 359
           +    +V+ ++D+D    +++LG
Sbjct: 68  QNPPLVVVELFDQDSVGKDEFLG 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 15/102 (14%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V + RA  +   D+  T D + +L L P T +  + RTKT   +INP ++E  TF   
Sbjct: 2   LTVRVLRATNITKGDLLSTPDCYVELWL-P-TASDEKKRTKTIKNSINPVWNE--TFE-- 55

Query: 192 SETDLSLQS-----LHILVLDDDKYGHDFLGEARFPLNRLRP 228
                 +QS     L + V+D+D    D LG   F +++L+ 
Sbjct: 56  ----FRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKL 93

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLV--PLTKTSHRLRTKTCLRTINPEFHEKLTFY 189
           L V +     L   DI G SDP+ K++L           ++TKT  +T+NP+++E+  F 
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF- 60

Query: 190 SVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRL 226
                +     L   V D+++   D FLG+   PLN L
Sbjct: 61  ---RVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNL 95

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 277 VNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFN-EEFAIETKI 334
           V ++   +L  MD S+  +D F+++          YKT V  K+LNP++N E F  E   
Sbjct: 3   VRVVAARDLPVMDRSSDLTDAFVEVKFG----STTYKTDVVKKSLNPVWNSEWFRFEVDD 58

Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 367
            EL  + L I V D D   +ND +G + +  N 
Sbjct: 59  EELQDEPLQIRVMDHDTYSANDAIGKVYIDLNP 91

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL--RTKTCLRTINPEFHEKLTF 188
            L + L   + L A D  GTSDP+ K       K   +   ++KT  + +NP + EK T 
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPYVKF------KYGGKTVYKSKTIYKNLNPVWDEKFTL 54

Query: 189 YSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 227
                 +   Q L+I V D D+    DF+G A   L+ L 
Sbjct: 55  ----PIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLE 90

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 274 ALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 331
            L V++++  +L   D    G SDP+  L +      +++KT     TLNP +N  +  E
Sbjct: 2   VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG----AQRFKTQTIPNTLNPKWN--YWCE 55

Query: 332 TKITELSKQTLVITVWDKDYGKSNDYLG--CLELC 364
             I     Q L + +WDKD     DYLG   + L 
Sbjct: 56  FPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALE 90

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 284 NLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLV 343
           NL    SNG SDP++ L +  +  +R  KT   + TLNP ++EEF +E    E     + 
Sbjct: 12  NLKADSSNGLSDPYVTL-VDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE--PLWIS 68

Query: 344 ITVWDKDYGKSNDYLG 359
            TVWD+ +   +D  G
Sbjct: 69  ATVWDRSFVGKHDLCG 84

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 47.5 bits (113), Expect = 8e-07
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 2/102 (1%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS-DPFIKLYLKPD-LHKRKYKTGVKW 317
           G+I   L ++ +   L + +  C NL   D       P++K+ L PD  H  K KT VK 
Sbjct: 2   GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK 61

Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG 359
            T+NP+FNE      +   LS + L ++VW     K   +LG
Sbjct: 62  GTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLG 103

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 139 AKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET-DLS 197
           A+ L   D  G+S  + +L+         + RT+T  + +NP ++EKL F +VS+   LS
Sbjct: 9   AQDLMPKDGQGSSSAYVELDF-----DGQKKRTRTKPKDLNPVWNEKLVF-NVSDPSRLS 62

Query: 198 LQSLHILVLDD--DKYGHDFLGEARFPLNRLRPH 229
              L + V +D        FLG  R       P 
Sbjct: 63  NLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPP 96

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 132 LHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 190
           L VT+HRA  L   D   G+SDP+   +     K      T+   + +NP + E      
Sbjct: 3   LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKP--LYSTRIIRKDLNPVWEETWFVLV 60

Query: 191 VSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 229
             +   + + L   + D D++   D LG     L  L   
Sbjct: 61  TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIED 100

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 275 LIVNLIKCTNLIP---MDSNGFS-DPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI 330
           + + +   T+L P   M   GF  DPF+ +       +R ++T  +  TLNP+FNE  A 
Sbjct: 3   VFMEIKSITDLPPLKNMTRTGFDMDPFVII----SFGRRVFRTSWRRHTLNPVFNERLAF 58

Query: 331 ETKITELSKQTLVITVWDKDYGKSNDYLG 359
           E    E +   +   V DKD    NDY+ 
Sbjct: 59  EVYPHEKNFD-IQFKVLDKDKFSFNDYVA 86

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 17/105 (16%)

Query: 128 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL----RTKTCLRTINPEFH 183
               L ++    + L   D+   SDPF  + +   T  S +     RT+     +NP+F 
Sbjct: 1   PKVELSIS---CRNLLDKDVLSKSDPFVVVYVK--TGGSGQWVEIGRTEVIKNNLNPDFV 55

Query: 184 EKLTFYSVSETDLSLQSLHILVLDDDK-----YGHDFLGEARFPL 223
              T     E    +Q L   V D D        HDFLGEA   L
Sbjct: 56  TTFTVDYYFEE---VQKLRFEVYDVDSKSKDLSDHDFLGEAECTL 97

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 272 KRALIVNLIKCTNLIPMDSNGFS--DPFIKLYLK--PDLHKRKYKTG-VKWKTLNPIFNE 326
              L + +I    L     +  S  DP++++ +   P     K+KT  VK    NP++NE
Sbjct: 1   PLTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNE 60

Query: 327 EFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCC 365
            F  +  + EL+   L   V+D+D G  +D+LG  CL L  
Sbjct: 61  TFEFDVTVPELA--FLRFVVYDEDSGD-DDFLGQACLPLDS 98

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)

Query: 131 SLHVTLHRAKGLRAMDIHGTSDPFC--KLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTF 188
           SL++ +   K L A DI G+SDP+C  K++   +      +RT T  +T+NP + E+ T 
Sbjct: 1   SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVI------IRTATVWKTLNPFWGEEYTV 54

Query: 189 YSVSETDLSLQSLHILVLDDDKYGHD 214
           +          ++   VLD+D    D
Sbjct: 55  H----LPPGFHTVSFYVLDEDTLSRD 76

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 284 NLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLV 343
           +L P D NG SDPF++++       +  +T V  K+  P +NE F  E ++ E +   L 
Sbjct: 11  DLAPKDRNGTSDPFVRVFYN----GQTLETSVVKKSCYPRWNEVF--EFELMEGADSPLS 64

Query: 344 ITVWDKDYGKSNDYLG 359
           + VWD D    ND+LG
Sbjct: 65  VEVWDWDLVSKNDFLG 80

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK--PDLHKRKYKTGVKW 317
           G I ++L ++     L V +++   L  +D    +  ++K+ L     + K K KT V  
Sbjct: 2   GDIQISLTYNPTLNRLTVVVLRARGLRQLDHAH-TSVYVKVSLMIHNKVVKTK-KTEVVD 59

Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL--CCNSKGDRLRHW 375
              +P FNE F+ +    +L   +L ++V      + +  LG + L     ++G  L HW
Sbjct: 60  GAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHW 119

Query: 376 VDMMKYP 382
            DM+  P
Sbjct: 120 NDMLSKP 126

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V + R   L   D   +SDP+     V LT  + +++T+   + +NP ++E+LT    
Sbjct: 4   LKVRVVRGTNLAVRDFT-SSDPY-----VVLTLGNQKVKTRVIKKNLNPVWNEELTL--- 54

Query: 192 SETDLSLQSLHILVLDDDKY-GHDFLGEARFPL 223
           S  +     L + V D D +   D +GEA   L
Sbjct: 55  SVPNPMAP-LKLEVFDKDTFSKDDSMGEAEIDL 86

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 132 LHVTLHRAKGLRAMDIH--GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY 189
           L V +  AK L A D    G SDP+       L+  + R +T+T   T+NP+++    F 
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPY-----AILSVGAQRFKTQTIPNTLNPKWNYWCEFP 57

Query: 190 SVSETDLSLQSLHILVLDDDKY-GHDFLGEARFPL 223
             S  +   Q L +++ D D++ G D+LGE    L
Sbjct: 58  IFSAQN---QLLKLILWDKDRFAGKDYLGEFDIAL 89

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176062 cd08680, C2_Kibra, C2 domain found in Human protein Kibra

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 3/97 (3%)

Query: 125 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL-TKTSHRLRTKTCLRTINPEFH 183
           YDS   SL +++ + + L A+ I   S  + ++ L+P  + TS   RTK       P F+
Sbjct: 9   YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFN 68

Query: 184 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEA 219
           E      +S T L  ++L + V         + LG A
Sbjct: 69  EVFRV-PISSTKLYQKTLQVDVCSVGPDQQEECLGGA 104

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that promotes SWH pathway activity. Kibra contains two amino-terminal WW domains, an internal C2-like domain, and a carboxy-terminal glutamic acid-rich stretch. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 124

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 275 LIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETK 333
           L+V + + T+L   D     SDP++         K  Y T +  K LNP++ E + +   
Sbjct: 3   LVVTIHRATDLPKADFGTGSSDPYVTASFAKF-GKPLYSTRIIRKDLNPVWEETWFVLVT 61

Query: 334 ITEL-SKQTLVITVWDKDYGKSNDYLGCLEL 363
             E+ + + L   +WD D   ++D LG +E+
Sbjct: 62  PDEVKAGERLSCRLWDSDRFTADDRLGRVEI 92

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 132 LHVTLHRAKGLRAMDI------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEK 185
           L + +  A+ L A D        G SDP+  + +   T      ++K     +NP+++E 
Sbjct: 3   LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQT-----FKSKVIKENLNPKWNE- 56

Query: 186 LTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPL 223
              Y     ++  Q L I + D+D    DFLG     L
Sbjct: 57  --VYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDL 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNE--EFAIET 332
           L+V ++   +L+P D  G S  +++L    D   +K +T  K K LNP++NE   F + +
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVEL----DFDGQKKRTRTKPKDLNPVWNEKLVFNV-S 56

Query: 333 KITELSKQTLVITVW-DKDYGKSNDYLG 359
             + LS   L + V+ D+  G+   +LG
Sbjct: 57  DPSRLSNLVLEVYVYNDRRSGRRRSFLG 84

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 13/100 (13%)

Query: 132 LHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 190
           L VT+  A+GL+  D I GT DP+   +   ++      RTK    T NP ++E  T Y 
Sbjct: 4   LAVTIKSARGLKGSDIIGGTVDPYVTFS---ISNRRELARTKVKKDTSNPVWNE--TKYI 58

Query: 191 V--SETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLR 227
           +  S T+     L++ V D +    D  +G A F L+ L 
Sbjct: 59  LVNSLTE----PLNLTVYDFNDKRKDKLIGTAEFDLSSLL 94

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 8/85 (9%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V +++ TNL   D    SDP++ L L      +K KT V  K LNP++NEE  +   +
Sbjct: 4   LKVRVVRGTNLAVRDFTS-SDPYVVLTLG----NQKVKTRVIKKNLNPVWNEELTL--SV 56

Query: 335 TELSKQTLVITVWDKDYGKSNDYLG 359
                  L + V+DKD    +D +G
Sbjct: 57  PNPMAP-LKLEVFDKDTFSKDDSMG 80

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V +   + L+  + +G SDP+C++++      S   +TK    T+NP+++  + F+  
Sbjct: 17  LMVVIVEGRDLKPCNSNGKSDPYCEVSM-----GSQEHKTKVVSDTLNPKWNSSMQFFV- 70

Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPL 223
              DL    L I V D D +   DFLG     +
Sbjct: 71  --KDLEQDVLCITVFDRDFFSPDDFLGRTEIRV 101

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 9/104 (8%)

Query: 133 HVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 192
            V +H A+GL   D  G +DP+       +      +R+     T++PEF  +  FY   
Sbjct: 6   QVHVHSAEGLSKQDSGGGADPYVI-----IKCEGESVRSPVQKDTLSPEFDTQAIFYR-K 59

Query: 193 ETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCL 236
           +       + I V + +    +FLG+A    +       R L L
Sbjct: 60  KPR---SPIKIQVWNSNLLCDEFLGQATLSADPNDSQTLRTLPL 100

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 138 RAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS 197
           RA+ L+  D +G SDP+ K+    L K     R      T+NP F +        E  L 
Sbjct: 8   RARNLQPKDPNGKSDPYLKIK---LGKKKINDRDNYIPNTLNPVFGKMFEL----EATLP 60

Query: 198 LQS-LHILVLDDDKYGHD-FLGE 218
             S L I V+D D  G D  +GE
Sbjct: 61  GNSILKISVMDYDLLGSDDLIGE 83

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G +++   YD +   L VT+ RA+ +   D  G S     L L+P  K   R +TK   R
Sbjct: 3   GDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKV-QR 59

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRP 228
             NP F+E  TF  V   +L+  +L   +   ++   +  +GE   PL++L  
Sbjct: 60  GPNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNL 112

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 21/102 (20%)

Query: 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY 189
             + +T+  A+GL A D  GTSDP+     V + KT  + RTKT  + +NP ++EK  F 
Sbjct: 1   AKISITVVCAQGLIAKDKTGTSDPYVT---VQVGKT--KKRTKTIPQNLNPVWNEKFHFE 55

Query: 190 SVSETDLSLQSLHILVLDDD------------KYGHDFLGEA 219
             + +D     + + V D+D            +   DFLG+ 
Sbjct: 56  CHNSSD----RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQT 93

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTS-DPFCKLNLVPLTKTSHRLRTKTCL 175
           G IE  + Y+  T  L +T+   + L   D       P+ K+ L+P    SH  + KT +
Sbjct: 2   GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLP--DKSHNSKRKTAV 59

Query: 176 R--TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPL 223
           +  T+NP F+E L  Y V    LS + L + V          FLGE   PL
Sbjct: 60  KKGTVNPVFNETLK-YVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 169 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-GHDFLGEARFPLNRL 226
            RT     T+NP F+E+L F  V   + +   +   VLD DK+  +D++      +  L
Sbjct: 39  FRTSWRRHTLNPVFNERLAF-EVYPHEKNF-DIQFKVLDKDKFSFNDYVATGSLSVQEL 95

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176020 cd08374, C2F_Ferlin, C2 domain sixth repeat in Ferlin

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 31/118 (26%)

Query: 273 RALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTLN--PIFNE 326
           R ++ N     +++  D+N      SD ++K +L   L + K KT V +++L+    FN 
Sbjct: 3   RVIVWN---TRDVLNDDTNITGEKMSDIYVKGWLDG-LEEDKQKTDVHYRSLDGEGNFNW 58

Query: 327 EF-------AIETKITELSKQT--------------LVITVWDKDYGKSNDYLGCLEL 363
            F         E KI  + K+               L + VWD D    +D+LG LEL
Sbjct: 59  RFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLEL 116

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the sixth C2 repeat, C2E, and has a type-II topology. Length = 133

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L   +  A+ L   D +GTSDPF     V +      L T    ++  P ++E   F   
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPF-----VRVFYNGQTLETSVVKKSCYPRWNEVFEF--- 53

Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR 227
              + +   L + V D D    +DFLG+  F +  L+
Sbjct: 54  ELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQ 90

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 280 IKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK--YKTGVKWKTLNPIFNEEFAIETKITEL 337
                L   D  G SDPF+++  + +       Y+T V   TLNP++         + +L
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FTIPLQKL 63

Query: 338 SK----QTLVITVWDKDYGKSNDYLG 359
                 + + I V+D D    +D +G
Sbjct: 64  CNGDYDRPIKIEVYDYDSSGKHDLIG 89

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYL-KPDLHKR--KYKTGVKWKTLNPIFNEEFAIE 331
           L V ++   +L   D  G SDP++K+ L  PD +      +T    KTLNP +NEEF   
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61

Query: 332 TKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
                  +  L+  V+D++    +D+LG +E+
Sbjct: 62  VNP---REHRLLFEVFDENRLTRDDFLGQVEV 90

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF--SDPFIKLYLKPDLHKRKYKTGVK 316
            G++ L++ +      L+V +IK  NL           D  +K+ LK    K K K   +
Sbjct: 1   TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKR 60

Query: 317 WK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 375
            K  +NP++NE    E     L+  ++ + V ++D    +  LG   L  ++ G   +HW
Sbjct: 61  AKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHW 120

Query: 376 VDMMKYP 382
            +M+  P
Sbjct: 121 EEMLDNP 127

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 6/98 (6%)

Query: 131  SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 190
             L + L   + L + D +G SDPF KL    L + S   +TK   +T+NP ++E+ T   
Sbjct: 1041 YLTIMLRSGENLPSSDENGYSDPFVKLF---LNEKSVY-KTKVVKKTLNPVWNEEFTI-E 1095

Query: 191  VSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRP 228
            V      + ++++   D  +  +D LG A   L++L P
Sbjct: 1096 VLNRVKDVLTINVNDWDSGE-KNDLLGTAEIDLSKLEP 1132

Length = 1227

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G I L+++Y  T   L V + +A+ L   +   T+DPF K+ L+   +   + +T     
Sbjct: 2   GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD 61

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILV 205
             NP F+E + F SV    L   SL + V
Sbjct: 62  DTNPIFNEAMIF-SVPAIVLQDLSLRVTV 89

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 18/96 (18%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           + + ++    LI  D  G SDP    Y+   + K K +T    + LNP++NE+F  E   
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDP----YVTVQVGKTKKRTKTIPQNLNPVWNEKFHFE--- 55

Query: 335 TELSKQTLVITVWDKDYG-----------KSNDYLG 359
              S   + + VWD+D             +S+D+LG
Sbjct: 56  CHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLG 91

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V L  AKGL+  D  G  DP+  +      +T  R          NPE++EK  F +V
Sbjct: 3   LEVLLISAKGLQDTDFLGKIDPYVIIQC----RTQERKSKVAKGDGRNPEWNEKFKF-TV 57

Query: 192 SETDLSLQS-LHILVLDDDKY-GHDFLGEARFPL 223
                   + L + ++D D +   DF+GEA   L
Sbjct: 58  EYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHL 91

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 12/96 (12%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V L  AK L          P+ +L +    KT+ +  +K   RT NP + E  TF  V
Sbjct: 2   LFVYLDSAKNLPLAKSTKEPSPYVELTV---GKTTQK--SKVKERTNNPVWEEGFTFL-V 55

Query: 192 SETDLSLQSLHILVLDDDKYGHDF-LGEARFPLNRL 226
              +   Q L I V DD        LG    PL+ L
Sbjct: 56  R--NPENQELEIEVKDDK---TGKSLGSLTLPLSEL 86

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 9/111 (8%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK 318
           G++ L++      R L +++++   L   +S    + ++K+ L PD   + + KT     
Sbjct: 1   GQLKLSIEGQN--RKLTLHVLEAKGLRSTNSGT-CNSYVKISLSPDKEVRFRQKTSTVPD 57

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG 369
           + NP+F+E F+ +    +  K+ LV TVW+    K +       L C S G
Sbjct: 58  SANPLFHETFSFDVNERDYQKRLLV-TVWN----KLSKSRDSGLLGCMSFG 103

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 12/93 (12%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L+V + +A+GL A     ++DP      V +   +++  TK   RT NPE+++   F   
Sbjct: 2   LYVRVVKARGLPAN----SNDPV-----VEVKLGNYKGSTKAIERTSNPEWNQVFAF--- 49

Query: 192 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLN 224
           S+  L   +L + V D DK   DFLG   F L+
Sbjct: 50  SKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLS 82

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 17/110 (15%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLV-PLTKTSHRLRTKTCLRTINPEFHEKLTF-- 188
           L V +     L     +GT DP+  + L+    K   + RTK   +T NP+F E   F  
Sbjct: 2   LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTK-RTKVKKKTNNPQFDEAFYFDV 58

Query: 189 ----------YSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLR 227
                     + + E D     L + +      G D FLGE R PL  L 
Sbjct: 59  TIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLD 108

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 16/130 (12%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L   +++A+ L A D  G SDPF +++       +    T+    T++P + + L F  V
Sbjct: 3   LRAYIYQARDLLAADKSGLSDPFARVSF-----LNQSQETEVIKETLSPTWDQTLIFDEV 57

Query: 192 S---ETDLSLQ---SLHILVLDDDKYGHD-FLGEARF-PLNRLRPHISRDLCLNLCKHYP 243
                 +   Q    + + + D D  G D FLG +   PL +L         L   + +P
Sbjct: 58  ELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKL---QWFP 114

Query: 244 VPREEEVWGE 253
           + +  +  GE
Sbjct: 115 IYKGGQSAGE 124

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V ++K   L        +DP +++ L       K  T    +T NP +N+ FA     
Sbjct: 2   LYVRVVKARGL----PANSNDPVVEVKLGN----YKGSTKAIERTSNPEWNQVFAFSK-- 51

Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCL 361
             L   TL ++VWDKD  K +D+LG +
Sbjct: 52  DRLQGSTLEVSVWDKDKAK-DDFLGGV 77

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
KOG1028|consensus	421		100.0
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	100.0
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.98
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.97
KOG1013|consensus	362		99.97
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.96
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.96
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.96
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.96
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.95
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.95
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.95
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.95
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.94
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.94
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.94
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.94
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.93
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.93
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.93
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.93
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.93
KOG2059|consensus	800		99.93
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.92
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.92
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.92
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.92
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.92
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.91
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.91
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.91
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.91
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.91
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.91
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.91
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.91
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.9
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.9
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.9
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.9
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.9
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.89
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.89
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.89
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.89
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.88
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.88
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.88
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.88
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.88
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.88
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.87
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.87
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.87
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.87
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.87
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.86
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.86
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.86
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.86
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.86
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.85
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.85
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.85
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.85
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.85
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.85
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.85
KOG0696|consensus	683		99.84
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.84
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.83
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.83
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.83
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.82
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.81
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.81
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.81
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.81
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.81
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.81
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.8
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.8
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.8
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.8
KOG0696|consensus	683		99.8
KOG1028|consensus	421		99.79
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.79
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.79
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.79
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.78
KOG1328|consensus	1103		99.78
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.78
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.78
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.78
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.78
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.78
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.77
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.77
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.77
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.77
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.77
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.76
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.76
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.76
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.76
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.76
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.76
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.76
KOG1030|consensus	168		99.75
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.75
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.75
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.75
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.75
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.75
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.75
KOG1030|consensus	168		99.74
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.74
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.74
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.74
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.74
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.74
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.74
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.73
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.73
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.73
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.73
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.73
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.73
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.72
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.72
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.72
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.72
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.72
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.72
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.72
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.71
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.71
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.71
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.71
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.71
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.71
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.71
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.7
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.7
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.7
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.69
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.69
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.69
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.69
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.69
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.68
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.68
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.68
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.68
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.68
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.68
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.67
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.67
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.67
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.67
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.67
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.67
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.66
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.66
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.66
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.66
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.65
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.65
KOG1011|consensus	1283		99.65
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.65
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.65
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.64
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.64
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.64
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.63
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.62
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.62
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.62
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.62
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.61
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.61
PLN03008	868	Phospholipase D delta	99.61
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.61
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.6
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.6
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.59
KOG2059|consensus	800		99.59
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.58
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.57
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.54
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.53
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.53
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.52
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.47
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.46
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.44
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.44
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.44
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.44
KOG1326|consensus	1105		99.43
KOG1326|consensus	1105		99.43
KOG0905|consensus	1639		99.42
PLN03008	868	Phospholipase D delta	99.4
KOG1013|consensus	362		99.39
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.37
KOG1328|consensus	1103		99.36
KOG1011|consensus	1283		99.35
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.32
KOG0905|consensus	1639		99.31
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.31
KOG1327|consensus	529		99.27
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.27
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.25
PLN02223	537	phosphoinositide phospholipase C	99.22
PLN02223	537	phosphoinositide phospholipase C	99.21
PLN02952	599	phosphoinositide phospholipase C	99.17
PLN02952	599	phosphoinositide phospholipase C	99.12
PLN02230	598	phosphoinositide phospholipase C 4	99.11
PLN02230	598	phosphoinositide phospholipase C 4	99.1
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	99.1
PLN02270	808	phospholipase D alpha	99.09
PLN02222	581	phosphoinositide phospholipase C 2	99.08
KOG1031|consensus	1169		99.07
PLN02222	581	phosphoinositide phospholipase C 2	99.05
PLN02228	567	Phosphoinositide phospholipase C	99.04
KOG0169|consensus	746		99.03
PLN02228	567	Phosphoinositide phospholipase C	98.99
KOG0169|consensus	746		98.97
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.94
KOG1264|consensus	1267		98.9
KOG1031|consensus	1169		98.87
PLN02270	808	phospholipase D alpha	98.84
KOG1264|consensus	1267		98.75
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.74
KOG2060|consensus	405		98.66
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.59
KOG2060|consensus	405		98.52
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.51
PLN02352	758	phospholipase D epsilon	98.34
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.05
PLN02352	758	phospholipase D epsilon	98.01
KOG1327|consensus	529		97.93
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.67
PLN02964	644	phosphatidylserine decarboxylase	97.54
PLN02964	644	phosphatidylserine decarboxylase	97.54
KOG1265|consensus	1189		97.36
KOG3837|consensus	523		97.3
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.28
PF15627	156	CEP76-C2: CEP76 C2 domain	97.25
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.14
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.06
KOG1265|consensus	1189		96.99
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.96
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.9
KOG3837|consensus	523		96.8
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.77
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.73
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.72
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.67
PF15627	156	CEP76-C2: CEP76 C2 domain	96.4
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.35
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.12
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.97
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	95.84
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	95.77
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	95.74
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	95.53
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.11
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	95.11
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	95.01
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	94.84
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	94.59
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	94.08
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	94.05
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	93.66
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	93.56
KOG1452|consensus	442		93.09
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	88.82
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	88.79
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	88.29
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	86.18
KOG1452|consensus	442		86.0
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	84.99
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	84.63
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	83.04
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	82.72
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	81.71

>KOG1028|consensus

Probab=100.00  E-value=1e-48  Score=380.45  Aligned_cols=270  Identities=34%  Similarity=0.553  Sum_probs=248.0

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      .....|+|++++.|+.....|.|+|++|++|++.+..|.+||||+++++|++  ..+.+|++.++++||+|||+|.| .|
T Consensus       149 ~~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk--~~k~kT~v~r~tlnP~fnEtf~f-~v  225 (421)
T KOG1028|consen  149 NVKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK--KGKFKTRVHRKTLNPVFNETFRF-EV  225 (421)
T ss_pred             cceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC--CCcceeeeeecCcCCccccceEe-ec
Confidence            4567899999999999999999999999999999977889999999999987  48999999999999999999999 59


Q ss_pred             CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      +..++....|.|.|||+|++++ ++||++.++|..+.......+|.++.....          ......|+|.++++|.|
T Consensus       226 ~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~----------~~~~~~gel~~sL~Y~p  295 (421)
T KOG1028|consen  226 PYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSST----------DSEELAGELLLSLCYLP  295 (421)
T ss_pred             CHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccC----------CcccccceEEEEEEeec
Confidence            9999999999999999999999 999999999999988877778888864211          11122389999999999


Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeC
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK  349 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  349 (399)
                      ..++|+|.|++|+||..++..+..||||++++..+..+ .++||.+++++.||+|||+|.|.|+.+.+.+..|.|+|||+
T Consensus       296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~  375 (421)
T KOG1028|consen  296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH  375 (421)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence            99999999999999999999999999999999977755 89999999999999999999999999999988999999999


Q ss_pred             CCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        350 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       350 ~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      +.++++++||++.++..+.+.+..||.+|+.+|++++++||.|..
T Consensus       376 d~~~~~~~iG~~~lG~~~~~~~~~hW~~m~~~p~~pv~~wh~l~~  420 (421)
T KOG1028|consen  376 DTLGSNDLIGRCILGSDSTGEEVRHWQEMLNSPRKPVAQWHSLRS  420 (421)
T ss_pred             ccccccceeeEEEecCCCCchHHHHHHHHHhCccCceeeeEeccc
Confidence            999999999999999998888999999999999999999999975

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=100.00  E-value=1.4e-32  Score=227.27  Aligned_cols=135  Identities=24%  Similarity=0.329  Sum_probs=126.4

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCC--CCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccC
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKIT  335 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~--~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~  335 (399)
                      .|+|.++++|.|..++|.|.|++|+||+.++.  .+.+||||+|++.++..+ .++||++++++.||+|||+|.|.++.+
T Consensus         1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~   80 (138)
T cd08407           1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE   80 (138)
T ss_pred             CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence            38999999999999999999999999999873  345899999999987655 789999999999999999999999988


Q ss_pred             cccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136        336 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  393 (399)
Q Consensus       336 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~  393 (399)
                      ++.+..|.|+|||++.++++++||++.|++.+.+.+.+||.+|+.+|++++++||.|.
T Consensus        81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~L~  138 (138)
T cd08407          81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQLH  138 (138)
T ss_pred             HhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEECC
Confidence            8888999999999999999999999999999999999999999999999999999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.98  E-value=1.6e-31  Score=217.70  Aligned_cols=131  Identities=16%  Similarity=0.266  Sum_probs=120.0

Q ss_pred             eEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCC-CceecceEEEEeccCccc
Q psy12136        261 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTL-NPIFNEEFAIETKITELS  338 (399)
Q Consensus       261 ~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~-nP~wne~f~f~v~~~~l~  338 (399)
                      +|.++++|.|..++|+|+|++|+||+++...+.+||||||++.+.+++ .++||++++++. ||+|||+|.|+|+.++ .
T Consensus         2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~-~   80 (135)
T cd08692           2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE-H   80 (135)
T ss_pred             eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh-h
Confidence            799999999999999999999999999877777899999999987766 899999999995 6999999999998754 4


Q ss_pred             ccEEEEEEEeCCCCCCCeeeEEEEEccCC-CCCcchhhhhhhcCCCCceeeEEeC
Q psy12136        339 KQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVDMMKYPDHKHEGIHNL  392 (399)
Q Consensus       339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~-~~~~~~~w~~l~~~p~~~~~~Wh~L  392 (399)
                      +..|.|+|||++..+++++||++.|+.++ .+.+.+||.+|+.+|++++++||.|
T Consensus        81 ~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L  135 (135)
T cd08692          81 GIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL  135 (135)
T ss_pred             eeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence            67899999999999999999999999987 4567999999999999999999987

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.97  E-value=1.5e-31  Score=221.39  Aligned_cols=135  Identities=30%  Similarity=0.408  Sum_probs=127.1

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      .|+|.++++|.+...+|.|+|++|+||+..+..|.+||||++++.+++.+ .++||++++++.||+|||+|.|.++..++
T Consensus         1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l   80 (136)
T cd08406           1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL   80 (136)
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence            38999999999999999999999999999988999999999999876554 68899999999999999999999988888


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  393 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~  393 (399)
                      .+..|.|+|||++.++++++||++.|+..+.+.+.+||++|+.+|++++++||.|.
T Consensus        81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~WH~l~  136 (136)
T cd08406          81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMWHPLR  136 (136)
T ss_pred             CCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEeeecC
Confidence            88999999999999999999999999999999999999999999999999999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>KOG1013|consensus

Probab=99.97  E-value=1.3e-31  Score=240.21  Aligned_cols=281  Identities=37%  Similarity=0.586  Sum_probs=248.5

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      +....|.+.+.+.|+...+.+.+++.+|++|.+++.++..|||+++.++|......+.+|++..+++||.|||+..+..+
T Consensus        75 ~at~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i  154 (362)
T KOG1013|consen   75 PATTLGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGI  154 (362)
T ss_pred             hhhhccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccc
Confidence            44578999999999999999999999999999999999999999999999666667799999999999999998877667


Q ss_pred             CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      ..++...+.+++.|+|.+.+.. +++|+..+++..+...+...+...|+...+  .+.  ........+|++.+++.|..
T Consensus       155 ~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp--~~r--ad~~~~E~rg~i~isl~~~s  230 (362)
T KOG1013|consen  155 TDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLP--SER--ADRDEDEERGAILISLAYSS  230 (362)
T ss_pred             ccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCC--ccc--ccccchhhccceeeeeccCc
Confidence            7777777899999999999988 999999999999988776555555544322  111  12222478999999999999


Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeC
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK  349 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  349 (399)
                      ....+.|++++|..|..+|.+|-+||||+.++.++.++ -++||.+.+++.+|+||+.|.|.+.+.+|....+.|.|||+
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            99999999999999999999999999999999877666 79999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCC
Q psy12136        350 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  396 (399)
Q Consensus       350 ~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~  396 (399)
                      +..+.++++|-+..+....+....||..++..++.....||.|..+.
T Consensus       311 ~~G~s~d~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~~  357 (362)
T KOG1013|consen  311 DIGKSNDSIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLETEG  357 (362)
T ss_pred             CCCcCccCCCcccccccccchhhcCcccccccccccccccccccccc
Confidence            99888999999999999999999999999999999999999998653

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.96  E-value=3.4e-29  Score=208.27  Aligned_cols=134  Identities=27%  Similarity=0.412  Sum_probs=124.3

Q ss_pred             eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      |+|.+++.|.+..++|.|+|++|+||+.++..|.+||||++++.+..++  .++||++++++.||+|||+|.|.++..++
T Consensus         2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l   81 (138)
T cd08408           2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL   81 (138)
T ss_pred             CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence            7899999999999999999999999999998999999999999875433  57899999999999999999999998888


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCCC-CcchhhhhhhcCCCCceeeEEeCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNLS  393 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~-~~~~~w~~l~~~p~~~~~~Wh~L~  393 (399)
                      .+..|.|+|||++.++++++||++.|++...+ .+.+||++|+.+|++++++||.|.
T Consensus        82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l~  138 (138)
T cd08408          82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTLL  138 (138)
T ss_pred             CccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeecC
Confidence            88999999999999999999999999999876 468999999999999999999984

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.96  E-value=4.5e-29  Score=207.76  Aligned_cols=133  Identities=24%  Similarity=0.388  Sum_probs=122.9

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      .|+|++++.|.+..++|.|.|++|+||+..+ .+.+||||+|.+.+.... .+++|++++++.||+|||+|.|.++..++
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l   79 (137)
T cd08409           1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL   79 (137)
T ss_pred             CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence            4899999999999999999999999999888 778999999999876544 68899999999999999999999988888


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccC--CCCCcchhhhhhhcCCCCceeeEEeC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCN--SKGDRLRHWVDMMKYPDHKHEGIHNL  392 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~--~~~~~~~~w~~l~~~p~~~~~~Wh~L  392 (399)
                      .+..|.|+|||++..+++++||++.|+..  +.+.+.+||++|+.+|++++++||.|
T Consensus        80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l  136 (137)
T cd08409          80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHAL  136 (137)
T ss_pred             CccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeC
Confidence            88899999999998889999999999965  56788999999999999999999997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.96  E-value=1.3e-28  Score=205.32  Aligned_cols=135  Identities=36%  Similarity=0.608  Sum_probs=125.0

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      .|+|.+++.|.+..+.|.|.|++|++|+.++..+.+||||+|++.+.+.. .+++|++++++.||+|||+|.|.+...++
T Consensus         1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l   80 (136)
T cd08402           1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI   80 (136)
T ss_pred             CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence            49999999999999999999999999999998999999999999754433 67899999999999999999999986666


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  393 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~  393 (399)
                      ....|.|+|||++.++++++||++.|++.+.+.+..||++|+..|++++++||.|+
T Consensus        81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~~~~~wh~~~  136 (136)
T cd08402          81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWHTLQ  136 (136)
T ss_pred             CCCEEEEEEEeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCCeeeEEEEcC
Confidence            66789999999999999999999999999999999999999999999999999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.96  E-value=4.4e-28  Score=201.50  Aligned_cols=133  Identities=30%  Similarity=0.514  Sum_probs=121.5

Q ss_pred             eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCccc
Q psy12136        260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS  338 (399)
Q Consensus       260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~  338 (399)
                      |+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.++... .+++|++++++.||+|||+|.|.+...++.
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~   80 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE   80 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence            8999999999999999999999999999998899999999998654333 678999999999999999999999877777


Q ss_pred             ccEEEEEEEeCCCCCCCeeeEEEEEccCCCC-CcchhhhhhhcCCCCceeeEEeC
Q psy12136        339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNL  392 (399)
Q Consensus       339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~-~~~~~w~~l~~~p~~~~~~Wh~L  392 (399)
                      +..|.|+|||++..+++++||++.|+..+.+ .+.+||+.|+.+|++++++||.|
T Consensus        81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l  135 (135)
T cd08410          81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL  135 (135)
T ss_pred             CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence            7789999999999899999999999987754 46899999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.95  E-value=5.9e-28  Score=201.30  Aligned_cols=135  Identities=40%  Similarity=0.658  Sum_probs=124.3

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      +|+|.++++|.+..+.|.|+|++|+||+..+..+.+||||+|++.+.+.. .+++|++++++.||+|||+|.|.+...++
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~   80 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL   80 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence            59999999999999999999999999999888899999999999754333 67899999999999999999999876666


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  393 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~  393 (399)
                      .+..|.|+|||++.++++++||++.|++.+.+.+.+||++|+..|++++.+||.|.
T Consensus        81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~~~wh~l~  136 (136)
T cd08405          81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQWHRLK  136 (136)
T ss_pred             CCCEEEEEEEECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCCchhEEEecC
Confidence            66789999999999989999999999999889999999999999999999999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.95  E-value=7.3e-28  Score=200.04  Aligned_cols=132  Identities=61%  Similarity=0.999  Sum_probs=122.3

Q ss_pred             eEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccc
Q psy12136        261 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSK  339 (399)
Q Consensus       261 ~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~  339 (399)
                      +|.+++.|.+..+.|.|+|++|+||+.++..|.+||||+|++.+...+ .+++|++++++.||+|||+|.|.+...++..
T Consensus         1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~   80 (133)
T cd08384           1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK   80 (133)
T ss_pred             CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence            478999999999999999999999999998899999999999875544 6889999999999999999999998766767


Q ss_pred             cEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeC
Q psy12136        340 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL  392 (399)
Q Consensus       340 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L  392 (399)
                      ..|.|+|||++..+++++||++.|++++.+....||++|+.+|++++++||.|
T Consensus        81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~~~~~wh~l  133 (133)
T cd08384          81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAWHTL  133 (133)
T ss_pred             CEEEEEEEeCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCCChheeecC
Confidence            89999999999888899999999999998889999999999999999999987

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.95  E-value=1.6e-27  Score=198.17  Aligned_cols=133  Identities=32%  Similarity=0.569  Sum_probs=123.0

Q ss_pred             eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCccc
Q psy12136        260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS  338 (399)
Q Consensus       260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~  338 (399)
                      |+|.+++.|.+..++|.|+|++|++|+.++..|.+||||+|++.+.+.+ .+++|++++++.||.|||+|.|.+....+.
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~   80 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD   80 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence            7899999999999999999999999999999999999999999764434 688999999999999999999998766666


Q ss_pred             ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeC
Q psy12136        339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL  392 (399)
Q Consensus       339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L  392 (399)
                      ...|.|+|||++..+++++||++.|++.+.+.+.+||++|+.+|++++++||.|
T Consensus        81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~~~~~wh~~  134 (134)
T cd08403          81 NVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRKPIAQWHQL  134 (134)
T ss_pred             CCEEEEEEEECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCCeeeEeecC
Confidence            678999999999999999999999999988889999999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.95  E-value=2.2e-27  Score=197.87  Aligned_cols=135  Identities=32%  Similarity=0.521  Sum_probs=124.4

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      +|+|.++++|.+..+.|.|+|++|+||+..+..|.+||||++++.+.... .+++|++++++.||.|||+|.|.++..++
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~   80 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL   80 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence            59999999999999999999999999999998999999999999765433 57899999999999999999999987666


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  393 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~  393 (399)
                      ....|.|+|||++.++++++||++.|++.+.+.+..||++|...|++++.+||.|.
T Consensus        81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~i~~Wh~l~  136 (136)
T cd08404          81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEWHMLC  136 (136)
T ss_pred             CCCEEEEEEEECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCeeeEEEecC
Confidence            66789999999999999999999999999988899999999999999999999983

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.94  E-value=7.5e-27  Score=185.77  Aligned_cols=116  Identities=22%  Similarity=0.252  Sum_probs=106.0

Q ss_pred             eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccc
Q psy12136        260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK  339 (399)
Q Consensus       260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~  339 (399)
                      |+|+++++|.+..+.|+|+|++|+||+   ..|.+||||++++.++.++.+++|+++++|.||+|||+|.|.|+.+++.+
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~   77 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLD   77 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCC
Confidence            579999999999999999999999998   23569999999998755457889999999999999999999999999999


Q ss_pred             cEEEEEEEeCCCCCCCeeeEEEEEccCC--CCCcchhhhhh
Q psy12136        340 QTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDM  378 (399)
Q Consensus       340 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~--~~~~~~~w~~l  378 (399)
                      ..|.|+|||+|.++++++||++.+++++  .+.+.+||.+|
T Consensus        78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             cEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            9999999999999999999999999996  47889999764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.94  E-value=1.2e-26  Score=184.58  Aligned_cols=116  Identities=16%  Similarity=0.274  Sum_probs=103.2

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136        117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL  196 (399)
Q Consensus       117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l  196 (399)
                      |+|++++.|++..++|.|+|++|+||+   ..|.+||||+|+|+++.+ ..+++|+++++|+||+|||+|.| .|+.+++
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F-~v~~~~l   75 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVF-PLPEEES   75 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEE-eCCHHHh
Confidence            579999999999999999999999999   246699999999987544 46889999999999999999999 6999999


Q ss_pred             CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEe
Q psy12136        197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLN  237 (399)
Q Consensus       197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~  237 (399)
                      ...+|.|+|||+|++++ ++||++.++++++..+.....|..
T Consensus        76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~  117 (118)
T cd08677          76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD  117 (118)
T ss_pred             CCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence            99999999999999999 999999999998866655555544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.94  E-value=4.8e-26  Score=189.40  Aligned_cols=133  Identities=38%  Similarity=0.610  Sum_probs=122.8

Q ss_pred             eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCccc
Q psy12136        260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS  338 (399)
Q Consensus       260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~  338 (399)
                      |+|.++++|.+..++|.|.|++|+||+..+..+.+||||++++.+.... .+++|++++++.||.|||+|.|.+....+.
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~   80 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE   80 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence            8899999999999999999999999999888889999999999875443 578999999999999999999999866665


Q ss_pred             ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeC
Q psy12136        339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL  392 (399)
Q Consensus       339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L  392 (399)
                      ...|.|+|||++..+++++||++.|++++.+.+.+||++|+..|++.+++||+|
T Consensus        81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~wh~~  134 (134)
T cd00276          81 EVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIARWHKL  134 (134)
T ss_pred             CcEEEEEEEecCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCCceEEeeeC
Confidence            688999999999888899999999999998889999999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.94  E-value=5e-26  Score=186.52  Aligned_cols=122  Identities=29%  Similarity=0.459  Sum_probs=111.5

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET  194 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~  194 (399)
                      +|+|++++.|++..++|.|+|++|+||++++.. |.+||||+|+++|+.....++||+++++++||+|||+|.| .++..
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f-~v~~~   79 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRY-KVERE   79 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEE-ECCHH
Confidence            599999999999999999999999999999976 8899999999998765556789999999999999999999 68888


Q ss_pred             cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136        195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL  238 (399)
Q Consensus       195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L  238 (399)
                      ++....|.|+|||++..++ ++||++.|+|.++...+....|++|
T Consensus        80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  124 (125)
T cd08393          80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL  124 (125)
T ss_pred             HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence            8888899999999999888 9999999999999877777778776

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.93  E-value=3.3e-25  Score=181.84  Aligned_cols=122  Identities=28%  Similarity=0.396  Sum_probs=108.6

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET  194 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~  194 (399)
                      .|+|++++.|++..++|.|+|++|+||++++.. |.+||||+|+++|+.....++||+++++++||+|||+|.| .++..
T Consensus         1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f-~v~~~   79 (128)
T cd08392           1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKY-VVEAD   79 (128)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEE-EcCHH
Confidence            499999999999999999999999999999875 8999999999999776567889999999999999999999 58888


Q ss_pred             cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCc---ceeEEEee
Q psy12136        195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI---SRDLCLNL  238 (399)
Q Consensus       195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~---~~~~~~~L  238 (399)
                      ++....|.|.|||++..++ ++||++.|+|+++....   ....|++|
T Consensus        80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            8888999999999999878 99999999999986543   33455554

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.93  E-value=4.4e-25  Score=180.80  Aligned_cols=123  Identities=30%  Similarity=0.511  Sum_probs=111.4

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCC-CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET  194 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~  194 (399)
                      .|+|++++.|++..++|.|+|++|+||++.+. .+.+||||+|++.|+.....++||++++++.||+|||+|.| .++..
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f-~i~~~   79 (125)
T cd04029           1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKY-SISHS   79 (125)
T ss_pred             CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEE-ECCHH
Confidence            49999999999999999999999999998875 47899999999998765557889999999999999999999 58887


Q ss_pred             cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      ++....|.|.|||++..++ ++||++.|+|.++...+....|++|+
T Consensus        80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            7877899999999999888 99999999999999888888888773

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.93  E-value=3.8e-25  Score=180.33  Aligned_cols=119  Identities=29%  Similarity=0.492  Sum_probs=107.2

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136        117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL  196 (399)
Q Consensus       117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l  196 (399)
                      |+|++++.|+  .++|.|+|++|+||++.+ .+.+||||+|++.|+.....++||++++++.||+|||+|.|..++..++
T Consensus         2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l   78 (122)
T cd08381           2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL   78 (122)
T ss_pred             CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence            8999999998  799999999999999999 8899999999999876556789999999999999999999943366777


Q ss_pred             CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136        197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL  238 (399)
Q Consensus       197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L  238 (399)
                      ....|+|+|||++..++ ++||++.++|.++...+....|+.|
T Consensus        79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            78899999999999987 9999999999999877766777766

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.93  E-value=6.9e-25  Score=187.36  Aligned_cols=135  Identities=35%  Similarity=0.552  Sum_probs=120.7

Q ss_pred             ceeEEEEEeeec------------cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceec
Q psy12136        259 HGKIFLTLCFST------------KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFN  325 (399)
Q Consensus       259 ~G~l~l~l~~~~------------~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wn  325 (399)
                      +|+|.+++.|.|            ..+.|.|+|++|+||+..+..+.+||||++++.+...+ .+++|++++++.||.||
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn   80 (162)
T cd04020           1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN   80 (162)
T ss_pred             CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence            599999999999            45899999999999999988899999999999765444 78999999999999999


Q ss_pred             ceEEEEe-ccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCC-------------CCCcchhhhhhhcCCCCceeeEEe
Q psy12136        326 EEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-------------KGDRLRHWVDMMKYPDHKHEGIHN  391 (399)
Q Consensus       326 e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~-------------~~~~~~~w~~l~~~p~~~~~~Wh~  391 (399)
                      |+|.|.+ ...++.+..|.|+|||++.++++++||++.+++.+             .+.+..||++|+.+|+.++.+..+
T Consensus        81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~~~~  160 (162)
T cd04020          81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTLP  160 (162)
T ss_pred             CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEEEEe
Confidence            9999985 34456667899999999999889999999999885             367899999999999999999998


Q ss_pred             CC
Q psy12136        392 LS  393 (399)
Q Consensus       392 L~  393 (399)
                      |+
T Consensus       161 ~~  162 (162)
T cd04020         161 LR  162 (162)
T ss_pred             cC
Confidence            84

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.93  E-value=5.1e-25  Score=179.22  Aligned_cols=119  Identities=24%  Similarity=0.360  Sum_probs=106.5

Q ss_pred             EEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-CceEecccccCCCCCeecceEEeceeCcccC
Q psy12136        118 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT-SHRLRTKTCLRTINPEFHEKLTFYSVSETDL  196 (399)
Q Consensus       118 ~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~-~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l  196 (399)
                      +|++++.|++..++|.|+|++|+||++.+..+.+||||+++|+|+... ..++||++++++.||+|||+|.| .++.+++
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f-~v~~~~L   80 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRV-PISSTKL   80 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEE-ECCHHHh
Confidence            699999999999999999999999999988889999999999997754 36899999999999999999999 5999999


Q ss_pred             CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCc-ceeEEEe
Q psy12136        197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI-SRDLCLN  237 (399)
Q Consensus       197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~-~~~~~~~  237 (399)
                      ....|+|+|||++..++ ++||++.|+|+++.... ....|+.
T Consensus        81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~  123 (124)
T cd08680          81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN  123 (124)
T ss_pred             hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence            99999999999999888 99999999999996553 3344443

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>KOG2059|consensus

Probab=99.93  E-value=3.1e-25  Score=216.11  Aligned_cols=236  Identities=25%  Similarity=0.361  Sum_probs=192.0

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      .+.|.|+|.+|+||++.+..|..||||.|.+.    .....||.++.+++.|.|.|+|.| .++..   -..|.|.|||.
T Consensus         4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD----~E~v~RT~tv~ksL~PF~gEe~~~-~iP~~---F~~l~fYv~D~   75 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD----QEEVCRTATVEKSLCPFFGEEFYF-EIPRT---FRYLSFYVWDR   75 (800)
T ss_pred             ccceeEEEeecccCCCCCCCCCcCcceEEeec----chhhhhhhhhhhhcCCccccceEE-ecCcc---eeeEEEEEecc
Confidence            46799999999999999999999999999996    357899999999999999999999 57654   47899999999


Q ss_pred             CCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeecc--ceeEEEEEEeeecC
Q psy12136        209 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK--KRALIVNLIKCTNL  285 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~--~~~L~v~v~~a~~L  285 (399)
                      | .++ +.||.+.|.=.+|......+.|+.|.+   +++        .....|++++.+.+.+.  ...+...++.++++
T Consensus        76 d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~---VD~--------dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~  143 (800)
T KOG2059|consen   76 D-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQP---VDP--------DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQG  143 (800)
T ss_pred             c-cccccccceeeeeHHHHhhCCCCccceeccc---cCC--------ChhhceeEEEEEEeccccCCCcchhhhhhhccc
Confidence            9 666 999999999989887778888988875   222        24689999999988764  45677888888888


Q ss_pred             CCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccC-------------cccccEEEEEEEe-CCC
Q psy12136        286 IPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-------------ELSKQTLVITVWD-KDY  351 (399)
Q Consensus       286 ~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-------------~l~~~~l~i~V~d-~~~  351 (399)
                      .+...+ .+|||+++.+.+....+..+|+++++|.+|.|+|.|.|.+...             +...-.|.+.+|+ ++.
T Consensus       144 ~P~~~~-~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~  222 (800)
T KOG2059|consen  144 LPIING-QCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNL  222 (800)
T ss_pred             CceeCC-CCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhh
Confidence            776544 4999999998765433668999999999999999999998754             1112468899998 556


Q ss_pred             CCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136        352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  397 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~  397 (399)
                      ...++|+|++.+++..       |.     -....+.|+.|+|++.
T Consensus       223 ~~~~~FlGevrv~v~~-------~~-----~~s~p~~W~~Lqp~~~  256 (800)
T KOG2059|consen  223 VINDVFLGEVRVPVDV-------LR-----QKSSPAAWYYLQPRPN  256 (800)
T ss_pred             hhhhhhceeEEeehhh-------hh-----hccCccceEEEecCCC
Confidence            6669999999999865       21     1224688999988764

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.92  E-value=1.3e-24  Score=177.91  Aligned_cols=122  Identities=28%  Similarity=0.404  Sum_probs=111.9

Q ss_pred             cceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136        115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET  194 (399)
Q Consensus       115 ~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~  194 (399)
                      .+|+|++++.|++..++|.|+|++|+||++.+..+.+||||++.++|.+.  +++||+++++ .||+|||+|.|..++.+
T Consensus         1 ~~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~   77 (124)
T cd08389           1 KCGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPE   77 (124)
T ss_pred             CCEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHH
Confidence            36999999999999999999999999999999888999999999988653  6889999887 99999999999558888


Q ss_pred             cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      ++....|.|.|||++..++ ++||++.|+|+++..+.....|++|+
T Consensus        78 ~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          78 ELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             HhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            8888999999999999887 99999999999999888888898885

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.92  E-value=1.2e-24  Score=178.28  Aligned_cols=123  Identities=35%  Similarity=0.534  Sum_probs=108.4

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCC-CCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE  336 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~  336 (399)
                      +|+|++++.|.+..+.|.|+|++|+||++++.. |.+||||++++.++... .+++|++++++.||+|||+|.|.+...+
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~   80 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE   80 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence            599999999999999999999999999999875 88999999999876544 6789999999999999999999998777


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  393 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~  393 (399)
                      +....|.|+|||++.++++++||++.|+|....            ++.....||+|+
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~------------~~~~~~~W~~L~  125 (125)
T cd08393          81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWD------------WSNTQPTWYPLQ  125 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccc------------cCCCCcceEECc
Confidence            877899999999999999999999999998754            223456777764

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.92  E-value=2.1e-24  Score=176.81  Aligned_cols=123  Identities=33%  Similarity=0.535  Sum_probs=109.2

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCC-CCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE  336 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~-~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~  336 (399)
                      .|+|++++.|.+..+.|.|.|++|+||++.+. .|.+||||++++.++..+ .++||++++++.||+|||+|.|.+...+
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~   80 (125)
T cd04029           1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ   80 (125)
T ss_pred             CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence            49999999999999999999999999998765 578999999999876544 6889999999999999999999998777


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  393 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~  393 (399)
                      +.+..|.|.|||++..+++++||++.|++.+..            ++..+..|++|+
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~------------~~~~~~~w~~l~  125 (125)
T cd04029          81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN------------FDSQHEECLPLH  125 (125)
T ss_pred             hCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc------------ccCCcccEEECc
Confidence            777899999999999999999999999998744            445678888875

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.92  E-value=2.3e-24  Score=176.83  Aligned_cols=125  Identities=27%  Similarity=0.378  Sum_probs=108.5

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCC-CCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE  336 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~  336 (399)
                      .|+|.+++.|.+..+.|.|.|++|+||++++.. |.+||||++++.++.+. .++||++++++.||+|||+|.|.+...+
T Consensus         1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~   80 (128)
T cd08392           1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL   80 (128)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence            489999999999999999999999999998874 89999999999876654 6889999999999999999999998778


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeC
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL  392 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L  392 (399)
                      +.+..|.|.|||++.++++++||++.|+|.+..         +.+....+..||+|
T Consensus        81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~---------~~~~~~~~~~W~~l  127 (128)
T cd08392          81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD---------FEDTDSQRFLWYPL  127 (128)
T ss_pred             hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc---------cCCCCccccceEEC
Confidence            888899999999999889999999999998743         11223345667766

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.92  E-value=6.6e-24  Score=176.78  Aligned_cols=122  Identities=25%  Similarity=0.341  Sum_probs=106.5

Q ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       113 ~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      ...+|+|++++.|  ..++|.|+|++|+||++.+ ..|.+||||+++|+|++....++||+++++++||+|||+|.| .+
T Consensus        14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f-~v   90 (146)
T cd04028          14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVF-DV   90 (146)
T ss_pred             CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEE-EE
Confidence            3468999999999  4789999999999999874 568899999999998776567899999999999999999999 46


Q ss_pred             CcccCCCceEEEEEE-EcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        192 SETDLSLQSLHILVL-DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~-d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      +   +....|.|+|| |++..++ ++||++.|+|+.+..+.....|+.|.+
T Consensus        91 ~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~  138 (146)
T cd04028          91 S---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFP  138 (146)
T ss_pred             c---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence            5   45789999999 5787777 999999999999987777778888864

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.91  E-value=8.7e-24  Score=173.84  Aligned_cols=122  Identities=34%  Similarity=0.536  Sum_probs=107.8

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET  194 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~  194 (399)
                      +|+|++++.|++..++|.|+|++|+||+..+.. +.+||||+|++.+.+  .+++||++++++.||+|||+|.|..++..
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~--~~~~kT~v~~~t~nP~wnE~F~f~~~~~~   79 (128)
T cd08388           2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK--EHKVKTRVLRKTRNPVYDETFTFYGIPYN   79 (128)
T ss_pred             CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc--CceeeccEEcCCCCCceeeEEEEcccCHH
Confidence            699999999999999999999999999998876 889999999998754  35789999999999999999999556777


Q ss_pred             cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCC--cceeEEEeec
Q psy12136        195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH--ISRDLCLNLC  239 (399)
Q Consensus       195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~--~~~~~~~~L~  239 (399)
                      ++....|+|.|||++..++ ++||++.++|+++...  .....|++|+
T Consensus        80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            7777789999999999888 9999999999999765  4566777764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.91  E-value=4.4e-24  Score=173.74  Aligned_cols=117  Identities=18%  Similarity=0.310  Sum_probs=105.1

Q ss_pred             eEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc
Q psy12136        261 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS  338 (399)
Q Consensus       261 ~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~  338 (399)
                      +|.+++.|.+..++|.|+|++|+||++++..+.+||||++++.++.++  .+++|++++++.||+|||+|.|.++.+++.
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~   81 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY   81 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence            689999999999999999999999999988889999999999987753  589999999999999999999999999999


Q ss_pred             ccEEEEEEEeCCCCCCCeeeEEEEEccCCCC---Ccchhhhh
Q psy12136        339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKG---DRLRHWVD  377 (399)
Q Consensus       339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~---~~~~~w~~  377 (399)
                      +..|.|+|||++.++++++||++.|+|+...   ....+||+
T Consensus        82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~  123 (124)
T cd08680          82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN  123 (124)
T ss_pred             cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence            9999999999999999999999999988642   23455553

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.91  E-value=4.8e-24  Score=176.49  Aligned_cols=110  Identities=26%  Similarity=0.320  Sum_probs=101.4

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      .|+|++++.|++..++|.|+|++|+||+..+..+.+||||+|+++|++....++||+++++++||+|||+|.| .++..+
T Consensus         1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F-~v~~~~   79 (136)
T cd08406           1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIF-SVPAIV   79 (136)
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEE-ECCHHH
Confidence            4999999999999999999999999999999889999999999998766556789999999999999999999 699888


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL  226 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l  226 (399)
                      +....|+|+|||++..++ ++||++.|+....
T Consensus        80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~  111 (136)
T cd08406          80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS  111 (136)
T ss_pred             hCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC
Confidence            989999999999999888 9999999987653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.91  E-value=5.2e-24  Score=176.16  Aligned_cols=120  Identities=23%  Similarity=0.303  Sum_probs=104.9

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE  193 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~  193 (399)
                      .|+|+++|.|.+..++|.|.|++|+||++.+.  .+.+||||+|+++++.....++||+++++++||+|||.|.| .++.
T Consensus         1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F-~v~~   79 (138)
T cd08407           1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMF-ELPS   79 (138)
T ss_pred             CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEE-ECCH
Confidence            39999999999999999999999999999983  34589999999998766667899999999999999999999 6999


Q ss_pred             ccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136        194 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL  238 (399)
Q Consensus       194 ~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L  238 (399)
                      +++....|.|+|||++..++ ++||++.+++..  .+.....|..+
T Consensus        80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m  123 (138)
T cd08407          80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM  123 (138)
T ss_pred             HHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence            99989999999999999988 999999999975  33333444444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.91  E-value=1.1e-23  Score=171.67  Aligned_cols=108  Identities=31%  Similarity=0.533  Sum_probs=98.0

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEe-ccCc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE  336 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v-~~~~  336 (399)
                      .|+|.+++.|.  .+.|.|.|++|+||+.++ .+.+||||++++.+...+ .+++|++++++.||+|||+|.|.+ +..+
T Consensus         1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~   77 (122)
T cd08381           1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED   77 (122)
T ss_pred             CCeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence            38999999999  689999999999999999 889999999999876544 789999999999999999999997 5566


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG  369 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~  369 (399)
                      +....|.|+|||++.++++++||++.|++.+..
T Consensus        78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~  110 (122)
T cd08381          78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLD  110 (122)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccc
Confidence            777899999999999989999999999998744

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.91  E-value=2.6e-23  Score=173.20  Aligned_cols=124  Identities=23%  Similarity=0.341  Sum_probs=105.9

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEecc
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  334 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~  334 (399)
                      ...|+|.+++.|.  .+.|.|+|++|+||++.+ ..|.+||||++++.++..+ .++||+++++++||+|||+|.|.+. 
T Consensus        15 ~~~G~l~lsl~y~--~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-   91 (146)
T cd04028          15 PSMGDIQLGLYDK--KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-   91 (146)
T ss_pred             CCcceEEEEEEeC--CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-
Confidence            5689999999994  689999999999998864 5688999999999886655 6999999999999999999999997 


Q ss_pred             CcccccEEEEEEE-eCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136        335 TELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  397 (399)
Q Consensus       335 ~~l~~~~l~i~V~-d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~  397 (399)
                        +.+..|.|+|| |++.++++++||++.|+|+...            .+.....||.|.++..
T Consensus        92 --l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~------------~~~~~~~Wy~L~~~~~  141 (146)
T cd04028          92 --PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLD------------LSNLVIGWYKLFPTSS  141 (146)
T ss_pred             --CCCCEEEEEEEeCCCCCCCCceEEEEEEEccccc------------CCCCceeEEecCCccc
Confidence              56789999999 6788888999999999998753            2334577888887643

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.91  E-value=2.1e-23  Score=171.08  Aligned_cols=122  Identities=34%  Similarity=0.562  Sum_probs=109.8

Q ss_pred             cceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136        115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET  194 (399)
Q Consensus       115 ~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~  194 (399)
                      .+|+|+++++|+...++|.|+|++|+||++.+..+.+||||+|++.+...  .++||++++++.||+|||+|.| .++..
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f-~i~~~   77 (124)
T cd08385           1 KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTF-KVPYS   77 (124)
T ss_pred             CccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEE-eCCHH
Confidence            36999999999999999999999999999999889999999999987543  5789999999999999999999 57766


Q ss_pred             cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      ++....|.|+|||++..++ ++||++.++|.++..+.....|+.|+
T Consensus        78 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          78 ELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             HhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            6767899999999999887 99999999999998877778888774

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.91  E-value=2.2e-23  Score=170.97  Aligned_cols=121  Identities=30%  Similarity=0.574  Sum_probs=110.3

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      +|+|++++.|++..+.|.|+|++|+||++.+..+.+||||+|++.+++.  ..+||++++++.||+|||+|.| .++..+
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f-~v~~~~   78 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVF-EVPPQE   78 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEE-eCCHHH
Confidence            6999999999999999999999999999999889999999999986543  5789999999999999999999 588777


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      +....|.|+|||++..++ ++||++.++|+++..++....|+.|+
T Consensus        79 l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          79 LPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             hCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            777899999999999887 99999999999999887888888874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.90  E-value=5e-23  Score=169.56  Aligned_cols=122  Identities=30%  Similarity=0.475  Sum_probs=110.2

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      .|+|++++.|++..++|.|+|++|+||+..+..+.+||||+|++.+++....++||++++++.||+|||+|.| .++..+
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f-~i~~~~   80 (127)
T cd04030           2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEF-PVSLEE   80 (127)
T ss_pred             CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEE-ecCHHH
Confidence            6999999999999999999999999999999889999999999988665567899999999999999999999 587777


Q ss_pred             CCCceEEEEEEEcCCC--CC-cceeeEEecCcccCCCcceeEEEee
Q psy12136        196 LSLQSLHILVLDDDKY--GH-DFLGEARFPLNRLRPHISRDLCLNL  238 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~--~~-~~lG~~~i~l~~l~~~~~~~~~~~L  238 (399)
                      +....|.|.|||++..  ++ ++||++.++|.++..+.....|+.|
T Consensus        81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            7778999999999875  55 9999999999999877777778776

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.90  E-value=4.9e-23  Score=168.63  Aligned_cols=121  Identities=29%  Similarity=0.525  Sum_probs=108.3

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      |+|++++.|+...+.|.|+|++|+||+..+ ..+.+||||+|++.|+.....+++|++++++.||+|||+|.| .++..+
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f-~i~~~~   79 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY-HISKSQ   79 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEE-eCCHHH
Confidence            899999999999999999999999999988 678899999999987655456889999999999999999999 577777


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL  238 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L  238 (399)
                      +....|.|.|||++..++ ++||++.++|+++..+.....|++|
T Consensus        80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            777899999999998888 9999999999999877666777765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.90  E-value=4.7e-23  Score=167.08  Aligned_cols=117  Identities=26%  Similarity=0.424  Sum_probs=101.6

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136        117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL  196 (399)
Q Consensus       117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l  196 (399)
                      |+|+++++|  ..++|.|+|++|+||++.+ .+.+||||+|+++|+.....++||++++++.||+|||+|.| .++.+++
T Consensus         1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f-~v~~~~~   76 (119)
T cd08685           1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSF-DVNERDY   76 (119)
T ss_pred             CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEE-EcChHHh
Confidence            789999999  6899999999999999998 78899999999998766567889999999999999999999 5777666


Q ss_pred             CCceEEEEEEEcCCCC-C-cceeeEEecCcccCCCcceeEEEee
Q psy12136        197 SLQSLHILVLDDDKYG-H-DFLGEARFPLNRLRPHISRDLCLNL  238 (399)
Q Consensus       197 ~~~~L~~~V~d~~~~~-~-~~lG~~~i~l~~l~~~~~~~~~~~L  238 (399)
                      . ..|.|+|||++... + ++||++.|+|.++..+.....|+.|
T Consensus        77 ~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          77 Q-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             C-CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            4 46889999999874 4 8999999999999876666666654

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.90  E-value=9.5e-23  Score=167.42  Aligned_cols=123  Identities=30%  Similarity=0.442  Sum_probs=105.7

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      +|+|++++.|++..++|.|+|++|++|+..+..+.+||||+|++.++.....++||++++++.||+|||+|.|..++..+
T Consensus         2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~   81 (125)
T cd04031           2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET   81 (125)
T ss_pred             cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence            69999999999999999999999999999998899999999999875544578899999999999999999995345566


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      +....|.|+|||++..++ ++||++.++|.+... .....|++|+
T Consensus        82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~  125 (125)
T cd04031          82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPLQ  125 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEECc
Confidence            667899999999999887 999999999998332 3345677663

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.90  E-value=1.1e-22  Score=167.13  Aligned_cols=122  Identities=34%  Similarity=0.563  Sum_probs=109.0

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      +|+|++++.|.+...+|.|+|++|+||+..+..+.+||||+|++.++.  ..+.+|++++++.||+|||+|.|..++.+.
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~--~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~   79 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK--KHKLETKVKRKNLNPHWNETFLFEGFPYEK   79 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC--CcceeeeeecCCCCCccceeEEEcccCHHH
Confidence            599999999999999999999999999999988999999999997654  357899999999999999999995345555


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      +....|.|+|||++..++ ++||++.+++.++..+.....|+.|.
T Consensus        80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            666789999999999887 99999999999999888888888875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.89  E-value=2.9e-22  Score=164.82  Aligned_cols=125  Identities=30%  Similarity=0.466  Sum_probs=107.2

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCC-CCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEE-EeccCc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI-ETKITE  336 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f-~v~~~~  336 (399)
                      +|+|.+++.|.+....|.|+|++|+||+..+.. +.+||||++++.+.. +.++||++++++.||+|||+|.| .+...+
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~-~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~   80 (128)
T cd08388           2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK-EHKVKTRVLRKTRNPVYDETFTFYGIPYNQ   80 (128)
T ss_pred             CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc-CceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence            699999999999999999999999999998875 889999999997643 36789999999999999999999 566566


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      +.+..|.|+|||++.++++++||++.|+|.+..-          ..+.+.+.|.+|+|
T Consensus        81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~----------~~~~~~~~~~~~~~  128 (128)
T cd08388          81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL----------LNEGELLVSREIQP  128 (128)
T ss_pred             hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCC----------CCCceEEEEEeccC
Confidence            6667899999999999999999999999987541          11345778888875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.89  E-value=1.8e-22  Score=165.18  Aligned_cols=122  Identities=21%  Similarity=0.296  Sum_probs=109.4

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEE-eccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-TKITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l  337 (399)
                      .|+|.+++.|.+...+|.|+|++|+||++.+..|.+||||++.+.+.. +.+++|+++++ .||+|||+|.|. +...++
T Consensus         2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~-~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l   79 (124)
T cd08389           2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK-KQRAKTKVQRG-PNPVFNETFTFSRVEPEEL   79 (124)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC-cceeecccccC-CCCcccCEEEECCCCHHHh
Confidence            699999999999999999999999999999988999999999987753 37889999888 999999999998 877788


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      .+..|.|+|||++.++++++||++.|+|+...            +......|++|+|
T Consensus        80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~------------~~~~~~~w~~L~p  124 (124)
T cd08389          80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLN------------LEGETTVWLTLEP  124 (124)
T ss_pred             ccCEEEEEEEECCCcccCceEEEEEEeccccC------------CCCCceEEEeCCC
Confidence            88999999999999999999999999998754            3446789999986

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.89  E-value=2.6e-22  Score=164.53  Aligned_cols=122  Identities=30%  Similarity=0.459  Sum_probs=107.1

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCccc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS  338 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~  338 (399)
                      +|+|++++.|.+..+.|.|+|++|+||+..+..|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+...++.
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~   80 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR-SNTKQSKIHKKTLNPEFDESFVFEVPPQELP   80 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC-CCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence            699999999999999999999999999999988999999999997542 3678999999999999999999999877777


Q ss_pred             ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136        339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  393 (399)
Q Consensus       339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~  393 (399)
                      +..|.|+|||++.++++++||++.|++++..            .+.....|++|+
T Consensus        81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~------------~~~~~~~W~~l~  123 (124)
T cd08387          81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVD------------LSEKLDLWRKIQ  123 (124)
T ss_pred             CCEEEEEEEECCCCCCCceeEEEEEeccccc------------CCCCcceEEECc
Confidence            7899999999999889999999999998754            122456777775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.89  E-value=2.6e-22  Score=164.33  Aligned_cols=120  Identities=30%  Similarity=0.456  Sum_probs=108.6

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      |+|++++.|++..++|.|+|++|+||+..+ ..+.+||||+|++.++..  ..++|++++++.||+|||.|.| .++...
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~--~~~~T~v~~~~~~P~wne~f~f-~i~~~~   77 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER--RSLQSKVKRKTQNPNFDETFVF-QVSFKE   77 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC--CceEeeeEcCCCCCccceEEEE-EcCHHH
Confidence            899999999999999999999999999998 678899999999987543  5678999999999999999999 577776


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      +....|.|.|||++..++ ++||++.++|.++.....+..|++|+
T Consensus        78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            666789999999999877 99999999999999888888998885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.88  E-value=8.7e-23  Score=169.93  Aligned_cols=122  Identities=25%  Similarity=0.398  Sum_probs=106.2

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      +|+|++++.|++..++|.|+|++|+||++.+ .+.+||||+|++.++.....++||++++++.||+|||+|.| .++.++
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f-~i~~~~   78 (137)
T cd08409           1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSF-KVTSRQ   78 (137)
T ss_pred             CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEE-ECCHHH
Confidence            5999999999999999999999999999998 77899999999988654446789999999999999999999 688888


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      +....|.|+|||++..++ ++||++.++......+.....|..+.
T Consensus        79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~  123 (137)
T cd08409          79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML  123 (137)
T ss_pred             hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence            888999999999998877 99999999976665555555555443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.88  E-value=3.3e-22  Score=170.86  Aligned_cols=124  Identities=30%  Similarity=0.435  Sum_probs=109.7

Q ss_pred             ceEEEEEEEEeC------------CCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeec
Q psy12136        116 LGSIELTVTYDS------------TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH  183 (399)
Q Consensus       116 ~G~i~~~l~y~~------------~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wn  183 (399)
                      +|+|.+++.|.+            ..++|.|+|++|+||++.+..+.+||||+|++.++.....++||++++++.||+||
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn   80 (162)
T cd04020           1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN   80 (162)
T ss_pred             CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence            599999999999            44899999999999999998899999999999886666678999999999999999


Q ss_pred             ceEEeceeCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        184 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       184 e~f~f~~v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      |+|.|..++..++....|.|+|||++..++ ++||++.+++.++........|+.+.
T Consensus        81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~  137 (162)
T cd04020          81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST  137 (162)
T ss_pred             CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence            999995455666767789999999999987 99999999999998776677777774

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.88  E-value=2.6e-22  Score=164.60  Aligned_cols=119  Identities=37%  Similarity=0.639  Sum_probs=104.3

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCccc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS  338 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~  338 (399)
                      .|+|.+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.+.. +.+++|++++++.||+|||+|.|.+...++.
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~   80 (124)
T cd08385           2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK-KKKFETKVHRKTLNPVFNETFTFKVPYSELG   80 (124)
T ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC-CCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence            699999999999999999999999999999888999999999997643 3688999999999999999999999866666


Q ss_pred             ccEEEEEEEeCCCCCCCeeeEEEEEccCCC--CCcchhhhhh
Q psy12136        339 KQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVDM  378 (399)
Q Consensus       339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~--~~~~~~w~~l  378 (399)
                      ...|.|+|||++.++++++||++.|++++.  +...++|++|
T Consensus        81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08385          81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL  122 (124)
T ss_pred             CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence            779999999999988999999999999874  3445555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.88  E-value=6.8e-22  Score=162.80  Aligned_cols=110  Identities=36%  Similarity=0.616  Sum_probs=100.4

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      .|+|.+++.|.+..++|.|+|++|+||+..+..+.+||||+|++.+.... .+++|++++++.||+|||+|.|.+...++
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l   81 (127)
T cd04030           2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEEL   81 (127)
T ss_pred             CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHh
Confidence            69999999999999999999999999999998899999999999865443 78999999999999999999999987777


Q ss_pred             cccEEEEEEEeCCCC--CCCeeeEEEEEccCCC
Q psy12136        338 SKQTLVITVWDKDYG--KSNDYLGCLELCCNSK  368 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~--~~d~~lG~~~i~l~~~  368 (399)
                      ....|.|.|||++.+  +++++||++.|++.+.
T Consensus        82 ~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l  114 (127)
T cd04030          82 KRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL  114 (127)
T ss_pred             cCCEEEEEEEECCcccCCCCceEEEEEEecccc
Confidence            778999999999875  6899999999999874

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.88  E-value=7.6e-22  Score=161.58  Aligned_cols=109  Identities=37%  Similarity=0.578  Sum_probs=99.2

Q ss_pred             eeEEEEEeeeccceeEEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      |+|.+++.|.+..+.|.|+|++|+||+..+ ..+.+||||++++.+.... .+++|++++++.||+|||+|.|.+...++
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l   80 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL   80 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence            899999999999999999999999999988 6788999999999765443 67899999999999999999999987677


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~  368 (399)
                      ....|.|+|||++.++++++||++.++++..
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l  111 (123)
T cd08521          81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSW  111 (123)
T ss_pred             CCCEEEEEEEeCCCCcCCceeeEEEEecccc
Confidence            6789999999999888999999999999874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.88  E-value=6.4e-22  Score=160.44  Aligned_cols=105  Identities=25%  Similarity=0.500  Sum_probs=91.9

Q ss_pred             eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCccc
Q psy12136        260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS  338 (399)
Q Consensus       260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~  338 (399)
                      |+|++++.|  ..+.|.|+|++|+||+.++ .|.+||||++++.++..+ .+++|++++++.||+|||+|.|.+...++.
T Consensus         1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~   77 (119)
T cd08685           1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ   77 (119)
T ss_pred             CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence            788988888  5689999999999999988 788999999999986554 688999999999999999999999765553


Q ss_pred             ccEEEEEEEeCCCCC-CCeeeEEEEEccCCC
Q psy12136        339 KQTLVITVWDKDYGK-SNDYLGCLELCCNSK  368 (399)
Q Consensus       339 ~~~l~i~V~d~~~~~-~d~~lG~~~i~l~~~  368 (399)
                       ..|.|+|||++... ++++||++.|++.+.
T Consensus        78 -~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~  107 (119)
T cd08685          78 -KRLLVTVWNKLSKSRDSGLLGCMSFGVKSI  107 (119)
T ss_pred             -CEEEEEEECCCCCcCCCEEEEEEEecHHHh
Confidence             57899999999765 478999999999874

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.87  E-value=8.1e-22  Score=163.96  Aligned_cols=110  Identities=22%  Similarity=0.337  Sum_probs=100.0

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCC-CCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      |+|++++.|++..++|.|+|++|+||++.+..+.+||||+|+++|+. ....++||++++++.||+|||+|.| .++.++
T Consensus         2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f-~i~~~~   80 (138)
T cd08408           2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVF-QVALFQ   80 (138)
T ss_pred             CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEE-ECCHHH
Confidence            78999999999999999999999999999988999999999999843 3335789999999999999999999 599888


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccC
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR  227 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~  227 (399)
                      +....|.|.|||++..++ ++||++.+++....
T Consensus        81 l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~  113 (138)
T cd08408          81 LSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG  113 (138)
T ss_pred             hCccEEEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence            888999999999998888 99999999987654

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.87  E-value=1.1e-21  Score=161.18  Aligned_cols=109  Identities=33%  Similarity=0.590  Sum_probs=98.3

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEe-ccCc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE  336 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v-~~~~  336 (399)
                      .|+|.+++.|.+..++|.|+|++|+||+..+..+.+||||+|++.+.... .+++|++++++.||+|||+|.|.+ ...+
T Consensus         2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~   81 (125)
T cd04031           2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET   81 (125)
T ss_pred             cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence            69999999999999999999999999999988899999999999765433 788999999999999999999985 3345


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNS  367 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~  367 (399)
                      +....|.|+|||++..+++++||++.+++.+
T Consensus        82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~  112 (125)
T cd04031          82 LKERTLEVTVWDYDRDGENDFLGEVVIDLAD  112 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence            6668999999999998889999999999987

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.87  E-value=2.3e-21  Score=158.67  Aligned_cols=123  Identities=49%  Similarity=0.908  Sum_probs=107.4

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      .|+|++++.|++..+.|+|+|++|++|++.+..+.+||||+|++.++.....++||++++++.||+|||.|.|..+...+
T Consensus         1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~   80 (123)
T cd04035           1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED   80 (123)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence            49999999999999999999999999999988889999999999875544578999999999999999999994355555


Q ss_pred             CCCceEEEEEEEcCCCCCcceeeEEecCcccCCCcceeEEEee
Q psy12136        196 LSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL  238 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L  238 (399)
                      +....|.|+|||++..++++||++.++|+++..+..+++++.|
T Consensus        81 ~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~  123 (123)
T cd04035          81 IQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL  123 (123)
T ss_pred             hCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence            6567899999999988349999999999999988777776553

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.87  E-value=6.1e-22  Score=164.97  Aligned_cols=121  Identities=28%  Similarity=0.448  Sum_probs=104.9

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      +|+|.++++|++..++|.|+|++|+||+..+..+.+||||+|++.+++....+.||++++++.||+|||+|.| .++..+
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f-~v~~~~   79 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVF-DIPSEE   79 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEE-ECCHHH
Confidence            5999999999999999999999999999999899999999999987654445789999999999999999999 577777


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      +....|.|+|||++..++ ++||++.+++..  .+.....|..+.
T Consensus        80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~  122 (136)
T cd08404          80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC  122 (136)
T ss_pred             hCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence            767889999999999988 999999999998  233444555553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.87  E-value=3.2e-21  Score=158.35  Aligned_cols=123  Identities=33%  Similarity=0.476  Sum_probs=105.2

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEe-ccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET-KITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v-~~~~l  337 (399)
                      .|+|++++.|.+..+.|.|.|++|+||+..+..+.+||||++.+.+.. ..+++|++++++.||.|||+|.|.+ +...+
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l   80 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK-KHKLETKVKRKNLNPHWNETFLFEGFPYEKL   80 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC-CcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence            699999999999999999999999999999888899999999996532 3678999999999999999999984 33345


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      ....|.|+|||++..+++++||++.|++.+..            .+.....|+.|+|
T Consensus        81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~l~~  125 (125)
T cd08386          81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVD------------LTEEQTFWKDLKP  125 (125)
T ss_pred             CCCEEEEEEEeCCCCcCCcEeeEEEEeccccc------------CCCCcceEEecCC
Confidence            56789999999999889999999999998744            2334677887775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.86  E-value=1e-21  Score=163.66  Aligned_cols=110  Identities=32%  Similarity=0.520  Sum_probs=99.2

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      +|+|+++++|++..++|.|+|++|+||+..+..+.+||||+|++.++.....++||++++++.||+|||+|.| .++.+.
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f-~i~~~~   79 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIF-NIPLER   79 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEE-eCCHHH
Confidence            5999999999999999999999999999998889999999999976544446789999999999999999999 577666


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL  226 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l  226 (399)
                      +....|.|+|||++..++ ++||++.+++.+.
T Consensus        80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             hCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence            666789999999999887 9999999999886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.86  E-value=3.3e-21  Score=157.20  Aligned_cols=107  Identities=13%  Similarity=0.213  Sum_probs=95.7

Q ss_pred             EEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCC-CCeecceEEeceeCcccC
Q psy12136        118 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI-NPEFHEKLTFYSVSETDL  196 (399)
Q Consensus       118 ~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~-nP~wne~f~f~~v~~~~l  196 (399)
                      +|.++|+|.+..++|.|.|++|+||++....+..||||||++.+.++...++||++++++. ||+|||+|.| .|+.++.
T Consensus         2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~F-dv~~~~~   80 (135)
T cd08692           2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIF-PVTQQEH   80 (135)
T ss_pred             eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEE-eCCchhh
Confidence            7899999999999999999999999998666778999999998877767899999999995 6999999999 6887654


Q ss_pred             CCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136        197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRL  226 (399)
Q Consensus       197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l  226 (399)
                       ...|.|+|||++..++ ++||++.++....
T Consensus        81 -~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          81 -GIQFLIKLYSRSSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             -eeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence             5889999999999888 9999999999764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.86  E-value=6.4e-21  Score=156.06  Aligned_cols=122  Identities=29%  Similarity=0.449  Sum_probs=105.6

Q ss_pred             eeEEEEEeeeccceeEEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCccc
Q psy12136        260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS  338 (399)
Q Consensus       260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~  338 (399)
                      |+|.+++.|.+..++|.|.|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+...++.
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~-~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~   79 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE-RRSLQSKVKRKTQNPNFDETFVFQVSFKELQ   79 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC-CCceEeeeEcCCCCCccceEEEEEcCHHHhc
Confidence            899999999999999999999999999988 67889999999997543 3567899999999999999999999766666


Q ss_pred             ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      ...|.|.|||++..+++++||++.|++++..            .......|++|+|
T Consensus        80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~------------~~~~~~~w~~L~~  123 (123)
T cd08390          80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLD------------LVKGGVVWRDLEP  123 (123)
T ss_pred             ccEEEEEEEECCcCCCCcEEEEEEEecccee------------cCCCceEEEeCCC
Confidence            6789999999998888999999999998744            2334567887765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.86  E-value=5.2e-21  Score=154.34  Aligned_cols=109  Identities=23%  Similarity=0.309  Sum_probs=92.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEec--CCCCCceEecccccCCCCCeecceEEeceeCcc-cCCCceEEEEEEE
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP--LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET-DLSLQSLHILVLD  207 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~--~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~-~l~~~~L~~~V~d  207 (399)
                      +|+|+|++|++|+..+ .|.+||||+|++..  .....++++|+++.+++||+|||+|.| .++.+ .+....|+|.|||
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F-~v~~~~~~~~~~L~~~V~D   78 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQF-ILGNEDDPESYELHICVKD   78 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEE-EeeCcCCCceeEEEEEEEE
Confidence            5899999999999987 48999999999853  112235689999999999999999999 56543 5566789999999


Q ss_pred             cCCCCC-cceeeEEecCcccCCCcceeEEEeeccc
Q psy12136        208 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKH  241 (399)
Q Consensus       208 ~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~  241 (399)
                      ++..++ ++||++.++|.++..++....|++|++.
T Consensus        79 ~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          79 YCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             ecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            998877 9999999999999998888899999764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.86  E-value=5e-21  Score=159.50  Aligned_cols=110  Identities=33%  Similarity=0.507  Sum_probs=99.3

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      +|+|.+++.|.+..++|.|+|++|++|+..+..+.+||||+|++.+.+....+++|++++++.||+|||+|.| .++..+
T Consensus         1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~i~~~~   79 (136)
T cd08402           1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSF-EVPFEQ   79 (136)
T ss_pred             CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEE-ECCHHH
Confidence            4999999999999999999999999999999889999999999986554456789999999999999999999 577777


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL  226 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l  226 (399)
                      +....|.|+|||++..++ ++||++.+++...
T Consensus        80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             hCCCEEEEEEEeCCCCCCCceeEEEEECCccC
Confidence            766789999999999888 9999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.85  E-value=4.2e-21  Score=159.36  Aligned_cols=119  Identities=30%  Similarity=0.463  Sum_probs=102.6

Q ss_pred             EEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCC
Q psy12136        118 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS  197 (399)
Q Consensus       118 ~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~  197 (399)
                      +|++++.|++..++|.|+|++|+||++.+..+.+||||+|++.++.....++||++++++.||+|||+|.| .++..++.
T Consensus         1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~~~~~~l~   79 (133)
T cd08384           1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFY-DIKHSDLA   79 (133)
T ss_pred             CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEE-ECCHHHhC
Confidence            48999999999999999999999999999889999999999988655557889999999999999999999 57777776


Q ss_pred             CceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        198 LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       198 ~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      ...|.|+|||++..++ ++||++.+++...  +.....|+.+.
T Consensus        80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l  120 (133)
T cd08384          80 KKTLEITVWDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCL  120 (133)
T ss_pred             CCEEEEEEEeCCCCCCccEEEEEEEecCCC--CchHHHHHHHH
Confidence            7899999999998877 9999999999863  23334454443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.85  E-value=1.1e-20  Score=152.88  Aligned_cols=117  Identities=17%  Similarity=0.283  Sum_probs=97.1

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccC-CCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~-t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      +.|.|+|++|++|+..+ .|.+||||+|.+.     .+++||+++.+ +.||+|||+|.| .+...   ...|.|+|||+
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg-----~~~~kT~v~~~~~~nP~WNe~F~f-~v~~~---~~~l~~~V~d~   71 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVG-----HAVYETPTAYNGAKNPRWNKTIQC-TLPEG---VDSIYIEIFDE   71 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEEC-----CEEEEeEEccCCCCCCccCeEEEE-EecCC---CcEEEEEEEeC
Confidence            68999999999988776 7899999999994     47889999876 799999999999 46543   35799999999


Q ss_pred             CCCCC-cceeeEEecCc-ccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        209 DKYGH-DFLGEARFPLN-RLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      +.+++ ++||++.+++. .+..++....|++|.+..            .....|+|+++++|
T Consensus        72 d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~------------~~~~~g~i~l~l~y  121 (121)
T cd04016          72 RAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQ------------GEDKEGMINLVFSY  121 (121)
T ss_pred             CCCcCCceEEEEEEECchhccCCCCccccEeCcCcc------------CCCCceEEEEEEeC
Confidence            99988 99999999996 577777677888886421            12467999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.85  E-value=8.2e-21  Score=157.75  Aligned_cols=110  Identities=29%  Similarity=0.395  Sum_probs=97.7

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136        117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL  196 (399)
Q Consensus       117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l  196 (399)
                      |+|++++.|.+..+.|.|+|++|+||+..+..+.+||||+|++.++.....+++|++++++.||+|||+|.| .++.+++
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f-~i~~~~l   79 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSF-KVPQEEL   79 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEE-eCCHHHh
Confidence            899999999999999999999999999999889999999999976554456789999999999999999999 5877777


Q ss_pred             CCceEEEEEEEcCCCCC-cceeeEEecCcccC
Q psy12136        197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLR  227 (399)
Q Consensus       197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~  227 (399)
                      ....|.|+|||++..++ ++||++.|......
T Consensus        80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~  111 (135)
T cd08410          80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG  111 (135)
T ss_pred             CCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC
Confidence            77789999999999888 99999987664443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.85  E-value=1e-20  Score=157.26  Aligned_cols=119  Identities=31%  Similarity=0.493  Sum_probs=102.0

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136        117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL  196 (399)
Q Consensus       117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l  196 (399)
                      |+|++++.|.+..++|+|+|++|++|++.+..+.+||||+|++.+.+....+++|++++++.||+|||+|.| .++.+.+
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~i~~~~~   79 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVF-DVPPENV   79 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEE-ECCHHHh
Confidence            899999999999999999999999999999999999999999976554456789999999999999999999 5777767


Q ss_pred             CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136        197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL  238 (399)
Q Consensus       197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L  238 (399)
                      ....|.|+|||++..++ ++||++.+++...  +.....|..+
T Consensus        80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~  120 (134)
T cd08403          80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM  120 (134)
T ss_pred             CCCEEEEEEEECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence            66789999999999987 9999999998743  3333444444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.85  E-value=1.8e-20  Score=151.25  Aligned_cols=109  Identities=20%  Similarity=0.237  Sum_probs=89.2

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEec--CCCC-ceEeecceeCCCCceecceEEEEeccC-cccccEEEEEEEeC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP--DLHK-RKYKTGVKWKTLNPIFNEEFAIETKIT-ELSKQTLVITVWDK  349 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~--~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~l~i~V~d~  349 (399)
                      +|+|+|++|++|+..+ .|.+||||+|++.+  ...+ ++++|+++.++.||+|||+|.|.+... .+....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            5899999999999877 58999999999864  1122 578999999999999999999999754 45557899999999


Q ss_pred             CCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        350 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       350 ~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      +..+++++||++.|++++..            ++.....|++|.+.
T Consensus        80 d~~~~dd~IG~~~l~l~~~~------------~~~~~~~w~~L~~~  113 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIA------------QAGSCACWLPLGRR  113 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCc------------CCCcEEEEEECcCc
Confidence            98888999999999988743            33346778888654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.85  E-value=1.5e-20  Score=157.50  Aligned_cols=132  Identities=27%  Similarity=0.304  Sum_probs=101.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee-------------CcccCC
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV-------------SETDLS  197 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v-------------~~~~l~  197 (399)
                      +|.|+|++|+||++  ..|.+||||+|++.+......++||+++++++||+|||+|.|. +             +.+++.
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~   77 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAE   77 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEE-EecccccccccccCCccccc
Confidence            48999999999998  5688999999999875544578899999999999999999994 5             334555


Q ss_pred             CceEEEEEEEcCCCCC-cceeeEEecCcccCCC-cceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136        198 LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH-ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL  266 (399)
Q Consensus       198 ~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l  266 (399)
                      ...|.|.|||++..++ +|||++.|+|.++..+ .....|++|++......+.. .........|.|++.+
T Consensus        78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~  147 (148)
T cd04010          78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPG-TRSSKDNSLGSLRLKI  147 (148)
T ss_pred             EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCC-CcccccCCcccEEEec
Confidence            5789999999998877 9999999999999876 56677888876433221111 1122345677777654

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.85  E-value=1.7e-20  Score=154.09  Aligned_cols=119  Identities=24%  Similarity=0.378  Sum_probs=98.1

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCc---ccCCCceEEEEEEEc
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE---TDLSLQSLHILVLDD  208 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~---~~l~~~~L~~~V~d~  208 (399)
                      ++|+|++|+||+..+..|.+||||+|.+.     ..++||++++++.||+|||+|.| .++.   ++.....|.|.|||+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-----~~~~kT~v~~~t~nP~Wne~f~F-~v~~~~~~~~~~~~l~~~v~d~   74 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-----KEKYSTSVKEKTTSPVWKEECSF-ELPGLLSGNGNRATLQLTVMHR   74 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC-----CeeeeeeeecCCCCCEeCceEEE-EecCcccCCCcCCEEEEEEEEc
Confidence            57999999999999988999999999995     46889999999999999999999 5655   234567899999999


Q ss_pred             CCCCC-cceeeEEecCcccC--CCcceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136        209 DKYGH-DFLGEARFPLNRLR--PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL  266 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l  266 (399)
                      +..++ ++||++.|+|.++.  .+.....|++|.....          ......|+|++++
T Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~----------~~~~~~Gei~l~~  125 (126)
T cd08682          75 NLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG----------KDDKERGEIEVDI  125 (126)
T ss_pred             cccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC----------CCccccceEEEEe
Confidence            99887 99999999999987  4555677888864211          1135689999876

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>KOG0696|consensus

Probab=99.84  E-value=3.3e-21  Score=178.97  Aligned_cols=131  Identities=34%  Similarity=0.605  Sum_probs=117.0

Q ss_pred             cccccccccccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecc
Q psy12136        248 EEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNE  326 (399)
Q Consensus       248 ~~~~~~~~~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne  326 (399)
                      ++.++.+....+|+|.+.+..  ....|+|+|.+|+||.+||.+|.+||||++.+.++.+. .++||++++.++||+|||
T Consensus       157 PslCG~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNE  234 (683)
T KOG0696|consen  157 PSLCGTDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNE  234 (683)
T ss_pred             CcccCCcchhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccc
Confidence            455667778899999988876  56799999999999999999999999999999987765 899999999999999999


Q ss_pred             eEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCC-CCcchhhhhhhcC
Q psy12136        327 EFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK-GDRLRHWVDMMKY  381 (399)
Q Consensus       327 ~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~-~~~~~~w~~l~~~  381 (399)
                      +|+|.+.+.+- ++.|.|+|||||+.++++++|...+++++. -.....||.+++.
T Consensus       235 tftf~Lkp~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKlLsq  289 (683)
T KOG0696|consen  235 TFTFKLKPSDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQ  289 (683)
T ss_pred             eeEEecccccc-cceeEEEEecccccccccccceecccHHHHhhcchhhHHHHhhh
Confidence            99999987654 589999999999999999999999999985 4678889999976

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.84  E-value=5e-20  Score=152.76  Aligned_cols=114  Identities=32%  Similarity=0.468  Sum_probs=99.2

Q ss_pred             cceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC--CCceEecccccCCCCCeecceEEeceeC
Q psy12136        115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK--TSHRLRTKTCLRTINPEFHEKLTFYSVS  192 (399)
Q Consensus       115 ~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~~~rT~~~~~t~nP~wne~f~f~~v~  192 (399)
                      .+|+|.++++|+...++|.|+|++|++|+..+..+.+||||+|++.+...  ...++||++++++.||+|||+|.| .+.
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f-~i~   79 (133)
T cd04009           1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEF-NVP   79 (133)
T ss_pred             CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEE-Eec
Confidence            37999999999999999999999999999998889999999999986442  346899999999999999999999 455


Q ss_pred             cc--cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCC
Q psy12136        193 ET--DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH  229 (399)
Q Consensus       193 ~~--~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~  229 (399)
                      ..  .+....|.|+|||++..++ ++||++.++|+++..-
T Consensus        80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence            42  2345789999999999987 9999999999998743

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.83  E-value=1.9e-20  Score=155.66  Aligned_cols=121  Identities=27%  Similarity=0.396  Sum_probs=105.3

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136        117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL  196 (399)
Q Consensus       117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l  196 (399)
                      |+|+++++|++..++|.|.|++|+||+..+..+.+||||++++.+......+++|++++++.||+|||+|.| .++...+
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f-~i~~~~l   79 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSF-DVPAEQL   79 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEE-ECCHHHh
Confidence            899999999999999999999999999998888999999999987554445789999999999999999999 5777766


Q ss_pred             CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ....|.|+|||++..+. ++||++.+++++  .+...+.|+.|..
T Consensus        80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  122 (134)
T cd00276          80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA  122 (134)
T ss_pred             CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence            66889999999998777 999999999999  4445566666653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=5.9e-20  Score=151.14  Aligned_cols=121  Identities=29%  Similarity=0.371  Sum_probs=99.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeC-cccCCCceEEEEEEEcC
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS-ETDLSLQSLHILVLDDD  209 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~-~~~l~~~~L~~~V~d~~  209 (399)
                      +|+|+|++|++|++.+..+.+||||+|++.     .+++||++++++.||+|||.|.|. +. ...+....|.|+|||++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~   74 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD-----GQKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDR   74 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCC
Confidence            489999999999999988999999999995     367899999999999999999994 54 34444578999999999


Q ss_pred             CCC-C-cceeeEEecCcccC-CCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        210 KYG-H-DFLGEARFPLNRLR-PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       210 ~~~-~-~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      ..+ . ++||++.+++.++. .+.....|++|++...           ....+|+|.+++.+
T Consensus        75 ~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~-----------~~~~~G~l~l~~~~  125 (127)
T cd04022          75 RSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGL-----------FSRVRGEIGLKVYI  125 (127)
T ss_pred             CCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCC-----------CCCccEEEEEEEEE
Confidence            885 5 99999999999987 4556678888875211           12368999998865

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.83  E-value=1e-19  Score=148.45  Aligned_cols=120  Identities=29%  Similarity=0.413  Sum_probs=102.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK  210 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~  210 (399)
                      +|+|+|++|++|+..+..+.+||||++.+.    ....++|++++++.||+|||.|.| .+..  + ...|.|+|||++.
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~----~~~~~kT~~~~~t~nP~Wne~f~f-~v~~--~-~~~l~~~v~D~d~   72 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG----GKTVYKSKTIYKNLNPVWDEKFTL-PIED--V-TQPLYIKVFDYDR   72 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC----CEEEEEeeeccCCCCCccceeEEE-EecC--C-CCeEEEEEEeCCC
Confidence            589999999999999988999999999985    236789999999999999999999 4543  2 4689999999999


Q ss_pred             CCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        211 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       211 ~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      .++ ++||++.++++++..+.....|++|.+..            .....|+|.+.++|.|
T Consensus        73 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~------------~~~~~G~l~l~~~~~~  121 (121)
T cd04042          73 GLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPN------------SDEDLGYISLVVTLTP  121 (121)
T ss_pred             CCCCcceEEEEEEHHHcCCCCCeEEEEECCCCC------------CccCceEEEEEEEECC
Confidence            977 99999999999999888888999986411            0257899999998865

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.82  E-value=1.2e-19  Score=149.07  Aligned_cols=107  Identities=24%  Similarity=0.345  Sum_probs=89.0

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEecc---CcccccEEEEEEEeCCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI---TELSKQTLVITVWDKDY  351 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~l~~~~l~i~V~d~~~  351 (399)
                      +.|+|++|+||+.++..|.+||||+|.+.    ..+++|++++++.||+|||+|.|.+..   .++....|.|.|||++.
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~----~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~   76 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG----KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL   76 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC----CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence            47999999999999889999999999994    367899999999999999999999974   22456789999999998


Q ss_pred             CCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      ++++++||++.|++++.          ...++.....||+|.+.
T Consensus        77 ~~~d~~iG~~~i~l~~l----------~~~~~~~~~~W~~L~~~  110 (126)
T cd08682          77 LGLDKFLGQVSIPLNDL----------DEDKGRRRTRWFKLESK  110 (126)
T ss_pred             cCCCceeEEEEEEHHHh----------hccCCCcccEEEECcCC
Confidence            88899999999998652          22234456677777653

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.81  E-value=3.5e-19  Score=144.95  Aligned_cols=118  Identities=24%  Similarity=0.377  Sum_probs=97.3

Q ss_pred             EEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136        132 LHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK  210 (399)
Q Consensus       132 L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~  210 (399)
                      |.|+|++|+||++.+ ..|.+||||+|.+.    ....++|++++++.||+|||+|.| .++..   ...|.|.|||++.
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~----~~~~~kT~v~~kt~~P~WnE~F~f-~v~~~---~~~l~~~v~d~~~   73 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD----QEEVFRTKTVEKSLCPFFGEDFYF-EIPRT---FRHLSFYIYDRDV   73 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC----CccEEEeeEEECCCCCccCCeEEE-EcCCC---CCEEEEEEEECCC
Confidence            789999999999874 45789999999994    234689999999999999999999 56643   3689999999999


Q ss_pred             CCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        211 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       211 ~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      .++ ++||++.++++++..+...+.|++|+...           ......|+|++++++
T Consensus        74 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----------~~~~~~G~i~l~~~~  121 (121)
T cd08401          74 LRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVD-----------ADSEVQGKVHLELRL  121 (121)
T ss_pred             CCCCceEEEEEEEHHHccCCCCcEeeEEEEccC-----------CCCcccEEEEEEEEC
Confidence            987 99999999999998877778899997421           012358999998864

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.81  E-value=2.1e-19  Score=150.60  Aligned_cols=94  Identities=29%  Similarity=0.465  Sum_probs=81.3

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEec-------------cCcccc
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK-------------ITELSK  339 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~-------------~~~l~~  339 (399)
                      +|.|+|++|+||+.  .+|.+||||+|++.+...+ .+++|++++++.||+|||+|.|.+.             ..++..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            48999999999987  6788999999999875444 6889999999999999999999984             234455


Q ss_pred             cEEEEEEEeCCCCCCCeeeEEEEEccCCCC
Q psy12136        340 QTLVITVWDKDYGKSNDYLGCLELCCNSKG  369 (399)
Q Consensus       340 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~  369 (399)
                      ..|.|.|||++.++++++||++.|++....
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~  108 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLD  108 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEeccccc
Confidence            689999999998889999999999998754

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.81  E-value=3.4e-19  Score=147.76  Aligned_cols=110  Identities=35%  Similarity=0.475  Sum_probs=97.8

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC---CceEeecceeCCCCceecceEEEEeccC
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---KRKYKTGVKWKTLNPIFNEEFAIETKIT  335 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~  335 (399)
                      .|+|.+++.|.+....|.|+|++|++|+..+..+.+||||+|++.+...   ..+++|++++++.||+|||+|.|.+...
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~   81 (133)
T cd04009           2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE   81 (133)
T ss_pred             ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence            6999999999999999999999999999998889999999999975442   3689999999999999999999998743


Q ss_pred             c--ccccEEEEEEEeCCCCCCCeeeEEEEEccCCC
Q psy12136        336 E--LSKQTLVITVWDKDYGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       336 ~--l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~  368 (399)
                      +  +....|.|+|||++.++++++||++.|++++.
T Consensus        82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l  116 (133)
T cd04009          82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI  116 (133)
T ss_pred             hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHC
Confidence            2  34578999999999998899999999998763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.81  E-value=4e-19  Score=145.38  Aligned_cols=117  Identities=32%  Similarity=0.451  Sum_probs=100.8

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEE-eccCc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKITE  336 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~-v~~~~  336 (399)
                      .|+|.+++.|.+..+.|.|+|++|++|+..+..+.+||||++.+.+.... .+++|++++++.||.|||.|.|. +...+
T Consensus         1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~   80 (123)
T cd04035           1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED   80 (123)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence            48999999999999999999999999998888889999999999765433 78999999999999999999996 44345


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhh
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV  376 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~  376 (399)
                      +....|.|+|||++.+ ++++||++.+++++...+..+|+
T Consensus        81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~  119 (123)
T cd04035          81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQF  119 (123)
T ss_pred             hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEe
Confidence            5567899999999988 79999999999998665555544

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.81  E-value=5.8e-19  Score=143.55  Aligned_cols=116  Identities=24%  Similarity=0.356  Sum_probs=98.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |.|+|++|++|+..+..+.+||||++++.+..  ..++||++++++.||+|||+|.| .+...  ....|+|+|||++..
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f-~i~~~--~~~~l~v~v~d~d~~   76 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEF-RIQSQ--VKNVLELTVMDEDYV   76 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEE-EeCcc--cCCEEEEEEEECCCC
Confidence            78999999999999888899999999985432  36789999999999999999999 46543  246799999999998


Q ss_pred             CCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        212 GHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       212 ~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      ++++||++.+++.++..+.....|++|.+                ...|+|++.+.+
T Consensus        77 ~~~~iG~~~~~l~~l~~g~~~~~~~~L~~----------------~~~g~l~~~~~~  117 (119)
T cd04036          77 MDDHLGTVLFDVSKLKLGEKVRVTFSLNP----------------QGKEELEVEFLL  117 (119)
T ss_pred             CCcccEEEEEEHHHCCCCCcEEEEEECCC----------------CCCceEEEEEEe
Confidence            34999999999999998888889999864                347888887754

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.81  E-value=4.7e-19  Score=143.87  Aligned_cols=117  Identities=27%  Similarity=0.411  Sum_probs=96.8

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEeccccc-CCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~-~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      +.|+|+|++|++|+..+..+.+||||+|.+.     ..+++|+++. ++.||+|||.|.| .+...  ....|.|+|||+
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~~~~nP~Wne~f~f-~v~~~--~~~~l~i~v~d~   72 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG-----GVTKKTKTDFRGGQHPEWDEELRF-EITED--KKPILKVAVFDD   72 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEEC-----CCccccccccCCCCCCccCceEEE-EecCC--CCCEEEEEEEeC
Confidence            5799999999999999988999999999995     3677888875 4799999999999 46653  247899999999


Q ss_pred             CCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        209 DKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       209 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      +..++++||++.+++.++..+.....|++|...              ....|+|+++++|
T Consensus        73 ~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~--------------~~~~G~i~l~l~f  118 (118)
T cd08681          73 DKRKPDLIGDTEVDLSPALKEGEFDDWYELTLK--------------GRYAGEVYLELTF  118 (118)
T ss_pred             CCCCCcceEEEEEecHHHhhcCCCCCcEEeccC--------------CcEeeEEEEEEEC
Confidence            887679999999999998766666677777531              2468999999876

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.80  E-value=6.6e-19  Score=144.08  Aligned_cols=121  Identities=26%  Similarity=0.359  Sum_probs=98.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK  210 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~  210 (399)
                      +|+|+|++|++|...+..+.+||||+|++.     ..+.+|++++++.||+|||+|.| .+....  ...|.|+|||++.
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f-~~~~~~--~~~l~~~v~d~~~   72 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN-----GQTLETSVVKKSCYPRWNEVFEF-ELMEGA--DSPLSVEVWDWDL   72 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEEC-----CEEEeceeecCCCCCccCcEEEE-EcCCCC--CCEEEEEEEECCC
Confidence            589999999999999988899999999984     46789999999999999999999 354332  4789999999999


Q ss_pred             CCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136        211 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL  266 (399)
Q Consensus       211 ~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l  266 (399)
                      .++ ++||++.++|+++........|+.|......       ........|.|++.+
T Consensus        73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-------~~~~~~~~G~l~~~~  122 (123)
T cd04025          73 VSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-------EEESGGNLGSLRLKV  122 (123)
T ss_pred             CCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCC-------CccccCceEEEEEEe
Confidence            887 9999999999999876666778888643211       122346788888875

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=7.8e-19  Score=142.12  Aligned_cols=113  Identities=29%  Similarity=0.518  Sum_probs=98.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |+|+|++|++|+..+..+.+||||++++.     ..+++|++++++.||.|||.|.| .+...  ....|.|+|||++..
T Consensus         2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f-~~~~~--~~~~l~v~v~d~~~~   73 (116)
T cd08376           2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLG-----NEKYKSKVCSKTLNPQWLEQFDL-HLFDD--QSQILEIEVWDKDTG   73 (116)
T ss_pred             EEEEEEEEECCCCCCCCCCCCcEEEEEEC-----CEeEecccccCCCCCceeEEEEE-EecCC--CCCEEEEEEEECCCC
Confidence            78999999999999988999999999994     46789999999999999999999 45432  257899999999998


Q ss_pred             CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        212 GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       212 ~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      ++ ++||++.++|.++..+..+..|++|.+                 ..|+|++.+.|.
T Consensus        74 ~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-----------------~~G~~~~~~~~~  115 (116)
T cd08376          74 KKDEFIGRCEIDLSALPREQTHSLELELED-----------------GEGSLLLLLTLT  115 (116)
T ss_pred             CCCCeEEEEEEeHHHCCCCCceEEEEEccC-----------------CCcEEEEEEEec
Confidence            77 999999999999998888899999963                 258898887663

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.80  E-value=8.4e-19  Score=145.11  Aligned_cols=120  Identities=34%  Similarity=0.480  Sum_probs=102.7

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      +|+|++++.|+.  +.|+|+|++|++|+..+..+.+||||+|.+.+.......++|++++++.||.|||+|.|. +...+
T Consensus         1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~~   77 (131)
T cd04026           1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPAD   77 (131)
T ss_pred             CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCchh
Confidence            599999999976  899999999999999988889999999999865444578999999999999999999994 55433


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      . ...|.|.|||++..++ ++||++.++|.++... ....|++|.+
T Consensus        78 ~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~  121 (131)
T cd04026          78 K-DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLN  121 (131)
T ss_pred             c-CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence            2 4689999999998877 9999999999999754 5667777764

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=1e-18  Score=142.28  Aligned_cols=100  Identities=27%  Similarity=0.406  Sum_probs=87.8

Q ss_pred             EEEEEEEecC---CCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        132 LHVTLHRAKG---LRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       132 L~V~V~~a~~---L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      |.|+|++|++   |..++..|.+||||+|.+.     .++.||++++++.||+|||+|.|. +...   ...|.|+|||+
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g-----~~~~rTk~~~~~~nP~WnE~f~f~-v~~~---~~~l~v~V~d~   72 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG-----PKWVRTRTVEDSSNPRWNEQYTWP-VYDP---CTVLTVGVFDN   72 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEEC-----CEEeEcCcccCCCCCcceeEEEEE-ecCC---CCEEEEEEEEC
Confidence            8999999999   8889999999999999994     478899999999999999999994 5432   25899999999


Q ss_pred             CCC-------CCcceeeEEecCcccCCCcceeEEEeecc
Q psy12136        209 DKY-------GHDFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       209 ~~~-------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      +..       ++++||++.++|..+..+.....|++|..
T Consensus        73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence            887       34999999999999998888888999874

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>KOG0696|consensus

Probab=99.80  E-value=6.3e-20  Score=170.51  Aligned_cols=114  Identities=34%  Similarity=0.503  Sum_probs=104.3

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      ..+.+|+|.+.++.  ....|.|.|.+|+||.++|.+|.+||||++.|.|+.+...+++|++++.++||+|||+|.| .+
T Consensus       164 htE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf-~L  240 (683)
T KOG0696|consen  164 HTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTF-KL  240 (683)
T ss_pred             chhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEE-ec
Confidence            45789999998887  7889999999999999999999999999999999888888999999999999999999999 56


Q ss_pred             CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCC
Q psy12136        192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH  229 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~  229 (399)
                      .+.+- ...|.|+|||||+.++ +|+|..++.+++|...
T Consensus       241 kp~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K~  278 (683)
T KOG0696|consen  241 KPSDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA  278 (683)
T ss_pred             ccccc-cceeEEEEecccccccccccceecccHHHHhhc
Confidence            66655 5789999999999999 9999999999998754

>KOG1028|consensus

Probab=99.79  E-value=5.8e-19  Score=172.29  Aligned_cols=156  Identities=25%  Similarity=0.343  Sum_probs=124.5

Q ss_pred             ccccCCCccccccCCCcccCCCCCCCCCCCcccCCCCccccCCcccccCCcccccccccccCCCCCcceEEEEEEEEeCC
Q psy12136         49 ATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDST  128 (399)
Q Consensus        49 ~~~~~~~~~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~G~i~~~l~y~~~  128 (399)
                      .+|.++|+++|++.+|.+... +..      +.....             ...+.+..+.........|+|.++++|.+.
T Consensus       237 l~V~~~drfsr~~~iGev~~~-l~~------~~~~~~-------------~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~  296 (421)
T KOG1028|consen  237 LSVYDFDRFSRHDFIGEVILP-LGE------VDLLST-------------TLFWKDLQPSSTDSEELAGELLLSLCYLPT  296 (421)
T ss_pred             EEEEecCCcccccEEEEEEec-Ccc------cccccc-------------ceeeeccccccCCcccccceEEEEEEeecC
Confidence            678999999999999965322 111      111110             011111222212222233899999999999


Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      .++|.|.|++|+||..++..+..||||++++.++.....+++|.+++++.||+|||+|.| .|+.+.+....|.|+|||+
T Consensus       297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F-~vp~~~l~~~~l~l~V~d~  375 (421)
T KOG1028|consen  297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVF-DVPPEQLAEVSLELTVWDH  375 (421)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEE-eCCHHHhheeEEEEEEEEc
Confidence            999999999999999999999999999999998777778999999999999999999999 8999999889999999999


Q ss_pred             CCCCC-cceeeEEecCcc
Q psy12136        209 DKYGH-DFLGEARFPLNR  225 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~  225 (399)
                      +..+. ++||.+.+....
T Consensus       376 d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  376 DTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             ccccccceeeEEEecCCC
Confidence            99999 999998888775

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=1.6e-18  Score=146.14  Aligned_cols=130  Identities=25%  Similarity=0.258  Sum_probs=100.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccC-CCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~-t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      .|.|+|++|++|++.+..|.+||||+|.+.     .++++|+++.+ +.||+|||.|.| .+..  .....|.|.|||++
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~-----~~~~kTk~~~~~t~nP~WNE~F~f-~v~~--~~~~~l~v~V~d~~   72 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG-----NQVLRTRPSQTRNGNPSWNEELMF-VAAE--PFEDHLILSVEDRV   72 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEEC-----CEEeeeEeccCCCCCCcccCcEEE-EecC--ccCCeEEEEEEEec
Confidence            389999999999999999999999999995     37889998876 699999999999 4543  22468999999999


Q ss_pred             CCCC-cceeeEEecCcccCCC----cceeEEEeecccCCCCCccccccccccccceeEEEEEeeeccce
Q psy12136        210 KYGH-DFLGEARFPLNRLRPH----ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKR  273 (399)
Q Consensus       210 ~~~~-~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~  273 (399)
                      ..++ ++||++.++|.++..+    .....|++|.+.....     .+.......|+|+|.++|.+...
T Consensus        73 ~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~-----~~~k~~k~~g~l~l~i~~~~~~~  136 (150)
T cd04019          73 GPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAM-----EQKKKRKFASRIHLRLCLDGGYH  136 (150)
T ss_pred             CCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcc-----cccccCcccccEEEEEEecCcce
Confidence            8866 9999999999998643    3356778876532110     01122356899999999986543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.79  E-value=2.2e-18  Score=141.37  Aligned_cols=121  Identities=21%  Similarity=0.288  Sum_probs=96.5

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      ..|+|+|++|+||++.   +.+||||+|.+..    .+..||+++ ++.||.|||.|.|. +...++  ..|.|.|||++
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~----~~~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~   72 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE----VKVARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKA   72 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECC----EeEEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECC
Confidence            4699999999999875   4689999999942    345788875 68999999999994 433332  46889999999


Q ss_pred             CCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeecc
Q psy12136        210 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK  271 (399)
Q Consensus       210 ~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~  271 (399)
                      ..++ ++||++.++|..+..+.....|+.|.+...          ......|+|+++++|.+.
T Consensus        73 ~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~----------~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          73 KRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASP----------LKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             CCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCC----------CCCCcCcEEEEEEEEEcc
Confidence            9887 999999999999988877788888865211          123578999999999763

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.79  E-value=1.8e-18  Score=143.53  Aligned_cols=117  Identities=26%  Similarity=0.435  Sum_probs=95.0

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      -+.|+|+|++|++|+..+..+.+||||++++.     ...+||++++++.||.|||+|.| .+..  .....|.|+|||+
T Consensus        14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f-~v~~--~~~~~l~i~V~D~   85 (136)
T cd08375          14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQF-FVKD--LEQDVLCITVFDR   85 (136)
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEE-EecC--ccCCEEEEEEEEC
Confidence            46899999999999999988999999999994     46899999999999999999999 4543  3357899999999


Q ss_pred             CCCCC-cceeeEEecCcccCCC-----cceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        209 DKYGH-DFLGEARFPLNRLRPH-----ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~~~-----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      +..++ ++||++.++|.++...     ...+.|+.+.                ....|+|++.+.++
T Consensus        86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~----------------~~~~g~i~l~~~~~  136 (136)
T cd08375          86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH----------------EVPTGEVVVKLDLQ  136 (136)
T ss_pred             CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc----------------cccceeEEEEEEeC
Confidence            99887 9999999999998752     1222333331                25689999988763

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.78  E-value=3e-18  Score=140.72  Aligned_cols=122  Identities=28%  Similarity=0.381  Sum_probs=100.1

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |.|+|++|+||+.  ..+.+||||++++..   ...++||++++++.||+|||.|.| .+...   ...|.|+|||++..
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~Wne~f~f-~~~~~---~~~l~~~v~d~~~~   71 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE---PPQKYQSSTQKNTSNPFWDEHFLF-ELSPN---SKELLFEVYDNGKK   71 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECC---CCcEEEeEEEecCCCCccCceEEE-EeCCC---CCEEEEEEEECCCC
Confidence            6799999999998  678899999999842   135789999999999999999999 46533   46799999999998


Q ss_pred             CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeeccc
Q psy12136        212 GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKK  272 (399)
Q Consensus       212 ~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~  272 (399)
                      ++ ++||++.+++.++........|++|.....          ......|+|.+.+.|.+..
T Consensus        72 ~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~----------~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          72 SDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPY----------EGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             CCCceEEEEEEeHHHhccCCceeEEEEecCCCC----------CCCCcceEEEEEEEEeccc
Confidence            87 999999999999998777778888864210          1135799999999987653

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>KOG1328|consensus

Probab=99.78  E-value=5.2e-20  Score=179.68  Aligned_cols=96  Identities=38%  Similarity=0.580  Sum_probs=85.6

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC---ceEeecceeCCCCceecceEEEEeccCccc--ccEEEEEE
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKWKTLNPIFNEEFAIETKITELS--KQTLVITV  346 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~l~--~~~l~i~V  346 (399)
                      ..+|.|.|+.|+++.+.|.+|.+||||.|++++...-   ...+|+|+++|+||+|+|+|+|.|+++...  ...|.|+|
T Consensus       946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred             ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence            4668899999999999999999999999999875432   578999999999999999999999976554  46899999


Q ss_pred             EeCCCCCCCeeeEEEEEccCC
Q psy12136        347 WDKDYGKSNDYLGCLELCCNS  367 (399)
Q Consensus       347 ~d~~~~~~d~~lG~~~i~l~~  367 (399)
                      +|+|-.+.|+|-|++.+.|+.
T Consensus      1026 MDHD~L~sNDFaGEA~L~Lg~ 1046 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGD 1046 (1103)
T ss_pred             eccceecccccchHHHHhhCC
Confidence            999999999999999999885

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.78  E-value=2e-18  Score=142.89  Aligned_cols=107  Identities=40%  Similarity=0.692  Sum_probs=94.2

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      +|+|++++.|.+  +.|.|+|++|++|+..+..+.+||||+|.+.+.... .+++|++++++.||.|||+|.|.+...+ 
T Consensus         1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~-   77 (131)
T cd04026           1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD-   77 (131)
T ss_pred             CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh-
Confidence            589999999988  889999999999999888889999999999754433 7899999999999999999999987543 


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~  368 (399)
                      ....|.|+|||++..+++++||++.+++.+.
T Consensus        78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l  108 (131)
T cd04026          78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSEL  108 (131)
T ss_pred             cCCEEEEEEEECCCCCCcceeEEEEEeHHHh
Confidence            2468999999999888899999999998764

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=172.21  Aligned_cols=239  Identities=29%  Similarity=0.375  Sum_probs=173.6

Q ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEE
Q psy12136        125 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHIL  204 (399)
Q Consensus       125 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~  204 (399)
                      |+...+.++|.|..|.+|......+.+|||++|.+.    +..++||-....++||+||+....+.+++    ...|.+.
T Consensus       706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n----~~~k~rti~~~~~~npiw~~i~Yv~v~sk----~~r~~l~  777 (1227)
T COG5038         706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN----NLVKYRTIYGSSTLNPIWNEILYVPVTSK----NQRLTLE  777 (1227)
T ss_pred             ecCccceEEEEeehhhcccccccCcccccceEEEec----ceeEEEEecccCccccceeeeEEEEecCC----ccEEeee
Confidence            344458899999999999987778999999999996    35788998888999999999876643322    3568889


Q ss_pred             EEEcCCCCC-cceeeEEecCcccCCCcc---------------------------eeEEEeecccC---CC---C-----
Q psy12136        205 VLDDDKYGH-DFLGEARFPLNRLRPHIS---------------------------RDLCLNLCKHY---PV---P-----  245 (399)
Q Consensus       205 V~d~~~~~~-~~lG~~~i~l~~l~~~~~---------------------------~~~~~~L~~~~---~~---~-----  245 (399)
                      ++|+...++ ..||++.++++++.....                           .++.+.+.+..   .+   .     
T Consensus       778 ~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~  857 (1227)
T COG5038         778 CMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKV  857 (1227)
T ss_pred             eecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhh
Confidence            999999888 999999999988754100                           01111111100   00   0     


Q ss_pred             --------------Cccccccc----------------------------------------------------------
Q psy12136        246 --------------REEEVWGE----------------------------------------------------------  253 (399)
Q Consensus       246 --------------~~~~~~~~----------------------------------------------------------  253 (399)
                                    .+...+..                                                          
T Consensus       858 ~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~  937 (1227)
T COG5038         858 SSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFF  937 (1227)
T ss_pred             hhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEe
Confidence                          00000000                                                          


Q ss_pred             -----------------------------------------c------------------------------ccccceeE
Q psy12136        254 -----------------------------------------E------------------------------ECWQHGKI  262 (399)
Q Consensus       254 -----------------------------------------~------------------------------~~~~~G~l  262 (399)
                                                               +                              .......+
T Consensus       938 Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~ 1017 (1227)
T COG5038         938 DDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKV 1017 (1227)
T ss_pred             cCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceE
Confidence                                                     0                              00001233


Q ss_pred             EEEEeeecc------------ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEE
Q psy12136        263 FLTLCFSTK------------KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI  330 (399)
Q Consensus       263 ~l~l~~~~~------------~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f  330 (399)
                      .+++.|.|.            +|.|.|.+..|.||+..+.+|.+||||++.+.+   ++.++|+++++++||+|||.|..
T Consensus      1018 ~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~---k~vyktkv~KktlNPvwNEe~~i 1094 (1227)
T COG5038        1018 LVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE---KSVYKTKVVKKTLNPVWNEEFTI 1094 (1227)
T ss_pred             EEEEEEeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecc---eecccccchhccCCCCccccceE
Confidence            444444442            799999999999999999999999999999953   36899999999999999999999


Q ss_pred             EeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC-Ccchhhh
Q psy12136        331 ETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWV  376 (399)
Q Consensus       331 ~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~-~~~~~w~  376 (399)
                      +|...  ....+.|.|+||+...+++.||.+.|+|.... .....|.
T Consensus      1095 ~v~~r--~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~ 1139 (1227)
T COG5038        1095 EVLNR--VKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSN 1139 (1227)
T ss_pred             eeecc--ccceEEEEEeecccCCCccccccccccHhhcCcCCcccee
Confidence            98743  35689999999999999999999999998754 3344443

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=2.9e-18  Score=139.54  Aligned_cols=113  Identities=29%  Similarity=0.413  Sum_probs=91.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |.|+|++|+||+..    .+||||+|++.     ..+.||++++++.||+|||+|.|. +.  .+....|.|+|||++..
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~-----~~~~kT~v~~~t~nP~Wne~F~f~-~~--~~~~~~L~~~v~d~d~~   69 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLG-----NYKGSTKAIERTSNPEWNQVFAFS-KD--RLQGSTLEVSVWDKDKA   69 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEEC-----CccccccccCCCCCCccceEEEEE-cC--CCcCCEEEEEEEeCCCC
Confidence            89999999999988    68999999995     367899999999999999999994 33  33457899999999987


Q ss_pred             CCcceeeEEecCcccCCCc-----ceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        212 GHDFLGEARFPLNRLRPHI-----SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       212 ~~~~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      ++++||++.++|+++....     ....|++|....            .....|+|++++.|
T Consensus        70 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~------------~~~~~G~i~l~~~~  119 (121)
T cd08378          70 KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK------------GGRVGGELMLAVWF  119 (121)
T ss_pred             cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC------------CCccceEEEEEEEe
Confidence            5599999999999987532     234677775421            12578999999876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.78  E-value=3.2e-18  Score=138.44  Aligned_cols=100  Identities=13%  Similarity=0.283  Sum_probs=82.8

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeC-CCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      |.|.|+|++|++++..+ .|.+||||++.++    ..+++|+++.+ +.||+|||+|.|.+...   ...|.|+|||++.
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg----~~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~   73 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVG----HAVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERA   73 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEEC----CEEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCC
Confidence            68999999999987766 7899999999994    36789999865 79999999999999642   3579999999999


Q ss_pred             CCCCeeeEEEEEccCC---CCCcchhhhhhhc
Q psy12136        352 GKSNDYLGCLELCCNS---KGDRLRHWVDMMK  380 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~---~~~~~~~w~~l~~  380 (399)
                      +++|++||.+.|++..   .+...+.|++|..
T Consensus        74 ~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~  105 (121)
T cd04016          74 FTMDERIAWTHITIPESVFNGETLDDWYSLSG  105 (121)
T ss_pred             CcCCceEEEEEEECchhccCCCCccccEeCcC
Confidence            9999999999999953   2344566665543

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.78  E-value=4.6e-18  Score=144.73  Aligned_cols=122  Identities=25%  Similarity=0.331  Sum_probs=98.9

Q ss_pred             CCEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEEecCCCCCceEecccccCCC
Q psy12136        129 TCSLHVTLHRAKGLRAMD------------------------------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI  178 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~------------------------------~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~  178 (399)
                      ++.|.|+|++|++|+.+|                              ..|.+||||+|.+..    ....||++++++.
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~----~~~~rT~v~~~~~   81 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG----ARVARTRVIENSE   81 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC----eEeeEEEEeCCCC
Confidence            478999999999999987                              246789999999952    2457999999999


Q ss_pred             CCeecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCcccccccccccc
Q psy12136        179 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQ  258 (399)
Q Consensus       179 nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  258 (399)
                      ||+|||+|.|. +...   ...|.|.|||++..+.++||++.++++++..+.....|++|......          ....
T Consensus        82 nP~WnE~F~~~-~~~~---~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~----------~~~~  147 (158)
T cd04015          82 NPVWNESFHIY-CAHY---ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGK----------PPKP  147 (158)
T ss_pred             CCccceEEEEE-ccCC---CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCC----------CCCC
Confidence            99999999993 4432   35799999999988779999999999999888778889988652111          1245


Q ss_pred             ceeEEEEEee
Q psy12136        259 HGKIFLTLCF  268 (399)
Q Consensus       259 ~G~l~l~l~~  268 (399)
                      .|+|++++.|
T Consensus       148 ~~~l~v~~~f  157 (158)
T cd04015         148 GAKIRVSLQF  157 (158)
T ss_pred             CCEEEEEEEE
Confidence            6899999887

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.77  E-value=9.5e-19  Score=140.15  Aligned_cols=107  Identities=28%  Similarity=0.358  Sum_probs=89.3

Q ss_pred             EEEEEEeeecCCCCCC-CCCCCcEEEEEEecCCCCceEeecceeCCCCcee-cceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        275 LIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~-~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      |.|+|++|++|+.++. .+.+||||++++++    .+++|++++++.||.| ||+|.|.+...++....|.|+|||++.+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~----~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~   76 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS----TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY   76 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC----eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC
Confidence            6799999999998884 78899999999953    7899999999999999 9999999987666667999999999999


Q ss_pred             CCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        353 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       353 ~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      +++++||++.+++.+....         .+...+.+||+|..
T Consensus        77 ~~~~~iG~~~~~l~~l~~~---------~~~~~~~~w~~l~~  109 (110)
T cd08688          77 SANDAIGKVYIDLNPLLLK---------DSVSQISGWFPIYD  109 (110)
T ss_pred             CCCCceEEEEEeHHHhccc---------CCccccCCeEEccc
Confidence            8999999999998763210         12334677777754

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.77  E-value=4.7e-18  Score=141.01  Aligned_cols=122  Identities=28%  Similarity=0.438  Sum_probs=96.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecC--CCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL--TKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~--~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      |+|+|++|++|+..+..+.+||||+|++.+.  .....+.+|++++++.||+|||+|.| .+...   ...|.|+|||++
T Consensus         2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f-~~~~~---~~~l~~~v~d~~   77 (133)
T cd04033           2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF-RVNPR---EHRLLFEVFDEN   77 (133)
T ss_pred             EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEE-EEcCC---CCEEEEEEEECC
Confidence            8999999999999998899999999999753  11223679999999999999999999 45543   357999999999


Q ss_pred             CCCC-cceeeEEecCcccCCCcce------eEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        210 KYGH-DFLGEARFPLNRLRPHISR------DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       210 ~~~~-~~lG~~~i~l~~l~~~~~~------~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      ..++ ++||++.+++.++......      ..|++|++      ..     ......|+|++++.|
T Consensus        78 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~------~~-----~~~~~~G~l~~~~~~  132 (133)
T cd04033          78 RLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP------RS-----SKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCCCCeeEEEEEEHHHCCCcCccccccccchheeeee------cC-----CCCcceeEEEEEEee
Confidence            9887 9999999999998865432      34555543      11     112569999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=3.4e-18  Score=144.09  Aligned_cols=108  Identities=23%  Similarity=0.249  Sum_probs=87.5

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeC-CCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      .|.|+|++|++|+.++..|.+||||++.+++    .+.+|+++.+ +.||+|||.|.|.+.  +.....|.|.|||++..
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~----~~~kTk~~~~~t~nP~WNE~F~f~v~--~~~~~~l~v~V~d~~~~   74 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN----QVLRTRPSQTRNGNPSWNEELMFVAA--EPFEDHLILSVEDRVGP   74 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECC----EEeeeEeccCCCCCCcccCcEEEEec--CccCCeEEEEEEEecCC
Confidence            4899999999999999999999999999953    6788998866 699999999999986  33346899999999988


Q ss_pred             CCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        353 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       353 ~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      +++++||++.|++++...+        ..++..+.+||+|++.
T Consensus        75 ~~dd~lG~v~i~L~~l~~~--------~~~~~~~~~W~~L~~~  109 (150)
T cd04019          75 NKDEPLGRAVIPLNDIERR--------VDDRPVPSRWFSLERP  109 (150)
T ss_pred             CCCCeEEEEEEEHHHCccc--------CCCCccCCceEECcCC
Confidence            8899999999999875422        1223445666666654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=3.9e-18  Score=138.88  Aligned_cols=99  Identities=16%  Similarity=0.218  Sum_probs=82.6

Q ss_pred             eEEEEEEeeec---CCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136        274 ALIVNLIKCTN---LIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       274 ~L~v~v~~a~~---L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      .|.|+|++|+|   |..++..|.+||||++.++    .++.+|++++++.||+|||+|.|.+..  . ...|.|+|||++
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g----~~~~rTk~~~~~~nP~WnE~f~f~v~~--~-~~~l~v~V~d~d   73 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG----PKWVRTRTVEDSSNPRWNEQYTWPVYD--P-CTVLTVGVFDNS   73 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEEC----CEEeEcCcccCCCCCcceeEEEEEecC--C-CCEEEEEEEECC
Confidence            37899999999   8888889999999999994    367899999999999999999999863  2 358999999998


Q ss_pred             CC------CCCeeeEEEEEccCCC--CCcchhhhhhh
Q psy12136        351 YG------KSNDYLGCLELCCNSK--GDRLRHWVDMM  379 (399)
Q Consensus       351 ~~------~~d~~lG~~~i~l~~~--~~~~~~w~~l~  379 (399)
                      ..      .+|++||++.|++.+.  +....+|++|.
T Consensus        74 ~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~  110 (126)
T cd08379          74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLL  110 (126)
T ss_pred             CccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence            76      3799999999998864  33344555554

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=8.8e-18  Score=138.41  Aligned_cols=122  Identities=28%  Similarity=0.438  Sum_probs=97.8

Q ss_pred             CEEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEE
Q psy12136        130 CSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD  207 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d  207 (399)
                      +.|+|+|++|++|+..+.  .+.+||||+|.+.     ..+++|++++++.||+|||.|.| .+..  .....|.|+|||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~~P~Wne~f~~-~~~~--~~~~~l~i~v~d   72 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-----AQRFKTQTIPNTLNPKWNYWCEF-PIFS--AQNQLLKLILWD   72 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-----CEEEecceecCCcCCccCCcEEE-EecC--CCCCEEEEEEEE
Confidence            479999999999999988  7899999999984     46889999999999999999999 3543  335789999999


Q ss_pred             cCCCCC-cceeeEEecCcccCC---CcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        208 DDKYGH-DFLGEARFPLNRLRP---HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       208 ~~~~~~-~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      ++..++ ++||++.++|.++..   ......|+.|.....         .......|+|++++.+
T Consensus        73 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~---------~~~~~~~G~i~l~~~~  128 (128)
T cd04024          73 KDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP---------GKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCccc---------CccccccceEEEEEEC
Confidence            999877 999999999999873   233467777764211         1223579999998753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.76  E-value=5.4e-18  Score=134.59  Aligned_cols=103  Identities=28%  Similarity=0.326  Sum_probs=87.9

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  354 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~  354 (399)
                      |.|+|++|++|+..+..+.+||||++++.+    .+++|++++++.||+|||.|.|.+..  .....|.|+|||++.   
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~----~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~~l~v~v~d~~~---   72 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK----TTQKSKVKERTNNPVWEEGFTFLVRN--PENQELEIEVKDDKT---   72 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECC----EEEeCccccCCCCCcccceEEEEeCC--CCCCEEEEEEEECCC---
Confidence            789999999999988889999999999953    78899999999999999999999974  334689999999875   


Q ss_pred             CeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCC
Q psy12136        355 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  396 (399)
Q Consensus       355 d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~  396 (399)
                      +++||++.|++.+          +...++..+.+||+|.+..
T Consensus        73 ~~~iG~~~i~l~~----------l~~~~~~~~~~w~~L~~~g  104 (105)
T cd04050          73 GKSLGSLTLPLSE----------LLKEPDLTLDQPFPLDNSG  104 (105)
T ss_pred             CCccEEEEEEHHH----------hhccccceeeeeEecCCCC
Confidence            7899999999754          4444556688999998754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.76  E-value=3.8e-18  Score=136.67  Aligned_cols=102  Identities=26%  Similarity=0.413  Sum_probs=87.9

Q ss_pred             EEEEEEEecCCCCCCC-CCCCCcEEEEEEecCCCCCceEecccccCCCCCee-cceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        132 LHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~w-ne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      |.|+|++|++|+.++. .+.+||||+|++.     ..++||++++++.||+| ||.|.| .++..++....|.|+|||++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~-----~~~~kT~v~~~~~nP~W~ne~f~f-~i~~~~l~~~~l~i~V~d~d   74 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG-----STTYKTDVVKKSLNPVWNSEWFRF-EVDDEELQDEPLQIRVMDHD   74 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC-----CeeEecceecCCCCCcccCcEEEE-EcChHHcCCCeEEEEEEeCC
Confidence            6899999999999884 6889999999995     37899999999999999 999999 57776666679999999999


Q ss_pred             CCCC-cceeeEEecCcccCCC---cceeEEEeec
Q psy12136        210 KYGH-DFLGEARFPLNRLRPH---ISRDLCLNLC  239 (399)
Q Consensus       210 ~~~~-~~lG~~~i~l~~l~~~---~~~~~~~~L~  239 (399)
                      ..++ ++||++.+++.++...   .....|++|.
T Consensus        75 ~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          75 TYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CCCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            9888 9999999999999862   3355677664

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.76  E-value=5e-18  Score=139.68  Aligned_cols=91  Identities=26%  Similarity=0.476  Sum_probs=79.4

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEecc-CcccccEEEEEEEeCCCC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-TELSKQTLVITVWDKDYG  352 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~l~~~~l~i~V~d~~~~  352 (399)
                      +|.|+|++|++|+..+..|.+||||++++.+    .+++|+++.++.||+|||.|.|.+.. ..+....|.|+|||++.+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~----~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~   76 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG----QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS   76 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC----EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence            4899999999999998889999999999853    67899999999999999999999863 223346899999999987


Q ss_pred             C-CCeeeEEEEEccCCC
Q psy12136        353 K-SNDYLGCLELCCNSK  368 (399)
Q Consensus       353 ~-~d~~lG~~~i~l~~~  368 (399)
                      + ++++||++.|++++.
T Consensus        77 ~~~d~~lG~v~i~l~~l   93 (127)
T cd04022          77 GRRRSFLGRVRISGTSF   93 (127)
T ss_pred             cCCCCeeeEEEEcHHHc
Confidence            6 799999999999864

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.76  E-value=3.9e-18  Score=143.20  Aligned_cols=106  Identities=23%  Similarity=0.348  Sum_probs=85.6

Q ss_pred             eEEEEEEeeecCCCCCCCC--------------CCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccc
Q psy12136        274 ALIVNLIKCTNLIPMDSNG--------------FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK  339 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g--------------~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~  339 (399)
                      .|.|+|++|++|+.++..+              .+||||+|.+.+    .+.+|++++++.||+|||+|.|.+..... .
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g----~~~kT~v~~~t~nPvWNE~f~f~v~~p~~-~   75 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG----QKVKTSVKKNSYNPEWNEQIVFPEMFPPL-C   75 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC----EeeecceEcCCCCCCcceEEEEEeeCCCc-C
Confidence            4789999999999988543              689999999853    56799999999999999999999754433 3


Q ss_pred             cEEEEEEEeCCCCCCCeeeEEEEEccCCC-CCcch--------hhhhhhcCCCC
Q psy12136        340 QTLVITVWDKDYGKSNDYLGCLELCCNSK-GDRLR--------HWVDMMKYPDH  384 (399)
Q Consensus       340 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~-~~~~~--------~w~~l~~~p~~  384 (399)
                      ..|.|+|||++..++|++||++.|++... ..+.+        +|+.|+..|+.
T Consensus        76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~  129 (151)
T cd04018          76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE  129 (151)
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence            68999999999998999999999998863 34443        55555555543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.76  E-value=3.3e-18  Score=137.19  Aligned_cols=94  Identities=28%  Similarity=0.429  Sum_probs=82.2

Q ss_pred             eeEEEEEEeeecCCCCCCC-CCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcc-cccEEEEEEEeCC
Q psy12136        273 RALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITEL-SKQTLVITVWDKD  350 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~-g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~V~d~~  350 (399)
                      |.|.|+|++|++|+..+.. +.+||||+|++...+ +..++|++++++.||+|||+|.|.+...++ ....|.|+|||++
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG-KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC-CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence            5799999999999999887 899999999986532 367899999999999999999998875443 3468999999999


Q ss_pred             CCCCCeeeEEEEEccCC
Q psy12136        351 YGKSNDYLGCLELCCNS  367 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~  367 (399)
                      .++.+++||++.+++.+
T Consensus        80 ~~~~dd~lG~~~i~l~~   96 (111)
T cd04041          80 RFTADDRLGRVEIDLKE   96 (111)
T ss_pred             CCCCCCcceEEEEEHHH
Confidence            99899999999999876

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.76  E-value=1.1e-17  Score=135.41  Aligned_cols=103  Identities=37%  Similarity=0.553  Sum_probs=86.9

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  354 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~  354 (399)
                      ++|.|++|++|+..+..+.+||||++++.    ..+++|++++++.||.|||+|.|.+..  .....|.|+|||++..++
T Consensus         2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~----~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~~l~v~v~d~~~~~~   75 (116)
T cd08376           2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLG----NEKYKSKVCSKTLNPQWLEQFDLHLFD--DQSQILEIEVWDKDTGKK   75 (116)
T ss_pred             EEEEEEEEECCCCCCCCCCCCcEEEEEEC----CEeEecccccCCCCCceeEEEEEEecC--CCCCEEEEEEEECCCCCC
Confidence            78999999999999888999999999994    367899999999999999999999863  235789999999999889


Q ss_pred             CeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        355 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       355 d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      +++||++.+++++..            ++.....|++|.+.
T Consensus        76 ~~~iG~~~~~l~~l~------------~~~~~~~w~~L~~~  104 (116)
T cd08376          76 DEFIGRCEIDLSALP------------REQTHSLELELEDG  104 (116)
T ss_pred             CCeEEEEEEeHHHCC------------CCCceEEEEEccCC
Confidence            999999999987643            13345666666654

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.76  E-value=3.8e-18  Score=136.85  Aligned_cols=95  Identities=26%  Similarity=0.413  Sum_probs=82.4

Q ss_pred             CEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC-CCceEEEEEEE
Q psy12136        130 CSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL-SLQSLHILVLD  207 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l-~~~~L~~~V~d  207 (399)
                      +.|+|+|++|++|+..+.. +.+||||+|++.+.+  ...++|++++++.||+|||.|.| .+...++ ....|.|+|||
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f-~~~~~~~~~~~~l~~~V~d   77 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFV-LVTPDEVKAGERLSCRLWD   77 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEE-EeCchhccCCCEEEEEEEe
Confidence            5799999999999999987 899999999996533  35689999999999999999999 4554433 34689999999


Q ss_pred             cCCCCC-cceeeEEecCcccC
Q psy12136        208 DDKYGH-DFLGEARFPLNRLR  227 (399)
Q Consensus       208 ~~~~~~-~~lG~~~i~l~~l~  227 (399)
                      ++..++ ++||++.+++.++.
T Consensus        78 ~d~~~~dd~lG~~~i~l~~l~   98 (111)
T cd04041          78 SDRFTADDRLGRVEIDLKELI   98 (111)
T ss_pred             CCCCCCCCcceEEEEEHHHHh
Confidence            999987 99999999999997

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>KOG1030|consensus

Probab=99.75  E-value=3.8e-18  Score=141.05  Aligned_cols=97  Identities=36%  Similarity=0.631  Sum_probs=86.0

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      -+.|+|+|++|.||..+|..+.+||||.+.+.     .++.||+++++++||+|||.|.| .+...   ...|+++|||+
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg-----~q~lkT~~v~~n~NPeWNe~ltf-~v~d~---~~~lkv~VyD~   75 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG-----NQKLKTRVVYKNLNPEWNEELTF-TVKDP---NTPLKVTVYDK   75 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEEC-----CeeeeeeeecCCCCCcccceEEE-EecCC---CceEEEEEEeC
Confidence            36799999999999999988999999999994     68999999999999999999999 45544   47899999999


Q ss_pred             CCCCC-cceeeEEecCcccCCCcceeE
Q psy12136        209 DKYGH-DFLGEARFPLNRLRPHISRDL  234 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~~~~~~~~  234 (399)
                      |+++. |+||+++|+|..+.......+
T Consensus        76 D~fs~dD~mG~A~I~l~p~~~~~~~~~  102 (168)
T KOG1030|consen   76 DTFSSDDFMGEATIPLKPLLEAQKMDY  102 (168)
T ss_pred             CCCCcccccceeeeccHHHHHHhhhhc
Confidence            99988 999999999999887654443

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.75  E-value=8.3e-18  Score=134.95  Aligned_cols=108  Identities=25%  Similarity=0.280  Sum_probs=89.1

Q ss_pred             ccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEecc--CcccccEEEEEEE
Q psy12136        270 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI--TELSKQTLVITVW  347 (399)
Q Consensus       270 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~l~~~~l~i~V~  347 (399)
                      |+.+.|.|+|++|++|+    ++.+||||++++.+    .+++|++++++.||.|||+|.|.+..  .++.+..|.|+||
T Consensus         1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~   72 (111)
T cd04011           1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGG----QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY   72 (111)
T ss_pred             CCcEEEEEEEEEcccCC----CCCCCCEEEEEECC----EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence            34678999999999997    57899999999963    57789999999999999999999743  2344578999999


Q ss_pred             eCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        348 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       348 d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      |++.++++++||++.|++++...+..|.         ...+|++|..
T Consensus        73 d~~~~~~~~~iG~~~i~l~~v~~~~~~~---------~~~~w~~L~~  110 (111)
T cd04011          73 DSRSLRSDTLIGSFKLDVGTVYDQPDHA---------FLRKWLLLTD  110 (111)
T ss_pred             cCcccccCCccEEEEECCccccCCCCCc---------ceEEEEEeeC
Confidence            9998888999999999998754333332         4689999865

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.75  E-value=2.1e-17  Score=134.77  Aligned_cols=115  Identities=27%  Similarity=0.390  Sum_probs=95.4

Q ss_pred             CEEEEEEEEecCCCCCCC------CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEE
Q psy12136        130 CSLHVTLHRAKGLRAMDI------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI  203 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~------~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~  203 (399)
                      +.|.|+|++|+||+..+.      .+.+||||+|++.     ...++|++++++.||+|||.|.| .+...  ....|.|
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~~P~W~e~f~~-~v~~~--~~~~l~i   72 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG-----AQTFKSKVIKENLNPKWNEVYEA-VVDEV--PGQELEI   72 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC-----CEeEEccccCCCCCCcccceEEE-EeCCC--CCCEEEE
Confidence            468999999999998875      3689999999995     37899999999999999999999 35432  3578999


Q ss_pred             EEEEcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        204 LVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       204 ~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      +|||++..++++||++.+++.++........|++|..                ...|+|++.+.+
T Consensus        73 ~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~----------------~~~G~~~~~~~~  121 (121)
T cd08391          73 ELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLED----------------VKSGRLHLKLEW  121 (121)
T ss_pred             EEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcC----------------CCCceEEEEEeC
Confidence            9999998834999999999999987776778888853                257889887653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.75  E-value=4.6e-17  Score=136.70  Aligned_cols=125  Identities=18%  Similarity=0.243  Sum_probs=98.0

Q ss_pred             EEEEEEEecC--CCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc------cCCCceEEE
Q psy12136        132 LHVTLHRAKG--LRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET------DLSLQSLHI  203 (399)
Q Consensus       132 L~V~V~~a~~--L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~------~l~~~~L~~  203 (399)
                      ..++|+.|++  |+..+..+.+||||++++..+....++.||+++++|+||+|||+|.| .|+..      .+....|.|
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f-~I~~~~~~~~R~l~~~~L~~   82 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKL-NINRKHRSFQRVFKRHGLKF   82 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEE-EeccccchhhhhccCCcEEE
Confidence            4556666666  77888788899999999843233568999999999999999999999 57654      355678999


Q ss_pred             EEEEcCCC-CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        204 LVLDDDKY-GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       204 ~V~d~~~~-~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      +|||.+.+ ++ ++||++.++|+.+........|++|.+.             .....|+|++.++.-.
T Consensus        83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------------~k~~Gg~l~v~ir~r~  138 (155)
T cd08690          83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------------RKATGGKLEVKVRLRE  138 (155)
T ss_pred             EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------------CCCcCCEEEEEEEecC
Confidence            99999986 44 9999999999999877666678887531             1256788888876643

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.75  E-value=2.3e-17  Score=134.44  Aligned_cols=117  Identities=28%  Similarity=0.455  Sum_probs=94.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |.|+|++|++|++.+..|.+||||+|.+..    ....||++++++.||+|||.|.| .+...   ...|.|.|||++..
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~-~~~~~---~~~l~v~v~d~~~~   73 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN----EVIIRTATVWKTLNPFWGEEYTV-HLPPG---FHTVSFYVLDEDTL   73 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECC----EeeeeeeeEcCCCCCcccceEEE-eeCCC---CCEEEEEEEECCCC
Confidence            789999999999999999999999999842    23579999999999999999999 45432   36899999999998


Q ss_pred             CC-cceeeEEecCcccCCCc-ceeEEEeecccCCCCCccccccccccccceeEEEEEe
Q psy12136        212 GH-DFLGEARFPLNRLRPHI-SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLC  267 (399)
Q Consensus       212 ~~-~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~  267 (399)
                      ++ ++||++.+++.++.... ....|++|.+..           ......|+|++.+.
T Consensus        74 ~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~-----------~~~~~~G~i~l~~~  120 (121)
T cd04054          74 SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVD-----------PDEEVQGEIHLELS  120 (121)
T ss_pred             CCCCEEEEEEEcHHHhccCCCCCCcEEECeeeC-----------CCCccccEEEEEEE
Confidence            88 99999999998887532 356788886421           11246799988764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.75  E-value=2.1e-17  Score=134.48  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=84.6

Q ss_pred             EEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136        275 LIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  353 (399)
Q Consensus       275 L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~  353 (399)
                      |.|.|++|+||+.++ ..|.+||||+|.+.   +...++|++++++.||.|||+|.|.+...   ...|.|.|||++.++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~---~~~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~~   75 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD---QEEVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVLR   75 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC---CccEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCCC
Confidence            678999999999874 46789999999994   22578999999999999999999999732   368999999999998


Q ss_pred             CCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        354 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       354 ~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      ++++||++.+++++...            +.....|++|++.
T Consensus        76 ~~~~iG~~~i~l~~l~~------------~~~~~~w~~L~~~  105 (121)
T cd08401          76 RDSVIGKVAIKKEDLHK------------YYGKDTWFPLQPV  105 (121)
T ss_pred             CCceEEEEEEEHHHccC------------CCCcEeeEEEEcc
Confidence            99999999999876431            2235667777654

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.75  E-value=4.9e-17  Score=133.47  Aligned_cols=121  Identities=23%  Similarity=0.341  Sum_probs=95.5

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      ..|+|+|++|++|...+..|.+||||++.+.     .++++|++++++.||+|||.|.|. +...   ...|.|+|||++
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~i~V~d~~   73 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCE-----GESVRSPVQKDTLSPEFDTQAIFY-RKKP---RSPIKIQVWNSN   73 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEEC-----CEEEEeCccCCCCCCcccceEEEE-ecCC---CCEEEEEEEECC
Confidence            4689999999999999988999999999984     467899999999999999999993 4322   578999999999


Q ss_pred             CCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        210 KYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       210 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      ..++++||++.+++.++.....  .+++|....         ..+.....|.|.+.+.+.+
T Consensus        74 ~~~d~~lG~~~~~l~~~~~~~~--~~~~l~~~~---------~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          74 LLCDEFLGQATLSADPNDSQTL--RTLPLRKRG---------RDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             CCCCCceEEEEEecccCCCcCc--eEEEcccCC---------CCCCCCCCCEEEEEEEEcc
Confidence            8777999999999998754443  445554211         1123467899988876644

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>KOG1030|consensus

Probab=99.74  E-value=8.5e-18  Score=138.98  Aligned_cols=98  Identities=33%  Similarity=0.391  Sum_probs=86.2

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      -|.|.|.|++|.||...|..+++||||.+.+++    ++.+|+++++++||+|||.|+|.+.  +. ...|+++|||+|.
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~----q~lkT~~v~~n~NPeWNe~ltf~v~--d~-~~~lkv~VyD~D~   77 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN----QKLKTRVVYKNLNPEWNEELTFTVK--DP-NTPLKVTVYDKDT   77 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEECC----eeeeeeeecCCCCCcccceEEEEec--CC-CceEEEEEEeCCC
Confidence            378999999999999998888999999999954    8899999999999999999999997  33 4789999999999


Q ss_pred             CCCCeeeEEEEEccCCCCCcchhhh
Q psy12136        352 GKSNDYLGCLELCCNSKGDRLRHWV  376 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~~~~~~~~w~  376 (399)
                      ++.||+||.++|++...-.....|+
T Consensus        78 fs~dD~mG~A~I~l~p~~~~~~~~~  102 (168)
T KOG1030|consen   78 FSSDDFMGEATIPLKPLLEAQKMDY  102 (168)
T ss_pred             CCcccccceeeeccHHHHHHhhhhc
Confidence            9999999999999987544444444

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.74  E-value=2e-17  Score=135.34  Aligned_cols=89  Identities=30%  Similarity=0.534  Sum_probs=79.4

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  353 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~  353 (399)
                      +|+|+|++|++|+.++..+.+||||+|++.    ..+++|++++++.||.|||+|.|.+...  ....|.|+|||++..+
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~----~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~~~v~d~~~~~   74 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN----GQTLETSVVKKSCYPRWNEVFEFELMEG--ADSPLSVEVWDWDLVS   74 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEEC----CEEEeceeecCCCCCccCcEEEEEcCCC--CCCEEEEEEEECCCCC
Confidence            589999999999999888899999999984    3678999999999999999999998743  2568999999999988


Q ss_pred             CCeeeEEEEEccCCC
Q psy12136        354 SNDYLGCLELCCNSK  368 (399)
Q Consensus       354 ~d~~lG~~~i~l~~~  368 (399)
                      ++++||++.+++++.
T Consensus        75 ~~~~iG~~~~~l~~l   89 (123)
T cd04025          75 KNDFLGKVVFSIQTL   89 (123)
T ss_pred             CCcEeEEEEEEHHHc
Confidence            899999999998764

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.74  E-value=2.5e-17  Score=136.75  Aligned_cols=114  Identities=27%  Similarity=0.381  Sum_probs=93.0

Q ss_pred             eccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEe
Q psy12136        269 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD  348 (399)
Q Consensus       269 ~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  348 (399)
                      ....|.|.|+|++|++|+..+..|.+||||++.+.    ..+++|++++++.||.|||+|.|.+.  ++....|.|+|||
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~----~~~~kT~vi~~t~nP~Wne~f~f~v~--~~~~~~l~i~V~D   84 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG----SQEHKTKVVSDTLNPKWNSSMQFFVK--DLEQDVLCITVFD   84 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC----CEeeeccccCCCCCCccCceEEEEec--CccCCEEEEEEEE
Confidence            44568999999999999999989999999999984    36799999999999999999999986  4445789999999


Q ss_pred             CCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        349 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       349 ~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      ++.+++|++||++.|++.+......+       .+..+.+|+.|...
T Consensus        85 ~d~~~~d~~lG~~~i~l~~l~~~~~~-------~~~~~~~~~~~~~~  124 (136)
T cd08375          85 RDFFSPDDFLGRTEIRVADILKETKE-------SKGPITKRLLLHEV  124 (136)
T ss_pred             CCCCCCCCeeEEEEEEHHHhcccccc-------CCCcEEEEeccccc
Confidence            99988899999999998764322111       22345677777543

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.74  E-value=5.6e-17  Score=133.22  Aligned_cols=116  Identities=25%  Similarity=0.400  Sum_probs=94.3

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK  210 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~  210 (399)
                      .|.|+|++|++|+..+..+.+||||+|.+...+  ...+||++++++.||+|||+|.| .+...  ....|.|+|||++.
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~~~~~t~~P~Wne~f~f-~i~~~--~~~~L~i~v~d~d~   76 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGK--RRIAKTRTIYDTLNPRWDEEFEL-EVPAG--EPLWISATVWDRSF   76 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCC--eeeecccEecCCCCCcccceEEE-EcCCC--CCCEEEEEEEECCC
Confidence            689999999999999988999999999975321  35689999999999999999999 45543  24789999999999


Q ss_pred             CCC-cceeeEEecCcccCC---CcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        211 YGH-DFLGEARFPLNRLRP---HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       211 ~~~-~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      .++ ++||++.++|.++..   +.....|+.|.                  ..|++++.+.+.
T Consensus        77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------------~~g~i~l~~~~~  121 (126)
T cd04043          77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD------------------TQGRLLLRVSME  121 (126)
T ss_pred             CCCCceEEEEEEecCHHHcCCCCCCceEEEEcC------------------CCCeEEEEEEEe
Confidence            877 999999999988643   33556787774                  257888877664

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.74  E-value=2.8e-17  Score=133.57  Aligned_cols=105  Identities=26%  Similarity=0.362  Sum_probs=86.1

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  354 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~  354 (399)
                      |.|+|++|++|+..+..+.+||||++++.+.. ..+++|++++++.||+|||+|.|.+...  ....|.|+|||++.. +
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~-~~~~kT~vv~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~-~   77 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS-DEKKRTKTIKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV-M   77 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC-CccCccceecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC-C
Confidence            78999999999998888899999999986422 3678999999999999999999998743  345799999999988 8


Q ss_pred             CeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        355 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       355 d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      +++||++.++++...            ++..+..|++|.+.
T Consensus        78 ~~~iG~~~~~l~~l~------------~g~~~~~~~~L~~~  106 (119)
T cd04036          78 DDHLGTVLFDVSKLK------------LGEKVRVTFSLNPQ  106 (119)
T ss_pred             CcccEEEEEEHHHCC------------CCCcEEEEEECCCC
Confidence            999999999997643            23345666666654

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.74  E-value=5.1e-17  Score=133.65  Aligned_cols=118  Identities=19%  Similarity=0.277  Sum_probs=97.5

Q ss_pred             EEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCCC-c
Q psy12136        136 LHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-D  214 (399)
Q Consensus       136 V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~-~  214 (399)
                      |++|++|+.  ..+.+||||+|++.     ..+++|++++++.||+|||.|.| .+.........|.|+|||++..++ +
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~-----~~~~kT~v~~~~~nP~Wne~f~f-~~~~~~~~~~~l~~~v~d~~~~~~d~   73 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFR-----GVKKKTRVLENELNPVWNETFEW-PLAGSPDPDESLEIVVKDYEKVGRNR   73 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEEC-----CEeeecceeCCCcCCcccceEEE-EeCCCcCCCCEEEEEEEECCCCCCCc
Confidence            789999999  57889999999994     46789999999999999999999 454332346889999999999877 9


Q ss_pred             ceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeeccce
Q psy12136        215 FLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKR  273 (399)
Q Consensus       215 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~  273 (399)
                      +||++.++|+++..+.....|++|.+..            .....|+|++.++|.|..+
T Consensus        74 ~iG~~~~~l~~l~~~~~~~~~~~L~~~~------------~~~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          74 LIGSATVSLQDLVSEGLLEVTEPLLDSN------------GRPTGATISLEVSYQPPDG  120 (127)
T ss_pred             eEEEEEEEhhHcccCCceEEEEeCcCCC------------CCcccEEEEEEEEEeCCCC
Confidence            9999999999999887778888885310            1235689999999988643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.74  E-value=5.4e-17  Score=134.89  Aligned_cols=121  Identities=22%  Similarity=0.388  Sum_probs=95.2

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCc----ccCC--CceEEEE
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE----TDLS--LQSLHIL  204 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~----~~l~--~~~L~~~  204 (399)
                      +|+|+|++|++|+..+..+.+||||+|.+.     ..++||++++++.||+|||.|.|..+..    .++.  ...|.|+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~   76 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFL-----NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE   76 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEEC-----CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence            799999999999999999999999999995     4688999999999999999999943322    1111  2578999


Q ss_pred             EEEcCCCCC-cceeeEEe-cCcccCC---CcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        205 VLDDDKYGH-DFLGEARF-PLNRLRP---HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       205 V~d~~~~~~-~~lG~~~i-~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      |||++..++ ++||++.+ ++..+..   ......|++|...              ....|+|++++.+.+
T Consensus        77 V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~--------------~~~~Geil~~~~~~~  133 (135)
T cd04017          77 LFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG--------------GQSAGELLAAFELIE  133 (135)
T ss_pred             EEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC--------------CCchhheeEEeEEEE
Confidence            999999888 99999986 4444432   3456678887531              247899999987764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.73  E-value=3.4e-17  Score=133.53  Aligned_cols=100  Identities=28%  Similarity=0.479  Sum_probs=84.4

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  353 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~  353 (399)
                      +|+|+|++|++|+..+..|.+||||++.+.+   +..++|++++++.||+|||.|.|.+.  .+ ...|.|+|||++..+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~--~~-~~~l~~~v~D~d~~~   74 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG---KTVYKSKTIYKNLNPVWDEKFTLPIE--DV-TQPLYIKVFDYDRGL   74 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC---EEEEEeeeccCCCCCccceeEEEEec--CC-CCeEEEEEEeCCCCC
Confidence            5899999999999999889999999999842   36889999999999999999999986  33 468999999999998


Q ss_pred             CCeeeEEEEEccCCCC--Ccchhhhhhh
Q psy12136        354 SNDYLGCLELCCNSKG--DRLRHWVDMM  379 (399)
Q Consensus       354 ~d~~lG~~~i~l~~~~--~~~~~w~~l~  379 (399)
                      ++++||++.+++.+..  ...+.|++|.
T Consensus        75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~  102 (121)
T cd04042          75 TDDFMGSAFVDLSTLELNKPTEVKLKLE  102 (121)
T ss_pred             CCcceEEEEEEHHHcCCCCCeEEEEECC
Confidence            9999999999998633  3444455544

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.73  E-value=1.9e-17  Score=131.75  Aligned_cols=94  Identities=22%  Similarity=0.362  Sum_probs=79.5

Q ss_pred             CEEEEEEEEecCCCCCCCC----CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEE
Q psy12136        130 CSLHVTLHRAKGLRAMDIH----GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV  205 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V  205 (399)
                      +.|.|+|++|++|++.+..    +.+||||+|++.     .+++||++++++.||+|||.|.| .+...+. ...|.|.|
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~~~kT~v~~~t~nPvWne~f~f-~v~~~~~-~~~L~~~V   73 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RRVFRTSWRRHTLNPVFNERLAF-EVYPHEK-NFDIQFKV   73 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CEeEeeeeecCCCCCcccceEEE-EEeCccC-CCEEEEEE
Confidence            4799999999999987642    358999999983     46789999999999999999999 4544332 46899999


Q ss_pred             EEcCCCCC-cceeeEEecCcccCCCc
Q psy12136        206 LDDDKYGH-DFLGEARFPLNRLRPHI  230 (399)
Q Consensus       206 ~d~~~~~~-~~lG~~~i~l~~l~~~~  230 (399)
                      ||++..++ ++||++.++|++|..+.
T Consensus        74 ~D~d~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          74 LDKDKFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             EECCCCCCCcceEEEEEEHHHHHhhC
Confidence            99999988 99999999999987654

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.73  E-value=2.1e-17  Score=131.47  Aligned_cols=90  Identities=29%  Similarity=0.417  Sum_probs=77.7

Q ss_pred             eeEEEEEEeeecCCCCCCC----CCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEe
Q psy12136        273 RALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD  348 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~----g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  348 (399)
                      |.|.|+|++|++|+..+..    +.+||||++++.    +.++||++++++.||+|||.|.|.+...+. ...|.|.|||
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~----~~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~D   75 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG----RRVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVLD   75 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC----CEeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEEE
Confidence            5789999999999987632    358999999983    367899999999999999999999864432 4689999999


Q ss_pred             CCCCCCCeeeEEEEEccCC
Q psy12136        349 KDYGKSNDYLGCLELCCNS  367 (399)
Q Consensus       349 ~~~~~~d~~lG~~~i~l~~  367 (399)
                      ++.+++|++||++.|+|++
T Consensus        76 ~d~~~~dd~IG~~~l~L~~   94 (108)
T cd04039          76 KDKFSFNDYVATGSLSVQE   94 (108)
T ss_pred             CCCCCCCcceEEEEEEHHH
Confidence            9999999999999999876

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.73  E-value=5.3e-17  Score=134.45  Aligned_cols=114  Identities=24%  Similarity=0.371  Sum_probs=95.5

Q ss_pred             CEEEEEEEEecCCCCCCCC----------CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCc
Q psy12136        130 CSLHVTLHRAKGLRAMDIH----------GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQ  199 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~----------~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~  199 (399)
                      +.|+|+|++|++|...+..          +.+||||+|.+..    ....+|++++++.||.|||+|.| .+..    ..
T Consensus         4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~----~~~~kT~~~~~t~~P~Wne~f~~-~v~~----~~   74 (132)
T cd04014           4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD----THIGKTSTKPKTNSPVWNEEFTT-EVHN----GR   74 (132)
T ss_pred             eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC----EEEeEEeEcCCCCCCCcceeEEE-EcCC----CC
Confidence            5799999999999988763          6799999999952    34578999999999999999999 4652    47


Q ss_pred             eEEEEEEEcCCCCC-cceeeEEecCcccCC--CcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        200 SLHILVLDDDKYGH-DFLGEARFPLNRLRP--HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       200 ~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      .|.|.|||++..+. ++||++.++|.++..  +.....|++|+                  ..|+|++.+.|..
T Consensus        75 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------------~~G~l~l~~~~~~  130 (132)
T cd04014          75 NLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------------PQGKLHVKIELKG  130 (132)
T ss_pred             EEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------------CCcEEEEEEEEec
Confidence            89999999998877 999999999999887  45678888884                  3589999988764

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.73  E-value=7.8e-17  Score=130.98  Aligned_cols=117  Identities=36%  Similarity=0.574  Sum_probs=94.3

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      +.|.|+|++|++|+..+..+.+||||+|++.     ...++|++++++.||.|||+|.|. +..  + ...|.|+|||++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~~~-~~~--~-~~~l~~~v~d~~   71 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV-----NARLQTHTIYKTLNPEWNKIFTFP-IKD--I-HDVLEVTVYDED   71 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC-----CEeeecceecCCcCCccCcEEEEE-ecC--c-CCEEEEEEEECC
Confidence            5789999999999999988899999999995     356899999999999999999994 432  2 368999999999


Q ss_pred             CCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        210 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       210 ~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      ..++ ++||++.+++.++..+.  ..|+.|...           .......|+|.+++.+
T Consensus        72 ~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~-----------~~~~~~~G~i~l~~~~  118 (119)
T cd08377          72 KDKKPEFLGKVAIPLLSIKNGE--RKWYALKDK-----------KLRTRAKGSILLEMDV  118 (119)
T ss_pred             CCCCCceeeEEEEEHHHCCCCC--ceEEECccc-----------CCCCceeeEEEEEEEe
Confidence            8777 99999999999987654  346666431           0112468999988764

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.73  E-value=3.8e-17  Score=135.88  Aligned_cols=106  Identities=30%  Similarity=0.404  Sum_probs=90.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc-------------cCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET-------------DLSL  198 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~-------------~l~~  198 (399)
                      |+|.|++|++|+.. ..+.+||||+|++..+ ....+++|++++++.||.|||+|.|. +...             ++..
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~   77 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEK   77 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEE-ccccccccccccccccccccc
Confidence            67999999999988 7789999999999743 23578999999999999999999994 4432             4456


Q ss_pred             ceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        199 QSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       199 ~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ..|.|+|||++..++ ++||++.++|.++........|+.|.+
T Consensus        78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~  120 (137)
T cd08675          78 SELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQP  120 (137)
T ss_pred             cEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCC
Confidence            789999999999877 999999999999987767778888865

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=4.7e-17  Score=129.20  Aligned_cols=99  Identities=30%  Similarity=0.361  Sum_probs=84.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |.|+|++|++|+..+..+.+||||+|++.     .+++||++++++.||+|||.|.| .+...+  ...|.|+|||++. 
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f-~v~~~~--~~~l~v~v~d~~~-   72 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG-----KTTQKSKVKERTNNPVWEEGFTF-LVRNPE--NQELEIEVKDDKT-   72 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEEC-----CEEEeCccccCCCCCcccceEEE-EeCCCC--CCEEEEEEEECCC-
Confidence            78999999999999888999999999995     47899999999999999999999 455422  4689999999887 


Q ss_pred             CCcceeeEEecCcccCCCc--ceeEEEeecc
Q psy12136        212 GHDFLGEARFPLNRLRPHI--SRDLCLNLCK  240 (399)
Q Consensus       212 ~~~~lG~~~i~l~~l~~~~--~~~~~~~L~~  240 (399)
                       +++||++.++|.++....  ....|++|..
T Consensus        73 -~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          73 -GKSLGSLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             -CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence             689999999999987653  3456777753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.72  E-value=3.3e-17  Score=133.03  Aligned_cols=101  Identities=24%  Similarity=0.351  Sum_probs=84.2

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeeccee-CCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      |.|.|+|++|++|+..+..+.+||||++.+.+    .+++|+++. ++.||+|||.|.|.+...  ....|.|+|||++.
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~----~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~   74 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG----VTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDK   74 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC----CccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCC
Confidence            57999999999999998889999999999953    667888875 479999999999999743  34689999999998


Q ss_pred             CCCCeeeEEEEEccCCC--CCcchhhhhhhc
Q psy12136        352 GKSNDYLGCLELCCNSK--GDRLRHWVDMMK  380 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~~--~~~~~~w~~l~~  380 (399)
                      .+ +++||++.+++.+.  +....+|++|..
T Consensus        75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~  104 (118)
T cd08681          75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTL  104 (118)
T ss_pred             CC-CcceEEEEEecHHHhhcCCCCCcEEecc
Confidence            76 89999999999863  345567776654

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.72  E-value=7.4e-17  Score=134.10  Aligned_cols=109  Identities=29%  Similarity=0.452  Sum_probs=89.8

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccC-------------cccccE
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-------------ELSKQT  341 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-------------~l~~~~  341 (399)
                      |.|.|++|++|+.+ ..+.+||||+|++.......+++|+++.++.||.|||+|.|.+...             ++....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57899999999988 7889999999999754224789999999999999999999998643             335678


Q ss_pred             EEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCC
Q psy12136        342 LVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  396 (399)
Q Consensus       342 l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~  396 (399)
                      |.|+|||++..+++++||++.|++....            .......|++|++..
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~------------~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQ------------QAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhcc------------CCCcccceEecCCcC
Confidence            9999999998888999999999987633            122457777777765

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.72  E-value=9.5e-17  Score=131.30  Aligned_cols=107  Identities=28%  Similarity=0.381  Sum_probs=90.9

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  354 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~  354 (399)
                      |+|.|++|++|+.++..+.+||||++++.+.  ....+|.+++++.||+|||+|.|.+...  ....|.|+|||++.+++
T Consensus         2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~~kT~~v~~t~nP~Wne~f~f~~~~~--~~~~L~~~V~d~d~~~~   77 (124)
T cd04037           2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK--KINDRDNYIPNTLNPVFGKMFELEATLP--GNSILKISVMDYDLLGS   77 (124)
T ss_pred             EEEEEEECcCCCCCCCCCCCCcEEEEEECCe--eccceeeEEECCCCCccceEEEEEecCC--CCCEEEEEEEECCCCCC
Confidence            7899999999999999999999999999542  2456788889999999999999987532  35689999999999989


Q ss_pred             CeeeEEEEEccCCCCCcchhhhhhhcCCCCce
Q psy12136        355 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH  386 (399)
Q Consensus       355 d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~  386 (399)
                      +++||++.|+++...- ..||+.+...|....
T Consensus        78 dd~iG~~~i~l~~~~~-~~~~~~~~~~~~~~~  108 (124)
T cd04037          78 DDLIGETVIDLEDRFF-SKHRATCGLPPTYEE  108 (124)
T ss_pred             CceeEEEEEeeccccc-chHHHhccCCCcccc
Confidence            9999999999987543 688999888886553

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.72  E-value=8.5e-17  Score=133.70  Aligned_cols=112  Identities=19%  Similarity=0.232  Sum_probs=87.8

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEecc-----Cccc--ccEEEEE
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-----TELS--KQTLVIT  345 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-----~~l~--~~~l~i~  345 (399)
                      ++|+|+|++|++|+.++..|.+||||+|.+.+    .+++|++++++.||.|||.|.|.+..     .++.  ...|.|+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~   76 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLN----QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE   76 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECC----eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence            47899999999999999999999999999953    67899999999999999999998531     1111  2479999


Q ss_pred             EEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCC
Q psy12136        346 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  396 (399)
Q Consensus       346 V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~  396 (399)
                      |||++..++|++||++.+........  .|      ++....+||+|....
T Consensus        77 V~d~d~~~~d~~iG~~~i~~~~~~~~--~~------~~~~~~~W~~L~~~~  119 (135)
T cd04017          77 LFDQDSVGKDEFLGRSVAKPLVKLDL--EE------DFPPKLQWFPIYKGG  119 (135)
T ss_pred             EEeCcCCCCCccceEEEeeeeeeccc--CC------CCCCCceEEEeecCC
Confidence            99999988999999999853221111  01      556778999987543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.72  E-value=8.4e-17  Score=131.76  Aligned_cols=120  Identities=29%  Similarity=0.390  Sum_probs=95.1

Q ss_pred             CEEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        130 CSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      +.|.|+|++|++|+..+ ..+.+||||+|.+...   ...++|++++++.||.|||.|.| .+..   ....|.|+|||+
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~-~v~~---~~~~l~~~v~d~   74 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYI-LVNS---LTEPLNLTVYDF   74 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEE-EeCC---CCCEEEEEEEec
Confidence            46999999999999755 3467899999999632   36789999999999999999999 4652   257899999999


Q ss_pred             CCCCC-cceeeEEecCcccCCCccee-EEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        209 DKYGH-DFLGEARFPLNRLRPHISRD-LCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      +..++ ++||++.++|.++....... .+..+.      .        .....|+|+++++|.|
T Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~------~--------~~k~~G~i~~~l~~~p  124 (124)
T cd04044          75 NDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLL------R--------NGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCCCCCceeEEEEEEHHHhccCccccCcchhhh------c--------CCccceEEEEEEEeCC
Confidence            98877 99999999999998765442 222221      1        1246799999999976

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.72  E-value=1.3e-16  Score=130.30  Aligned_cols=117  Identities=26%  Similarity=0.406  Sum_probs=92.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |+|+|++|++|+..+..+.+||||+|++.+    .+.+||++++++.||+|||.|.| .+..    ...|.|+|||++..
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~-~~~~----~~~l~i~V~d~~~~   72 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG----GQTHSTDVAKKTLDPKWNEHFDL-TVGP----SSIITIQVFDQKKF   72 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECC----ccceEccEEcCCCCCcccceEEE-EeCC----CCEEEEEEEECCCC
Confidence            799999999999999889999999999952    46789999999999999999999 4543    47899999999987


Q ss_pred             CC---cceeeEEecCcccCCCc-ceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136        212 GH---DFLGEARFPLNRLRPHI-SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL  266 (399)
Q Consensus       212 ~~---~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l  266 (399)
                      ++   ++||++.+++.++.... ....|++|++...         .......|+|.+.+
T Consensus        73 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~---------~~~~~~~G~v~~~~  122 (123)
T cd08382          73 KKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK---------SDNLSVRGKIVVSL  122 (123)
T ss_pred             CCCCCceEeEEEEEHHHccccCCCccceeEeecCCC---------CCCceEeeEEEEEe
Confidence            53   69999999999987544 3356777754211         01124578887764

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.71  E-value=6.7e-17  Score=131.51  Aligned_cols=84  Identities=31%  Similarity=0.438  Sum_probs=74.4

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  353 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~  353 (399)
                      +|.|+|++|+||+.+    .+||||++.+..    .+.+|++++++.||+|||+|.|.+.  .+....|.|+|||++.. 
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~----~~~kT~v~~~t~nP~Wne~F~f~~~--~~~~~~L~~~v~d~d~~-   69 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGN----YKGSTKAIERTSNPEWNQVFAFSKD--RLQGSTLEVSVWDKDKA-   69 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECC----ccccccccCCCCCCccceEEEEEcC--CCcCCEEEEEEEeCCCC-
Confidence            489999999999876    689999999953    6789999999999999999999975  44567899999999977 


Q ss_pred             CCeeeEEEEEccCCC
Q psy12136        354 SNDYLGCLELCCNSK  368 (399)
Q Consensus       354 ~d~~lG~~~i~l~~~  368 (399)
                      ++++||++.|++++.
T Consensus        70 ~~~~lG~~~i~l~~l   84 (121)
T cd08378          70 KDDFLGGVCFDLSEV   84 (121)
T ss_pred             cCceeeeEEEEhHhC
Confidence            789999999999874

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.3e-16  Score=131.22  Aligned_cols=114  Identities=31%  Similarity=0.472  Sum_probs=91.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK  210 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~  210 (399)
                      +|+|+|++|++|+..+..+.+||||+|++.     ...++|++++++.||+|||.|.|. +...   ...|.|+|||++.
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~   72 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG-----KTKKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDD   72 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC-----CEeeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCC
Confidence            699999999999999988999999999984     357899999999999999999993 4322   3579999999985


Q ss_pred             C-----------CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136        211 Y-----------GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL  266 (399)
Q Consensus       211 ~-----------~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l  266 (399)
                      .           +. ++||++.+++.++..  ....|+.|.+.           .......|+|.+++
T Consensus        73 ~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~-----------~~~~~~~G~i~~~~  127 (127)
T cd04027          73 DIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKR-----------TDKSAVSGAIRLHI  127 (127)
T ss_pred             CcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccC-----------CCCCcEeEEEEEEC
Confidence            2           34 999999999998753  34578788652           12235689888763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.71  E-value=4.4e-17  Score=137.03  Aligned_cols=104  Identities=34%  Similarity=0.592  Sum_probs=85.2

Q ss_pred             eeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-------------------------ceEeecceeCCCC
Q psy12136        267 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-------------------------RKYKTGVKWKTLN  321 (399)
Q Consensus       267 ~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-------------------------~~~kT~v~~~t~n  321 (399)
                      ...|..+.|.|+|++|+||..++..|.+||||+|.+.+...+                         ..++|++++++.|
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            355678999999999999999999999999999998643211                         2478999999999


Q ss_pred             ceecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC-Ccchhhh
Q psy12136        322 PIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWV  376 (399)
Q Consensus       322 P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~-~~~~~w~  376 (399)
                      |.|||+|.|.+.  .+....|.|+|||++    +++||++.|++++.. .+.++||
T Consensus       102 P~WnE~F~f~v~--~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~  151 (153)
T cd08676         102 PVWNETFRFEVE--DVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWF  151 (153)
T ss_pred             CccccEEEEEec--cCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeE
Confidence            999999999986  344678999999997    789999999987633 3344444

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.71  E-value=7.1e-17  Score=129.50  Aligned_cols=103  Identities=19%  Similarity=0.222  Sum_probs=84.5

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEece-eCcccCCCceEEEEEE
Q psy12136        128 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS-VSETDLSLQSLHILVL  206 (399)
Q Consensus       128 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~-v~~~~l~~~~L~~~V~  206 (399)
                      +...|+|+|++|++|.    .+.+||||+|++.     .++++|++++++.||+|||+|.|.. .+..++....|.|+||
T Consensus         2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~   72 (111)
T cd04011           2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVG-----GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY   72 (111)
T ss_pred             CcEEEEEEEEEcccCC----CCCCCCEEEEEEC-----CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence            3458999999999998    5679999999996     3678999999999999999999942 2234455678999999


Q ss_pred             EcCCCCC-cceeeEEecCcccCCCcce---eEEEeec
Q psy12136        207 DDDKYGH-DFLGEARFPLNRLRPHISR---DLCLNLC  239 (399)
Q Consensus       207 d~~~~~~-~~lG~~~i~l~~l~~~~~~---~~~~~L~  239 (399)
                      |++..++ ++||++.++|+++..+..+   ..|++|.
T Consensus        73 d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~  109 (111)
T cd04011          73 DSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT  109 (111)
T ss_pred             cCcccccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence            9999887 9999999999999766443   4566664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.71  E-value=1.3e-16  Score=130.97  Aligned_cols=86  Identities=26%  Similarity=0.447  Sum_probs=75.7

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  354 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~  354 (399)
                      |.|+|++|+||+.  ..|.+||||++++...  ..+++|++++++.||+|||.|.|.+...   ...|.|+|||++..++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~~   73 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP--PQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKSD   73 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCC--CcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCCC
Confidence            6799999999987  6789999999998521  2678999999999999999999998532   4689999999999888


Q ss_pred             CeeeEEEEEccCC
Q psy12136        355 NDYLGCLELCCNS  367 (399)
Q Consensus       355 d~~lG~~~i~l~~  367 (399)
                      +++||++.+++++
T Consensus        74 ~~~lG~~~i~l~~   86 (126)
T cd08678          74 SKFLGLAIVPFDE   86 (126)
T ss_pred             CceEEEEEEeHHH
Confidence            9999999999986

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.71  E-value=1.3e-16  Score=130.03  Aligned_cols=87  Identities=28%  Similarity=0.442  Sum_probs=77.0

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  354 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~  354 (399)
                      |.|.|++|++|+.++..|.+||||++.+.+   ....+|++++++.||.|||.|.|.+...   ...|.|.|||++..++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~---~~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~~~   75 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN---EVIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTLSR   75 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECC---EeeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCCCC
Confidence            789999999999999999999999999842   2457999999999999999999998632   3689999999999999


Q ss_pred             CeeeEEEEEccCC
Q psy12136        355 NDYLGCLELCCNS  367 (399)
Q Consensus       355 d~~lG~~~i~l~~  367 (399)
                      +++||++.++++.
T Consensus        76 d~~iG~~~~~~~~   88 (121)
T cd04054          76 DDVIGKVSLTREV   88 (121)
T ss_pred             CCEEEEEEEcHHH
Confidence            9999999999754

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.71  E-value=1.3e-16  Score=132.35  Aligned_cols=92  Identities=30%  Similarity=0.414  Sum_probs=79.7

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCC--CC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~--~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      .|.|+|++|++|+..+..+.+||||+|++.+..  .. .+++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~   77 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDEN   77 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECC
Confidence            378999999999999888899999999997541  11 467999999999999999999998642   367999999999


Q ss_pred             CCCCCeeeEEEEEccCCC
Q psy12136        351 YGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~~  368 (399)
                      .++++++||++.+++++.
T Consensus        78 ~~~~~~~iG~~~i~l~~l   95 (133)
T cd04033          78 RLTRDDFLGQVEVPLNNL   95 (133)
T ss_pred             CCCCCCeeEEEEEEHHHC
Confidence            998999999999998863

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=1.1e-16  Score=128.82  Aligned_cols=102  Identities=18%  Similarity=0.185  Sum_probs=79.6

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      +++|.|.|++|++|+..+   ..||||++.++    ..+.+|++.++ .||.|||.|.|.+.  +. +..|.|+|||++.
T Consensus         1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g----~~k~kT~v~~~-~nP~WnE~F~F~~~--~~-~~~L~v~V~dkd~   69 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQ----NVKSTTIAVRG-SQPCWEQDFMFEIN--RL-DLGLVIELWNKGL   69 (127)
T ss_pred             CceEEEEEEEeeCCCCCC---CCCCeEEEEEC----CEEeEeeECCC-CCCceeeEEEEEEc--CC-CCEEEEEEEeCCC
Confidence            468999999999996533   46899999994    37789999887 59999999999996  33 3459999999997


Q ss_pred             CCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      + .|++||++.|+|++...+          ......+|++|+++
T Consensus        70 ~-~DD~lG~v~i~L~~v~~~----------~~~~~~~Wy~L~~~  102 (127)
T cd08394          70 I-WDTLVGTVWIPLSTIRQS----------NEEGPGEWLTLDSE  102 (127)
T ss_pred             c-CCCceEEEEEEhHHcccC----------CCCCCCccEecChH
Confidence            6 899999999999874322          11123577777754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.70  E-value=1.1e-16  Score=134.37  Aligned_cols=106  Identities=20%  Similarity=0.290  Sum_probs=85.3

Q ss_pred             EEEEEEeeec--CCCCCCCCCCCcEEEEEEe-cCCCCceEeecceeCCCCceecceEEEEeccC------cccccEEEEE
Q psy12136        275 LIVNLIKCTN--LIPMDSNGFSDPFIKLYLK-PDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT------ELSKQTLVIT  345 (399)
Q Consensus       275 L~v~v~~a~~--L~~~~~~g~~dpyV~v~l~-~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~------~l~~~~l~i~  345 (399)
                      ..++|..|++  |+..+.++.+||||++++. +..+..+.||+++++|.||+|||+|.|.|...      .+....|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            4556666666  7777778889999999984 33333899999999999999999999999654      2446789999


Q ss_pred             EEeCCCC-CCCeeeEEEEEccCCC--CCcchhhhhhhc
Q psy12136        346 VWDKDYG-KSNDYLGCLELCCNSK--GDRLRHWVDMMK  380 (399)
Q Consensus       346 V~d~~~~-~~d~~lG~~~i~l~~~--~~~~~~w~~l~~  380 (399)
                      |||++.+ ++|++||++.|+|...  .....+|++|+.
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~  121 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD  121 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh
Confidence            9999875 5799999999999975  456677888773

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.70  E-value=1.8e-16  Score=130.52  Aligned_cols=89  Identities=29%  Similarity=0.442  Sum_probs=79.6

Q ss_pred             eeEEEEEEeeecCCCCCC--CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136        273 RALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~--~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      |.|.|.|++|+||+..+.  .+.+||||++.+.    ..+++|++++++.||.|||.|.|.+..  .....|.|+|||++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~----~~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~   74 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG----AQRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKD   74 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC----CEEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECC
Confidence            578999999999999888  8899999999984    367899999999999999999999973  34579999999999


Q ss_pred             CCCCCeeeEEEEEccCC
Q psy12136        351 YGKSNDYLGCLELCCNS  367 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~  367 (399)
                      ..+.+++||++.|++.+
T Consensus        75 ~~~~~~~lG~~~i~l~~   91 (128)
T cd04024          75 RFAGKDYLGEFDIALEE   91 (128)
T ss_pred             CCCCCCcceEEEEEHHH
Confidence            88889999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.69  E-value=1.6e-16  Score=129.16  Aligned_cols=100  Identities=32%  Similarity=0.498  Sum_probs=85.2

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      |+|.|+|++|++|+..+..+.+||||++++..    ..++|++++++.||.|||+|.|.+.  ++ ...|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~----~~~~T~~~~~t~nP~W~e~f~~~~~--~~-~~~l~~~v~d~~~~   73 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN----ARLQTHTIYKTLNPEWNKIFTFPIK--DI-HDVLEVTVYDEDKD   73 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC----EeeecceecCCcCCccCcEEEEEec--Cc-CCEEEEEEEECCCC
Confidence            57899999999999998888999999999853    5679999999999999999999985  32 47899999999988


Q ss_pred             CCCeeeEEEEEccCCCCCcchhhhhhh
Q psy12136        353 KSNDYLGCLELCCNSKGDRLRHWVDMM  379 (399)
Q Consensus       353 ~~d~~lG~~~i~l~~~~~~~~~w~~l~  379 (399)
                      +++++||++.+++.....+..+|+.|.
T Consensus        74 ~~~~~iG~~~~~l~~~~~~~~~~~~l~  100 (119)
T cd08377          74 KKPEFLGKVAIPLLSIKNGERKWYALK  100 (119)
T ss_pred             CCCceeeEEEEEHHHCCCCCceEEECc
Confidence            889999999999877554455565554

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.69  E-value=1.1e-15  Score=157.81  Aligned_cols=223  Identities=23%  Similarity=0.354  Sum_probs=164.7

Q ss_pred             CEEEEEEEEecCCCCCC--CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEE
Q psy12136        130 CSLHVTLHRAKGLRAMD--IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD  207 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~--~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d  207 (399)
                      +.|.|+|.+|++|...+  .++..|||+.+....    ....||++++++.||+|||+|...   .+.+ ...|.++|||
T Consensus       436 GVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~----r~~gkT~v~~nt~nPvwNEt~Yi~---lns~-~d~L~LslyD  507 (1227)
T COG5038         436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD----RVIGKTRVKKNTLNPVWNETFYIL---LNSF-TDPLNLSLYD  507 (1227)
T ss_pred             EEEEEEEeeccCcccccccccCCCCceEEEEecc----ccCCccceeeccCCccccceEEEE---eccc-CCceeEEEEe
Confidence            68999999999999988  578999999999752    334599999999999999999762   3333 4789999999


Q ss_pred             cCCCCC-cceeeEEecCcccCCCcceeE---------------EEeecccCCCC-Cccccc------cc-----------
Q psy12136        208 DDKYGH-DFLGEARFPLNRLRPHISRDL---------------CLNLCKHYPVP-REEEVW------GE-----------  253 (399)
Q Consensus       208 ~~~~~~-~~lG~~~i~l~~l~~~~~~~~---------------~~~L~~~~~~~-~~~~~~------~~-----------  253 (399)
                      .+.... .++|.+.++|+.|.....+..               .++++ +++.- +.....      ++           
T Consensus       508 ~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~-ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~  586 (1227)
T COG5038         508 FNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLR-FFPVIEDKKELKGSVEPLEDSNTGILKVTLR  586 (1227)
T ss_pred             ccccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeee-eecccCCccccccccCCcccCCcceeEEEee
Confidence            877766 999999999998875432211               11111 11100 000000      00           


Q ss_pred             --------------------------------------------------------------------------------
Q psy12136        254 --------------------------------------------------------------------------------  253 (399)
Q Consensus       254 --------------------------------------------------------------------------------  253 (399)
                                                                                                      
T Consensus       587 ~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li  666 (1227)
T COG5038         587 EVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLI  666 (1227)
T ss_pred             ccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhh
Confidence                                                                                            


Q ss_pred             ----------cccccceeEEEEEeeec---------------cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC
Q psy12136        254 ----------EECWQHGKIFLTLCFST---------------KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK  308 (399)
Q Consensus       254 ----------~~~~~~G~l~l~l~~~~---------------~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~  308 (399)
                                ......|+|.++.++.|               ..+.++|.|..|.+|......+.+|||.+|.+.+   .
T Consensus       667 ~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~---~  743 (1227)
T COG5038         667 DRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNN---L  743 (1227)
T ss_pred             hccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEecc---e
Confidence                      00122455555544333               2588999999999999888899999999999852   3


Q ss_pred             ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136        309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS  367 (399)
Q Consensus       309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~  367 (399)
                      .+++|-....+.||.||+...-.+...   ...|.+.++|....+.|..||++.|.+..
T Consensus       744 ~k~rti~~~~~~npiw~~i~Yv~v~sk---~~r~~l~~~~~~~sgddr~lg~~~i~vsn  799 (1227)
T COG5038         744 VKYRTIYGSSTLNPIWNEILYVPVTSK---NQRLTLECMDYEESGDDRNLGEVNINVSN  799 (1227)
T ss_pred             eEEEEecccCccccceeeeEEEEecCC---ccEEeeeeecchhccccceeceeeeeeee
Confidence            899999999999999999887777532   35688999999988999999999999775

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.69  E-value=6.3e-16  Score=127.89  Aligned_cols=119  Identities=24%  Similarity=0.368  Sum_probs=92.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC--------CceEecccccCCCCCee-cceEEeceeCcccCCCceE
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT--------SHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSL  201 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--------~~~~rT~~~~~t~nP~w-ne~f~f~~v~~~~l~~~~L  201 (399)
                      .+.|.+++|+||. ++..|.+||||++++.+++..        .+++||+++++++||+| ||.|.| .+..    ...|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f-~v~~----~~~L   75 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVF-VGLP----TDVL   75 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEE-EcCC----CCEE
Confidence            4689999999998 677899999999999875543        35899999999999999 999999 4543    3579


Q ss_pred             EEEEEEcCCCC----CcceeeEEecCcccCCCc---ceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136        202 HILVLDDDKYG----HDFLGEARFPLNRLRPHI---SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL  266 (399)
Q Consensus       202 ~~~V~d~~~~~----~~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l  266 (399)
                      .|+|||++..+    +++||++.+++.++....   ....|++|++..           ......|+|.+.+
T Consensus        76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----------~~s~v~G~~~l~~  136 (137)
T cd08691          76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----------PTDHVSGQLTFRF  136 (137)
T ss_pred             EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----------CCCcEEEEEEEEe
Confidence            99999986542    489999999999987553   244566665421           1235678887764

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.69  E-value=1.6e-16  Score=133.73  Aligned_cols=107  Identities=36%  Similarity=0.576  Sum_probs=86.6

Q ss_pred             EeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC------------------------CceEecccccCCCCC
Q psy12136        125 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT------------------------SHRLRTKTCLRTINP  180 (399)
Q Consensus       125 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~------------------------~~~~rT~~~~~t~nP  180 (399)
                      +.+....|.|+|++|++|.+.+..|.+||||+|.+.+....                        ...++|++++++.||
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP  102 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP  102 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence            34456789999999999999999999999999999753211                        135899999999999


Q ss_pred             eecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccCCCcceeEEEee
Q psy12136        181 EFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL  238 (399)
Q Consensus       181 ~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L  238 (399)
                      +|||+|.|. +.  .+....|.|+|||++   +++||++.+++.++.. .....|+.|
T Consensus       103 ~WnE~F~f~-v~--~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         103 VWNETFRFE-VE--DVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             ccccEEEEE-ec--cCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999993 43  234578999999998   6899999999999983 345666654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.69  E-value=3.3e-16  Score=130.97  Aligned_cols=111  Identities=27%  Similarity=0.284  Sum_probs=89.9

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      |.|.|+|++|+||+..+. +.+||||+++++    ..+++|++++++.||+|||+|.|.+...   ...|.|+|||++.+
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g----~~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~~   73 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG----NQKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDTF   73 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEEC----CEEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCCC
Confidence            679999999999998887 789999999994    3789999999999999999999999632   57899999999999


Q ss_pred             CCCeeeEEEEEccCCCC-CcchhhhhhhcCCCCceeeEEeC
Q psy12136        353 KSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNL  392 (399)
Q Consensus       353 ~~d~~lG~~~i~l~~~~-~~~~~w~~l~~~p~~~~~~Wh~L  392 (399)
                      ++|++||++.+++...- ....+|..-+ ..+..+.+|.+-
T Consensus        74 ~~dd~iG~a~i~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~  113 (145)
T cd04038          74 SKDDSMGEAEIDLEPLVEAAKLDHLRDT-PGGTQIKKVLPS  113 (145)
T ss_pred             CCCCEEEEEEEEHHHhhhhhhhhccccC-CCCEEEEEEecC
Confidence            99999999999988643 2222333222 235567788764

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.68  E-value=2.1e-16  Score=134.53  Aligned_cols=104  Identities=25%  Similarity=0.343  Sum_probs=84.6

Q ss_pred             eeEEEEEEeeecCCCCC------------------------------CCCCCCcEEEEEEecCCCCceEeecceeCCCCc
Q psy12136        273 RALIVNLIKCTNLIPMD------------------------------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNP  322 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~------------------------------~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP  322 (399)
                      |.|.|+|++|++|+.+|                              ..|.+||||+|.+.+   .+..+|++++++.||
T Consensus         7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~---~~~~rT~v~~~~~nP   83 (158)
T cd04015           7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG---ARVARTRVIENSENP   83 (158)
T ss_pred             eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC---eEeeEEEEeCCCCCC
Confidence            78999999999999887                              356789999999952   255799999999999


Q ss_pred             eecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCC--CCCcchhhhhhhcCCC
Q psy12136        323 IFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPD  383 (399)
Q Consensus       323 ~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~--~~~~~~~w~~l~~~p~  383 (399)
                      +|||+|.|.+..  . ...|.|.|||++..+ +++||++.|+++.  .+...++|++|....+
T Consensus        84 ~WnE~F~~~~~~--~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~  142 (158)
T cd04015          84 VWNESFHIYCAH--Y-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNG  142 (158)
T ss_pred             ccceEEEEEccC--C-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCC
Confidence            999999998852  2 357999999999875 6899999999886  3445666777665433

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.68  E-value=6.8e-16  Score=125.02  Aligned_cols=115  Identities=24%  Similarity=0.392  Sum_probs=88.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |.|+|++|++|+..   +.+||||+|++..    ...++|+++++ .||+|||+|.| .+...++....|.|.+||.+..
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~----~~~~kT~~~~~-~~P~Wne~f~f-~v~~~~~~~~~l~i~v~d~~~~   72 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ----VEVARTKTVEK-LNPFWGEEFVF-DDPPPDVTFFTLSFYNKDKRSK   72 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECC----EEeEecceEEC-CCCcccceEEE-ecCCccccEEEEEEEEEecccC
Confidence            78999999999986   7899999999952    34579999988 99999999999 5776666567888999998876


Q ss_pred             CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        212 GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       212 ~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      .+ .++|.+.+  ..+..+.....|++|.+...           .....|+|++.+.|
T Consensus        73 ~~~~~~g~v~l--~~~~~~~~~~~w~~L~~~~~-----------~~~~~G~l~l~~~~  117 (117)
T cd08383          73 DRDIVIGKVAL--SKLDLGQGKDEWFPLTPVDP-----------DSEVQGSVRLRARY  117 (117)
T ss_pred             CCeeEEEEEEe--cCcCCCCcceeEEECccCCC-----------CCCcCceEEEEEEC
Confidence            55 66776555  44554666678888864211           13568999998876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.68  E-value=3.7e-16  Score=125.70  Aligned_cols=97  Identities=20%  Similarity=0.231  Sum_probs=78.2

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      +.|.|+|++||+|+..+   ..||||+|.+.     .++.+|++.++ .||+|||.|.| .+..  . ...|.|+|||++
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g-----~~k~kT~v~~~-~nP~WnE~F~F-~~~~--~-~~~L~v~V~dkd   68 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ-----NVKSTTIAVRG-SQPCWEQDFMF-EINR--L-DLGLVIELWNKG   68 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEEC-----CEEeEeeECCC-CCCceeeEEEE-EEcC--C-CCEEEEEEEeCC
Confidence            47999999999997644   46999999994     47889999877 59999999999 3532  3 345999999999


Q ss_pred             CCCCcceeeEEecCcccCCCcce--eEEEeec
Q psy12136        210 KYGHDFLGEARFPLNRLRPHISR--DLCLNLC  239 (399)
Q Consensus       210 ~~~~~~lG~~~i~l~~l~~~~~~--~~~~~L~  239 (399)
                      ..++++||++.|+|.++..+...  ..|++|+
T Consensus        69 ~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~  100 (127)
T cd08394          69 LIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD  100 (127)
T ss_pred             CcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence            87669999999999998866443  5566665

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.68  E-value=2.5e-16  Score=132.30  Aligned_cols=93  Identities=23%  Similarity=0.377  Sum_probs=78.2

Q ss_pred             EEEEEEEEecCCCCCCCCC--------------CCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136        131 SLHVTLHRAKGLRAMDIHG--------------TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL  196 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~--------------~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l  196 (399)
                      +|.|+|++|++|+.++..+              .+||||+|.+.     .++.||++++++.||+|||+|.|. +.....
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-----g~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~   74 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-----GQKVKTSVKKNSYNPEWNEQIVFP-EMFPPL   74 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-----CEeeecceEcCCCCCCcceEEEEE-eeCCCc
Confidence            4789999999999988543              68999999995     357799999999999999999994 432222


Q ss_pred             CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCc
Q psy12136        197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI  230 (399)
Q Consensus       197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~  230 (399)
                       ...|.|+|||++..++ ++||++.++|.++....
T Consensus        75 -~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~  108 (151)
T cd04018          75 -CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG  108 (151)
T ss_pred             -CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence             3689999999999877 99999999999987643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.68  E-value=2.8e-16  Score=129.17  Aligned_cols=102  Identities=26%  Similarity=0.519  Sum_probs=84.0

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      .+|.|+|++|++|+..+..+.+||||+|++.    ..+++|+++.++.||.|||+|.|.+...   ...|.|+|||++..
T Consensus         1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~   73 (127)
T cd04027           1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVG----KTKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDDD   73 (127)
T ss_pred             CeEEEEEEECcCCcCCCCCCCcCcEEEEEEC----CEeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCCC
Confidence            3689999999999999988999999999984    2678999999999999999999988522   35899999999852


Q ss_pred             -----------CCCeeeEEEEEccCCCCCcchhhhhhhcC
Q psy12136        353 -----------KSNDYLGCLELCCNSKGDRLRHWVDMMKY  381 (399)
Q Consensus       353 -----------~~d~~lG~~~i~l~~~~~~~~~w~~l~~~  381 (399)
                                 +.+++||++.+++.+......+|+.|...
T Consensus        74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~  113 (127)
T cd04027          74 IKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKR  113 (127)
T ss_pred             cccccceeccccCCCcceEEEEEhHHccCCCCeEEECccC
Confidence                       46899999999988765555556555533

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.68  E-value=3.9e-16  Score=127.29  Aligned_cols=93  Identities=25%  Similarity=0.411  Sum_probs=79.3

Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      ..++|.|+|++|++|+. +..+.+||||+|++.+    .+++|++++++.||+|||+|.|..... .....|.|+|||++
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~----~~~kT~vi~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d   99 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG----QEKRTEVIWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRD   99 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC----ccccCceecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCC
Confidence            45889999999999974 6678899999999853    589999999999999999999974321 13578999999999


Q ss_pred             CCCCCeeeEEEEEccCCCC
Q psy12136        351 YGKSNDYLGCLELCCNSKG  369 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~~~  369 (399)
                      ..+++++||++.+++.+..
T Consensus       100 ~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032         100 NGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCCCeeEEEEEEecCCc
Confidence            9989999999999998643

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.67  E-value=2.9e-16  Score=127.98  Aligned_cols=89  Identities=28%  Similarity=0.488  Sum_probs=77.3

Q ss_pred             eeEEEEEEeeecCCCCCC------CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEE
Q psy12136        273 RALIVNLIKCTNLIPMDS------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV  346 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~------~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V  346 (399)
                      |.|.|.|++|+||+..+.      .+.+||||++++.+    ..++|++++++.||.|||.|.|.+..  .....|.|+|
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~----~~~kT~~~~~t~~P~W~e~f~~~v~~--~~~~~l~i~v   74 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA----QTFKSKVIKENLNPKWNEVYEAVVDE--VPGQELEIEL   74 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC----EeEEccccCCCCCCcccceEEEEeCC--CCCCEEEEEE
Confidence            468999999999998764      36899999999953    78999999999999999999999863  3457899999


Q ss_pred             EeCCCCCCCeeeEEEEEccCCC
Q psy12136        347 WDKDYGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       347 ~d~~~~~~d~~lG~~~i~l~~~  368 (399)
                      ||++.. ++++||++.+++.+.
T Consensus        75 ~d~~~~-~~~~iG~~~i~l~~l   95 (121)
T cd08391          75 FDEDPD-KDDFLGRLSIDLGSV   95 (121)
T ss_pred             EecCCC-CCCcEEEEEEEHHHh
Confidence            999987 889999999998763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.67  E-value=7.7e-16  Score=126.29  Aligned_cols=98  Identities=16%  Similarity=0.332  Sum_probs=76.7

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      ..|.|+|++|+||+..   +.+||||+|.+.+   .+..+|+++ ++.||.|||.|.|.+...++  ..|.|.|||++..
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~---~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~--~~l~v~v~d~~~~   74 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE---VKVARTKVR-EGPNPVWSEEFVFDDLPPDV--NSFTISLSNKAKR   74 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECC---EeEEEeecC-CCCCCccCCEEEEecCCCCc--CEEEEEEEECCCC
Confidence            4699999999999864   4789999999942   255788874 58999999999998754332  4789999999999


Q ss_pred             CCCeeeEEEEEccCCCC--Ccchhhhhhh
Q psy12136        353 KSNDYLGCLELCCNSKG--DRLRHWVDMM  379 (399)
Q Consensus       353 ~~d~~lG~~~i~l~~~~--~~~~~w~~l~  379 (399)
                      +++++||++.|++....  ...++|+.|.
T Consensus        75 ~~d~~iG~v~i~l~~l~~~~~~~~W~~L~  103 (126)
T cd08400          75 SKDSEIAEVTVQLSKLQNGQETDEWYPLS  103 (126)
T ss_pred             CCCCeEEEEEEEHhHccCCCcccEeEEcc
Confidence            99999999999988633  3334444443

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.67  E-value=1.3e-15  Score=125.15  Aligned_cols=91  Identities=30%  Similarity=0.500  Sum_probs=79.5

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  353 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~  353 (399)
                      .|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+...  ....|.|+|||++..+
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~-~~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~~   78 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG-KRRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFVG   78 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCC-CeeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCCC
Confidence            68999999999999988999999999987532 13678999999999999999999998743  3468999999999888


Q ss_pred             CCeeeEEEEEccCC
Q psy12136        354 SNDYLGCLELCCNS  367 (399)
Q Consensus       354 ~d~~lG~~~i~l~~  367 (399)
                      ++++||++.+++..
T Consensus        79 ~~~~iG~~~i~l~~   92 (126)
T cd04043          79 KHDLCGRASLKLDP   92 (126)
T ss_pred             CCceEEEEEEecCH
Confidence            89999999999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.67  E-value=6.2e-16  Score=125.64  Aligned_cols=112  Identities=17%  Similarity=0.237  Sum_probs=91.2

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      |.|.|+|++|++|+..+..+.+||||+|.+.+   ..+++|+++.++.||.|||.|.|.+...   ...|.|+|||++..
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~---~~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~~   74 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG---IVKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEKV   74 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECC---EEeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCCC
Confidence            46889999999999988889999999999842   2678999999999999999999988633   36899999999999


Q ss_pred             CCCeeeEEEEEccCCC-CCcchhhhhhhcCCCCceeeEE
Q psy12136        353 KSNDYLGCLELCCNSK-GDRLRHWVDMMKYPDHKHEGIH  390 (399)
Q Consensus       353 ~~d~~lG~~~i~l~~~-~~~~~~w~~l~~~p~~~~~~Wh  390 (399)
                      +++++||++.+++.+. ....+.||.+++.......+-.
T Consensus        75 ~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  113 (120)
T cd04045          75 GKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLKRLL  113 (120)
T ss_pred             CCCCeeeEEEEeHHHhhCCCCCceEEecCCCcceeeEee
Confidence            8999999999998863 3456667777766543333333

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.67  E-value=9.2e-16  Score=128.28  Aligned_cols=91  Identities=31%  Similarity=0.525  Sum_probs=80.2

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      +.|.|+|++|+||+..+. +.+||||+|.+.     .++++|++++++.||+|||+|.| .++..   ...|.|+|||++
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g-----~~~~kT~vvk~t~nP~WnE~f~f-~i~~~---~~~l~~~V~D~d   71 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG-----NQKVKTRVIKKNLNPVWNEELTL-SVPNP---MAPLKLEVFDKD   71 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEEC-----CEEEEeeeEcCCCCCeecccEEE-EecCC---CCEEEEEEEECC
Confidence            579999999999999887 889999999994     47899999999999999999999 45433   578999999999


Q ss_pred             CCCC-cceeeEEecCcccCCCc
Q psy12136        210 KYGH-DFLGEARFPLNRLRPHI  230 (399)
Q Consensus       210 ~~~~-~~lG~~~i~l~~l~~~~  230 (399)
                      .+++ ++||++.+++.++....
T Consensus        72 ~~~~dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          72 TFSKDDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             CCCCCCEEEEEEEEHHHhhhhh
Confidence            9988 99999999999987543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.67  E-value=5.4e-16  Score=126.44  Aligned_cols=91  Identities=26%  Similarity=0.304  Sum_probs=76.6

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      .++|.|+|++|++|+. +..+.+||||+|++.     ..++||++++++.||+|||+|.|......  ....|.|+|||+
T Consensus        27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~-----~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~   98 (127)
T cd04032          27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFG-----GQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDR   98 (127)
T ss_pred             cEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC-----CccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeC
Confidence            3579999999999985 566789999999994     35889999999999999999999422222  357899999999


Q ss_pred             CCCCC-cceeeEEecCcccC
Q psy12136        209 DKYGH-DFLGEARFPLNRLR  227 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~  227 (399)
                      +..++ ++||++.++|....
T Consensus        99 d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          99 DNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCCCCeeEEEEEEecCCc
Confidence            99977 99999999998654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.66  E-value=1e-15  Score=123.64  Aligned_cols=102  Identities=34%  Similarity=0.483  Sum_probs=88.3

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |+|+|++|++|+..+..+.+||||+|.+.+    ...++|+++.++.||+|||+|.| .+...  ....|.|+|||++..
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~----~~~~~T~v~~~~~~P~Wne~f~~-~~~~~--~~~~l~~~v~d~~~~   73 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNG----EKVFKTKTIKKTLNPVWNESFEV-PVPSR--VRAVLKVEVYDWDRG   73 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECC----CcceeeceecCCCCCcccccEEE-EeccC--CCCEEEEEEEeCCCC
Confidence            579999999999998888899999999953    35689999999999999999999 45432  357899999999988


Q ss_pred             CC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        212 GH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       212 ~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ++ ++||++.+++.++..+.....|++|..
T Consensus        74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~  103 (115)
T cd04040          74 GKDDLLGSAYIDLSDLEPEETTELTLPLDG  103 (115)
T ss_pred             CCCCceEEEEEEHHHcCCCCcEEEEEECcC
Confidence            77 999999999999988877888888864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.66  E-value=8e-16  Score=125.98  Aligned_cols=105  Identities=29%  Similarity=0.424  Sum_probs=88.1

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccC-CCCCeecceEEeceeCcccC-CCceEEEEEEE
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDL-SLQSLHILVLD  207 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~-t~nP~wne~f~f~~v~~~~l-~~~~L~~~V~d  207 (399)
                      +.|.|+|++|++|+..+..+.+||||+|.+.     ...++|+++++ +.||+|||.|.| .+..... ....|.|+|||
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~t~nP~Wne~f~f-~v~~~~~~~~~~l~v~V~d   74 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR-----TQERKSKVAKGDGRNPEWNEKFKF-TVEYPGWGGDTKLILRIMD   74 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEEC-----CEeeeeeEcCCCCCCCcccceEEE-EecCcccCCCCEEEEEEEE
Confidence            5799999999999998888899999999984     35678888774 899999999999 4654422 24689999999


Q ss_pred             cCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        208 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       208 ~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ++..+. ++||++.++|.++..+.....|+.|..
T Consensus        75 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p  108 (124)
T cd04049          75 KDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP  108 (124)
T ss_pred             CccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence            998877 999999999999987777777777764

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.66  E-value=6e-16  Score=125.94  Aligned_cols=102  Identities=26%  Similarity=0.311  Sum_probs=85.4

Q ss_pred             EEEEecCCCCCCCCCCCCcEEEEEEecCC--CCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC--
Q psy12136        135 TLHRAKGLRAMDIHGTSDPFCKLNLVPLT--KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK--  210 (399)
Q Consensus       135 ~V~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~--  210 (399)
                      ..++|++|+..+..+.+||||+|++.+..  .....+||++++++.||+|||+|.|. +....  ...|.|+|||++.  
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~--~~~l~~~V~d~d~~~   81 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEE--VQKLRFEVYDVDSKS   81 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEe--eeEEEEEEEEecCCc
Confidence            46899999999988999999999998643  23346899999999999999999993 44333  3679999999997  


Q ss_pred             --CCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        211 --YGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       211 --~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                        .++ ++||++.+++.++........++.|.
T Consensus        82 ~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          82 KDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence              666 99999999999999877777888773

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.66  E-value=9e-16  Score=125.67  Aligned_cols=91  Identities=24%  Similarity=0.357  Sum_probs=78.1

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeC-CCCceecceEEEEeccCcc-cccEEEEEEEeCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITEL-SKQTLVITVWDKD  350 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l-~~~~l~i~V~d~~  350 (399)
                      |.|.|+|++|++|+..+..+.+||||++++.+    ..++|++..+ +.||.|||+|.|.+..... ....|.|+|||++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~   76 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT----QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD   76 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECC----EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence            57899999999999888888999999999842    5678888774 8999999999999975422 2468999999999


Q ss_pred             CCCCCeeeEEEEEccCC
Q psy12136        351 YGKSNDYLGCLELCCNS  367 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~  367 (399)
                      .++++++||++.|++.+
T Consensus        77 ~~~~d~~iG~~~i~l~~   93 (124)
T cd04049          77 NFSDDDFIGEATIHLKG   93 (124)
T ss_pred             cCCCCCeEEEEEEEhHH
Confidence            88889999999999876

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.65  E-value=1.1e-15  Score=125.38  Aligned_cols=105  Identities=28%  Similarity=0.388  Sum_probs=86.7

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEeccccc-CCCCCeecceEEeceeCcccC--CCceEEEEEEE
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDL--SLQSLHILVLD  207 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~-~t~nP~wne~f~f~~v~~~~l--~~~~L~~~V~d  207 (399)
                      .|+|+|++|++|+..+..+.+||||+|++.+    ..+++|+++. ++.||+|||.|.| .+....+  ....|.|+|||
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f-~v~~~~~~~~~~~l~~~v~d   75 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRF-PLDERLLQQGRLALTIEVYC   75 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEE-EcChHhcccCccEEEEEEEE
Confidence            3899999999999998889999999999963    3678899875 5899999999999 5665532  24789999999


Q ss_pred             cCCCCC-cceeeEEecCcccCCCcc-----eeEEEeecc
Q psy12136        208 DDKYGH-DFLGEARFPLNRLRPHIS-----RDLCLNLCK  240 (399)
Q Consensus       208 ~~~~~~-~~lG~~~i~l~~l~~~~~-----~~~~~~L~~  240 (399)
                      ++..+. ++||++.++|.++.....     +..|+.|..
T Consensus        76 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~  114 (125)
T cd04051          76 ERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR  114 (125)
T ss_pred             CCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC
Confidence            998776 999999999999986654     356777764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.65  E-value=2.2e-15  Score=125.31  Aligned_cols=126  Identities=16%  Similarity=0.226  Sum_probs=95.4

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      +.|.|.|++|++|++++     +|||.|.|.    +....||+++.++.||.|+|.|.|...+.    ...|.|.||..+
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld----~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~k~~   77 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLD----KTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLYRES   77 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEEC----CEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEEEcc
Confidence            57999999999999875     899999995    23457999999999999999999952222    267999998654


Q ss_pred             C-C----CCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeecc
Q psy12136        210 K-Y----GHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK  271 (399)
Q Consensus       210 ~-~----~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~  271 (399)
                      . .    ++.+||.+.||+.++..+...+.|++|......+...   +.......+.|+++++|.+.
T Consensus        78 ~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~---~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          78 DKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSG---GKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             CccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccc---cccccCCCCEEEEEEEEEEe
Confidence            2 2    2389999999999999888888999997643322100   11112456899999999763

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>KOG1011|consensus

Probab=99.65  E-value=4.3e-15  Score=144.06  Aligned_cols=100  Identities=30%  Similarity=0.484  Sum_probs=82.7

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      ..+.++|+.|.+|.++|..|.+||||.+.++     ..++||+++...+||+|||.|.|. ....   ...+.+.|||.|
T Consensus       295 akitltvlcaqgl~akdktg~sdpyvt~qv~-----ktkrrtrti~~~lnpvw~ekfhfe-chns---tdrikvrvwded  365 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-----KTKRRTRTIHQELNPVWNEKFHFE-CHNS---TDRIKVRVWDED  365 (1283)
T ss_pred             eeeEEeeeecccceecccCCCCCCcEEEeec-----ccchhhHhhhhccchhhhhheeee-ecCC---CceeEEEEecCc
Confidence            5789999999999999999999999999994     578899999999999999999993 3332   468999999987


Q ss_pred             CC------------CCcceeeEEecCcccCCCcceeEEEeecc
Q psy12136        210 KY------------GHDFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       210 ~~------------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ..            +++|+|+..|.+..|...  .+.|+.|++
T Consensus       366 ~dlksklrqkl~resddflgqtvievrtlsge--mdvwynlek  406 (1283)
T KOG1011|consen  366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEK  406 (1283)
T ss_pred             ccHHHHHHHHhhhcccccccceeEEEEecccc--hhhhcchhh
Confidence            32            348999999999888643  445666654

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.65  E-value=1.3e-15  Score=124.36  Aligned_cols=88  Identities=25%  Similarity=0.417  Sum_probs=77.7

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  353 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~  353 (399)
                      .|+|+|++|++|+..+..+.+||||++++.+   ...++|++++++.||.|||+|.|.+..    ...|.|+|||++.++
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~   73 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDG---GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFK   73 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECC---ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCC
Confidence            3789999999999998889999999999942   377899999999999999999999963    478999999999876


Q ss_pred             C--CeeeEEEEEccCCC
Q psy12136        354 S--NDYLGCLELCCNSK  368 (399)
Q Consensus       354 ~--d~~lG~~~i~l~~~  368 (399)
                      .  +++||++.+++++.
T Consensus        74 ~~~d~~lG~~~i~l~~l   90 (123)
T cd08382          74 KKDQGFLGCVRIRANAV   90 (123)
T ss_pred             CCCCceEeEEEEEHHHc
Confidence            5  57999999998873

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.65  E-value=1e-15  Score=125.62  Aligned_cols=99  Identities=19%  Similarity=0.327  Sum_probs=83.5

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      ..|+|+|++|++|...+..|.+||||++.+.+    .+++|++++++.||+|||.|.|.+...   ...|.|+|||++..
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~----~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~i~V~d~~~~   75 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG----ESVRSPVQKDTLSPEFDTQAIFYRKKP---RSPIKIQVWNSNLL   75 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC----EEEEeCccCCCCCCcccceEEEEecCC---CCEEEEEEEECCCC
Confidence            57899999999999988889999999999843    678999999999999999999987532   57899999999987


Q ss_pred             CCCeeeEEEEEccCCCCCcchhhhhhh
Q psy12136        353 KSNDYLGCLELCCNSKGDRLRHWVDMM  379 (399)
Q Consensus       353 ~~d~~lG~~~i~l~~~~~~~~~w~~l~  379 (399)
                      + +++||++.+.+++......+|+.|.
T Consensus        76 ~-d~~lG~~~~~l~~~~~~~~~~~~l~  101 (126)
T cd04046          76 C-DEFLGQATLSADPNDSQTLRTLPLR  101 (126)
T ss_pred             C-CCceEEEEEecccCCCcCceEEEcc
Confidence            4 8999999999987554444555543

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.64  E-value=1.3e-15  Score=123.70  Aligned_cols=102  Identities=24%  Similarity=0.318  Sum_probs=86.0

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      +.|+|+|++|++|+..+..+.+||||+|.+.    ...+++|++++++.||+|||.|.| .+...   ...|.|+|||++
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~----~~~~~kT~~~~~t~~P~Wne~f~~-~v~~~---~~~L~v~v~d~~   72 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN----GIVKGRTVTISNTLNPVWDEVLYV-PVTSP---NQKITLEVMDYE   72 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEEC----CEEeeceeEECCCcCCccCceEEE-EecCC---CCEEEEEEEECC
Confidence            4689999999999999988999999999994    235789999999999999999988 35433   368999999999


Q ss_pred             CCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        210 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       210 ~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ..++ ++||++.++|.++... ....|+.|.+
T Consensus        73 ~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~  103 (120)
T cd04045          73 KVGKDRSLGSVEINVSDLIKK-NEDGKYVEYD  103 (120)
T ss_pred             CCCCCCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence            9888 8999999999999876 4566666643

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.64  E-value=3e-15  Score=118.91  Aligned_cols=83  Identities=24%  Similarity=0.556  Sum_probs=68.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc---
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD---  208 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~---  208 (399)
                      |.|+|++|+||.     +.+||||++++.+.+....+.||+++++|+||+|||+|.| .++.    ...|++.|||+   
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i-~l~~----s~~L~~~v~d~~~~   70 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEI-ELEG----SQTLRILCYEKCYS   70 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEE-EeCC----CCEEEEEEEEcccc
Confidence            689999999995     4489999999987543346899999999999999999999 4652    46999999998   


Q ss_pred             ----CCCCC-cceeeEEecCc
Q psy12136        209 ----DKYGH-DFLGEARFPLN  224 (399)
Q Consensus       209 ----~~~~~-~~lG~~~i~l~  224 (399)
                          +..++ ++||.+.+.|.
T Consensus        71 ~~~~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          71 KVKLDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             cccccccCcccEEEEEEEEEC
Confidence                45566 99988777664

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.64  E-value=2.5e-15  Score=124.45  Aligned_cols=88  Identities=24%  Similarity=0.403  Sum_probs=76.6

Q ss_pred             eeEEEEEEeeecCCCCCC----------CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEE
Q psy12136        273 RALIVNLIKCTNLIPMDS----------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTL  342 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~----------~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l  342 (399)
                      +.|.|+|++|++|...+.          .+.+||||++.+.+   ....+|++++++.||.|||+|.|.+.    ....|
T Consensus         4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~---~~~~kT~~~~~t~~P~Wne~f~~~v~----~~~~l   76 (132)
T cd04014           4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD---THIGKTSTKPKTNSPVWNEEFTTEVH----NGRNL   76 (132)
T ss_pred             eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC---EEEeEEeEcCCCCCCCcceeEEEEcC----CCCEE
Confidence            679999999999988775          26799999999952   25579999999999999999999996    24789


Q ss_pred             EEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136        343 VITVWDKDYGKSNDYLGCLELCCNS  367 (399)
Q Consensus       343 ~i~V~d~~~~~~d~~lG~~~i~l~~  367 (399)
                      .|.|||++..+.+++||++.++|++
T Consensus        77 ~~~v~d~~~~~~~~~iG~~~i~l~~  101 (132)
T cd04014          77 ELTVFHDAAIGPDDFVANCTISFED  101 (132)
T ss_pred             EEEEEeCCCCCCCceEEEEEEEhHH
Confidence            9999999988889999999999876

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.63  E-value=1.5e-15  Score=124.18  Aligned_cols=91  Identities=29%  Similarity=0.366  Sum_probs=77.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |+|.|++|++|++.+..+.+||||+|++.+.   ....||++++++.||+|||+|.|. +...  ....|.|+|||++..
T Consensus         2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~~~kT~~v~~t~nP~Wne~f~f~-~~~~--~~~~L~~~V~d~d~~   75 (124)
T cd04037           2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KINDRDNYIPNTLNPVFGKMFELE-ATLP--GNSILKISVMDYDLL   75 (124)
T ss_pred             EEEEEEECcCCCCCCCCCCCCcEEEEEECCe---eccceeeEEECCCCCccceEEEEE-ecCC--CCCEEEEEEEECCCC
Confidence            7899999999999998899999999999632   234678888899999999999993 4322  247899999999998


Q ss_pred             CC-cceeeEEecCcccCC
Q psy12136        212 GH-DFLGEARFPLNRLRP  228 (399)
Q Consensus       212 ~~-~~lG~~~i~l~~l~~  228 (399)
                      ++ ++||++.++|.+...
T Consensus        76 ~~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          76 GSDDLIGETVIDLEDRFF   93 (124)
T ss_pred             CCCceeEEEEEeeccccc
Confidence            77 999999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.62  E-value=7.9e-15  Score=121.35  Aligned_cols=108  Identities=20%  Similarity=0.238  Sum_probs=84.3

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC---------CceEeecceeCCCCcee-cceEEEEeccCcccccEEEE
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---------KRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVI  344 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~---------~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~l~~~~l~i  344 (399)
                      +.|.+++|+||+ .+..|.+||||++++.+...         ..+++|++++++.||+| ||+|.|.+..    +..|.|
T Consensus         3 ~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~----~~~L~v   77 (137)
T cd08691           3 FSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP----TDVLEI   77 (137)
T ss_pred             EEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC----CCEEEE
Confidence            578999999998 67789999999999975432         24799999999999999 9999999853    358999


Q ss_pred             EEEeCCCCCC---CeeeEEEEEccCCCCCcchhhhhhhcCC-CCceeeEEeCCCCCC
Q psy12136        345 TVWDKDYGKS---NDYLGCLELCCNSKGDRLRHWVDMMKYP-DHKHEGIHNLSIKPL  397 (399)
Q Consensus       345 ~V~d~~~~~~---d~~lG~~~i~l~~~~~~~~~w~~l~~~p-~~~~~~Wh~L~~~~~  397 (399)
                      +|||++..++   +++||++.|++.+.-.          .+ ......|++|..+..
T Consensus        78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~----------~~~~~~~~~~~~l~k~~~  124 (137)
T cd08691          78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLE----------RHAIGDQELSYTLGRRTP  124 (137)
T ss_pred             EEEecCCCCCccCCceEEEEEEEHHHhcc----------cccCCceEEEEECCcCCC
Confidence            9999875433   7999999999876321          11 112567888776653

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.62  E-value=5.9e-15  Score=121.34  Aligned_cols=96  Identities=23%  Similarity=0.223  Sum_probs=79.3

Q ss_pred             EEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCCCeee
Q psy12136        279 LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYL  358 (399)
Q Consensus       279 v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~l  358 (399)
                      |++|++|+.  ..+.+||||++++.    ..+++|++++++.||+|||+|.|.+.........|.|+|||++..+++++|
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~----~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~i   75 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFR----GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLI   75 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEEC----CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceE
Confidence            789999987  67889999999994    367899999999999999999999964334467899999999998889999


Q ss_pred             EEEEEccCCCC--Ccchhhhhhhc
Q psy12136        359 GCLELCCNSKG--DRLRHWVDMMK  380 (399)
Q Consensus       359 G~~~i~l~~~~--~~~~~w~~l~~  380 (399)
                      |++.+++++..  .....|+.|..
T Consensus        76 G~~~~~l~~l~~~~~~~~~~~L~~   99 (127)
T cd08373          76 GSATVSLQDLVSEGLLEVTEPLLD   99 (127)
T ss_pred             EEEEEEhhHcccCCceEEEEeCcC
Confidence            99999998633  34445555543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.62  E-value=8.2e-15  Score=120.01  Aligned_cols=117  Identities=23%  Similarity=0.342  Sum_probs=89.1

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      .+|.|+|++|+ |...+..+.+||||+|++..    ....+|++++++.||+|||.|.| .+..    ...|.|+|||++
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~----~~~~kT~v~~~t~~P~Wne~f~~-~~~~----~~~l~~~V~d~~   71 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG----QPPKKTEVSKKTSNPKWNEHFTV-LVTP----QSTLEFKVWSHH   71 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC----cccEEeeeeCCCCCCccccEEEE-EeCC----CCEEEEEEEeCC
Confidence            47999999998 65555578899999999952    24789999999999999999999 4543    368999999999


Q ss_pred             CCCC-cceeeEEecCcccCCCcc-----eeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136        210 KYGH-DFLGEARFPLNRLRPHIS-----RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL  266 (399)
Q Consensus       210 ~~~~-~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l  266 (399)
                      ..+. ++||++.++|.++.....     ...|+++.+..          .......|+|.+.+
T Consensus        72 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~G~~~~~~  124 (125)
T cd04021          72 TLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN----------KGSSVKVGELTVIL  124 (125)
T ss_pred             CCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC----------CCcceeeeeEEEEe
Confidence            9877 999999999999875433     23466665311          11235678777654

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.62  E-value=7.4e-15  Score=118.56  Aligned_cols=89  Identities=37%  Similarity=0.586  Sum_probs=78.2

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  354 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~  354 (399)
                      |+|.|++|++|+..+..+.+||||+|.+.+   ...++|+++.++.||.|||+|.|.+...  ....|.|+|||++..++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~---~~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~~   75 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNG---EKVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGGK   75 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECC---CcceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCCC
Confidence            578999999999988888899999999843   3668999999999999999999998632  45789999999998888


Q ss_pred             CeeeEEEEEccCCC
Q psy12136        355 NDYLGCLELCCNSK  368 (399)
Q Consensus       355 d~~lG~~~i~l~~~  368 (399)
                      +++||++.+++...
T Consensus        76 ~~~iG~~~~~l~~l   89 (115)
T cd04040          76 DDLLGSAYIDLSDL   89 (115)
T ss_pred             CCceEEEEEEHHHc
Confidence            99999999998763

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.61  E-value=4.3e-15  Score=117.99  Aligned_cols=84  Identities=26%  Similarity=0.259  Sum_probs=71.7

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC-CceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeC----
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK----  349 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~----  349 (399)
                      |.|+|.+|+||.     +.+||||++++.+.+. ..+.+|+++++|.||+|||+|.|.+.  .  ...|.|.|||+    
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~--s~~L~~~v~d~~~~~   71 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--G--SQTLRILCYEKCYSK   71 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--C--CCEEEEEEEEccccc
Confidence            679999999995     4589999999876544 37899999999999999999999986  2  46999999998    


Q ss_pred             ---CCCCCCeeeEEEEEccCC
Q psy12136        350 ---DYGKSNDYLGCLELCCNS  367 (399)
Q Consensus       350 ---~~~~~d~~lG~~~i~l~~  367 (399)
                         +..+.|++||++.|.|+.
T Consensus        72 ~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          72 VKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccccccCcccEEEEEEEEECH
Confidence               456789999998888864

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.61  E-value=3.1e-15  Score=119.81  Aligned_cols=98  Identities=24%  Similarity=0.299  Sum_probs=78.7

Q ss_pred             EEEEEeeecCCCCCCCCCCCcEEEEEEecCC-CC-ceEeecceeCCCCceecceEEEEeccCccc----ccEEEEEEEeC
Q psy12136        276 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HK-RKYKTGVKWKTLNPIFNEEFAIETKITELS----KQTLVITVWDK  349 (399)
Q Consensus       276 ~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~-~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~----~~~l~i~V~d~  349 (399)
                      .+..++|++|+..+..+.+||||+|++.+.. .. ..++|++++++.||+|| +|.|.+.  .+.    ...|.|+|||+
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~--~l~~~~~~~~l~~~V~d~   79 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQ--KLCNGDYDRPIKIEVYDY   79 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHH--HhcCCCcCCEEEEEEEEe
Confidence            4566799999999999999999999987643 12 67999999999999999 6777653  232    46899999999


Q ss_pred             CCCCCCeeeEEEEEccCCCCCcchhhh
Q psy12136        350 DYGKSNDYLGCLELCCNSKGDRLRHWV  376 (399)
Q Consensus       350 ~~~~~d~~lG~~~i~l~~~~~~~~~w~  376 (399)
                      +..+++++||++.++++..-....+++
T Consensus        80 d~~~~d~~iG~~~~~l~~l~~~~~~~~  106 (110)
T cd04047          80 DSSGKHDLIGEFETTLDELLKSSPLEF  106 (110)
T ss_pred             CCCCCCcEEEEEEEEHHHHhcCCCceE
Confidence            999999999999999887543333333

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PLN03008 Phospholipase D delta

Probab=99.61  E-value=4.9e-15  Score=150.74  Aligned_cols=126  Identities=21%  Similarity=0.321  Sum_probs=102.2

Q ss_pred             CCCEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEEecCCCC
Q psy12136        128 TTCSLHVTLHRAKGLRAMDI------------------------------------------HGTSDPFCKLNLVPLTKT  165 (399)
Q Consensus       128 ~~~~L~V~V~~a~~L~~~~~------------------------------------------~~~~dpyv~v~l~~~~~~  165 (399)
                      -++.|.|+|++|++|+.+|.                                          .+.+||||+|.|.    .
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg----~   87 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP----Q   87 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC----C
Confidence            35789999999999875211                                          2367999999994    2


Q ss_pred             CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCC
Q psy12136        166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVP  245 (399)
Q Consensus       166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~  245 (399)
                      .++.||++++++.||+|||+|.|. +...   ...|.|+|+|+|.++.++||++.|||.++..+...+.|++|.+...  
T Consensus        88 ~rv~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--  161 (868)
T PLN03008         88 ATLARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASG--  161 (868)
T ss_pred             cceeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCC--
Confidence            356799999999999999999994 5542   3689999999999988999999999999999998999999976322  


Q ss_pred             CccccccccccccceeEEEEEeeecc
Q psy12136        246 REEEVWGEEECWQHGKIFLTLCFSTK  271 (399)
Q Consensus       246 ~~~~~~~~~~~~~~G~l~l~l~~~~~  271 (399)
                              .+....|+|+|++.|.|-
T Consensus       162 --------kp~k~~~kl~v~lqf~pv  179 (868)
T PLN03008        162 --------KPPKAETAIFIDMKFTPF  179 (868)
T ss_pred             --------CCCCCCcEEEEEEEEEEc
Confidence                    123457899999999763

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.61  E-value=1.8e-14  Score=118.51  Aligned_cols=121  Identities=25%  Similarity=0.392  Sum_probs=91.7

Q ss_pred             EEEEEEEEecCCCCCC--CCCCCCcEEEEEEecCCC-CCceEecccccCCC-CCeecceEEeceeCcccCCCceEEEEEE
Q psy12136        131 SLHVTLHRAKGLRAMD--IHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTI-NPEFHEKLTFYSVSETDLSLQSLHILVL  206 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~--~~~~~dpyv~v~l~~~~~-~~~~~rT~~~~~t~-nP~wne~f~f~~v~~~~l~~~~L~~~V~  206 (399)
                      +|+|+|++|+||+..+  ..+..||||++++.+... ...++||+++.++. ||+|||+|.|. +...+  ...|.|+||
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V~   79 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVVY   79 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEEE
Confidence            6999999999999887  567899999999975443 45789999987775 99999999994 44332  357999999


Q ss_pred             EcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        207 DDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       207 d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      |++..++++||++.+++.++..+   ..++.|.....           .....|.|.+.+.+
T Consensus        80 d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~-----------~~~~~~~l~v~~~~  127 (128)
T cd00275          80 DEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKG-----------EPLELSTLFVHIDI  127 (128)
T ss_pred             eCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCC-----------CCCcceeEEEEEEE
Confidence            99988339999999999999643   34566653111           01346788877654

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.60  E-value=6.8e-15  Score=119.11  Aligned_cols=98  Identities=23%  Similarity=0.335  Sum_probs=79.6

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  354 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~  354 (399)
                      |.|+|++|++|+..   +.+||||++++.+   ...++|+++++ .||.|||+|.|.+...++....|.|.+||.+...+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~---~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~   74 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ---VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDR   74 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECC---EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCC
Confidence            78999999999875   7899999999942   25689999999 99999999999998666556788999999887777


Q ss_pred             CeeeEEEEEccCCCCCcchhhhhhh
Q psy12136        355 NDYLGCLELCCNSKGDRLRHWVDMM  379 (399)
Q Consensus       355 d~~lG~~~i~l~~~~~~~~~w~~l~  379 (399)
                      +..+|.+.|+....+...++|++|.
T Consensus        75 ~~~~g~v~l~~~~~~~~~~~w~~L~   99 (117)
T cd08383          75 DIVIGKVALSKLDLGQGKDEWFPLT   99 (117)
T ss_pred             eeEEEEEEecCcCCCCcceeEEECc
Confidence            8899998888665555555555554

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.60  E-value=8.9e-15  Score=119.02  Aligned_cols=89  Identities=31%  Similarity=0.394  Sum_probs=76.1

Q ss_pred             EEEeeecCCCCCCCCCCCcEEEEEEecCC--CC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC---
Q psy12136        278 NLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY---  351 (399)
Q Consensus       278 ~v~~a~~L~~~~~~g~~dpyV~v~l~~~~--~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~---  351 (399)
                      ..++|++|+..+..+.+||||+|++.+..  .. ..++|++++++.||+|||+|.|.+....  ...|.|+|||++.   
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~--~~~l~~~V~d~d~~~~   82 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE--VQKLRFEVYDVDSKSK   82 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe--eeEEEEEEEEecCCcC
Confidence            45789999999988999999999998653  22 5799999999999999999999875433  3579999999997   


Q ss_pred             -CCCCeeeEEEEEccCCC
Q psy12136        352 -GKSNDYLGCLELCCNSK  368 (399)
Q Consensus       352 -~~~d~~lG~~~i~l~~~  368 (399)
                       .+++++||++.+++++.
T Consensus        83 ~~~~~d~iG~~~i~l~~l  100 (120)
T cd04048          83 DLSDHDFLGEAECTLGEI  100 (120)
T ss_pred             CCCCCcEEEEEEEEHHHH
Confidence             78899999999998763

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.59  E-value=7.7e-15  Score=117.49  Aligned_cols=98  Identities=26%  Similarity=0.309  Sum_probs=79.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCC-CCCceEecccccCCCCCeecceEEeceeCcccCC----CceEEEEEE
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS----LQSLHILVL  206 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~----~~~L~~~V~  206 (399)
                      +.+..++|++|+..+..+.+||||+|++.+.. .....++|++++++.||+|| .|.|.   ..++.    ...|.|+||
T Consensus         2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~---~~~l~~~~~~~~l~~~V~   77 (110)
T cd04047           2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP---LQKLCNGDYDRPIKIEVY   77 (110)
T ss_pred             EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE---HHHhcCCCcCCEEEEEEE
Confidence            34667899999999999999999999997532 23457899999999999999 67763   22222    478999999


Q ss_pred             EcCCCCC-cceeeEEecCcccCCCccee
Q psy12136        207 DDDKYGH-DFLGEARFPLNRLRPHISRD  233 (399)
Q Consensus       207 d~~~~~~-~~lG~~~i~l~~l~~~~~~~  233 (399)
                      |++..++ ++||++.+++.++...+..+
T Consensus        78 d~d~~~~d~~iG~~~~~l~~l~~~~~~~  105 (110)
T cd04047          78 DYDSSGKHDLIGEFETTLDELLKSSPLE  105 (110)
T ss_pred             EeCCCCCCcEEEEEEEEHHHHhcCCCce
Confidence            9999988 99999999999998554433

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG2059|consensus

Probab=99.59  E-value=3.3e-15  Score=146.61  Aligned_cols=193  Identities=18%  Similarity=0.188  Sum_probs=145.4

Q ss_pred             cCccccCCCccccccCCCcccCCCCCCCCCCCcccCCCCccccCCcccccCCcccccccccccCCCCCcceEEEEEEEEe
Q psy12136         47 SSATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYD  126 (399)
Q Consensus        47 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~G~i~~~l~y~  126 (399)
                      +++||+|.| ++||+.||++...+.....     .+ +..+|.               .+...+.+.+++|+|++.+...
T Consensus        68 l~fYv~D~d-~~~D~~IGKvai~re~l~~-----~~-~~d~W~---------------~L~~VD~dsEVQG~v~l~l~~~  125 (800)
T KOG2059|consen   68 LSFYVWDRD-LKRDDIIGKVAIKREDLHM-----YP-GKDTWF---------------SLQPVDPDSEVQGKVHLELALT  125 (800)
T ss_pred             EEEEEeccc-cccccccceeeeeHHHHhh-----CC-CCccce---------------eccccCCChhhceeEEEEEEec
Confidence            347899999 9999999998877665533     22 444444               3344567889999999999887


Q ss_pred             CC--CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc----------
Q psy12136        127 ST--TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET----------  194 (399)
Q Consensus       127 ~~--~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~----------  194 (399)
                      ..  ...+++.+++++++.+....+ +|||++|.+..+.. ....+|+++++|.+|.|||.|.| .+...          
T Consensus       126 e~~~~~~~~c~~L~~r~~~P~~~~~-~dp~~~v~~~g~~~-~~~~~T~~~kkt~~p~~~Ev~~f-~~~~~~~~s~ks~~~  202 (800)
T KOG2059|consen  126 EAIQSSGLVCHVLKTRQGLPIINGQ-CDPFARVTLCGPSK-LKEKKTKVKKKTTNPQFDEVFYF-EVTREESYSKKSLFM  202 (800)
T ss_pred             cccCCCcchhhhhhhcccCceeCCC-CCcceEEeecccch-hhccccceeeeccCcchhhheee-eeccccccccchhcC
Confidence            64  478999999999999887444 99999999865433 33479999999999999999999 45544          


Q ss_pred             ---cCCCceEEEEEEE-cCCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        195 ---DLSLQSLHILVLD-DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       195 ---~l~~~~L~~~V~d-~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                         +-....|++++|+ ++.... +|+|++.+++..+........|+.|+..      ....+....+..|.+++.++|.
T Consensus       203 ~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~------~~g~~~~~~~~lGslrl~v~y~  276 (800)
T KOG2059|consen  203 PEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPR------PNGEKSSDGGDLGSLRLNVTYT  276 (800)
T ss_pred             cccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecC------CCcccCCCCCCccceeeeEEee
Confidence               1123578899998 566665 9999999999999877777888888753      1112233357899999999885


Q ss_pred             c
Q psy12136        270 T  270 (399)
Q Consensus       270 ~  270 (399)
                      .
T Consensus       277 ~  277 (800)
T KOG2059|consen  277 E  277 (800)
T ss_pred             e
Confidence            3

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.58  E-value=1.1e-14  Score=119.39  Aligned_cols=91  Identities=19%  Similarity=0.288  Sum_probs=78.0

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeeccee-CCCCceecceEEEEeccCcc--cccEEEEEEEeCC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITEL--SKQTLVITVWDKD  350 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l--~~~~l~i~V~d~~  350 (399)
                      .|.|+|++|++|+..+..+.+||||+|++.+   ..+++|++.. ++.||.|||.|.|.+....+  ....|.|+|||++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~---~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~   77 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER   77 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC---CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence            4789999999999988889999999999964   2667888875 58999999999999975432  2478999999999


Q ss_pred             CCCCCeeeEEEEEccCC
Q psy12136        351 YGKSNDYLGCLELCCNS  367 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~  367 (399)
                      .++++++||++.|++.+
T Consensus        78 ~~~~~~~lG~~~i~l~~   94 (125)
T cd04051          78 PSLGDKLIGEVRVPLKD   94 (125)
T ss_pred             CCCCCCcEEEEEEEHHH
Confidence            88889999999999876

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.57  E-value=3.4e-14  Score=116.23  Aligned_cols=91  Identities=25%  Similarity=0.345  Sum_probs=78.7

Q ss_pred             eeEEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        273 RALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      |.|.|+|++|++|+..+ ..+.+||||++.+.+.  ...++|+++.++.||.|||.|.|.+.  . ....|.|+|||++.
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~--~~~~kT~~~~~~~~P~Wne~~~~~v~--~-~~~~l~~~v~d~~~   76 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR--RELARTKVKKDTSNPVWNETKYILVN--S-LTEPLNLTVYDFND   76 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC--CcceEeeeecCCCCCcceEEEEEEeC--C-CCCEEEEEEEecCC
Confidence            67999999999998655 3567999999999642  36799999999999999999999986  2 35789999999998


Q ss_pred             CCCCeeeEEEEEccCCC
Q psy12136        352 GKSNDYLGCLELCCNSK  368 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~~  368 (399)
                      .+++++||++.+++.+.
T Consensus        77 ~~~d~~iG~~~~~l~~l   93 (124)
T cd04044          77 KRKDKLIGTAEFDLSSL   93 (124)
T ss_pred             CCCCceeEEEEEEHHHh
Confidence            88899999999998863

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.54  E-value=2.8e-14  Score=114.37  Aligned_cols=100  Identities=21%  Similarity=0.297  Sum_probs=80.0

Q ss_pred             CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccC
Q psy12136        148 HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR  227 (399)
Q Consensus       148 ~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~  227 (399)
                      .|.+||||+|++..    ...++|++++++.||+|||.|.| .+...  ....|.|.|||++..++++||++.++|+++.
T Consensus        10 ~G~~dPYv~v~v~~----~~~~kT~v~~~t~nP~Wne~f~f-~v~~~--~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~   82 (111)
T cd04052          10 TGLLSPYAELYLNG----KLVYTTRVKKKTNNPSWNASTEF-LVTDR--RKSRVTVVVKDDRDRHDPVLGSVSISLNDLI   82 (111)
T ss_pred             CCCCCceEEEEECC----EEEEEEeeeccCCCCccCCceEE-EecCc--CCCEEEEEEEECCCCCCCeEEEEEecHHHHH
Confidence            57899999999952    34679999999999999999999 35432  3577999999999984499999999999985


Q ss_pred             CC-cceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        228 PH-ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       228 ~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      .. .....|+.|..                ...|+|++++.|.|
T Consensus        83 ~~~~~~~~w~~L~~----------------~~~G~i~~~~~~~p  110 (111)
T cd04052          83 DATSVGQQWFPLSG----------------NGQGRIRISALWKP  110 (111)
T ss_pred             hhhhccceeEECCC----------------CCCCEEEEEEEEec
Confidence            43 33467777752                24799999999876

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.53  E-value=8e-14  Score=105.59  Aligned_cols=85  Identities=36%  Similarity=0.588  Sum_probs=75.0

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  354 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~  354 (399)
                      |.|+|++|+||+..+..+..||||++.+.+... ..++|+++.++.+|.|||+|.|.+...+.  ..|.|+|||++..++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~-~~~~T~~~~~~~~P~w~e~~~~~~~~~~~--~~l~~~V~~~~~~~~   77 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES-TKYKTKVKKNTSNPVWNEEFEFPLDDPDL--DSLSFEVWDKDSFGK   77 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC-EEEEECCBSSBSSEEEEEEEEEEESHGCG--TEEEEEEEEETSSSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeee-eeeeeeeeeccccceeeeeeeeeeecccc--cceEEEEEECCCCCC
Confidence            689999999999988888999999999986443 67999999999999999999999875554  459999999999988


Q ss_pred             CeeeEEEE
Q psy12136        355 NDYLGCLE  362 (399)
Q Consensus       355 d~~lG~~~  362 (399)
                      +++||++.
T Consensus        78 ~~~iG~~~   85 (85)
T PF00168_consen   78 DELIGEVK   85 (85)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEEC
Confidence            99999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.53  E-value=6.5e-14  Score=115.22  Aligned_cols=104  Identities=25%  Similarity=0.399  Sum_probs=84.3

Q ss_pred             eeEEEEEEeeecCCCCC--CCCCCCcEEEEEEecCCC--CceEeecceeCCC-CceecceEEEEeccCcccccEEEEEEE
Q psy12136        273 RALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTL-NPIFNEEFAIETKITELSKQTLVITVW  347 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~--~~g~~dpyV~v~l~~~~~--~~~~kT~v~~~t~-nP~wne~f~f~v~~~~l~~~~l~i~V~  347 (399)
                      .+|+|+|++|+||+..+  ..+..||||++++.+...  ..+++|+++.++. ||.|||+|.|.+...+  ...|.|+||
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~   79 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVY   79 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEE
Confidence            47899999999999887  477899999999976543  3789999988775 9999999999987433  357999999


Q ss_pred             eCCCCCCCeeeEEEEEccCCCCCcchhhhhhhc
Q psy12136        348 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK  380 (399)
Q Consensus       348 d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~  380 (399)
                      |++.. ++++||++.++++....+. +|+.|+.
T Consensus        80 d~~~~-~~~~iG~~~~~l~~l~~g~-~~~~l~~  110 (128)
T cd00275          80 DEDSG-DDDFLGQACLPLDSLRQGY-RHVPLLD  110 (128)
T ss_pred             eCCCC-CCcEeEEEEEEhHHhcCce-EEEEecC
Confidence            99987 8999999999998764333 3455543

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.52  E-value=9.8e-14  Score=113.29  Aligned_cols=95  Identities=28%  Similarity=0.403  Sum_probs=81.1

Q ss_pred             eEEEEEEeeecCCCCCC--CC--CCCcEEEEEEecCCCCceEeecceeCCCC--ceecceEEEEecc-------------
Q psy12136        274 ALIVNLIKCTNLIPMDS--NG--FSDPFIKLYLKPDLHKRKYKTGVKWKTLN--PIFNEEFAIETKI-------------  334 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~--~g--~~dpyV~v~l~~~~~~~~~kT~v~~~t~n--P~wne~f~f~v~~-------------  334 (399)
                      .|+|.|++|++++..+.  .|  .+||||++.+.+. ...+++|.++++++|  |.||+.|.|++..             
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~   79 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL-EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE   79 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccC-cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence            37899999999665433  55  4999999999874 238999999999999  9999999999876             


Q ss_pred             --------CcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC
Q psy12136        335 --------TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG  369 (399)
Q Consensus       335 --------~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~  369 (399)
                              +.+....|.|+|||.|.++.|++||.++|++....
T Consensus        80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~  122 (133)
T cd08374          80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILP  122 (133)
T ss_pred             cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcc
Confidence                    45566889999999999999999999999998654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.47  E-value=2.9e-13  Score=102.47  Aligned_cols=84  Identities=32%  Similarity=0.606  Sum_probs=72.9

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |.|+|++|+||...+..+..+|||++.+.....  ..++|++++++.+|.|||.|.|. +...+.  ..|.|+|||++..
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~--~~l~~~V~~~~~~   75 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFP-LDDPDL--DSLSFEVWDKDSF   75 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEE-ESHGCG--TEEEEEEEEETSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeee-eecccc--cceEEEEEECCCC
Confidence            789999999999988888999999999975433  67999999999999999999994 665554  4499999999999


Q ss_pred             CC-cceeeEE
Q psy12136        212 GH-DFLGEAR  220 (399)
Q Consensus       212 ~~-~~lG~~~  220 (399)
                      ++ ++||++.
T Consensus        76 ~~~~~iG~~~   85 (85)
T PF00168_consen   76 GKDELIGEVK   85 (85)
T ss_dssp             SSEEEEEEEE
T ss_pred             CCCCEEEEEC
Confidence            97 9999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.46  E-value=4.6e-13  Score=109.64  Aligned_cols=87  Identities=25%  Similarity=0.325  Sum_probs=74.6

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      ..|.|+|.+|+ |...+..+.+||||+|++.+   ...++|++++++.||+|||+|.|.+..    ...|.|+|||++..
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~---~~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~~   73 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG---QPPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHTL   73 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC---cccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCCC
Confidence            36899999998 55555578899999999953   147899999999999999999999852    36899999999998


Q ss_pred             CCCeeeEEEEEccCC
Q psy12136        353 KSNDYLGCLELCCNS  367 (399)
Q Consensus       353 ~~d~~lG~~~i~l~~  367 (399)
                      +.+++||++.+++.+
T Consensus        74 ~~~~~iG~~~i~l~~   88 (125)
T cd04021          74 KADVLLGEASLDLSD   88 (125)
T ss_pred             CCCcEEEEEEEEHHH
Confidence            899999999999875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.44  E-value=3e-13  Score=108.38  Aligned_cols=85  Identities=26%  Similarity=0.389  Sum_probs=67.6

Q ss_pred             CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCC-
Q psy12136        290 SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK-  368 (399)
Q Consensus       290 ~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~-  368 (399)
                      .+|.+||||+|.+.+   ...++|++++++.||.|||.|.|.+.  +.....|.|.|||++.+ ++++||.+.++|++. 
T Consensus         9 ~~G~~dPYv~v~v~~---~~~~kT~v~~~t~nP~Wne~f~f~v~--~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~   82 (111)
T cd04052           9 KTGLLSPYAELYLNG---KLVYTTRVKKKTNNPSWNASTEFLVT--DRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLI   82 (111)
T ss_pred             cCCCCCceEEEEECC---EEEEEEeeeccCCCCccCCceEEEec--CcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHH
Confidence            468899999999942   25689999999999999999999986  33457899999999988 899999999998763 


Q ss_pred             --CCcchhhhhhhc
Q psy12136        369 --GDRLRHWVDMMK  380 (399)
Q Consensus       369 --~~~~~~w~~l~~  380 (399)
                        +.....|+.|..
T Consensus        83 ~~~~~~~~w~~L~~   96 (111)
T cd04052          83 DATSVGQQWFPLSG   96 (111)
T ss_pred             hhhhccceeEECCC
Confidence              222345555543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.44  E-value=4e-13  Score=148.89  Aligned_cols=119  Identities=24%  Similarity=0.387  Sum_probs=95.9

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      +.|.|+|++|+||.  +..+.+||||+|.+.    ...++||++++++.||+|||.|.| .+.... ....|.|+|||+|
T Consensus      1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g----~~~~~kTkvvk~~~nP~Wne~f~~-~~~~p~-~~~~l~iev~d~d 2051 (2102)
T PLN03200       1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLG----NGPPRQTKVVSHSSSPEWKEGFTW-AFDSPP-KGQKLHISCKSKN 2051 (2102)
T ss_pred             cceEEEEeeccccc--cccCCCCCeEEEEEC----CCCcccccccCCCCCCCcccceee-eecCCC-CCCceEEEEEecC
Confidence            78999999999998  346789999999995    244789999999999999999997 233221 2357999999999


Q ss_pred             CCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCcccccccccccccee---EEEEEeeec
Q psy12136        210 KYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGK---IFLTLCFST  270 (399)
Q Consensus       210 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~---l~l~l~~~~  270 (399)
                      .++++.||.+.|++.++..++....|++|.+.              ....|.   |.+.+.|.+
T Consensus      2052 ~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~--------------~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2052 TFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPE--------------SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             ccCCCCCceEEEEHHHHhcCceeeeeeecCcc--------------cccCCCcceEEEEEEecC
Confidence            99889999999999999988887888888631              134566   888777654

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.44  E-value=9.5e-13  Score=109.50  Aligned_cols=101  Identities=14%  Similarity=0.242  Sum_probs=77.4

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC-
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY-  351 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~-  351 (399)
                      ..|.|.|++|++|++++     +|||++.+.+   ....+|+++.++.||.|||.|.|.....   -..|.|.||+.+. 
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~---~~vaRT~v~~~~~nP~W~E~F~f~~~~~---~~~l~v~v~k~~~~   79 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLDK---TLYARTTSKLKTDTLFWGEHFEFSNLPP---VSVITVNLYRESDK   79 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEECC---EEEEEEEEEcCCCCCcceeeEEecCCCc---ccEEEEEEEEccCc
Confidence            57899999999998753     7999999952   2567999999999999999999976432   2579999986552 


Q ss_pred             C---CCCeeeEEEEEccCC--CCCcchhhhhhhcCCCC
Q psy12136        352 G---KSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDH  384 (399)
Q Consensus       352 ~---~~d~~lG~~~i~l~~--~~~~~~~w~~l~~~p~~  384 (399)
                      .   .++.+||.+.|++..  .+...+.||+|+...+.
T Consensus        80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~  117 (146)
T cd04013          80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGN  117 (146)
T ss_pred             cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCC
Confidence            2   257899999999876  34556666666654443

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.44  E-value=6.5e-13  Score=108.47  Aligned_cols=97  Identities=26%  Similarity=0.350  Sum_probs=81.4

Q ss_pred             EEEEEEEEecCCCCCC--CCC--CCCcEEEEEEecCCCCCceEecccccCCCC--CeecceEEeceeCc-----------
Q psy12136        131 SLHVTLHRAKGLRAMD--IHG--TSDPFCKLNLVPLTKTSHRLRTKTCLRTIN--PEFHEKLTFYSVSE-----------  193 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~--~~~--~~dpyv~v~l~~~~~~~~~~rT~~~~~t~n--P~wne~f~f~~v~~-----------  193 (399)
                      .|+|.|.+|++++..+  ..|  .+||||++.|.+.  ...+++|.+..+++|  |+||+.|.|+ +..           
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~   77 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIK   77 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEe
Confidence            3899999999966543  355  4999999999875  257899999999999  9999999985 554           


Q ss_pred             ----------ccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCc
Q psy12136        194 ----------TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI  230 (399)
Q Consensus       194 ----------~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~  230 (399)
                                +.+....|.|+|||.|.++. ++||+++++|..+..+.
T Consensus        78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                      55667899999999999988 99999999999887543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1326|consensus

Probab=99.43  E-value=3.1e-13  Score=137.33  Aligned_cols=238  Identities=25%  Similarity=0.317  Sum_probs=159.2

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      ...+|.|++|-+|.+.|.+|.+||||+|.++.   ....-++..+.+|+||+|++.|.+.   ........|.+.|||+|
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk---~~~~d~~~yip~tlnPVfgkmfel~---~~lp~ek~l~v~vyd~D  686 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK---KRTLDRAHYIPNTLNPVFGKMFELE---CLLPFEKDLIVEVYDHD  686 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeecc---chhhhhhhcCcCCCCcHHHHHHHhh---cccchhhcceeEEEEee
Confidence            45679999999999999999999999999953   1223567789999999999999873   22222478999999999


Q ss_pred             CCCC-cceeeEEecCcccCCC-------cceeEEEeec-ccCC----------------CCCc-----------------
Q psy12136        210 KYGH-DFLGEARFPLNRLRPH-------ISRDLCLNLC-KHYP----------------VPRE-----------------  247 (399)
Q Consensus       210 ~~~~-~~lG~~~i~l~~l~~~-------~~~~~~~~L~-~~~~----------------~~~~-----------------  247 (399)
                      ..+. +.||+..+.|..-...       -..++.+.-. .|..                ++..                 
T Consensus       687 ~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~~  766 (1105)
T KOG1326|consen  687 LEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESDI  766 (1105)
T ss_pred             cccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhhh
Confidence            9987 9999999998753211       0111110000 0100                0000                 


Q ss_pred             -----------------------------------cc----cccccccccceeEEEEEeeecc---------------ce
Q psy12136        248 -----------------------------------EE----VWGEEECWQHGKIFLTLCFSTK---------------KR  273 (399)
Q Consensus       248 -----------------------------------~~----~~~~~~~~~~G~l~l~l~~~~~---------------~~  273 (399)
                                                         .+    .....+...+|++.+-+.+.|.               ..
T Consensus       767 ~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~  846 (1105)
T KOG1326|consen  767 YDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKY  846 (1105)
T ss_pred             hcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhe
Confidence                                               00    0000123456666665544432               57


Q ss_pred             eEEEEEEeeecCCCCCCC----CCCCcEEEEEEecCCCCceEeecceeCCCC--ceecceEEEEec---cCccc------
Q psy12136        274 ALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTLN--PIFNEEFAIETK---ITELS------  338 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~----g~~dpyV~v~l~~~~~~~~~kT~v~~~t~n--P~wne~f~f~v~---~~~l~------  338 (399)
                      .++|.|..-.++...+..    ..+|.||+--+.++. ..+++|.+.+.++.  -.||..|.|...   +++++      
T Consensus       847 ~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gde-e~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke  925 (1105)
T KOG1326|consen  847 ELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDE-EEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKE  925 (1105)
T ss_pred             eEEEEEeeccceeecCccceeeeccceEEecccccch-hhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhh
Confidence            789999988877666553    338999998886532 37899999887753  456666665522   11111      


Q ss_pred             ------------ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchh
Q psy12136        339 ------------KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRH  374 (399)
Q Consensus       339 ------------~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~  374 (399)
                                  -..|.|+|||.|.++.|++||-.+++|+....++.+
T Consensus       926 ~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~s  973 (1105)
T KOG1326|consen  926 YSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKS  973 (1105)
T ss_pred             hccccccccccCchheEEEecccCccChhhhhhheeechhhCcCCCCC
Confidence                        145999999999999999999999999975544444

>KOG1326|consensus

Probab=99.43  E-value=1.3e-13  Score=140.08  Aligned_cols=91  Identities=25%  Similarity=0.420  Sum_probs=77.6

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      -..+|.|++|-+|.+.|.+|.+||||++.++...  ..-+...+.+|.||+|++.|.+.+..  ..+..++++|||+|..
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~--~~d~~~yip~tlnPVfgkmfel~~~l--p~ek~l~v~vyd~D~~  688 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKR--TLDRAHYIPNTLNPVFGKMFELECLL--PFEKDLIVEVYDHDLE  688 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeeccch--hhhhhhcCcCCCCcHHHHHHHhhccc--chhhcceeEEEEeecc
Confidence            3467999999999999999999999999996311  45677789999999999998887653  3457899999999999


Q ss_pred             CCCeeeEEEEEccCC
Q psy12136        353 KSNDYLGCLELCCNS  367 (399)
Q Consensus       353 ~~d~~lG~~~i~l~~  367 (399)
                      +.|+.||+..|+++.
T Consensus       689 ~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  689 AQDEKIGETTIDLEN  703 (1105)
T ss_pred             cccchhhceehhhhh
Confidence            999999999999874

>KOG0905|consensus

Probab=99.42  E-value=1.9e-13  Score=140.36  Aligned_cols=126  Identities=25%  Similarity=0.387  Sum_probs=113.1

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      ..+..|+|+++++|.  +++|.|.|.-|++|+-...+..+||||+.+|+|+.....++||+++++|+||.|||+..+..+
T Consensus      1508 p~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~ 1585 (1639)
T KOG0905|consen 1508 PGEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGF 1585 (1639)
T ss_pred             ccccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCC
Confidence            334567999999995  999999999999998777677899999999999888788999999999999999999999778


Q ss_pred             CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      +.+.+..+.|+++||..+.... .++|.+.|+|.++...+....|+.|.
T Consensus      1586 p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1586 PKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred             chhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence            8888988999999999999888 99999999999998887766777774

>PLN03008 Phospholipase D delta

Probab=99.40  E-value=1.4e-12  Score=133.07  Aligned_cols=86  Identities=20%  Similarity=0.316  Sum_probs=70.2

Q ss_pred             CCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCC--C
Q psy12136        292 GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--G  369 (399)
Q Consensus       292 g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~--~  369 (399)
                      +++||||+|.+..   .++.+|++++++.||+|||+|.|.+..  . ...|.|+|||++.++ +++||++.|++.+.  +
T Consensus        75 ~tSDPYV~I~Lg~---~rv~RTrVi~n~~NPvWNE~F~f~vah--~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~G  147 (868)
T PLN03008         75 ITSDPYVTVVVPQ---ATLARTRVLKNSQEPLWDEKFNISIAH--P-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASG  147 (868)
T ss_pred             CCCCceEEEEECC---cceeeEEeCCCCCCCCcceeEEEEecC--C-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCC
Confidence            4679999999942   357799999999999999999999873  2 368999999999996 58999999999873  4


Q ss_pred             CcchhhhhhhcCCCC
Q psy12136        370 DRLRHWVDMMKYPDH  384 (399)
Q Consensus       370 ~~~~~w~~l~~~p~~  384 (399)
                      ...+.|++|+..-++
T Consensus       148 e~vd~Wl~Ll~~~~k  162 (868)
T PLN03008        148 ERISGWFPVLGASGK  162 (868)
T ss_pred             CceEEEEEccccCCC
Confidence            556677777765543

>KOG1013|consensus

Probab=99.39  E-value=1.3e-12  Score=118.45  Aligned_cols=114  Identities=30%  Similarity=0.419  Sum_probs=103.6

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      ..+.+|+|.+++.|......|.|.+++|..|..+|.++.+||||++++.|+....-+++|.+.+++.||+||+.|.| .+
T Consensus       215 ~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~-~i  293 (362)
T KOG1013|consen  215 EDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFY-DI  293 (362)
T ss_pred             chhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccc-cC
Confidence            35789999999999999999999999999999999999999999999998777677899999999999999999999 79


Q ss_pred             CcccCCCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136        192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL  226 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l  226 (399)
                      .+.+|....+.|.|||++..+. +++|-+...+...
T Consensus       294 ~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~rr  329 (362)
T KOG1013|consen  294 GPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYRR  329 (362)
T ss_pred             CccchhcceEEEeecccCCCcCccCCCccccccccc
Confidence            9999999999999999999877 9999876655443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.37  E-value=9.4e-13  Score=146.00  Aligned_cols=102  Identities=21%  Similarity=0.172  Sum_probs=85.6

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      -|.|.|+|++|.||.  +..+.+||||++.++.   ..++||++++++.||+|||.|+|.+..+. .+..|+|+|||+|.
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~---~~~~kTkvvk~~~nP~Wne~f~~~~~~p~-~~~~l~iev~d~d~ 2052 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN---GPPRQTKVVSHSSSPEWKEGFTWAFDSPP-KGQKLHISCKSKNT 2052 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECC---CCcccccccCCCCCCCcccceeeeecCCC-CCCceEEEEEecCc
Confidence            589999999999997  4578899999999963   25789999999999999999998876332 23679999999999


Q ss_pred             CCCCeeeEEEEEccCC--CCCcchhhhhhhc
Q psy12136        352 GKSNDYLGCLELCCNS--KGDRLRHWVDMMK  380 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~--~~~~~~~w~~l~~  380 (399)
                      +++ +.||++.|++..  .+..+..||.|..
T Consensus      2053 f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200       2053 FGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred             cCC-CCCceEEEEHHHHhcCceeeeeeecCc
Confidence            864 599999999986  3567778888885

>KOG1328|consensus

Probab=99.36  E-value=5.5e-13  Score=131.18  Aligned_cols=116  Identities=34%  Similarity=0.518  Sum_probs=102.7

Q ss_pred             CCCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC--CCceEecccccCCCCCeecceEEe
Q psy12136        111 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK--TSHRLRTKTCLRTINPEFHEKLTF  188 (399)
Q Consensus       111 ~~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~~~rT~~~~~t~nP~wne~f~f  188 (399)
                      ......|.+.+.+.|....++|.|.|+-|+++.+.|.+|.+||||.|.+.|...  .-..+||+|+++|+||+|+|+|.|
T Consensus       928 la~~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeF 1007 (1103)
T KOG1328|consen  928 LADHQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEF 1007 (1103)
T ss_pred             HhhCcCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheee
Confidence            344567889999999999999999999999999999999999999999988443  234689999999999999999999


Q ss_pred             ceeCcccCC--CceEEEEEEEcCCCCC-cceeeEEecCcccC
Q psy12136        189 YSVSETDLS--LQSLHILVLDDDKYGH-DFLGEARFPLNRLR  227 (399)
Q Consensus       189 ~~v~~~~l~--~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~  227 (399)
                       .|+++...  ...|.|+|+|+|-.+. ||-|++.+.|+.+.
T Consensus      1008 -sVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1008 -SVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             -ecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence             58877665  4789999999999988 99999999998875

>KOG1011|consensus

Probab=99.35  E-value=9.1e-13  Score=128.14  Aligned_cols=105  Identities=27%  Similarity=0.524  Sum_probs=92.5

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      ...++++|++|.+|.+.|..|++||||.+..    ++.+++|+++.+.+||+|||.|.|.+...   ...|+++|||.|.
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv----~ktkrrtrti~~~lnpvw~ekfhfechns---tdrikvrvwded~  366 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQV----GKTKRRTRTIHQELNPVWNEKFHFECHNS---TDRIKVRVWDEDN  366 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEee----cccchhhHhhhhccchhhhhheeeeecCC---CceeEEEEecCcc
Confidence            4679999999999999999999999999998    45889999999999999999999999743   4789999999884


Q ss_pred             C-----------CCCeeeEEEEEccCCCCCcchhhhhhhcCCC
Q psy12136        352 G-----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPD  383 (399)
Q Consensus       352 ~-----------~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~  383 (399)
                      .           ..|+|||+..|.+.....+.+-||+|-.+-+
T Consensus       367 dlksklrqkl~resddflgqtvievrtlsgemdvwynlekrtd  409 (1283)
T KOG1011|consen  367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTD  409 (1283)
T ss_pred             cHHHHHHHHhhhcccccccceeEEEEecccchhhhcchhhccc
Confidence            2           4689999999999988888999998876544

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.32  E-value=1.5e-11  Score=95.62  Aligned_cols=96  Identities=33%  Similarity=0.547  Sum_probs=79.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK  210 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~  210 (399)
                      .|.|.|++|++|......+..+|||++.+.+..  ....+|+++.++.||.|||+|.|. +....  ...|.|+|||.+.
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~   75 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDR   75 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCC
Confidence            378999999999988766778999999997532  257899999999999999999994 44332  5789999999998


Q ss_pred             CCC-cceeeEEecCcccCCCcc
Q psy12136        211 YGH-DFLGEARFPLNRLRPHIS  231 (399)
Q Consensus       211 ~~~-~~lG~~~i~l~~l~~~~~  231 (399)
                      .+. .++|.+.+++.++..+..
T Consensus        76 ~~~~~~~G~~~~~l~~~~~~~~   97 (101)
T smart00239       76 FGRDDFIGQVTIPLSDLLLGGR   97 (101)
T ss_pred             ccCCceeEEEEEEHHHcccCcc
Confidence            876 999999999998876543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG0905|consensus

Probab=99.31  E-value=1.7e-12  Score=133.56  Aligned_cols=112  Identities=26%  Similarity=0.351  Sum_probs=101.0

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEE-ec
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TK  333 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~-v~  333 (399)
                      ....|+|++++.|.  .+.|+|.|..+++|+....+..+|||||.++.++.++ .++||+++++|+||.|||...|. ++
T Consensus      1509 ~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred             cccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCc
Confidence            45678999999998  7999999999999987777788999999999998877 89999999999999999999998 66


Q ss_pred             cCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC
Q psy12136        334 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG  369 (399)
Q Consensus       334 ~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~  369 (399)
                      .+.+.++.|++.||..+....+.+||.+.|+|....
T Consensus      1587 ~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~ 1622 (1639)
T KOG0905|consen 1587 KEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVD 1622 (1639)
T ss_pred             hhhhhhheeeeeeecccceeeeeeeeeeecchhhcc
Confidence            667777999999999998889999999999998744

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.31  E-value=2.3e-11  Score=94.64  Aligned_cols=97  Identities=37%  Similarity=0.466  Sum_probs=80.0

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK  353 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~  353 (399)
                      .+.+.|++|++|......+..+|||++++.... ...++|+++.++.||.|||.|.|.+....  ...|.|+|||.+..+
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~   77 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDP-KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFG   77 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc-cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCcc
Confidence            367899999999887666679999999997532 25799999999999999999999987432  578999999999877


Q ss_pred             CCeeeEEEEEccCCCCCcch
Q psy12136        354 SNDYLGCLELCCNSKGDRLR  373 (399)
Q Consensus       354 ~d~~lG~~~i~l~~~~~~~~  373 (399)
                      .+.+||.+.+++.....+..
T Consensus        78 ~~~~~G~~~~~l~~~~~~~~   97 (101)
T smart00239       78 RDDFIGQVTIPLSDLLLGGR   97 (101)
T ss_pred             CCceeEEEEEEHHHcccCcc
Confidence            78999999999876543333

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1327|consensus

Probab=99.27  E-value=5.5e-11  Score=115.85  Aligned_cols=206  Identities=25%  Similarity=0.307  Sum_probs=150.1

Q ss_pred             CCCCCCCCCcEEEEEEec--------------CCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        144 AMDIHGTSDPFCKLNLVP--------------LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       144 ~~~~~~~~dpyv~v~l~~--------------~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      +.+.....+|.|.+....              +..+....+|.++.+.+||.|-+.|... ...+.  .+.|+|.+++.+
T Consensus         4 ~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~-y~fE~--vQ~l~~~~~~~~   80 (529)
T KOG1327|consen    4 AYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQ-YRFEK--VQLLRFEVYDID   80 (529)
T ss_pred             ccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechh-heeee--eeeEEEEEeecC
Confidence            344455566666665421              2223456699999999999999988763 22232  378999999876


Q ss_pred             CC----CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeeccceeEEEEEEeeec
Q psy12136        210 KY----GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTN  284 (399)
Q Consensus       210 ~~----~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~L~v~v~~a~~  284 (399)
                      ..    .. +|+|++...+.++.........+.+...             .....|.|.+.+.-.........-.++|++
T Consensus        81 ~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~-------------~~~~~g~iti~aee~~~~~~~~~~~~~~~~  147 (529)
T KOG1327|consen   81 SRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPG-------------KNAGSGTITISAEEDESDNDVVQFSFRAKN  147 (529)
T ss_pred             CccCCcchhcccceeeeehhhhhhhhhhhhhhhcccC-------------ccCCcccEEEEeecccccCceeeeeeeeee
Confidence            54    34 9999999999998765443332223211             235688888887665555566666778999


Q ss_pred             CCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc----ccEEEEEEEeCCCCCCCeee
Q psy12136        285 LIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS----KQTLVITVWDKDYGKSNDYL  358 (399)
Q Consensus       285 L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~----~~~l~i~V~d~~~~~~d~~l  358 (399)
                      |...+..+++|||..++-..+.+.  ..++|.+++++++|.|.+   |.+....++    +..++|.+||++..+++++|
T Consensus       148 ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~i  224 (529)
T KOG1327|consen  148 LDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLI  224 (529)
T ss_pred             cCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcCce
Confidence            999999999999999997643333  789999999999999998   555544444    37799999999999889999


Q ss_pred             EEEEEccCCC
Q psy12136        359 GCLELCCNSK  368 (399)
Q Consensus       359 G~~~i~l~~~  368 (399)
                      |++.-.+...
T Consensus       225 g~~~tt~~~~  234 (529)
T KOG1327|consen  225 GKFQTTLSEL  234 (529)
T ss_pred             eEecccHHHh
Confidence            9999887654

>cd00030 C2 C2 domain

Probab=99.27  E-value=4.3e-11  Score=92.79  Aligned_cols=99  Identities=35%  Similarity=0.602  Sum_probs=81.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      |.|.|++|++|.........+|||.+.+.+    ....+|+++.++.||.|||.|.|. +...  ....|.|+||+.+..
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~   73 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRF   73 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCC
Confidence            579999999999877677899999999963    377899999999999999999993 4442  357899999999988


Q ss_pred             CC-cceeeEEecCcccC-CCcceeEEEe
Q psy12136        212 GH-DFLGEARFPLNRLR-PHISRDLCLN  237 (399)
Q Consensus       212 ~~-~~lG~~~i~l~~l~-~~~~~~~~~~  237 (399)
                      +. .+||.+.+++.++. .......|++
T Consensus        74 ~~~~~ig~~~~~l~~l~~~~~~~~~~~~  101 (102)
T cd00030          74 SKDDFLGEVEIPLSELLDSGKEGELWLP  101 (102)
T ss_pred             CCCceeEEEEEeHHHhhhcCCcCcceec
Confidence            76 99999999999987 4444445544

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd00030 C2 C2 domain

Probab=99.25  E-value=6.9e-11  Score=91.59  Aligned_cols=89  Identities=40%  Similarity=0.600  Sum_probs=76.6

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  354 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~  354 (399)
                      |.|.|++|++|......+..+|||.+.+.+   ...++|.+..++.||.||+.|.|.+...  ....|.|.||+++..+.
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~---~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~   75 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG---KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSK   75 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc---CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCCC
Confidence            578999999998776777899999999964   2778999999999999999999999742  35789999999998877


Q ss_pred             CeeeEEEEEccCCC
Q psy12136        355 NDYLGCLELCCNSK  368 (399)
Q Consensus       355 d~~lG~~~i~l~~~  368 (399)
                      +.+||++.+.+...
T Consensus        76 ~~~ig~~~~~l~~l   89 (102)
T cd00030          76 DDFLGEVEIPLSEL   89 (102)
T ss_pred             CceeEEEEEeHHHh
Confidence            89999999998763

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02223 phosphoinositide phospholipase C

Probab=99.22  E-value=6.4e-11  Score=116.46  Aligned_cols=108  Identities=18%  Similarity=0.237  Sum_probs=84.7

Q ss_pred             eeEEEEEEeeecCCCC-----CCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEE
Q psy12136        273 RALIVNLIKCTNLIPM-----DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV  346 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~-----~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V  346 (399)
                      ..|.|+|+.|.+++..     +.....||||+|.+.+-... .+++|.+..++.||+|||+|.|.+...++  +.|.|+|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL--AlLrf~V  486 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL--ALISFEV  486 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc--eEEEEEE
Confidence            5789999999987521     12345799999999753322 56778888888999999999999987665  4899999


Q ss_pred             EeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCC
Q psy12136        347 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD  383 (399)
Q Consensus       347 ~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~  383 (399)
                      +|+|..+.++++|+..|++.+...+++|- .|+..-+
T Consensus       487 ~D~D~~~~ddfiGQ~~LPv~~Lr~GyR~V-pL~~~~g  522 (537)
T PLN02223        487 YDYEVSTADAFCGQTCLPVSELIEGIRAV-PLYDERG  522 (537)
T ss_pred             EecCCCCCCcEEEEEecchHHhcCCceeE-eccCCCc
Confidence            99998888999999999999877776543 4444433

>PLN02223 phosphoinositide phospholipase C

Probab=99.21  E-value=6.9e-11  Score=116.21  Aligned_cols=104  Identities=18%  Similarity=0.278  Sum_probs=81.8

Q ss_pred             CEEEEEEEEecCCCCC-----CCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEE
Q psy12136        130 CSLHVTLHRAKGLRAM-----DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHIL  204 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~-----~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~  204 (399)
                      ..|.|+|+.|++++..     +....+||||+|.+.+-.....+++|++..++.||+|||+|.| .+...++  ..|+|.
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F-~i~~PEL--AlLrf~  485 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTF-PLTYPDL--ALISFE  485 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEE-EEEccCc--eEEEEE
Confidence            5799999999998521     2234589999999975333445678888888999999999999 4655554  689999


Q ss_pred             EEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        205 VLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       205 V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      |+|+|..+. +|+|++.+|+..|..+-   .+++|.
T Consensus       486 V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~  518 (537)
T PLN02223        486 VYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLY  518 (537)
T ss_pred             EEecCCCCCCcEEEEEecchHHhcCCc---eeEecc
Confidence            999998877 99999999999998764   334564

>PLN02952 phosphoinositide phospholipase C

Probab=99.17  E-value=3.8e-10  Score=113.29  Aligned_cols=106  Identities=25%  Similarity=0.341  Sum_probs=83.8

Q ss_pred             CCEEEEEEEEecCCCCCC------CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEE
Q psy12136        129 TCSLHVTLHRAKGLRAMD------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLH  202 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~------~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~  202 (399)
                      ...|.|+|+.|.+|+...      .....||||+|.+.+-.....+++|+++.++.||+|||+|.|. +...++  ..|+
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PEL--Allr  545 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPEL--ALLR  545 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCc--cEEE
Confidence            368999999999885321      1134699999999753334567899999999999999999994 655554  6899


Q ss_pred             EEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        203 ILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       203 ~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      |.|||+|..+. +++|++.+|+..|..+-   .+++|..
T Consensus       546 f~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~  581 (599)
T PLN02952        546 IEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD  581 (599)
T ss_pred             EEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence            99999998877 99999999999998774   3667753

>PLN02952 phosphoinositide phospholipase C

Probab=99.12  E-value=3.5e-10  Score=113.57  Aligned_cols=110  Identities=24%  Similarity=0.222  Sum_probs=86.3

Q ss_pred             ceeEEEEEEeeecCCCCC------CCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEE
Q psy12136        272 KRALIVNLIKCTNLIPMD------SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVI  344 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~------~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i  344 (399)
                      ...|.|.|+.|.+++...      .....||||+|.+.+-... .+++|+++.++.||+|||+|.|.+...++  +.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL--Allrf  546 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL--ALLRI  546 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc--cEEEE
Confidence            357999999998875321      1233599999998753322 67899999999999999999999886665  48999


Q ss_pred             EEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCC
Q psy12136        345 TVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH  384 (399)
Q Consensus       345 ~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~  384 (399)
                      .|||+|..+.++++|++.|++++...++. |..|+..-+.
T Consensus       547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~GyR-~VpL~~~~G~  585 (599)
T PLN02952        547 EVREYDMSEKDDFGGQTCLPVSELRPGIR-SVPLHDKKGE  585 (599)
T ss_pred             EEEecCCCCCCCeEEEEEcchhHhcCCce-eEeCcCCCCC
Confidence            99999988889999999999998776664 5566544443

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.11  E-value=3e-10  Score=113.89  Aligned_cols=109  Identities=21%  Similarity=0.279  Sum_probs=86.1

Q ss_pred             ceeEEEEEEeeecCCCC------CCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEE
Q psy12136        272 KRALIVNLIKCTNLIPM------DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVI  344 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~------~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i  344 (399)
                      ...|.|+|+.+.+++..      +.....||||+|.+.+-... .+++|++..++.||+|||+|.|.+..+++  +.|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL--AllRf  545 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL--ALLRV  545 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce--eEEEE
Confidence            35799999999987522      22334799999999753322 56788898899999999999999987766  48999


Q ss_pred             EEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCC
Q psy12136        345 TVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD  383 (399)
Q Consensus       345 ~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~  383 (399)
                      .|+|+|..+.++++|+..|++.+..++++|- .|+..-+
T Consensus       546 ~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V-~L~~~~G  583 (598)
T PLN02230        546 EVHEHDINEKDDFGGQTCLPVSEIRQGIHAV-PLFNRKG  583 (598)
T ss_pred             EEEECCCCCCCCEEEEEEcchHHhhCccceE-eccCCCc
Confidence            9999998889999999999999887777764 3444333

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.10  E-value=3.9e-10  Score=113.06  Aligned_cols=105  Identities=21%  Similarity=0.296  Sum_probs=82.2

Q ss_pred             CCEEEEEEEEecCCCCC------CCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEE
Q psy12136        129 TCSLHVTLHRAKGLRAM------DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLH  202 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~------~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~  202 (399)
                      ...|.|+|+.+.+++..      +....+||||+|.+.+-.....+++|++..++.||+|||+|.|. +...+|  ..|+
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~-l~vPEL--AllR  544 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFP-LAVPEL--ALLR  544 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEE-EEcCce--eEEE
Confidence            36899999999987521      22235799999999653333456789999999999999999994 555555  7899


Q ss_pred             EEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        203 ILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       203 ~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      |.|+|+|.... +|+|+..+|+..|..+-.   .++|.
T Consensus       545 f~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~  579 (598)
T PLN02230        545 VEVHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLF  579 (598)
T ss_pred             EEEEECCCCCCCCEEEEEEcchHHhhCccc---eEecc
Confidence            99999998766 999999999999987643   34554

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.10  E-value=1.4e-10  Score=85.02  Aligned_cols=100  Identities=20%  Similarity=0.300  Sum_probs=81.7

Q ss_pred             EEEEEeeecCCCCCC-CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136        276 IVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS  354 (399)
Q Consensus       276 ~v~v~~a~~L~~~~~-~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~  354 (399)
                      -+++++|++|.-... ...+..||+--+.-. +....||.+++++.||+|+|+|.|.+...++....|.|.|+.  .+.+
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~-kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R   78 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP-KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR   78 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecC-CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence            368899999976544 334566888666531 127899999999999999999999999989998999999998  5568


Q ss_pred             CeeeEEEEEccCCCC-Ccchhhhhh
Q psy12136        355 NDYLGCLELCCNSKG-DRLRHWVDM  378 (399)
Q Consensus       355 d~~lG~~~i~l~~~~-~~~~~w~~l  378 (399)
                      ++.||.+.+++++.+ ++..||.++
T Consensus        79 Ke~iG~~sL~l~s~geeE~~HW~e~  103 (103)
T cd08684          79 KRTIGECSLSLRTLSTQETDHWLEI  103 (103)
T ss_pred             cceeeEEEeecccCCHHHhhhhhcC
Confidence            899999999999865 789999764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PLN02270 phospholipase D alpha

Probab=99.09  E-value=8.9e-10  Score=112.80  Aligned_cols=124  Identities=20%  Similarity=0.304  Sum_probs=97.9

Q ss_pred             CCEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEEecCCCCCceEecccccCC-CCCeecceEEec
Q psy12136        129 TCSLHVTLHRAKGLRAMD------------------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRT-INPEFHEKLTFY  189 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~------------------~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t-~nP~wne~f~f~  189 (399)
                      ++.|.|+|++|++|+..+                  ..+.+||||.|.+.    +....||+++.+. .||+|||.|.++
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~a~v~rtr~~~~~~~~p~w~e~f~i~   82 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE----KARVGRTRKIENEPKNPRWYESFHIY   82 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC----CcEEEEEeecCCCCCCCccccceEEe
Confidence            578999999999998531                  12567999999996    4678899999885 599999999884


Q ss_pred             eeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        190 SVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       190 ~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                       +...   ...+.|.|.|.+.++..+||.+.||..++..+...+.|+++......+          ......|++++.|.
T Consensus        83 -~ah~---~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p----------~~~~~~~~~~~~f~  148 (808)
T PLN02270         83 -CAHM---ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNP----------IHGGSKIHVKLQYF  148 (808)
T ss_pred             -eccC---cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCc----------CCCCCEEEEEEEEE
Confidence             4333   378999999999999999999999999999988888888886532211          12334788888886


Q ss_pred             c
Q psy12136        270 T  270 (399)
Q Consensus       270 ~  270 (399)
                      +
T Consensus       149 ~  149 (808)
T PLN02270        149 E  149 (808)
T ss_pred             E
Confidence            5

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.08  E-value=7e-10  Score=111.08  Aligned_cols=102  Identities=19%  Similarity=0.164  Sum_probs=82.5

Q ss_pred             ceeEEEEEEeeecCCC--C----CCCCCCCcEEEEEEecCCC-CceEeecceeCCCCceecceEEEEeccCcccccEEEE
Q psy12136        272 KRALIVNLIKCTNLIP--M----DSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVI  344 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~--~----~~~g~~dpyV~v~l~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i  344 (399)
                      ...|.|+|+.+.+++.  .    +.....||||+|.+.+-.. ..+++|+++.++.||+|||+|.|.+..+++  +-|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL--AllRf  528 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL--ALLRL  528 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce--eEEEE
Confidence            3578999999987531  1    1234579999999975332 267889999999999999999999887666  58999


Q ss_pred             EEEeCCCCCCCeeeEEEEEccCCCCCcchhh
Q psy12136        345 TVWDKDYGKSNDYLGCLELCCNSKGDRLRHW  375 (399)
Q Consensus       345 ~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w  375 (399)
                      .|+|+|..+.+++||+..|+++...++++|-
T Consensus       529 ~V~d~D~~~~ddfigq~~lPv~~Lr~GyR~V  559 (581)
T PLN02222        529 EVHEYDMSEKDDFGGQTCLPVWELSQGIRAF  559 (581)
T ss_pred             EEEECCCCCCCcEEEEEEcchhhhhCccceE
Confidence            9999998888999999999999988777764

>KOG1031|consensus

Probab=99.07  E-value=3.3e-10  Score=109.43  Aligned_cols=116  Identities=23%  Similarity=0.310  Sum_probs=93.5

Q ss_pred             eeEEEEEEeeecCCCCCC-CCCCCcEEEEEEecCCCCceEeecceeCCCCceec-ceEEEEeccCcccccEEEEEEEeCC
Q psy12136        273 RALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~-~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      +.|-|.|..||+||.||. ....|.||+|.+..    ..+||.|..+++||.|| +-|.|.|...++.+..|+|+++|+|
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n----~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d   78 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN----TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD   78 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecc----cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence            578899999999999987 45689999999954    88999999999999999 6899999988999999999999999


Q ss_pred             CCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        351 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      ..+.++-||.+.|+++...  ++.--+...-.+..+..|.++.+
T Consensus        79 tysandaigkv~i~idpl~--~e~aaqavhgkgtvisgw~pifd  120 (1169)
T KOG1031|consen   79 TYSANDAIGKVNIDIDPLC--LEEAAQAVHGKGTVISGWFPIFD  120 (1169)
T ss_pred             ccccccccceeeeccChHH--HHhHHhhhcCCceEEeeeeecce
Confidence            9999999999999988421  11111223334555666666543

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.05  E-value=1e-09  Score=109.88  Aligned_cols=105  Identities=22%  Similarity=0.284  Sum_probs=81.5

Q ss_pred             CEEEEEEEEecCCC--CC----CCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEE
Q psy12136        130 CSLHVTLHRAKGLR--AM----DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI  203 (399)
Q Consensus       130 ~~L~V~V~~a~~L~--~~----~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~  203 (399)
                      ..|.|+|+.+.+++  ..    +....+||||+|.+.+......++||+++.++.||+|||+|.|. +...++  ..|+|
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~-i~~PeL--AllRf  528 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFP-LTVPEL--ALLRL  528 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEE-EEcCce--eEEEE
Confidence            57999999998753  11    12246799999999653333467899999999999999999994 655555  78999


Q ss_pred             EEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        204 LVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       204 ~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      .|+|+|..+. +|+|++.+|+..|..+=.   .++|..
T Consensus       529 ~V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~  563 (581)
T PLN02222        529 EVHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS  563 (581)
T ss_pred             EEEECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence            9999998776 999999999999987632   345543

>PLN02228 Phosphoinositide phospholipase C

Probab=99.04  E-value=2.9e-09  Score=106.39  Aligned_cols=104  Identities=22%  Similarity=0.377  Sum_probs=81.0

Q ss_pred             CEEEEEEEEecCCCC---CC---CCCCCCcEEEEEEecCCCCCceEecccccCCCCCee-cceEEeceeCcccCCCceEE
Q psy12136        130 CSLHVTLHRAKGLRA---MD---IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSLH  202 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~---~~---~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~w-ne~f~f~~v~~~~l~~~~L~  202 (399)
                      ..|.|+|+.|++|+.   .+   .....||||+|.+.+......++||+++.++.||+| ||+|.|. +...++  ..|+
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~-~~~pEL--A~lR  507 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQ-LRVPEL--ALLW  507 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEE-EEcCce--eEEE
Confidence            479999999998732   11   123489999999975333456789999988899999 9999994 555555  6899


Q ss_pred             EEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        203 ILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       203 ~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      |.|+|+|..+. +|+|++.+|+..|..+-   ..++|.
T Consensus       508 f~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~  542 (567)
T PLN02228        508 FKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLH  542 (567)
T ss_pred             EEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEcc
Confidence            99999997766 99999999999997653   234564

>KOG0169|consensus

Probab=99.03  E-value=5.4e-10  Score=112.12  Aligned_cols=100  Identities=27%  Similarity=0.378  Sum_probs=84.1

Q ss_pred             eEEEEEEeeecCCCCCC----CCCCCcEEEEEEecCCCC-ceEeec-ceeCCCCceecceEEEEeccCcccccEEEEEEE
Q psy12136        274 ALIVNLIKCTNLIPMDS----NGFSDPFIKLYLKPDLHK-RKYKTG-VKWKTLNPIFNEEFAIETKITELSKQTLVITVW  347 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~----~g~~dpyV~v~l~~~~~~-~~~kT~-v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~  347 (399)
                      .|.|.|+.+.++++...    +..+||||.|.+.+-... .+.+|+ +..++.||.|+|+|+|.+..+++  +-|.|.|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL--AliRF~V~  694 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL--ALIRFEVH  694 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce--eEEEEEEE
Confidence            69999999997655432    345899999998754433 788999 56677999999999999987777  49999999


Q ss_pred             eCCCCCCCeeeEEEEEccCCCCCcchhh
Q psy12136        348 DKDYGKSNDYLGCLELCCNSKGDRLRHW  375 (399)
Q Consensus       348 d~~~~~~d~~lG~~~i~l~~~~~~~~~w  375 (399)
                      |+|..++|+|+|+.+|++++..++++|-
T Consensus       695 d~d~~~~ddF~GQ~tlP~~~L~~GyRhV  722 (746)
T KOG0169|consen  695 DYDYIGKDDFIGQTTLPVSELRQGYRHV  722 (746)
T ss_pred             ecCCCCcccccceeeccHHHhhCceeee
Confidence            9999999999999999999988888875

>PLN02228 Phosphoinositide phospholipase C

Probab=98.99  E-value=2.2e-09  Score=107.26  Aligned_cols=111  Identities=22%  Similarity=0.244  Sum_probs=87.3

Q ss_pred             ceeEEEEEEeeecCCC---CC---CCCCCCcEEEEEEecCCCC-ceEeecceeCCCCcee-cceEEEEeccCcccccEEE
Q psy12136        272 KRALIVNLIKCTNLIP---MD---SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLV  343 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~---~~---~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~w-ne~f~f~v~~~~l~~~~l~  343 (399)
                      ...|.|+|+.|.+|+.   .+   .....||||+|.+.+.... .+++|+++.++.||+| ||+|.|.+...++  +-|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL--A~lR  507 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL--ALLW  507 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce--eEEE
Confidence            3479999999998732   11   2234799999998754322 6789999988899999 9999999987666  4899


Q ss_pred             EEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCc
Q psy12136        344 ITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK  385 (399)
Q Consensus       344 i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~  385 (399)
                      |.|+|++..+.+++||+..|+++...++++|- .|+...+..
T Consensus       508 f~V~D~d~~~~d~figq~~lPv~~Lr~GYR~V-pL~~~~G~~  548 (567)
T PLN02228        508 FKVQDYDNDTQNDFAGQTCLPLPELKSGVRAV-RLHDRAGKA  548 (567)
T ss_pred             EEEEeCCCCCCCCEEEEEEcchhHhhCCeeEE-EccCCCCCC
Confidence            99999998888999999999999988777765 455554443

>KOG0169|consensus

Probab=98.97  E-value=3.6e-09  Score=106.28  Aligned_cols=98  Identities=23%  Similarity=0.381  Sum_probs=80.6

Q ss_pred             EEEEEEEEecCCCCC-CC---CCCCCcEEEEEEecCCCCCceEecc-cccCCCCCeecceEEeceeCcccCCCceEEEEE
Q psy12136        131 SLHVTLHRAKGLRAM-DI---HGTSDPFCKLNLVPLTKTSHRLRTK-TCLRTINPEFHEKLTFYSVSETDLSLQSLHILV  205 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~-~~---~~~~dpyv~v~l~~~~~~~~~~rT~-~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V  205 (399)
                      .|.|.|+.+.++++. ..   ...+||||.|.+.+-.....+++|+ +..++-||.|+|+|.| .++..+|  ..|+|.|
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F-~l~vPEL--AliRF~V  693 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEF-QLSVPEL--ALIRFEV  693 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEE-EEeccce--eEEEEEE
Confidence            699999999966543 22   2468999999986533345688999 5677899999999999 5777776  7899999


Q ss_pred             EEcCCCCC-cceeeEEecCcccCCCcc
Q psy12136        206 LDDDKYGH-DFLGEARFPLNRLRPHIS  231 (399)
Q Consensus       206 ~d~~~~~~-~~lG~~~i~l~~l~~~~~  231 (399)
                      +|+|..++ +|+|+..+|+..|..+-.
T Consensus       694 ~d~d~~~~ddF~GQ~tlP~~~L~~GyR  720 (746)
T KOG0169|consen  694 HDYDYIGKDDFIGQTTLPVSELRQGYR  720 (746)
T ss_pred             EecCCCCcccccceeeccHHHhhCcee
Confidence            99999997 999999999999987643

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.94  E-value=3.2e-09  Score=81.63  Aligned_cols=85  Identities=16%  Similarity=0.283  Sum_probs=68.4

Q ss_pred             EEEEEEEecCCCCCC---CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        132 LHVTLHRAKGLRAMD---IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       132 L~V~V~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      |.|+|..|||+...+   ..+.+||||.+.+.    ...+.||++   +.||.|||+|.| .|..    ...+.|.|||.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve----d~~kaRTr~---srnd~WnE~F~i-~Vdk----~nEiel~VyDk   68 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVE----DVERARTKP---SRNDRWNEDFEI-PVEK----NNEEEVIVYDK   68 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEEC----CEEEEeccC---CCCCcccceEEE-EecC----CcEEEEEEEeC
Confidence            679999999998877   46789999999996    345788877   589999999999 4632    47899999998


Q ss_pred             CCCCCcceeeEEecCcccCC
Q psy12136        209 DKYGHDFLGEARFPLNRLRP  228 (399)
Q Consensus       209 ~~~~~~~lG~~~i~l~~l~~  228 (399)
                      .......||..-+.++++..
T Consensus        69 ~~~~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          69 GGDQPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             CCCeecceeeehhhHHHHHH
Confidence            65433778998888888764

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1264|consensus

Probab=98.90  E-value=5.9e-09  Score=104.37  Aligned_cols=105  Identities=21%  Similarity=0.426  Sum_probs=82.2

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-CceEecccccCCCCCeec-ceEEeceeCcccCCCceEEEEEEEc
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT-SHRLRTKTCLRTINPEFH-EKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~-~~~~rT~~~~~t~nP~wn-e~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      +|.|.|+.||.|+... .+.+.|||.|.+.+-.-. ...++|.++.+++||+|| |.|.| .|...++  ..|+|.|++.
T Consensus      1066 ~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftF-eI~nPe~--A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTF-EIYNPEF--AFLRFVVYEE 1141 (1267)
T ss_pred             EEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEE-EeeCCce--EEEEEEEecc
Confidence            6889999999999543 455779999999752222 345556678899999999 99999 5665554  7899999999


Q ss_pred             CCCCC-cceeeEEecCcccCCCcceeEEEeecccC
Q psy12136        209 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHY  242 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  242 (399)
                      |.+++ .|||++.+|+..+..+=   ..++|.+.|
T Consensus      1142 Dmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~y 1173 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGY 1173 (1267)
T ss_pred             cccCCcceeeeeecchhhhhccc---eeeecccCc
Confidence            99999 99999999999987652   345565543

>KOG1031|consensus

Probab=98.87  E-value=7.1e-09  Score=100.37  Aligned_cols=94  Identities=27%  Similarity=0.518  Sum_probs=84.5

Q ss_pred             CEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeec-ceEEeceeCcccCCCceEEEEEEE
Q psy12136        130 CSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH-EKLTFYSVSETDLSLQSLHILVLD  207 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wn-e~f~f~~v~~~~l~~~~L~~~V~d  207 (399)
                      ++|-|+|..||+|+-+|.. ...|.||.+.+.     ...+||.+..+++||.|| +-|.| .|...++++..|++.+.|
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~-----n~t~ktdvf~kslnp~wnsdwfkf-evddadlqdeplqi~lld   76 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA-----NTTFKTDVFLKSLNPQWNSDWFKF-EVDDADLQDEPLQIRLLD   76 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEec-----ccceehhhhhhhcCCcccccceEE-ecChhhhccCCeeEEEec
Confidence            5788999999999999875 568999999994     578999999999999999 56778 799999999999999999


Q ss_pred             cCCCCC-cceeeEEecCcccCCC
Q psy12136        208 DDKYGH-DFLGEARFPLNRLRPH  229 (399)
Q Consensus       208 ~~~~~~-~~lG~~~i~l~~l~~~  229 (399)
                      +|..+. +-||.+.|++..|...
T Consensus        77 ~dtysandaigkv~i~idpl~~e   99 (1169)
T KOG1031|consen   77 HDTYSANDAIGKVNIDIDPLCLE   99 (1169)
T ss_pred             ccccccccccceeeeccChHHHH
Confidence            999998 9999999999988743

>PLN02270 phospholipase D alpha

Probab=98.84  E-value=1.2e-08  Score=104.79  Aligned_cols=108  Identities=18%  Similarity=0.248  Sum_probs=87.1

Q ss_pred             ceeEEEEEEeeecCCCCC------------------CCCCCCcEEEEEEecCCCCceEeecceeCC-CCceecceEEEEe
Q psy12136        272 KRALIVNLIKCTNLIPMD------------------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKT-LNPIFNEEFAIET  332 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~------------------~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v  332 (399)
                      -|.|.++|++|++|+.++                  ..+.+||||.|.+.   +....+|+++.+. .||.|||+|...+
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~---~a~v~rtr~~~~~~~~p~w~e~f~i~~   83 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE---KARVGRTRKIENEPKNPRWYESFHIYC   83 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC---CcEEEEEeecCCCCCCCccccceEEee
Confidence            378999999999998531                  13568999999995   2378899999885 5999999999888


Q ss_pred             ccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCC--CCCcchhhhhhhcCCCCce
Q psy12136        333 KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHKH  386 (399)
Q Consensus       333 ~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~--~~~~~~~w~~l~~~p~~~~  386 (399)
                      ...   -..|.|+|.|.+.++ ..+||.+.|++..  .+..++.|++++..-+++.
T Consensus        84 ah~---~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~  135 (808)
T PLN02270         84 AHM---ASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPI  135 (808)
T ss_pred             ccC---cceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcC
Confidence            632   368999999999886 5699999999886  4667888998887766554

>KOG1264|consensus

Probab=98.75  E-value=3.8e-08  Score=98.79  Aligned_cols=93  Identities=22%  Similarity=0.294  Sum_probs=76.1

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC--CceEeecceeCCCCceec-ceEEEEeccCcccccEEEEEEEeC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWDK  349 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~--~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~l~~~~l~i~V~d~  349 (399)
                      -+|.|.|+.||+|+.. ..+...|||+|.+.+..-  ++.++|.|+.+.+||+|| |+|+|.|..+++  +-|.|.|+|.
T Consensus      1065 ~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~--A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF--AFLRFVVYEE 1141 (1267)
T ss_pred             eEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce--EEEEEEEecc
Confidence            5688999999999843 445577999999975332  255566667788999999 999999986655  5899999999


Q ss_pred             CCCCCCeeeEEEEEccCCC
Q psy12136        350 DYGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       350 ~~~~~d~~lG~~~i~l~~~  368 (399)
                      |+++...|||+++.++.++
T Consensus      1142 Dmfs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred             cccCCcceeeeeecchhhh
Confidence            9999888999999998863

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.74  E-value=3.1e-08  Score=76.23  Aligned_cols=84  Identities=15%  Similarity=0.228  Sum_probs=67.2

Q ss_pred             EEEEEEeeecCCCCC---CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        275 LIVNLIKCTNLIPMD---SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       275 L~v~v~~a~~L~~~~---~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      |.|+|..++|+...+   ..+.+||||.+++.+   ..+.+|++   +.||.|||.|.|++.    ....+.|.|||...
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved---~~kaRTr~---srnd~WnE~F~i~Vd----k~nEiel~VyDk~~   70 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVED---VERARTKP---SRNDRWNEDFEIPVE----KNNEEEVIVYDKGG   70 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECC---EEEEeccC---CCCCcccceEEEEec----CCcEEEEEEEeCCC
Confidence            678999999998776   467789999999952   25888886   489999999999994    25789999999864


Q ss_pred             CCCCeeeEEEEEccCCCC
Q psy12136        352 GKSNDYLGCLELCCNSKG  369 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~~~  369 (399)
                      . ..--||...|.++.+-
T Consensus        71 ~-~~~Pi~llW~~~sdi~   87 (109)
T cd08689          71 D-QPVPVGLLWLRLSDIA   87 (109)
T ss_pred             C-eecceeeehhhHHHHH
Confidence            3 3457999888887543

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG2060|consensus

Probab=98.66  E-value=1.3e-07  Score=87.68  Aligned_cols=123  Identities=22%  Similarity=0.339  Sum_probs=91.7

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCC-CCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEecc
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  334 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~-~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~  334 (399)
                      ...|++++.++  ...+.+.|.|++|++|..... ...++|||+|++.+.+.- .+.+|+...+|.+|-|-+...|.-.+
T Consensus       255 P~mg~iq~~~~--d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp  332 (405)
T KOG2060|consen  255 PNMGDIQIALM--DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP  332 (405)
T ss_pred             cccccchhhhh--cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC
Confidence            34555555443  246899999999999976643 336899999999875433 78999999999999998888887653


Q ss_pred             CcccccEEEEEEE-eCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        335 TELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       335 ~~l~~~~l~i~V~-d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                         ....|.++|| |+..+..+.|+|-++|-+.+.+           .-..+...||+|.+.
T Consensus       333 ---~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~-----------ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  333 ---PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELN-----------LSSSPVIGWYKLFGS  380 (405)
T ss_pred             ---CccEEEEEEeccccccchHHHhhHHHHHhhhhc-----------cccccceeeeeccCC
Confidence               3678999999 6667778899999998887643           122245677777653

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.59  E-value=8.2e-08  Score=76.16  Aligned_cols=93  Identities=15%  Similarity=0.262  Sum_probs=69.7

Q ss_pred             EEEEEEeeecCCCCCC-------------CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEecc-------
Q psy12136        275 LIVNLIKCTNLIPMDS-------------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-------  334 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~-------------~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-------  334 (399)
                      |.|.|++|.+|.....             .--.|+||++.+..-.+++.++|+++-++..|.|+..++|.++.       
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            4678888888854310             11169999999765445589999999999999999999999762       


Q ss_pred             ------CcccccEEEEEEEeCCCC----------CCCeeeEEEEEccCC
Q psy12136        335 ------TELSKQTLVITVWDKDYG----------KSNDYLGCLELCCNS  367 (399)
Q Consensus       335 ------~~l~~~~l~i~V~d~~~~----------~~d~~lG~~~i~l~~  367 (399)
                            +-|....|.|+||+....          .+|-.||.+.|++..
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~  129 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRD  129 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHH
Confidence                  224457899999997632          346689999999754

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG2060|consensus

Probab=98.52  E-value=1.1e-07  Score=88.26  Aligned_cols=122  Identities=23%  Similarity=0.321  Sum_probs=98.9

Q ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       113 ~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      ....|.|++.+.-  ..+.|.|.|++|++|..+... ..++|||+|++++.+....+.+|+...+|.+|.|.+...|.  
T Consensus       254 ~P~mg~iq~~~~d--~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~--  329 (405)
T KOG2060|consen  254 APNMGDIQIALMD--SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD--  329 (405)
T ss_pred             Ccccccchhhhhc--ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc--
Confidence            3456777777654  678999999999999877544 36899999999998777788999999999999999988883  


Q ss_pred             CcccCCCceEEEEEE-EcCCCCC-cceeeEEecCcccCCCc-ceeEEEeecc
Q psy12136        192 SETDLSLQSLHILVL-DDDKYGH-DFLGEARFPLNRLRPHI-SRDLCLNLCK  240 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~-d~~~~~~-~~lG~~~i~l~~l~~~~-~~~~~~~L~~  240 (399)
                        +......|++.|| |+.+... .|+|.+.+-+.+|.... ....|+.|..
T Consensus       330 --~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  330 --QSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             --cCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence              3334689999999 5677666 99999999999998776 6667777754

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.51  E-value=1.3e-07  Score=69.70  Aligned_cols=93  Identities=17%  Similarity=0.208  Sum_probs=72.6

Q ss_pred             EEEEEEecCCCCCCCCC-CCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        133 HVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       133 ~V~V~~a~~L~~~~~~~-~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      -++|+.|+||......| .+.-|++=.+.-.  ..-.+||.+.+...||+|+|+|.| .+....+....|.|.|++ .+-
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVF-qi~l~qL~~V~L~fsv~~-~~~   77 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVF-AIKLQNLQTVRLVFKIQT-QTP   77 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHH-HHHHhhccceEEEEEeec-cCC
Confidence            47899999998655443 3455776555311  235789999999999999999999 688899999999999999 232


Q ss_pred             CCcceeeEEecCcccCCC
Q psy12136        212 GHDFLGEARFPLNRLRPH  229 (399)
Q Consensus       212 ~~~~lG~~~i~l~~l~~~  229 (399)
                      +++.||.|.+.|+++-..
T Consensus        78 RKe~iG~~sL~l~s~gee   95 (103)
T cd08684          78 RKRTIGECSLSLRTLSTQ   95 (103)
T ss_pred             ccceeeEEEeecccCCHH
Confidence            339999999999988654

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PLN02352 phospholipase D epsilon

Probab=98.34  E-value=2.9e-06  Score=87.28  Aligned_cols=118  Identities=12%  Similarity=0.122  Sum_probs=82.3

Q ss_pred             CCEEEEEEEEecCCCCCC----C-CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEE
Q psy12136        129 TCSLHVTLHRAKGLRAMD----I-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI  203 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~----~-~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~  203 (399)
                      ++.|.++|++|+-+...-    . ....||||.|.+.    .....||   .+..||+|||.|.++ +...  ....+.|
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~~~v~rt---~~~~~p~w~e~f~i~-~ah~--~~~~~~f   78 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG----NKKVAKT---SHEYDRVWNQTFQIL-CAHP--LDSTITI   78 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeC----CcEEecC---CCCCCCccccceeEE-eeee--cCCcEEE
Confidence            578889999987433221    1 1123999999996    3566777   566699999999884 3332  1257899


Q ss_pred             EEEEcCCCCCcceeeEEecCcccCCCcc-eeEEEeecccCCCCCccccccccccccceeEEEEEeeecc
Q psy12136        204 LVLDDDKYGHDFLGEARFPLNRLRPHIS-RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK  271 (399)
Q Consensus       204 ~V~d~~~~~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~  271 (399)
                      .|.|    +..+||.+.||..++..+.. .+.|+++......+          ... ..|++++.|.|.
T Consensus        79 ~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p----------~~~-~~~~~~~~~~~~  132 (758)
T PLN02352         79 TLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKP----------NPE-LKLRFMLWFRPA  132 (758)
T ss_pred             EEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCC----------CCC-CEEEEEEEEEEh
Confidence            9988    35899999999999988865 78888886532111          111 578888888653

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.05  E-value=5.4e-06  Score=65.94  Aligned_cols=95  Identities=26%  Similarity=0.421  Sum_probs=69.7

Q ss_pred             EEEEEEEecCCCCCC-----------C--CCCCCcEEEEEE--ecCCCCCceEecccccCCCCCeecceEEeceeC----
Q psy12136        132 LHVTLHRAKGLRAMD-----------I--HGTSDPFCKLNL--VPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS----  192 (399)
Q Consensus       132 L~V~V~~a~~L~~~~-----------~--~~~~dpyv~v~l--~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~----  192 (399)
                      |.|.|++|.+|....           .  .=..++||++.+  +|   ....++|+++.++--|.|+-.|+|. .+    
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~---~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~   76 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLP---EKELRRTRTVARSFCPEFNHHVEFP-CNLVVQ   76 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCC---CCceeeccchhhhcCCCccceEEEe-cccEEE
Confidence            468899999886421           1  113689999996  45   3468899999999999999999985 33    


Q ss_pred             ---------cccCCCceEEEEEEEcCCCCC-----------cceeeEEecCcccCCCc
Q psy12136        193 ---------ETDLSLQSLHILVLDDDKYGH-----------DFLGEARFPLNRLRPHI  230 (399)
Q Consensus       193 ---------~~~l~~~~L~~~V~d~~~~~~-----------~~lG~~~i~l~~l~~~~  230 (399)
                               .+-|....+.|+||++...+.           -+||.+.||+.+|....
T Consensus        77 ~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r  134 (143)
T cd08683          77 RNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR  134 (143)
T ss_pred             cCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence                     112345778999999764432           47999999999987543

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02352 phospholipase D epsilon

Probab=98.01  E-value=1.4e-05  Score=82.24  Aligned_cols=101  Identities=14%  Similarity=0.177  Sum_probs=71.1

Q ss_pred             eeEEEEEEeeecCCCC----CC-CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEE
Q psy12136        273 RALIVNLIKCTNLIPM----DS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW  347 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~----~~-~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~  347 (399)
                      |.|.++|++|+-+...    .. ....+|||.|.+..   ....+|   .+..||.|||+|...+..  ..+..|.|+|.
T Consensus        10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~---~~v~rt---~~~~~p~w~e~f~i~~ah--~~~~~~~f~vk   81 (758)
T PLN02352         10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN---KKVAKT---SHEYDRVWNQTFQILCAH--PLDSTITITLK   81 (758)
T ss_pred             cceEEEEEEeeehhhcccccccccCCCCceEEEEeCC---cEEecC---CCCCCCccccceeEEeee--ecCCcEEEEEe
Confidence            6778888888733221    11 11139999999952   266777   556699999999888763  23357999999


Q ss_pred             eCCCCCCCeeeEEEEEccCCC--CCc-chhhhhhhcCCCCce
Q psy12136        348 DKDYGKSNDYLGCLELCCNSK--GDR-LRHWVDMMKYPDHKH  386 (399)
Q Consensus       348 d~~~~~~d~~lG~~~i~l~~~--~~~-~~~w~~l~~~p~~~~  386 (399)
                      |     .-.+||.+.|++...  +.. ++.|++++..-+++.
T Consensus        82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~  118 (758)
T PLN02352         82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN  118 (758)
T ss_pred             c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC
Confidence            8     267999999998763  333 788888887766554

>KOG1327|consensus

Probab=97.93  E-value=4.3e-05  Score=75.25  Aligned_cols=113  Identities=24%  Similarity=0.333  Sum_probs=94.2

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEe-cCCCCCceEecccccCCCCCeecceEEece
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLV-PLTKTSHRLRTKTCLRTINPEFHEKLTFYS  190 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~-~~~~~~~~~rT~~~~~t~nP~wne~f~f~~  190 (399)
                      .....|.|.+.++-..+......-.++|++|..++..+++|||..++-. .++.....++|.++++++||.|-+..    
T Consensus       118 ~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~----  193 (529)
T KOG1327|consen  118 KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS----  193 (529)
T ss_pred             ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc----
Confidence            4557799999999988888888888899999999999999999999865 35566778999999999999998732    


Q ss_pred             eCcccCC----CceEEEEEEEcCCCCC-cceeeEEecCcccCC
Q psy12136        191 VSETDLS----LQSLHILVLDDDKYGH-DFLGEARFPLNRLRP  228 (399)
Q Consensus       191 v~~~~l~----~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~  228 (399)
                      ++...+.    ...+.+.+||++..++ ++||++..++.++..
T Consensus       194 i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  194 ISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             cchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence            2333322    3788999999999999 999999999999874

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.67  E-value=0.0041  Score=59.11  Aligned_cols=218  Identities=15%  Similarity=0.159  Sum_probs=134.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC-----CCceEEEEEE
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL-----SLQSLHILVL  206 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l-----~~~~L~~~V~  206 (399)
                      +.|.|+++++.+...   ...-.|...+.     .....|..+..+..|.||....+ ++....+     ....|++++|
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~n-----g~~l~TDpv~~~~~p~f~teL~W-E~Dr~~l~~~r~~~tPiKl~c~   72 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFN-----GESLETDPVPHTESPQFNTELAW-ECDRKALKQHRLQRTPIKLQCF   72 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeC-----CceeeecCCCCCCCceeecceee-eccHHHHHHhhccCCceEEEEE
Confidence            689999999999873   24567777773     57889999999999999999888 5554433     3477899999


Q ss_pred             EcC-CCCC-cceeeEEecCccc---CCC--cceeEEEeeccc---CC-CCCcc----------cc--------ccccccc
Q psy12136        207 DDD-KYGH-DFLGEARFPLNRL---RPH--ISRDLCLNLCKH---YP-VPREE----------EV--------WGEEECW  257 (399)
Q Consensus       207 d~~-~~~~-~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~---~~-~~~~~----------~~--------~~~~~~~  257 (399)
                      ..+ ..+. +.||.+.++|...   ..+  .....|+.|..-   |. .+++.          ..        .......
T Consensus        73 a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~  152 (340)
T PF12416_consen   73 AVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPP  152 (340)
T ss_pred             EecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCc
Confidence            887 3344 9999999999998   444  344566666432   11 11110          00        0000011


Q ss_pred             cce------------eEEEEEe----e--------eccceeEEEEEEeeecCCCCC----C--CCCCCcEEEEEEecCCC
Q psy12136        258 QHG------------KIFLTLC----F--------STKKRALIVNLIKCTNLIPMD----S--NGFSDPFIKLYLKPDLH  307 (399)
Q Consensus       258 ~~G------------~l~l~l~----~--------~~~~~~L~v~v~~a~~L~~~~----~--~g~~dpyV~v~l~~~~~  307 (399)
                      ..|            .+.+.+.    |        ......|.|++..|.||...-    .  .+...-|....+.+   
T Consensus       153 ~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG---  229 (340)
T PF12416_consen  153 RQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG---  229 (340)
T ss_pred             ccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC---
Confidence            122            1111110    0        011466889999999986652    1  12345566666765   


Q ss_pred             CceEeecceeCCCCceec--ceEEEEeccC--cc----c-ccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136        308 KRKYKTGVKWKTLNPIFN--EEFAIETKIT--EL----S-KQTLVITVWDKDYGKSNDYLGCLELCCNS  367 (399)
Q Consensus       308 ~~~~kT~v~~~t~nP~wn--e~f~f~v~~~--~l----~-~~~l~i~V~d~~~~~~d~~lG~~~i~l~~  367 (399)
                       ....|.......+|.|-  +...|.+...  .+    . ...|.|.++.     .+..||.+.|++..
T Consensus       230 -n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~  292 (340)
T PF12416_consen  230 -NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQP  292 (340)
T ss_pred             -cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhh
Confidence             34666777777888764  3322554321  11    1 2467777775     36689999999875

>PLN02964 phosphatidylserine decarboxylase

Probab=97.54  E-value=0.00014  Score=74.46  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=74.6

Q ss_pred             eccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEe
Q psy12136        269 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD  348 (399)
Q Consensus       269 ~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  348 (399)
                      .+-.|.+.++++.|+    |+.   .|+|..+...   +.+++||.+.++|.||+||+...|.+...++.  ...|.|||
T Consensus        50 ~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~---g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~  117 (644)
T PLN02964         50 EDFSGIALLTLVGAE----MKF---KDKWLACVSF---GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISVFE  117 (644)
T ss_pred             ccccCeEEEEeehhh----hcc---CCcEEEEEEe---cceeeeeccccccCCcccchhhceEeccCCcc--eEEEEEEe
Confidence            344677888888887    332   5888776544   34899999999999999999999998766554  46999999


Q ss_pred             CCCCCCCeeeEEEEEccCCC-CCcchhhh
Q psy12136        349 KDYGKSNDYLGCLELCCNSK-GDRLRHWV  376 (399)
Q Consensus       349 ~~~~~~d~~lG~~~i~l~~~-~~~~~~w~  376 (399)
                      ++.+..++++|.+.+++... ..+.+.+.
T Consensus       118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elk  146 (644)
T PLN02964        118 TNRLSKNTLVGYCELDLFDFVTQEPESAC  146 (644)
T ss_pred             cCCCCHHHhhhheeecHhhccHHHHHHHH
Confidence            99999999999999988753 33444443

>PLN02964 phosphatidylserine decarboxylase

Probab=97.54  E-value=0.00017  Score=73.83  Aligned_cols=89  Identities=16%  Similarity=0.243  Sum_probs=70.1

Q ss_pred             eCCCCEEEEEEEEecCCCCCCCCCCCCcEE-EEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEE
Q psy12136        126 DSTTCSLHVTLHRAKGLRAMDIHGTSDPFC-KLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHIL  204 (399)
Q Consensus       126 ~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv-~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~  204 (399)
                      +.-.+...+++++|+    ++.   .|+|. .+.+     +.+.+||.+.++|.||+||+.-.| .|.+.++  ...+|.
T Consensus        50 ~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~-----g~~~f~t~~~~~~~~p~~~~~~~~-~~~~~~~--~~~~~~  114 (644)
T PLN02964         50 EDFSGIALLTLVGAE----MKF---KDKWLACVSF-----GEQTFRTETSDSTDKPVWNSEKKL-LLEKNGP--HLARIS  114 (644)
T ss_pred             ccccCeEEEEeehhh----hcc---CCcEEEEEEe-----cceeeeeccccccCCcccchhhce-EeccCCc--ceEEEE
Confidence            334577888889987    332   47664 4555     468999999999999999998888 5776665  446999


Q ss_pred             EEEcCCCCC-cceeeEEecCcccCCC
Q psy12136        205 VLDDDKYGH-DFLGEARFPLNRLRPH  229 (399)
Q Consensus       205 V~d~~~~~~-~~lG~~~i~l~~l~~~  229 (399)
                      |||++.++. +++|.|.++|.++...
T Consensus       115 ~~~~~~~s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        115 VFETNRLSKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             EEecCCCCHHHhhhheeecHhhccHH
Confidence            999999998 9999999988777644

>KOG1265|consensus

Probab=97.36  E-value=0.00031  Score=72.10  Aligned_cols=90  Identities=24%  Similarity=0.469  Sum_probs=71.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEE--ecCCCCCceEeccccc-CCCCCeecc-eEEeceeCcccCCCceEEEEEE
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNL--VPLTKTSHRLRTKTCL-RTINPEFHE-KLTFYSVSETDLSLQSLHILVL  206 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~~~~~~~rT~~~~-~t~nP~wne-~f~f~~v~~~~l~~~~L~~~V~  206 (399)
                      .+.|+||++.=|..+.    ...||.|.+  +|.......+||+++. ++.||+|+| .|.|..|-..++  ..|+|.||
T Consensus       704 t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRiavy  777 (1189)
T KOG1265|consen  704 TLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIAVY  777 (1189)
T ss_pred             eEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeeeee
Confidence            7899999999998776    458999998  3443334677888755 579999995 588876666665  78999999


Q ss_pred             EcCCCCCcceeeEEecCcccCCC
Q psy12136        207 DDDKYGHDFLGEARFPLNRLRPH  229 (399)
Q Consensus       207 d~~~~~~~~lG~~~i~l~~l~~~  229 (399)
                      +.+.   .+||+-.+|+..|..+
T Consensus       778 eEgg---K~ig~RIlpvd~l~~G  797 (1189)
T KOG1265|consen  778 EEGG---KFIGQRILPVDGLNAG  797 (1189)
T ss_pred             ccCC---ceeeeeccchhcccCc
Confidence            8765   7999999999999865

>KOG3837|consensus

Probab=97.30  E-value=0.00011  Score=69.37  Aligned_cols=131  Identities=15%  Similarity=0.159  Sum_probs=92.6

Q ss_pred             EEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc---------
Q psy12136        124 TYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET---------  194 (399)
Q Consensus       124 ~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~---------  194 (399)
                      .-+-....|.+.|+++++++........|-||++.+.-.....++.+|.+++.|.+|.|+|.|.. .+...         
T Consensus       361 f~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkl-ni~rg~~~nr~fqR  439 (523)
T KOG3837|consen  361 FEDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKL-NIRRGPGLNREFQR  439 (523)
T ss_pred             ccccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceee-eccCCCcccHHHHH
Confidence            33345577888999999887655444578899998732222357889999999999999999988 35431         


Q ss_pred             cCCCceEEEEEEEcCCCCC--cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        195 DLSLQSLHILVLDDDKYGH--DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       195 ~l~~~~L~~~V~d~~~~~~--~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      -+....+.|++|+.+.+-+  .++|.+.+.|.-|.........++|.+.             .....|.|.+.++.
T Consensus       440 ~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------------RK~vGGkLevKvRi  502 (523)
T KOG3837|consen  440 RFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------------RKAVGGKLEVKVRI  502 (523)
T ss_pred             HHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------------ccccCCeeEEEEEE
Confidence            1223678999999998844  8999999999888766555555555431             12466777766654

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.28  E-value=0.0018  Score=55.82  Aligned_cols=93  Identities=13%  Similarity=0.173  Sum_probs=67.9

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDK  349 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~  349 (399)
                      ..+.|+|+.+.+|..  .....+.||++.+..++..  ....|+.+....++.|||.+.|+|...+|. +..|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            468899999999975  2344788999887654322  344565555556799999999998776665 46799999987


Q ss_pred             CCCC----------------CCeeeEEEEEccCC
Q psy12136        350 DYGK----------------SNDYLGCLELCCNS  367 (399)
Q Consensus       350 ~~~~----------------~d~~lG~~~i~l~~  367 (399)
                      ....                ....||.+.+.|-+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEc
Confidence            5322                24689999999764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.25  E-value=0.006  Score=51.01  Aligned_cols=131  Identities=18%  Similarity=0.268  Sum_probs=91.2

Q ss_pred             CCCCEEEEEEEEecCCCCCCCC--CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCC-------
Q psy12136        127 STTCSLHVTLHRAKGLRAMDIH--GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-------  197 (399)
Q Consensus       127 ~~~~~L~V~V~~a~~L~~~~~~--~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-------  197 (399)
                      +....|.++|+.++-....-..  +..+..+.+++.-   ..++++|+.+..+++|.|+|.|.| .+..+...       
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f---~~QRF~S~~Vp~~~eP~f~e~Flf-~l~~~~~~~~~~~~~   81 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF---RGQRFRSKPVPCACEPDFNEEFLF-ELPRDSFGAGSTATT   81 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe---cCceEecCCcccccCCCCCCcEEE-EecccccccccchhH
Confidence            3456789999998865433221  4556666666632   468999999999999999999999 56655311       


Q ss_pred             ----CceEEEEEEEcCCCCC-cceeeEEecCcccCCCcce--eEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        198 ----LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR--DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       198 ----~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                          ...|++.|...+..+. .++|.-.+.-..+......  ...+.|..-   .       ....-..|-|.+++...|
T Consensus        82 lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~---~-------~e~kv~~GiL~l~lELlP  151 (156)
T PF15627_consen   82 LLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV---G-------PESKVPVGILDLRLELLP  151 (156)
T ss_pred             hhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc---C-------CCCccceeEEEEEEEeec
Confidence                2568888988888887 9999999988887766554  444444321   1       111246788888887776


Q ss_pred             c
Q psy12136        271 K  271 (399)
Q Consensus       271 ~  271 (399)
                      .
T Consensus       152 ~  152 (156)
T PF15627_consen  152 N  152 (156)
T ss_pred             C
Confidence            4

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.14  E-value=0.0035  Score=53.05  Aligned_cols=91  Identities=13%  Similarity=0.076  Sum_probs=65.3

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDK  349 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~  349 (399)
                      ..+.|.|+.+.++...   ..++-||++.+..++..  ....|..+.. .++.|||.++|+|...++. ++.|.|+||+.
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            4678999999998753   34789999988754322  2334443333 6799999999998776665 46899999997


Q ss_pred             CCCC----CCeeeEEEEEccCC
Q psy12136        350 DYGK----SNDYLGCLELCCNS  367 (399)
Q Consensus       350 ~~~~----~d~~lG~~~i~l~~  367 (399)
                      ...+    ....||.+.+.|-+
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEEC
Confidence            6421    23579999999765

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.06  E-value=0.0039  Score=52.91  Aligned_cols=94  Identities=13%  Similarity=0.095  Sum_probs=66.3

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDK  349 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~  349 (399)
                      ..+.|.+....++... .....+-||++.+..++..  ....|.......++.|||.+.|++...++. +..|.|+||+.
T Consensus         8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            4567778787777541 2334778899887754321  344555444446799999999998766655 56899999998


Q ss_pred             CCCC--CCeeeEEEEEccCC
Q psy12136        350 DYGK--SNDYLGCLELCCNS  367 (399)
Q Consensus       350 ~~~~--~d~~lG~~~i~l~~  367 (399)
                      ...+  .+..||.+.+.|-+
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd  106 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFD  106 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEc
Confidence            7543  46799999999765

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1265|consensus

Probab=96.99  E-value=0.0015  Score=67.34  Aligned_cols=94  Identities=19%  Similarity=0.351  Sum_probs=72.8

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC---CceEeeccee-CCCCceecc-eEEEE-eccCcccccEEEEE
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---KRKYKTGVKW-KTLNPIFNE-EFAIE-TKITELSKQTLVIT  345 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~---~~~~kT~v~~-~t~nP~wne-~f~f~-v~~~~l~~~~l~i~  345 (399)
                      ++.+.|+|+.+.=|..++    ...||+|.+.+-..   ++.++|+++. ++.||+|+| .|.|. |..+++  +.|.|.
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRia  775 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIA  775 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeee
Confidence            478899999999886554    34899999874222   2678888865 568999995 68887 555565  589999


Q ss_pred             EEeCCCCCCCeeeEEEEEccCCCCCcchhh
Q psy12136        346 VWDKDYGKSNDYLGCLELCCNSKGDRLRHW  375 (399)
Q Consensus       346 V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w  375 (399)
                      ||+..    ..+||+=.++++....++.|-
T Consensus       776 vyeEg----gK~ig~RIlpvd~l~~GYrhv  801 (1189)
T KOG1265|consen  776 VYEEG----GKFIGQRILPVDGLNAGYRHV  801 (1189)
T ss_pred             eeccC----CceeeeeccchhcccCcceeE
Confidence            99863    569999999999888777774

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.96  E-value=0.0034  Score=53.25  Aligned_cols=76  Identities=22%  Similarity=0.180  Sum_probs=57.3

Q ss_pred             CCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136        292 GFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSNDYLGCLELCCNS  367 (399)
Q Consensus       292 g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~d~~lG~~~i~l~~  367 (399)
                      ..++-||++.+..++..  ....|..+.-+..+.|||.+.|+|...++. ++.|.|+||+....+....||.+.+.|-.
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            34788999988754322  234555555556788999999998877766 46899999998765567799999999765

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.90  E-value=0.02  Score=49.38  Aligned_cols=95  Identities=17%  Similarity=0.206  Sum_probs=66.5

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-CceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEE
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT-SHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL  206 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~-~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~  206 (399)
                      ...++|+|+.+.+|..  .....+-||++.|-.++.. .....|+.+.....+.|||.+.| .+...+|. ...|.|.||
T Consensus         7 ~~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F-~I~i~dLPr~ArLciti~   83 (173)
T cd08693           7 EEKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEF-DINVCDLPRMARLCFAIY   83 (173)
T ss_pred             CCCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEc-ccchhcCChhHeEEEEEE
Confidence            3579999999999986  2234677888877543321 23445666655677999999999 47766664 478999999


Q ss_pred             EcCCC----------------CC-cceeeEEecCccc
Q psy12136        207 DDDKY----------------GH-DFLGEARFPLNRL  226 (399)
Q Consensus       207 d~~~~----------------~~-~~lG~~~i~l~~l  226 (399)
                      +....                +. ..||.+.++|-+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             EecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            86532                12 5788888887664

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>KOG3837|consensus

Probab=96.80  E-value=0.00075  Score=63.89  Aligned_cols=96  Identities=17%  Similarity=0.256  Sum_probs=75.2

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCC-CCceEeecceeCCCCceecceEEEEeccCc---------ccccE
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HKRKYKTGVKWKTLNPIFNEEFAIETKITE---------LSKQT  341 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~-~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---------l~~~~  341 (399)
                      ...|.+.|+++.+++......-.|.||++++.-.. ...+.+|.+++.|.+|.|+|.|...+....         .....
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            45688899999988775544457889999976433 348899999999999999999999987521         11356


Q ss_pred             EEEEEEeCC-CCCCCeeeEEEEEccCC
Q psy12136        342 LVITVWDKD-YGKSNDYLGCLELCCNS  367 (399)
Q Consensus       342 l~i~V~d~~-~~~~d~~lG~~~i~l~~  367 (399)
                      ++|+||++. .+.+|.++|.+.|.+.-
T Consensus       446 ~kfeifhkggf~rSdkl~gt~nikle~  472 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGNIKLEI  472 (523)
T ss_pred             eeEEEeeccccccccceeceeeeeehh
Confidence            999999987 46778999999999763

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.77  E-value=0.0086  Score=50.69  Aligned_cols=94  Identities=14%  Similarity=0.131  Sum_probs=66.3

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-ceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEE
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS-HRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL  206 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~-~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~  206 (399)
                      ...++|+|+.|.++.-.+   ..|-||++.+-.++... ....|+.+.. .++.|||...| .|...++. ...|.|+||
T Consensus         7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~f-pI~i~dLPr~ArL~iti~   81 (158)
T cd08398           7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDY-DIYIPDLPRSARLCLSIC   81 (158)
T ss_pred             CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEc-ccchhcCChhheEEEEEE
Confidence            457999999999988643   36899999886533211 2334544443 67999999999 47766664 478999999


Q ss_pred             EcCCC----CC-cceeeEEecCcccC
Q psy12136        207 DDDKY----GH-DFLGEARFPLNRLR  227 (399)
Q Consensus       207 d~~~~----~~-~~lG~~~i~l~~l~  227 (399)
                      +....    .. ..+|.+.++|-+..
T Consensus        82 ~~~~~~~~k~~~~~iG~~ni~LFd~~  107 (158)
T cd08398          82 SVKGRKGAKEEHCPLAWGNINLFDYT  107 (158)
T ss_pred             EEecccCCCCceEEEEEEEEEEECCC
Confidence            86542    12 56999999887743

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.73  E-value=0.0071  Score=52.12  Aligned_cols=95  Identities=16%  Similarity=0.140  Sum_probs=68.4

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeeccee----CCCCceecceEEEEeccCccc-ccEEEEE
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKW----KTLNPIFNEEFAIETKITELS-KQTLVIT  345 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~----~t~nP~wne~f~f~v~~~~l~-~~~l~i~  345 (399)
                      ..+.|+|..+.+++........+-||++.+..+++.  ....|+...    -...+.|||.+.|++...++. +..|.|+
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            567889999999987765556889999988754322  233444321    123577999999998766655 5689999


Q ss_pred             EEeCCCCC---------CCeeeEEEEEccCC
Q psy12136        346 VWDKDYGK---------SNDYLGCLELCCNS  367 (399)
Q Consensus       346 V~d~~~~~---------~d~~lG~~~i~l~~  367 (399)
                      ||+....+         .+..||.+.+.|-+
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEc
Confidence            99976543         35799999999765

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.72  E-value=0.011  Score=56.32  Aligned_cols=87  Identities=16%  Similarity=0.214  Sum_probs=69.8

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCc-----ccccEEEEEEEeC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE-----LSKQTLVITVWDK  349 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-----l~~~~l~i~V~d~  349 (399)
                      +.|.|++|+|++...   .-...|..++.    +....|..+..+..|.||....+.+....     +....|++++|-.
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~n----g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~   74 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFN----GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV   74 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeC----CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence            678999999998652   24567778884    37889999999999999999999875432     3356799999988


Q ss_pred             C-CCCCCeeeEEEEEccCCC
Q psy12136        350 D-YGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       350 ~-~~~~d~~lG~~~i~l~~~  368 (399)
                      + ..+..+.||.+.++|.+.
T Consensus        75 ~~~~~~re~iGyv~LdLRsa   94 (340)
T PF12416_consen   75 DGSTGKRESIGYVVLDLRSA   94 (340)
T ss_pred             cCCCCcceeccEEEEEcccc
Confidence            8 567788999999999864

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.67  E-value=0.043  Score=46.45  Aligned_cols=97  Identities=19%  Similarity=0.224  Sum_probs=66.7

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEE
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL  206 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~  206 (399)
                      ...++|+|..+.++...+ ....+-||.+.+-.++. ......|.......++.|||...|+ +...+|. ...|.|+||
T Consensus         7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~   84 (156)
T cd08380           7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIY   84 (156)
T ss_pred             CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEE
Confidence            346788888888877621 23467888888754332 2233444444444789999999994 5555554 478999999


Q ss_pred             EcCCCC--C-cceeeEEecCcccC
Q psy12136        207 DDDKYG--H-DFLGEARFPLNRLR  227 (399)
Q Consensus       207 d~~~~~--~-~~lG~~~i~l~~l~  227 (399)
                      +....+  . ..||.+.++|-+..
T Consensus        85 ~~~~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          85 AVSEPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             EEecCCCCcceEEEEEeEEeEccc
Confidence            977654  4 78999999998753

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.40  E-value=0.034  Score=46.55  Aligned_cols=103  Identities=17%  Similarity=0.208  Sum_probs=74.6

Q ss_pred             ccceeEEEEEEeeecCCCCCC--CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCccc---------
Q psy12136        270 TKKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS---------  338 (399)
Q Consensus       270 ~~~~~L~v~v~~a~~L~~~~~--~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~---------  338 (399)
                      |...+|++.|..++-....-.  .+..+..+.+++...  .++++|+.+.-+.+|.|+|.|-|.+..+...         
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~--~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll   83 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFR--GQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL   83 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEec--CceEecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence            455788899999885432111  145666777776553  3899999999999999999999998765311         


Q ss_pred             --ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCC
Q psy12136        339 --KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH  384 (399)
Q Consensus       339 --~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~  384 (399)
                        ...|.+.|.-.+..+...++|.-.++          |..++..+..
T Consensus        84 s~~~pihivli~~d~~~~~~Lv~s~~ld----------WR~vL~s~~~  121 (156)
T PF15627_consen   84 SISDPIHIVLIRTDPSGETTLVGSHFLD----------WRKVLCSGNG  121 (156)
T ss_pred             cCCCceEEEEEEecCCCceEeeeeceeh----------HHHHhccCCC
Confidence              25688888887776666888887777          7777777654

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.35  E-value=0.025  Score=48.72  Aligned_cols=94  Identities=15%  Similarity=0.127  Sum_probs=61.2

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKD  350 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~~  350 (399)
                      ..++|+|..+.++ ..+.......||++.+..++.- ....|..+..+.++.|||.+.|+|...++. +..|.|+||+..
T Consensus        10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            3566777777643 2333333567888876653222 233555555566799999999998877766 468999999963


Q ss_pred             CCC----------------CCeeeEEEEEccCC
Q psy12136        351 YGK----------------SNDYLGCLELCCNS  367 (399)
Q Consensus       351 ~~~----------------~d~~lG~~~i~l~~  367 (399)
                      ..+                .+..||-+.+.|-.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEc
Confidence            211                24578888888654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.12  E-value=0.057  Score=46.50  Aligned_cols=97  Identities=16%  Similarity=0.106  Sum_probs=67.3

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-ceEeccccc----CCCCCeecceEEeceeCcccCC-CceEE
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS-HRLRTKTCL----RTINPEFHEKLTFYSVSETDLS-LQSLH  202 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~-~~~rT~~~~----~t~nP~wne~f~f~~v~~~~l~-~~~L~  202 (399)
                      ...+.|+|..+.+++........|-||.+.|-.++... ....|+...    -...+.|||...|+ +...++. ...|.
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL~   85 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRLV   85 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEEE
Confidence            45788999999999987655567899999885433211 223443221    12357799999994 6655554 47899


Q ss_pred             EEEEEcCCCC---------C-cceeeEEecCccc
Q psy12136        203 ILVLDDDKYG---------H-DFLGEARFPLNRL  226 (399)
Q Consensus       203 ~~V~d~~~~~---------~-~~lG~~~i~l~~l  226 (399)
                      |++|+....+         . ..||.+.++|-+.
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            9999866543         3 7899999998774

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.97  E-value=0.2  Score=41.51  Aligned_cols=102  Identities=18%  Similarity=0.255  Sum_probs=64.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccc-cCCCCCeecceEEeceeCc------ccCCCceEEE
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC-LRTINPEFHEKLTFYSVSE------TDLSLQSLHI  203 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~-~~t~nP~wne~f~f~~v~~------~~l~~~~L~~  203 (399)
                      ++.|.|.++.+++...    ...||+.....  .......|... ...-.-.|||.|.+. +..      ..+....+.|
T Consensus         8 ~~~l~i~~l~~~p~~~----~~v~v~wkr~~--~~~~~~~t~~~~~~~~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    8 QFDLTIHELENLPSSN----GKVFVKWKRGD--KSKGSGTTSRANVKNGKVQWNEEFSFP-CTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             EEEEEEEEeECcCCCC----CEEEEEEEECC--CCccceeeeeeeccccEEEEeeEEEEE-EEEEEcCCCCcEeeEEEEE
Confidence            6789999999988721    33444444322  11112333332 234457899999884 331      2256678999


Q ss_pred             EEEEcCCCCC-cceeeEEecCcccCCC--cceeEEEeec
Q psy12136        204 LVLDDDKYGH-DFLGEARFPLNRLRPH--ISRDLCLNLC  239 (399)
Q Consensus       204 ~V~d~~~~~~-~~lG~~~i~l~~l~~~--~~~~~~~~L~  239 (399)
                      .|+.....++ ..+|.+.|+|+++...  ......+.|.
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~  119 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLK  119 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCc
Confidence            9998865555 5999999999998864  3455555554

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.84  E-value=0.086  Score=45.47  Aligned_cols=79  Identities=14%  Similarity=0.038  Sum_probs=53.5

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEEE
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLD  207 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~d  207 (399)
                      ...++|+|+.+.++.. +......-||++.|-.++.-....+|....-+.++.|||.+.| .|...+|. ...|.|.||+
T Consensus         9 ~~~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f-~I~~~dLP~~arLc~ti~~   86 (178)
T cd08399           9 DRKFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEF-DIKIKDLPKGALLNLQIYC   86 (178)
T ss_pred             CCCEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEEC-ccccccCChhhEEEEEEEE
Confidence            4478888998874432 2233345677776654333333446776666778999999999 47766665 4789999999


Q ss_pred             cC
Q psy12136        208 DD  209 (399)
Q Consensus       208 ~~  209 (399)
                      ..
T Consensus        87 ~~   88 (178)
T cd08399          87 GK   88 (178)
T ss_pred             Ee
Confidence            64

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=95.77  E-value=0.053  Score=45.11  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             CcEEEEEEecCCCC-c--eEeecceeCC-CCceecceEEEEeccCccc-ccEEEEEEEeCCCCCCC----eeeEEEEEcc
Q psy12136        295 DPFIKLYLKPDLHK-R--KYKTGVKWKT-LNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSN----DYLGCLELCC  365 (399)
Q Consensus       295 dpyV~v~l~~~~~~-~--~~kT~v~~~t-~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~d----~~lG~~~i~l  365 (399)
                      +-||.+.+..++.. .  ...|.....+ .++.|||.+.|++...++. +..|.|+||..+.....    ..||.+.+.+
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l   82 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL   82 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence            45777777654433 2  3367766666 7999999999998766665 46799999998765544    7999999997


Q ss_pred             CC
Q psy12136        366 NS  367 (399)
Q Consensus       366 ~~  367 (399)
                      -+
T Consensus        83 Fd   84 (142)
T PF00792_consen   83 FD   84 (142)
T ss_dssp             B-
T ss_pred             EC
Confidence            65

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=95.74  E-value=0.058  Score=41.94  Aligned_cols=76  Identities=18%  Similarity=0.206  Sum_probs=51.9

Q ss_pred             EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeCC
Q psy12136        275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKD  350 (399)
Q Consensus       275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~~  350 (399)
                      +.+.+..+.+.........++-||++.+..++..  ....|..+.....+.|||.+.|++...++. ++.|.|+||+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            5566777776655433333589999988754322  234555555556689999999998776665 468999999865

Outlier of C2 family.

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.53  E-value=0.061  Score=45.62  Aligned_cols=77  Identities=21%  Similarity=0.160  Sum_probs=56.7

Q ss_pred             CCCCcEEEEEEecCCC-CCceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEEEcCCCCC-cceeeEEecCcc
Q psy12136        149 GTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGH-DFLGEARFPLNR  225 (399)
Q Consensus       149 ~~~dpyv~v~l~~~~~-~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~d~~~~~~-~~lG~~~i~l~~  225 (399)
                      ..+|-||.+.+-.++. -.....|+.+.-+..+.|||...|+ |...+|. +..|.|+||+....++ ..+|.+.++|-+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            3478888888754332 1223466666666778999999995 7766664 4789999999876666 889999999977


Q ss_pred             c
Q psy12136        226 L  226 (399)
Q Consensus       226 l  226 (399)
                      -
T Consensus       107 ~  107 (159)
T cd08397         107 K  107 (159)
T ss_pred             C
Confidence            5

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.11  E-value=0.47  Score=39.23  Aligned_cols=90  Identities=19%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecce-eCCCCceecceEEEEeccC------cccccEEEEE
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVK-WKTLNPIFNEEFAIETKIT------ELSKQTLVIT  345 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~------~l~~~~l~i~  345 (399)
                      ..+.+.|.+..+++.    ....-||++..+... ....+|... ..+..-.|||.|.+.+...      .+....+.|.
T Consensus         7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~-~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKS-KGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             EEEEEEEEEeECcCC----CCCEEEEEEEECCCC-ccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            567889999999876    223445555443211 013344433 3345578999999986531      2555678999


Q ss_pred             EEeCCCCCCCeeeEEEEEccCC
Q psy12136        346 VWDKDYGKSNDYLGCLELCCNS  367 (399)
Q Consensus       346 V~d~~~~~~d~~lG~~~i~l~~  367 (399)
                      |+.....++...||.+.|+|.+
T Consensus        82 v~~~~~~~~k~~lG~~~inLae  103 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAE  103 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHH
Confidence            9987533333689999999986

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=95.11  E-value=0.39  Score=41.81  Aligned_cols=61  Identities=25%  Similarity=0.356  Sum_probs=39.9

Q ss_pred             ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC---CeeeEEEEEccCCCC
Q psy12136        309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS---NDYLGCLELCCNSKG  369 (399)
Q Consensus       309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~---d~~lG~~~i~l~~~~  369 (399)
                      ..+.|.+...+.+|.|+|+|.+.++.....+..|.|++++.....+   ...+|.+.++|-..+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~g  122 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDNG  122 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-TS
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeCC
Confidence            6778888889999999999999999877777899999999764321   169999999987633

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=95.01  E-value=0.25  Score=42.89  Aligned_cols=58  Identities=12%  Similarity=0.191  Sum_probs=45.6

Q ss_pred             CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCC--C-cceeeEEecCc
Q psy12136        166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--H-DFLGEARFPLN  224 (399)
Q Consensus       166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~--~-~~lG~~~i~l~  224 (399)
                      ...++|.+.....+|.|+|++.+ .++.+.....-|.|++++.....  . ..+|-+.+||-
T Consensus        52 ~se~~S~V~yH~~~P~W~EtiKi-~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          52 CSEYRSFVLYHNNSPRWNETIKL-PIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             cceEEEEEEEcCCCCCCceeEEE-ecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            45678999999999999999999 79999988899999888754332  2 45676666663

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=94.84  E-value=0.31  Score=42.51  Aligned_cols=58  Identities=9%  Similarity=0.116  Sum_probs=45.4

Q ss_pred             CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCC----C-cceeeEEecCc
Q psy12136        166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG----H-DFLGEARFPLN  224 (399)
Q Consensus       166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~----~-~~lG~~~i~l~  224 (399)
                      ....+|.+.....+|.|+|++.+ .++.+.....-|.|++++.....    . ..+|-+.+||-
T Consensus        52 ~se~~S~V~Yh~~~P~W~EtIKl-~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          52 IDEYKSVIYYQVDKPKWFETFKV-AIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             ceeEEEEEEeecCCCCCceeEEE-ecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            45788889889999999999999 79999998899999998854321    1 34666666663

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=94.59  E-value=0.69  Score=40.24  Aligned_cols=59  Identities=14%  Similarity=0.183  Sum_probs=39.0

Q ss_pred             CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCCC----cceeeEEecCcc
Q psy12136        166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH----DFLGEARFPLNR  225 (399)
Q Consensus       166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~----~~lG~~~i~l~~  225 (399)
                      .....|.+..++.+|.|+|+|.+ .++.......-|.|++++......    ..+|-+.+||-+
T Consensus        58 ~~~~~S~v~yh~k~P~f~deiKi-~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   58 VTSYYSSVYYHNKNPQFNDEIKI-QLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             BS-EE----TT-SS-EEEEEEEE-EE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             ceEEEEEEEecCCCCCccEEEEE-EcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            35678888889999999999999 688887778899999998654421    589999999988

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=94.08  E-value=0.39  Score=37.27  Aligned_cols=79  Identities=20%  Similarity=0.150  Sum_probs=53.2

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-ceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEEEc
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS-HRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLDD  208 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~-~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~d~  208 (399)
                      .+.+.+..+.++.........+-||.+.+-.++... ....|..+.-...+.|||...|+ +...++. ...|.|+||+.
T Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~   90 (100)
T smart00142       12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEV   90 (100)
T ss_pred             ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEe
Confidence            366777777777655433335899999886533211 23456555556669999999994 7766654 47899999986


Q ss_pred             CC
Q psy12136        209 DK  210 (399)
Q Consensus       209 ~~  210 (399)
                      ..
T Consensus        91 ~~   92 (100)
T smart00142       91 KN   92 (100)
T ss_pred             eC
Confidence            43

Outlier of C2 family.

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=94.05  E-value=0.19  Score=43.67  Aligned_cols=58  Identities=14%  Similarity=0.181  Sum_probs=47.6

Q ss_pred             ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC--CCeeeEEEEEccC
Q psy12136        309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK--SNDYLGCLELCCN  366 (399)
Q Consensus       309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~--~d~~lG~~~i~l~  366 (399)
                      ..++|-|...+.+|.|||++.+.++.+...+..|.|++++.....  ....+|-+.++|-
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            568899999999999999999999988888899999988855321  1257998888874

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=93.66  E-value=0.54  Score=39.04  Aligned_cols=75  Identities=21%  Similarity=0.177  Sum_probs=51.1

Q ss_pred             CcEEEEEEecCCCCCc--eEecccccCC-CCCeecceEEeceeCcccCC-CceEEEEEEEcCCCCC-----cceeeEEec
Q psy12136        152 DPFCKLNLVPLTKTSH--RLRTKTCLRT-INPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGH-----DFLGEARFP  222 (399)
Q Consensus       152 dpyv~v~l~~~~~~~~--~~rT~~~~~t-~nP~wne~f~f~~v~~~~l~-~~~L~~~V~d~~~~~~-----~~lG~~~i~  222 (399)
                      +.||.+.|-.++....  ...|....-+ .++.|||.+.|+ +...++. ...|.|+||..+....     ..||.+.++
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~   81 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLP   81 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence            4567777754333223  3467776666 799999999994 7766664 4789999998776544     489999999


Q ss_pred             CcccC
Q psy12136        223 LNRLR  227 (399)
Q Consensus       223 l~~l~  227 (399)
                      |-+..
T Consensus        82 lFd~~   86 (142)
T PF00792_consen   82 LFDYR   86 (142)
T ss_dssp             SB-TT
T ss_pred             eECCC
Confidence            98763

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=93.56  E-value=0.28  Score=42.74  Aligned_cols=58  Identities=16%  Similarity=0.211  Sum_probs=47.4

Q ss_pred             ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC----CCeeeEEEEEccC
Q psy12136        309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK----SNDYLGCLELCCN  366 (399)
Q Consensus       309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~----~d~~lG~~~i~l~  366 (399)
                      ..++|-|...+.+|.|+|++...|+.+...+..|.|++++.....    ....+|-+.++|-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            678899999999999999999999988888899999998865321    1246888888864

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1452|consensus

Probab=93.09  E-value=0.44  Score=44.04  Aligned_cols=82  Identities=22%  Similarity=0.169  Sum_probs=58.0

Q ss_pred             EEEeCCCCEEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCce
Q psy12136        123 VTYDSTTCSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQS  200 (399)
Q Consensus       123 l~y~~~~~~L~V~V~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~  200 (399)
                      ++.....+.|.++++.+|+|.....  .-..+-||.+...    ...+.||.+.....--.|.|+|..+ +-    ....
T Consensus        44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d----rqh~aRt~vrs~~~~f~w~e~F~~D-vv----~~~v  114 (442)
T KOG1452|consen   44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD----RQHPARTRVRSSGPGFAWAEDFKHD-VV----NIEV  114 (442)
T ss_pred             eeeecccceEEEEEecccccccChhccCceeeeeeeeeec----ccCccccccccCCCCccchhhceee-cc----ccee
Confidence            4444567899999999999975433  3356788887764    2356677666666667789999873 32    2367


Q ss_pred             EEEEEEEcCCCCC
Q psy12136        201 LHILVLDDDKYGH  213 (399)
Q Consensus       201 L~~~V~d~~~~~~  213 (399)
                      +.+-||.|+...+
T Consensus       115 l~~lvySW~pq~R  127 (442)
T KOG1452|consen  115 LHYLVYSWPPQRR  127 (442)
T ss_pred             eeEEEeecCchhh
Confidence            8899999987754

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=88.82  E-value=5  Score=30.38  Aligned_cols=63  Identities=17%  Similarity=0.139  Sum_probs=41.7

Q ss_pred             CCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcc
Q psy12136        151 SDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNR  225 (399)
Q Consensus       151 ~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~  225 (399)
                      .+..+.+.+.    +.....|.-. ...+..|++.|.+ .+...    ..|.|.||=+|.  +.+.|-..+.|.+
T Consensus         9 ~eV~avLklD----n~~VgqT~Wk-~~s~q~WDQ~Fti-~LdRs----RELEI~VywrD~--RslCav~~lrLEd   71 (98)
T cd08687           9 SEVSAVLKLD----NTVVGQTQWK-PKSNQAWDQSFTL-ELERS----RELEIAVYWRDW--RSLCAVKFLKLED   71 (98)
T ss_pred             cceEEEEEEc----CeEEeecccc-ccccccccceeEE-Eeecc----cEEEEEEEEecc--hhhhhheeeEhhh
Confidence            4666677764    2345566554 3357889999998 45433    789999996654  2456666677776

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=88.79  E-value=1.5  Score=37.90  Aligned_cols=61  Identities=20%  Similarity=0.236  Sum_probs=48.1

Q ss_pred             ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC------CeeeEEEEEccCCCC
Q psy12136        309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS------NDYLGCLELCCNSKG  369 (399)
Q Consensus       309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~------d~~lG~~~i~l~~~~  369 (399)
                      ....|.|...+.+|.|+|++...++.....+..|.|+.++..-..+      ...+|-+.++|-..+
T Consensus        54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~g  120 (179)
T cd08696          54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRNG  120 (179)
T ss_pred             eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecCC
Confidence            6788999999999999999999998776677889999998553211      246999998876533

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=88.29  E-value=1.3  Score=38.37  Aligned_cols=57  Identities=23%  Similarity=0.333  Sum_probs=43.2

Q ss_pred             eEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC-----CCCeeeEEEEEccCC
Q psy12136        310 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG-----KSNDYLGCLELCCNS  367 (399)
Q Consensus       310 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~-----~~d~~lG~~~i~l~~  367 (399)
                      .++|-+..+ .+|.|+|+|...++.....+..|.|++++....     .....+|-+.++|-.
T Consensus        54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            344444444 899999999999976655678999999987632     335689999999875

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=86.18  E-value=2.8  Score=36.36  Aligned_cols=59  Identities=22%  Similarity=0.195  Sum_probs=46.9

Q ss_pred             ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC--CC-------CCeeeEEEEEccCC
Q psy12136        309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY--GK-------SNDYLGCLELCCNS  367 (399)
Q Consensus       309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~--~~-------~d~~lG~~~i~l~~  367 (399)
                      ....|.|...+.+|.|+|++...++.....+..|.|+.++..-  ..       ....+|-+.++|-.
T Consensus        56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            5778899999999999999999998776677889999998652  11       12469998888754

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>KOG1452|consensus

Probab=86.00  E-value=2.5  Score=39.25  Aligned_cols=84  Identities=12%  Similarity=0.017  Sum_probs=57.5

Q ss_pred             EeeeccceeEEEEEEeeecCCCCCC--CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEE
Q psy12136        266 LCFSTKKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLV  343 (399)
Q Consensus       266 l~~~~~~~~L~v~v~~a~~L~~~~~--~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~  343 (399)
                      +......|.|.++++.+|+|.....  +-+.+-|+.+....   ..+.+|.+.....--.|.|.|..++..    ...+.
T Consensus        44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr---qh~aRt~vrs~~~~f~w~e~F~~Dvv~----~~vl~  116 (442)
T KOG1452|consen   44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR---QHPARTRVRSSGPGFAWAEDFKHDVVN----IEVLH  116 (442)
T ss_pred             eeeecccceEEEEEecccccccChhccCceeeeeeeeeecc---cCccccccccCCCCccchhhceeeccc----ceeee
Confidence            3444567999999999999964432  44568888887741   245566665555556788988877652    35788


Q ss_pred             EEEEeCCCCCCCe
Q psy12136        344 ITVWDKDYGKSND  356 (399)
Q Consensus       344 i~V~d~~~~~~d~  356 (399)
                      +-||.|+.-.++.
T Consensus       117 ~lvySW~pq~RHK  129 (442)
T KOG1452|consen  117 YLVYSWPPQRRHK  129 (442)
T ss_pred             EEEeecCchhhcc
Confidence            8899998654444

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=84.99  E-value=6.2  Score=33.73  Aligned_cols=67  Identities=18%  Similarity=0.280  Sum_probs=49.4

Q ss_pred             CCcEEEEEEecCCCCceEeecceeC--CCCceecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136        294 SDPFIKLYLKPDLHKRKYKTGVKWK--TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS  367 (399)
Q Consensus       294 ~dpyV~v~l~~~~~~~~~kT~v~~~--t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~  367 (399)
                      ..-|+++.+.   ++...+|+...-  ...-.|||.|.+.+..  .. ..|.|+||.... ..+..|+++.|++-.
T Consensus        37 ~~~~ikl~~N---~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~P-esi~l~i~E~~~-~~~~~la~v~vpvP~  105 (168)
T PF15625_consen   37 TRYYIKLFFN---DKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WP-ESIKLEIYEKSG-LSDRLLAEVFVPVPG  105 (168)
T ss_pred             eeEEEEEEEC---CEEEEeeeeEecCCCeEEeccCEEEEEEec--CC-CEEEEEEEEccC-ccceEEEEEEeeCCC
Confidence            4568888884   236666665443  3346789999988863  32 689999999887 568899999999765

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=84.63  E-value=17  Score=31.01  Aligned_cols=70  Identities=14%  Similarity=0.211  Sum_probs=49.3

Q ss_pred             CCCcEEEEEEecCCCCCceEecccccCC--CCCeecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccC
Q psy12136        150 TSDPFCKLNLVPLTKTSHRLRTKTCLRT--INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR  227 (399)
Q Consensus       150 ~~dpyv~v~l~~~~~~~~~~rT~~~~~t--~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~  227 (399)
                      ...-|++|.+.    +....+|+...-+  ..-.|||.|.+ .+..  + -..|.+.||.....++.+|+++.+|+-...
T Consensus        36 ~~~~~ikl~~N----~k~V~~T~~~~l~~dF~v~f~~~f~v-~i~~--~-Pesi~l~i~E~~~~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   36 KTRYYIKLFFN----DKEVSRTRSRPLWSDFRVHFNEIFNV-QITR--W-PESIKLEIYEKSGLSDRLLAEVFVPVPGST  107 (168)
T ss_pred             heeEEEEEEEC----CEEEEeeeeEecCCCeEEeccCEEEE-EEec--C-CCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence            35678888886    3456666664432  23567899988 4543  2 378999999988855599999999987654

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=83.04  E-value=19  Score=31.28  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=45.0

Q ss_pred             CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC---------CC-cceeeEEecCcc
Q psy12136        166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY---------GH-DFLGEARFPLNR  225 (399)
Q Consensus       166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~---------~~-~~lG~~~i~l~~  225 (399)
                      .....|.+..++.+|.|+|++.+ .++.......-|.|+.++....         .. ..+|-+.+||-.
T Consensus        55 ~~~~~s~V~yh~k~P~f~dEiKI-~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          55 TTSAYAAVLHHNQNPEFYDEIKI-ELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             ceEEEEEEEEcCCCCccceeEEE-ecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            45678888889999999999999 6887777778899999986521         11 447777777654

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=82.72  E-value=4.5  Score=31.79  Aligned_cols=62  Identities=18%  Similarity=0.153  Sum_probs=33.6

Q ss_pred             CceEecccccCCCCCeecceEEeceeCcccC-----CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCc
Q psy12136        166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDL-----SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI  230 (399)
Q Consensus       166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l-----~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~  230 (399)
                      -+.+.|.++. +.+|.||-+-.| .|..+++     ....+.++++..- ..+ ..+|.+.+++..+....
T Consensus        10 fEtq~Tpvv~-G~~p~y~fts~y-~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~   77 (107)
T PF11618_consen   10 FETQTTPVVR-GLNPFYDFTSQY-KVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESN   77 (107)
T ss_dssp             ---EE---EE-SSS----EEEEE-EE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--
T ss_pred             eeeeccccee-CCCccceeEEEE-EEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCC
Confidence            4567777775 889999998888 6776653     4578899999866 455 89999999999987443

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=81.71  E-value=3.5  Score=35.58  Aligned_cols=56  Identities=14%  Similarity=0.180  Sum_probs=41.2

Q ss_pred             eEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC-----CC-cceeeEEecCcc
Q psy12136        168 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-----GH-DFLGEARFPLNR  225 (399)
Q Consensus       168 ~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~-----~~-~~lG~~~i~l~~  225 (399)
                      .++|-+..+ .+|.|+|+|.. .++.......-|.|++++....     .. ..+|-+.+||-+
T Consensus        54 ~~~sv~~~~-k~p~f~deiKi-~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          54 EYTSVVYYH-KNPVFNDEIKI-QLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             eEEEEEEcC-CCCCCceeEEE-ecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            344444444 89999999999 6876665778999999986532     23 678888888875

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	399
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		3e-36
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		2e-35
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		7e-35
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		6e-30
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		4e-24
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		3e-09
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		6e-24
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		3e-09
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		1e-22
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		1e-22
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		5e-19
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		5e-16
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		5e-16
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		6e-16
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		2e-15
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		8e-14
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		8e-10
2lha_A	151	Solution Structure Of C2b With Ip6 Length = 151		1e-13
1k5w_A	152	Three-Dimensional Structure Of The Synaptotagmin 1		1e-13
1tjm_A	159	Crystallographic Identification Of Sr2+ Coordinatio		1e-13
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		2e-13
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		2e-12
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		2e-12
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		4e-12
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		3e-11
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		3e-11
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		5e-11
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		2e-06
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		7e-11
2dmg_A	142	Solution Structure Of The Third C2 Domain Of Kiaa12		8e-11
1w15_A	153	Rat Synaptotagmin 4 C2b Domain In The Presence Of C		2e-10
3fdw_A	148	Crystal Structure Of A C2 Domain From Human Synapto		2e-09
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		1e-06
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		8e-04
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		4e-06
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		8e-05
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		2e-04
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		3e-04
2b3r_A	134	Crystal Structure Of The C2 Domain Of Class Ii Phos		4e-04
2b3r_A	134	Crystal Structure Of The C2 Domain Of Class Ii Phos		5e-04
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		5e-04
3nsj_A	540	The X-Ray Crystal Structure Of Lymphocyte Perforin		7e-04

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 316
           + GKI ++L +ST++  LIV +I+C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K
Sbjct: 22  ERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIK 81
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 376
            KTLNP FNEEF  + K ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW 
Sbjct: 82  KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWY 141
Query: 377 DMMKYPDHKHEGIHNLS 393
           + +K  D K E  H L 
Sbjct: 142 ECLKNKDKKIERWHQLQ 158

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 101/135 (74%), Gaps = 1/135 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 318
           GKI ++L +ST++  LIV +I+C +L  MD+NG+SDPF+KL+LKPD+ K+ K+KT +K K
Sbjct: 2   GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
           TLNP FNEEF  + K ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + 
Sbjct: 62  TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYEC 121
Query: 379 MKYPDHKHEGIHNLS 393
           +K  D K E  H L 
Sbjct: 122 LKNKDKKIERWHQLQ 136

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score =  144 bits (364), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 100/137 (72%), Gaps = 1/137 (0%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 316
           + GKI ++L +ST++  LIV +I+C +L   D+NG+SDPF+KL+LKPD  K+ K+KT +K
Sbjct: 22  ERGKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIK 81
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 376
            KTLNP FNEEF  + K ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW 
Sbjct: 82  KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWY 141
Query: 377 DMMKYPDHKHEGIHNLS 393
           + +K  D K E  H L 
Sbjct: 142 ECLKNKDKKIERWHQLQ 158

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score =  128 bits (321), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 146/283 (51%), Gaps = 17/283 (6%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
           LG ++ ++ YD     L V + +A  L A+D+ GTSDP+ K+ L+P  K   +  TK   
Sbjct: 5   LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHR 62
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR-PHISRD 233
           +T+NP F+E+ TF  V  ++L+ ++L + V D D++  HD +GE + P+N +   H++ +
Sbjct: 63  KTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 121
Query: 234 LCLNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF 293
                       R           + G I  +L +      L V +++  NL  MD  G 
Sbjct: 122 W-----------RDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGL 170
Query: 294 SDPFIKLYLKPD-LHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352
           SDP++K++L  +    +K KT +K  TLNP +NE F+ E    ++ K  +V+TV D D  
Sbjct: 171 SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 230
Query: 353 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395
             ND +G + +  NS G  LRHW DM+  P       H L ++
Sbjct: 231 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Query: 103 EKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL 162
           E   + + QA T LG++E ++ YD    +L  T+ RAKGL+ MD +G +DP+ KL+L+P 
Sbjct: 3   EANSYDSDQA-TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPG 61
Query: 163 TKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARF 221
              S++LRTKT   T NP ++E L ++ ++E D+  ++L I V D+DK+GH +F+GE RF
Sbjct: 62  ASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRF 121
Query: 222 PLNRLRPHISRDLCLNLC 239
            L +L+ +  ++   N+C
Sbjct: 122 SLKKLKANQRKN--FNIC 137

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G +  +L +      L   +I+   L PMDSNG +DP++KL+L P   K  K +T     
Sbjct: 16  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 319 TLNPIFNEEFAIETKITE--LSKQTLVITVWDKDYGKSNDYLG 359
           T NP++NE       ITE  + ++TL I+V D+D    N+++G
Sbjct: 76  TRNPVWNETLQYHG-ITEEDMQRKTLRISVCDEDKFGHNEFIG 117

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 86/131 (65%), Gaps = 3/131 (2%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
           S   T LG++E ++ YD    +L  T+ RAKGL+ MD +G +DP+ KL+L+P    S++L
Sbjct: 7   SDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 66
Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228
           RTKT   T NP ++E L ++ ++E D+  ++L I V D+DK+GH +F+GE RF L +L+ 
Sbjct: 67  RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 126
Query: 229 HISRDLCLNLC 239
           +  ++   N+C
Sbjct: 127 NQRKN--FNIC 135

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G +  +L +      L   +I+   L PMDSNG +DP++KL+L P   K  K +T     
Sbjct: 14  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 73
Query: 319 TLNPIFNEEFAIETKITE--LSKQTLVITVWDKDYGKSNDYLG 359
           T NP++NE       ITE  + ++TL I+V D+D    N+++G
Sbjct: 74  TRNPVWNETLQYHG-ITEEDMQRKTLRISVCDEDKFGHNEFIG 115

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
            +A    G I   + Y   +  L V + +A  L A D +G SDP+ K+ L+P  K   + 
Sbjct: 1   GEAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKK--KF 58
Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 228
           +TK   +T+NP F+E   F SV   +L+ + LH  V D D++  HD +G+          
Sbjct: 59  QTKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQ---------- 107
Query: 229 HISRDLCLNLCKH---YPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNL 285
            +  D  L L +     P+ R             G++  +LC+      L V +IK +NL
Sbjct: 108 -VVLDNLLELAEQPPDRPLWRDILEGGSEKA-DLGELNFSLCYLPTAGLLTVTIIKASNL 165
Query: 286 IPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVI 344
             MD  GFSDP++K  L  +  + +K KT +K  TLNP +NE    +     +    L I
Sbjct: 166 KAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 225
Query: 345 TVWDKDYGKSNDYLGCLELCCNSKGDRLR-HWVDMMKYPDHKHEGIHNL 392
            V D D    N+ +G   +   +     R HW +M+  P    E  H L
Sbjct: 226 AVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 274

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 130/288 (45%), Gaps = 21/288 (7%)
Query: 111 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLR 170
           +A    G I   + Y   +  L V + +A  L A D +G SDP+ K+ L+P  K   + +
Sbjct: 1   EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKK--KFQ 58
Query: 171 TKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPH 229
           TK   +T+NP F+E   F SV   +L+ + LH  V D D++  HD +G+           
Sbjct: 59  TKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQ----------- 106
Query: 230 ISRDLCLNLCKH---YPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLI 286
           +  D  L L +     P+ R             G++  +LC+      L V +IK +NL 
Sbjct: 107 VVLDNLLELAEQPPDRPLWRDILEGGSEKA-DLGELNFSLCYLPTAGLLTVTIIKASNLK 165
Query: 287 PMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 345
            MD  GFSDP++K  L  +  + +K KT +K  TLNP +NE    +     +    L I 
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 225
Query: 346 VWDKDYGKSNDYLGCLELCCNSKGDRLR-HWVDMMKYPDHKHEGIHNL 392
           V D D    N+ +G   +   +     R HW +M+  P    E  H L
Sbjct: 226 VVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK-PDLHKRKYKTGVKW 317
            G++ L+LC++    ++IVN+IK  NL  MD  G SDP++K++L   D    K KT  K 
Sbjct: 2   RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61
Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVD 377
           + LNPIFNE FA +    +L + T++ITV DKD    ND +G + L   S    ++HW D
Sbjct: 62  RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKD 121
Query: 378 MMKYPDHKHEGIHNL 392
           M+  P       H L
Sbjct: 122 MIARPRQPVAQWHQL 136

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
           GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K++T V  KT
Sbjct: 21  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 79
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 377
           LNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G  ++  N+   G     W D
Sbjct: 80  LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 378 M 378
           +
Sbjct: 140 L 140

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
           GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K++T V  KT
Sbjct: 21  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 79
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 377
           LNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G  ++  N+   G     W D
Sbjct: 80  LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 378 M 378
           +
Sbjct: 140 L 140

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
           GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K++T V  KT
Sbjct: 29  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 87
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 377
           LNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G  ++  N+   G     W D
Sbjct: 88  LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 147
Query: 378 M 378
           +
Sbjct: 148 L 148

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
           GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K++T V  KT
Sbjct: 4   GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 62
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 377
           LNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G  ++  N+   G     W D
Sbjct: 63  LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 122
Query: 378 M 378
           +
Sbjct: 123 L 123

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
           NLG I+ +V Y+    +L V + +A+ L A D  GTSDPF K+ L+P  K  H+L TK  
Sbjct: 11  NLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVK 68
Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
            + +NP ++E   F       +  + L++ VLD D++  +D +GE   PLN++
Sbjct: 69  RKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
           G+I  ++ ++ ++  L V ++K   L   D +G SDPF+K+YL PD  K K +T VK K 
Sbjct: 13  GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 71
Query: 320 LNPIFNEEFAIETKITE-LSKQTLVITVWDKDYGKSNDYLGCLELCCN 366
           LNP +NE F  E    E + ++ L + V D D    ND +G + +  N
Sbjct: 72  LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLN 119

>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 318
           G I  +L +      L V +++  NL  MD  G SDP++K++L  +    +K KT +K  
Sbjct: 4   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 63
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
           TLNP +NE F+ E    ++ K  +V+TV D D    ND +G + +  NS G  LRHW DM
Sbjct: 64  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 123
Query: 379 MKYPDHKHEGIHNLSIK 395
           +  P       H L ++
Sbjct: 124 LANPRRPIAQWHTLQVE 140

>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 318
           G I  +L +      L V +++  NL  MD  G SDP++K++L  +    +K KT +K  
Sbjct: 5   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 64
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
           TLNP +NE F+ E    ++ K  +V+TV D D    ND +G + +  NS G  LRHW DM
Sbjct: 65  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 124
Query: 379 MKYPDHKHEGIHNLSIK 395
           +  P       H L ++
Sbjct: 125 LANPRRPIAQWHTLQVE 141

>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 318
           G I  +L +      L V +++  NL  MD  G SDP++K++L  +    +K KT +K  
Sbjct: 12  GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
           TLNP +NE F+ E    ++ K  +V+TV D D    ND +G + +  NS G  LRHW DM
Sbjct: 72  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131
Query: 379 MKYPDHKHEGIHNLSIK 395
           +  P       H L ++
Sbjct: 132 LANPRRPIAQWHTLQVE 148

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 15/129 (11%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--------RKY 311
           G+I L + +      LI+++++  NL+P D+NG+SDPF+K+YL P   +         +Y
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 312 KTGVKW--KTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 366
           K   K+  K+LNP +N+    ++  + +L K+TL +TVWD D   SND+LG   ++L   
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 367 SKGDRLRHW 375
           S  D    W
Sbjct: 125 SHLDNTPRW 133

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 316
           + G+I+L    + +K  L V +    NLIPMD NG SDP++KL L PD  ++ K KT   
Sbjct: 4   KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI 61
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 366
             TLNP +NE F  + K ++  ++ L + +WD D    ND++G L    +
Sbjct: 62  RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFMGSLSFGVS 110

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 316
           + G+I+L    + +K  L V +    NLIPMD NG SDP++KL L PD  ++ K KT   
Sbjct: 3   KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI 60
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCC 365
             TLNP +NE F  + K ++  ++ L + +WD D    ND++G L    
Sbjct: 61  RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFMGSLSFGV 108

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 277 VNLIKCTNLIPMDSNGFSDPFIKLYLKPD---LHKRKYKTGVKWKTLNPIFNEEFAIETK 333
           V + +  NLIPMD NG SDP++KL L PD   L K+K +T VK  TLNP++NE F    K
Sbjct: 24  VTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRT-VK-ATLNPVWNETFVFNLK 81
Query: 334 ITELSKQTLVITVWDKDYGKSNDYLGCLELCC 365
             ++ ++ L + VWD D    ND++G +    
Sbjct: 82  PGDVERR-LSVEVWDWDRTSRNDFMGAMSFGV 112

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 316
           + G+I+L    + +K  L V +    NLIP D NG SDP++KL L PD  ++ K KT   
Sbjct: 5   KRGRIYLKAEVADEK--LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTI 62
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCC 365
             TLNP +NE F  + K ++  ++ L + +WD D    ND+ G L    
Sbjct: 63  RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFXGSLSFGV 110

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 316
           + G+I++       +  LIV +    NL+PMD NG SDP++KL L PD   + K KT   
Sbjct: 159 RRGRIYIQA--HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 216
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
             +LNP +NE F  + K ++  ++ L + +WD D    ND++G L  
Sbjct: 217 KSSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTSRNDFMGSLSF 262

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 121 LTVTYDSTTCSLHVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHRLRTKTCLRTIN 179
            ++ Y+    +  V +  A+GL AMD    TSDP+ K+ ++P  K  H+++T+   +T++
Sbjct: 13  FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLD 70
Query: 180 PEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 224
           P F E  TFY +  T +   +LH  +L  D++   D +GE   PL+
Sbjct: 71  PAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLS 116

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 262 IFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWKTL 320
           +F +L ++ +++A +VN+ +   L  MD     SDP+IK+ + P+  K K KT V  KTL
Sbjct: 11  LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRKTL 69
Query: 321 NPIFNEEFAI----ETKITELSKQTLVITVWDKDYGKSNDYLG 359
           +P F+E F       T+I EL+   L  T+   D    +D +G
Sbjct: 70  DPAFDETFTFYGIPYTQIQELA---LHFTILSFDRFSRDDIIG 109

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 316
           + G+I++       +  LIV +    NL+PMD NG SDP++KL L PD   + K KT   
Sbjct: 18  RRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 75
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCL 361
             +LNP +NE F  + K ++  ++ L + +WD D    ND++G L
Sbjct: 76  KCSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTSRNDFMGSL 119

>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228 Protein Length = 142

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 318
           G+I LT+  S+++  LIV +  C NLI    +G SDP++++YL PD  +  + KT V  K
Sbjct: 11  GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITV 346
           TLNP+F++ F     + E+ ++TL + V
Sbjct: 70  TLNPVFDQSFDFSVSLPEVQRRTLDVAV 97

>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G++ ++LC+ +    L V ++K  +L   D +G SDP++K+ L     +  K KT VK  
Sbjct: 17  GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 76
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
           T N +FNE F  +     L + ++   V D + G  N+ +G L L   ++G    HW ++
Sbjct: 77  TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEI 136
Query: 379 MKYPDHKHEGIHNL 392
             +P  +    H L
Sbjct: 137 CDFPRRQIAKWHML 150

>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 317
           G+I  +L +  + ++L+V++ +C  L   D +   S+P++K YL PD  ++ K KT +K 
Sbjct: 10  GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 367
            T+NP+++E    E   + L+++TL  +VW       N +LG  E+  +S
Sbjct: 70  DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS 119

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V + +A  L A D  G SDPFC L L      + RL+T T  + +NPE+++  TF   
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLEL-----GNDRLQTHTVYKNLNPEWNKVFTFPIK 69
Query: 192 SETDLSLQSLHILVLDDD-KYGHDFLGEARFPLNRLR 227
              D+    L + V D+D     DFLG+   PL  +R
Sbjct: 70  DIHDV----LEVTVFDEDGDKPPDFLGKVAIPLLSIR 102

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V ++K  +L+  D +G SDPF  L L  D    + +T   +K LNP +N+ F    K 
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLELGND----RLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 335 TELSKQTLVITVWDKDYGKSNDYLG 359
                  L +TV+D+D  K  D+LG
Sbjct: 71  IH---DVLEVTVFDEDGDKPPDFLG 92

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-------GFSDPFIKLYLKPDLHKR 309
           +Q G +  +  +      L V +I+  +L P  S+         S+P++K+ L PD  K 
Sbjct: 10  YQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD-QKN 68
Query: 310 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 350
             +TGVK KT  P+F E +  E    E  ++TL++TV D D
Sbjct: 69  SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFD 109

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 125 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLV-PLTKTSHRLRTKTCLRTINPEFH 183
           ++  T  + V +    GL   DI G SDP+ ++ L  P++     ++TKT  +++NP+++
Sbjct: 3   HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 184 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL--------RPHISRDL 234
           E++ F  + +       +   V D+++    DFLG+   PL  L        RP+  +D 
Sbjct: 63  EEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDF 118
Query: 235 CLNLCKH 241
            L+   H
Sbjct: 119 VLHPRSH 125

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 114 TNLGSIELTVTYDSTTCS-LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHR--LR 170
           T LG     ++ D      L V +     L   DI G SDP+ KL+L    +      ++
Sbjct: 4   TGLGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQ 63
Query: 171 TKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL--- 226
           TKT  +T+NP+++E+  F      + S   L   V D+++    DFLG+   PL+ L   
Sbjct: 64  TKTIKKTLNPKWNEEFYF----RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTE 119
Query: 227 -----RPHISRDLCLNLCKH 241
                RP+  +D  L    H
Sbjct: 120 DPTMERPYTFKDFLLRPRSH 139

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 141 GLRAMDIHGTSDPFCKLNLV-PLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQ 199
           GL   DI G SDP+ ++ L  P+      ++TKT  +++NP+++E++ F    +      
Sbjct: 31  GLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQ----H 86
Query: 200 SLHILVLDDDKYGH-DFLGEARFPLNRL--------RPHISRDLCLNLCKH 241
            L   V D+++    DFLG+   PL  L        RP+  +D  L+   H
Sbjct: 87  RLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSH 137

>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G+++L+V+Y + T  L + +   K L   D     +P+ K  L+P T  + + +TK   +
Sbjct: 9   GAVKLSVSYRNGT--LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPL 223
           T NP F+E L +   S+  L  + L + VL  +    + FLG    PL
Sbjct: 66  TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPL 113

>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G   + L  S +   L + ++   +L+  D     +P++K YL PD HK  K KT +  K
Sbjct: 7   GSGAVKLSVSYRNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 319 TLNPIFNEEFAIETKITE-LSKQTLVITVWDKDYGKSNDYLGCLEL 363
           T NP FNE         E L ++ L ++V   +  + N +LG + L
Sbjct: 66  TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITL 111

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G + + + +D     L VT+  AK L + +     +P+ K+  +P     ++ RTKT  +
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGE 218
           T+ P++++   +  V   +   + L I + D  +      +FLGE
Sbjct: 65  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGE 109

>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin Length = 540

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 301 YLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG 359
           YLK     ++++TGV W   NP + ++   E  +   +   L + VWD DYG  +D LG
Sbjct: 417 YLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLS-TGGPLRVQVWDADYGWDDDLLG 474

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	399
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-84
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-23
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	9e-81
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-34
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-24
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	6e-50
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	4e-28
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	8e-49
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-28
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-48
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-27
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-47
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	5e-27
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-42
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	5e-32
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	6e-42
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	5e-32
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-40
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-35
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	7e-39
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-29
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-38
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-31
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-37
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	4e-34
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-37
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-29
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	7e-37
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-27
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-36
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	6e-35
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-36
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	8e-31
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-36
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	4e-35
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	3e-36
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-29
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-35
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	9e-34
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	5e-35
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-34
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-34
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-29
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	3e-32
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-27
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-31
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	7e-26
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	5e-30
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	7e-30
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-29
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	9e-29
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	4e-27
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	6e-23
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	2e-25
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	4e-24
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	4e-24
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-23
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-23
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-22
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-22
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	7e-22
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-21
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	7e-21
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	8e-21
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	8e-20
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	4e-18
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-17
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-17
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	3e-15
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-16
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	5e-16
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	5e-16
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-15
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-11
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	7e-08
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-08
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-05
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-04
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	2e-05
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	3e-04
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-05

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  258 bits (662), Expect = 1e-84
 Identities = 91/283 (32%), Positives = 147/283 (51%), Gaps = 15/283 (5%)

Query: 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 171
               LG ++ ++ YD     L V + +A  L A+D+ GTSDP+ K+ L+P  K   +  T
Sbjct: 1   GSEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFET 58

Query: 172 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHI 230
           K   +T+NP F+E+ TF  V  ++L+ ++L + V D D++  HD +GE + P+N +    
Sbjct: 59  KVHRKTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 117

Query: 231 SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS 290
             +   +L          +   +EE  + G I  +L +      L V +++  NL  MD 
Sbjct: 118 VTEEWRDL----------QSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDV 167

Query: 291 NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK 349
            G SDP++K++L  +  + +K KT +K  TLNP +NE F+ E    ++ K  +V+TV D 
Sbjct: 168 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 227

Query: 350 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 392
           D    ND +G + +  NS G  LRHW DM+  P       H L
Sbjct: 228 DKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 98.7 bits (246), Expect = 1e-23
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 94  TLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDP 153
                            +    LG I  ++ Y  T   L V +  AK L+ MD+ G SDP
Sbjct: 114 DFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDP 173

Query: 154 FCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG- 212
           + K++L+   K   + +T     T+NP ++E  +F  V    +    + + VLD DK G 
Sbjct: 174 YVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGK 232

Query: 213 HDFLGEARFPLN 224
           +D +G+     N
Sbjct: 233 NDAIGKVFVGYN 244

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  248 bits (636), Expect = 9e-81
 Identities = 81/285 (28%), Positives = 126/285 (44%), Gaps = 15/285 (5%)

Query: 111 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLR 170
           +A    G I   + Y   +  L V + +A  L A D +G SDP+ K+ L+P  K   + +
Sbjct: 1   EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK--KKFQ 58

Query: 171 TKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPH 229
           TK   +T+NP F+E   F SV   +L+ + LH  V D D++  HD +G+           
Sbjct: 59  TKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL----L 113

Query: 230 ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD 289
              +   +      +       G  E    G++  +LC+      L V +IK +NL  MD
Sbjct: 114 ELAEQPPDRPLWRDIL-----EGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMD 168

Query: 290 SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 348
             GFSDP++K  L  +  + +K KT +K  TLNP +NE    +     +    L I V D
Sbjct: 169 LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD 228

Query: 349 KDYGKSNDYLGCLELCCNSKGDR-LRHWVDMMKYPDHKHEGIHNL 392
            D    N+ +G   +   +       HW +M+  P    E  H L
Sbjct: 229 YDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  127 bits (321), Expect = 3e-34
 Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
           G+I   L +      L+V +++  +L   DSNGFSDP++K+YL PD  K+K++T V  KT
Sbjct: 7   GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 65

Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMM 379
           LNPIFNE F     + EL+++ L  +V+D D    +D +G + L    +         + 
Sbjct: 66  LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 125

Query: 380 KY-----PDHKHEGIHNLSIK 395
           +       +    G  N S+ 
Sbjct: 126 RDILEGGSEKADLGELNFSLC 146

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  100 bits (251), Expect = 2e-24
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 100 ITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNL 159
               ++         +LG +  ++ Y  T   L VT+ +A  L+AMD+ G SDP+ K +L
Sbjct: 122 RPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASL 181

Query: 160 VPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGE 218
           +   +   + +T     T+NP ++E L F  V+   +    L I V+D D  GH + +G 
Sbjct: 182 ISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAPESVENVGLSIAVVDYDCIGHNEVIGV 240

Query: 219 ARFPLNRLRPH 229
            R       PH
Sbjct: 241 CRVGPEAADPH 251

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  165 bits (419), Expect = 6e-50
 Identities = 73/148 (49%), Positives = 106/148 (71%), Gaps = 1/148 (0%)

Query: 246 REEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 305
            EE+V    +  + GKI ++L +ST++  LIV +I+C +L  MD+NG+SDPF+KL+LKPD
Sbjct: 10  EEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPD 69

Query: 306 LHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC 364
           + K  K+KT +K KTLNP FNEEF  + K ++L+K++L I+VWD D GKSNDY+G  +L 
Sbjct: 70  MGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG 129

Query: 365 CNSKGDRLRHWVDMMKYPDHKHEGIHNL 392
            ++KG+RL+HW + +K  D K E  H L
Sbjct: 130 ISAKGERLKHWYECLKNKDKKIERWHQL 157

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  107 bits (269), Expect = 4e-28
 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
            G I +++ Y +    L V + R   L AMD +G SDPF KL L P      + +T+   
Sbjct: 23  RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 82

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
           +T+NPEF+E+  +  +  +DL+ +SL I V D D    +D++G  +  ++
Sbjct: 83  KTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  161 bits (409), Expect = 8e-49
 Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G++ L+LC++    ++IVN+IK  NL  MD  G SDP++K++L     +  K KT  K +
Sbjct: 3   GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
            LNPIFNE FA +    +L + T++ITV DKD    ND +G + L   S    ++HW DM
Sbjct: 63  NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDM 122

Query: 379 MKYPDHKHEGIHNL 392
           +  P       H L
Sbjct: 123 IARPRQPVAQWHQL 136

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  108 bits (271), Expect = 1e-28
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 2/111 (1%)

Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
           + G + L++ Y+ +  S+ V + +A+ L+AMDI GTSDP+ K+ L+   K   + +T T 
Sbjct: 1   SRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTK 60

Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 224
            R +NP F+E   F  +    L   ++ I V+D DK    D +G+      
Sbjct: 61  KRNLNPIFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  161 bits (409), Expect = 1e-48
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVK 316
             G++ ++LC+ +    L V ++K  +L   D +G SDP++K+ L     +  K KT VK
Sbjct: 15  GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVK 74

Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 376
             T N +FNE F  +     L + ++   V D + G  N+ +G L L   ++G    HW 
Sbjct: 75  KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWK 134

Query: 377 DMMKYPDHKHEGIHNLS 393
           ++  +P  +    H L 
Sbjct: 135 EICDFPRRQIAKWHMLC 151

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  105 bits (264), Expect = 2e-27
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 2/110 (1%)

Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
            G + +++ Y STT +L V + +A+ L   D+ G SDP+ K+NL    K   + +T    
Sbjct: 16  RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 75

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 224
            T N  F+E   F  +    L   S+  LVLD ++    + +G       
Sbjct: 76  CTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 124

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  158 bits (401), Expect = 2e-47
 Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G I  +L +      L V +++  NL  MD  G SDP++K++L  +  + +K KT +K  
Sbjct: 12  GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
           TLNP +NE F+ E    ++ K  +V+TV D D    ND +G + +  NS G  LRHW DM
Sbjct: 72  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131

Query: 379 MKYPDHKHEGIHNL 392
           +  P       H L
Sbjct: 132 LANPRRPIAQWHTL 145

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  104 bits (261), Expect = 5e-27
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
           LG I  ++ Y  T   L V +  AK L+ MD+ G SDP+ K++L+   K   + +T    
Sbjct: 11  LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 70

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
            T+NP ++E  +F  V    +    + + VLD DK G +D +G+     N
Sbjct: 71  NTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  144 bits (366), Expect = 2e-42
 Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 3/137 (2%)

Query: 244 VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 303
           +        +    + GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L 
Sbjct: 5   IGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 64

Query: 304 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 361
           PD  K+K++T V  KTLNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G   +
Sbjct: 65  PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 123

Query: 362 ELCCNSKGDRLRHWVDM 378
            +     G     W D+
Sbjct: 124 PMNTVDFGHVTEEWRDL 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  117 bits (295), Expect = 5e-32
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 4/120 (3%)

Query: 108 VTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSH 167
           +       LG ++ ++ YD     L V + +A  L A+D+ GTSDP+ K+ L+P      
Sbjct: 12  ILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP--DKKK 69

Query: 168 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
           +  TK   +T+NP F+E+ TF  V  ++L  ++L + V D D++  HD +GE + P+N +
Sbjct: 70  KFETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  143 bits (363), Expect = 6e-42
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 3/138 (2%)

Query: 244 VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 303
           +    E    +E  + GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L 
Sbjct: 13  LDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 72

Query: 304 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 361
           PD  K+K++T V  KTLNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G   +
Sbjct: 73  PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 131

Query: 362 ELCCNSKGDRLRHWVDMM 379
            +     G     W D+ 
Sbjct: 132 PMNTVDFGHVTEEWRDLQ 149

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  117 bits (295), Expect = 5e-32
 Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 4/136 (2%)

Query: 92  SGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTS 151
             +   G I +        + +  LG ++ ++ YD     L V + +A  L A+D+ GTS
Sbjct: 4   GISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTS 63

Query: 152 DPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211
           DP+ K+ L+P      +  TK   +T+NP F+E+ TF  V  ++L  ++L + V D D++
Sbjct: 64  DPYVKVFLLP--DKKKKFETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRF 120

Query: 212 G-HDFLGEARFPLNRL 226
             HD +GE + P+N +
Sbjct: 121 SKHDIIGEFKVPMNTV 136

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  139 bits (353), Expect = 2e-40
 Identities = 51/132 (38%), Positives = 86/132 (65%), Gaps = 1/132 (0%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
           S   T LG++E ++ YD    +L  T+ RAKGL+ MD +G +DP+ KL+L+P    S++L
Sbjct: 9   SDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 68

Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 228
           RTKT   T NP ++E L ++ ++E D+  ++L I V D+DK+G ++F+GE RF L +L+ 
Sbjct: 69  RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 128

Query: 229 HISRDLCLNLCK 240
           +  ++  + L +
Sbjct: 129 NQRKNFNICLER 140

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  126 bits (319), Expect = 1e-35
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 247 EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL 306
           E   +  ++    G +  +L +      L   +I+   L PMDSNG +DP++KL+L P  
Sbjct: 3   EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGA 62

Query: 307 HK-RKYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELC 364
            K  K +T     T NP++NE          ++ ++TL I+V D+D    N+++G     
Sbjct: 63  SKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFS 122

Query: 365 CNSKGDRLRHWVDM 378
                   R   ++
Sbjct: 123 LKKLKANQRKNFNI 136

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  135 bits (342), Expect = 7e-39
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 5/132 (3%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 318
           G+I++       +  LIV +    NL+PMD NG SDP++KL L PD     K KT     
Sbjct: 20  GRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 77

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 377
           +LNP +NE F  + K ++  +  L + +WD D    ND++G L    +  +   +  W  
Sbjct: 78  SLNPEWNETFRFQLKESDKDR-RLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 136

Query: 378 MMKYPDHKHEGI 389
           ++   + ++  +
Sbjct: 137 LLSQEEGEYFNV 148

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  110 bits (278), Expect = 2e-29
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
             G I +    D     L V +  AK L  MD +G SDP+ KL L+P  K+  + +TKT 
Sbjct: 18  RRGRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 75

Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 228
             ++NPE++E   F  + E+D   + L + + D D    +DF+G   F ++ L+ 
Sbjct: 76  KCSLNPEWNETFRF-QLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQK 128

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  134 bits (340), Expect = 2e-38
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 317
           G+I  +L +  + ++L+V++ +C  L   D +   S+P++K YL PD  ++ K KT +K 
Sbjct: 10  GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69

Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 375
            T+NP+++E    E   + L+++TL  +VW       N +LG  E+  +S     +L H 
Sbjct: 70  DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHC 129

Query: 376 VDMMKYPDHKHEGIH 390
           + +      + EG H
Sbjct: 130 LPLHGKISAESEGHH 144

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  115 bits (291), Expect = 2e-31
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 8/146 (5%)

Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTC 174
            G I  ++ Y+  T SL V +     L   D     S+P+ K  L+P      + +T   
Sbjct: 9   TGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK 68

Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRD 233
             T+NP + E L +  + E+ L+ ++L   V    ++G + FLGEA   ++  +     D
Sbjct: 69  RDTVNPLYDETLRY-EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLD 127

Query: 234 LCLNLCKHYPVPREEEVWGEEECWQH 259
            CL L        E    G      H
Sbjct: 128 HCLPLHGKISAESE----GHHH-HHH 148

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  131 bits (332), Expect = 2e-37
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 6/129 (4%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWK 318
           G +F +L ++ +++A +VN+ +   L  MD     SDP+IK+ + P+  K K KT V  K
Sbjct: 9   GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRK 67

Query: 319 TLNPIFNEEFAIETK-ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRLRH 374
           TL+P F+E F       T++ +  L  T+   D    +D +G + +  +       ++  
Sbjct: 68  TLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLM 127

Query: 375 WVDMMKYPD 383
             +++  P 
Sbjct: 128 NREIISGPS 136

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  122 bits (309), Expect = 4e-34
 Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHR 168
           S   + LG++  ++ Y+    +  V +  A+GL AMD    TSDP+ K+ ++P  +  H+
Sbjct: 2   SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILP--EKKHK 59

Query: 169 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
           ++T+   +T++P F E  TFY +  T +   +LH  +L  D++   D +GE   PL+ +
Sbjct: 60  VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score =  131 bits (331), Expect = 2e-37
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 318
           G+I LT+  S+++  LIV +  C NLI    +G SDP++++YL PD  +  + KT V  K
Sbjct: 11  GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKD--YGKSNDYLGC--LELCCNSKGDRLRH 374
           TLNP+F++ F     + E+ ++TL + V +      K    LG   + L           
Sbjct: 70  TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ 129

Query: 375 WVDMMKYPDHK 385
           W D+ +     
Sbjct: 130 WYDLTEDSGPS 140

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score =  110 bits (276), Expect = 2e-29
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
             + + LG I+LT+ + S    L V +H  + L A    G SDP+ ++ L+P  + S R 
Sbjct: 4   GSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRR 62

Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRL 226
           +T    +T+NP F +   F SVS  ++  ++L + V +   +       LG+    L   
Sbjct: 63  KTHVSKKTLNPVFDQSFDF-SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score =  129 bits (327), Expect = 1e-36
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 5/134 (3%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK 318
           G++ + L F      LIV ++   +L   +     +P++K+Y  PD   K K +T    K
Sbjct: 8   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 67

Query: 319 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELCCNS-KGDRLRH 374
           TL P +N+ F        E  ++ L IT+WD+     + +++LG + +   +   D   H
Sbjct: 68  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127

Query: 375 WVDMMKYPDHKHEG 388
           W  +  +      G
Sbjct: 128 WYKLQTHDSGPSSG 141

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score =  124 bits (314), Expect = 6e-35
 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 171
           + ++ G + + + +D     L VT+  AK L + +     +P+ K+  +P     ++ RT
Sbjct: 3   SGSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 62

Query: 172 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 226
           KT  +T+ P++++   +  V   +   + L I + D  +      +FLGE    L   
Sbjct: 63  KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 120

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score =  129 bits (325), Expect = 2e-36
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 15/129 (11%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD----------LHKR 309
           G+I L + +      LI+++++  NL+P D+NG+SDPF+K+YL P             + 
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64

Query: 310 KYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 366
           K +T    K+LNP +N+    ++  + +L K+TL +TVWD D   SND+LG   ++L   
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

Query: 367 SKGDRLRHW 375
           S  D    W
Sbjct: 125 SHLDNTPRW 133

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score =  114 bits (286), Expect = 8e-31
 Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 12/122 (9%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP---------LTKTSH 167
           G I+L + YD     L + + +A+ L   D +G SDPF K+ L+P              +
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64

Query: 168 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
           + RTK   +++NPE+++ + + S+S   L  ++L + V D D++  +DFLGE    L+  
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

Query: 227 RP 228
             
Sbjct: 125 SH 126

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  128 bits (324), Expect = 2e-36
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
           G+I  ++ ++ ++  L V ++K   L   D +G SDPF+K+YL PD  K K +T VK K 
Sbjct: 13  GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 71

Query: 320 LNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWV 376
           LNP +NE F  E     ++ ++ L + V D D    ND +G   + L           W 
Sbjct: 72  LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWK 131

Query: 377 DM 378
           D+
Sbjct: 132 DL 133

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  125 bits (316), Expect = 4e-35
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 3/136 (2%)

Query: 109 TSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHR 168
           +S +  NLG I+ +V Y+    +L V + +A+ L A D  GTSDPF K+ L+P     H+
Sbjct: 5   SSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLP--DKKHK 62

Query: 169 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR 227
           L TK   + +NP ++E   F       +  + L++ VLD D++  +D +GE   PLN++ 
Sbjct: 63  LETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVD 122

Query: 228 PHISRDLCLNLCKHYP 243
               +    +L    P
Sbjct: 123 LTQMQTFWKDLKPSGP 138

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  128 bits (323), Expect = 3e-36
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 5/121 (4%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
            K+   L +  +K  L V  ++       + +G  D +++  +       + +T +K + 
Sbjct: 13  PKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69

Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 377
           L+  + E   +     EL   TL +T+   D    +   G   L L   S       W +
Sbjct: 70  LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129

Query: 378 M 378
           +
Sbjct: 130 L 130

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  110 bits (277), Expect = 1e-29
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
           S +      +   + YD     L VT   A      +  G  D + + ++   T +    
Sbjct: 6   SGSWNQAPKLHYCLDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEA- 61

Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
           +T    R ++  + E L    ++E +L   +L + +   D++  H   GE R  L+  
Sbjct: 62  QTALKKRQLHTTWEEGLVL-PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score =  126 bits (319), Expect = 2e-35
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 252 GEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-- 309
            E E     +I + L +  K +   + +I+ +NL  +         I++ + P       
Sbjct: 22  DESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTC 81

Query: 310 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC---CN 366
            ++T     +   +FNE F +      L ++TL + V   D     + LG  ++      
Sbjct: 82  LFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC 141

Query: 367 SKGDRLRHWVDMM 379
             G+R   W +++
Sbjct: 142 RSGERSTRWYNLL 154

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score =  122 bits (307), Expect = 9e-34
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 3/134 (2%)

Query: 95  LKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPF 154
           ++R   +E   +            I++ + YD       + + +   L A+         
Sbjct: 8   VQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVN 67

Query: 155 CKLNLVPL-TKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG- 212
            ++ ++P    T+   RT+    +    F+E     S+S   L  ++L + V   D+   
Sbjct: 68  IRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV-SMSYPALHQKTLRVDVCTTDRSHL 126

Query: 213 HDFLGEARFPLNRL 226
            + LG A+  L  +
Sbjct: 127 EECLGGAQISLAEV 140

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score =  124 bits (314), Expect = 5e-35
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G + + + +D     L VT+  AK L + +     +P+ K+  +P     ++ RTKT  +
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 226
           T+ P++++   +  V   +   + L I + D  +      +FLGE    L   
Sbjct: 65  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 117

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score =  123 bits (311), Expect = 2e-34
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 318
           G++ + L F      LIV ++   +L   +     +P++K+Y  PD   K K +T    K
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64

Query: 319 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELC-CNSKGDRLRH 374
           TL P +N+ F        E  ++ L IT+WD+     + +++LG + +    +  D   H
Sbjct: 65  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124

Query: 375 WVDM 378
           W  +
Sbjct: 125 WYKL 128

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score =  122 bits (307), Expect = 7e-34
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPM-------DSNGFSDPFIKLYLKPDLHKRKYK 312
           G +  +  +      L V +I+  +L P             S+P++K+ L PD  K   +
Sbjct: 13  GMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD-QKNSKQ 71

Query: 313 TGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGD 370
           TGVK KT  P+F E +  E    E  ++TL++TV D D    +  +G   + LC      
Sbjct: 72  TGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK 131

Query: 371 RLRHWVDM 378
               W  +
Sbjct: 132 GGHWWKAL 139

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score =  109 bits (273), Expect = 7e-29
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 11/126 (8%)

Query: 109 TSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAM-------DIHGTSDPFCKLNLVP 161
           +S +   LG +  +  YD     L V +  A+ L               S+P+ K+ L+P
Sbjct: 5   SSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLP 64

Query: 162 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEAR 220
                +  +T    +T  P F E+ TF  +   +   ++L + V+D DK+  H  +G+  
Sbjct: 65  --DQKNSKQTGVKRKTQKPVFEERYTF-EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121

Query: 221 FPLNRL 226
            PL  +
Sbjct: 122 VPLCEV 127

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  118 bits (297), Expect = 3e-32
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 15/137 (10%)

Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 316
             G   L L    + R L++++I+   LI     G  DP++K+ L P+  +    KT   
Sbjct: 12  VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTV 70

Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKD-YGKSNDYLGCLELCCNSKGDRLRHW 375
               +P F+E F    +  +  K  L++TVW++    + +  +GC+          ++  
Sbjct: 71  PDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQSGLIGCMSF-------GVKSL 122

Query: 376 VDMMKYPDHKHEGIHNL 392
           +     PD +  G + L
Sbjct: 123 LT----PDKEISGWYYL 135

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  105 bits (263), Expect = 2e-27
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)

Query: 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 171
           +    G+ +L ++ D+    L + +   KGL +    GT DP+ K++L+P        +T
Sbjct: 9   SHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKT 67

Query: 172 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--HDFLGEARFPLNRL 226
           +T     +P FHE   F  V E D   + L + V +          +G   F +  L
Sbjct: 68  QTVPDCRDPAFHEHFFF-PVQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  115 bits (290), Expect = 4e-31
 Identities = 34/163 (20%), Positives = 67/163 (41%), Gaps = 11/163 (6%)

Query: 125 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP-LTKTSHRLRTKTCLRTINPEFH 183
           ++  T  + V +    GL   DI G SDP+ ++ L   ++     ++TKT  +++NP+++
Sbjct: 3   HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62

Query: 184 EKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHY 242
           E++ F  + +       +   V D+++    DFLG+   PL  L     R       K +
Sbjct: 63  EEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDF 118

Query: 243 PVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNL 285
            +               G + L + +  K  +   N  +   L
Sbjct: 119 VLHPRSHKSRV-----KGYLRLKMTYLPKNGSEDENADQAEEL 156

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  101 bits (254), Expect = 7e-26
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFNEEFAIET 332
           + V +I    L   D  G SDP++++ L   +       +T    K+LNP +NEE     
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69

Query: 333 KITELSKQTLVITVWDKDYGKSNDYLGCLEL------CCNSKGDRLRHWVDMMKYPDHKH 386
                    ++  V+D++    +D+LG +++        N + +R   + D + +P    
Sbjct: 70  LPQR---HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126

Query: 387 E 387
            
Sbjct: 127 S 127

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score =  111 bits (280), Expect = 5e-30
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G + L++ +  +   L + ++   +L+  D     +P++K YL PD HK  K KT +  K
Sbjct: 9   GAVKLSVSY--RNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISRK 65

Query: 319 TLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 375
           T NP FNE           L ++ L ++V   +  + N +LG + L             W
Sbjct: 66  TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKW 125

Query: 376 VDM 378
             +
Sbjct: 126 YQL 128

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score =  111 bits (279), Expect = 7e-30
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
             G+++L+V+Y + T  L + +   K L   D     +P+ K  L+P T  + + +TK  
Sbjct: 7   GSGAVKLSVSYRNGT--LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKIS 63

Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
            +T NP F+E L +   S+  L  + L + VL  +    + FLG    PL   
Sbjct: 64  RKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  111 bits (278), Expect = 1e-29
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 116 LGSIELTVTYDS-TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKT 173
                  +  D   +  + V +    GL   DI G SDP+ ++ L          ++TKT
Sbjct: 5   CAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKT 64

Query: 174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISR 232
             +++NP+++E++ F    +       L   V D+++    DFLG+   PL  L     R
Sbjct: 65  IKKSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120

Query: 233 DLCLNLCKHYPV-PREEEVWGEEECWQHGKIFLTLCF 268
                  K + + PR  +          G + L + +
Sbjct: 121 LERPYTFKDFVLHPRSHKSRV------KGYLRLKMTY 151

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  109 bits (273), Expect = 9e-29
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 260 GKIFLTLCFSTKK-RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVK 316
                 L    +  R + V +I    L   D  G SDP++++ L   ++      +T   
Sbjct: 6   AVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTI 65

Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
            K+LNP +NEE        +     L+  V+D++    +D+LG +++
Sbjct: 66  KKSLNPKWNEEILFRVHPQQ---HRLLFEVFDENRLTRDDFLGQVDV 109

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score =  104 bits (262), Expect = 4e-27
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 317
           G I + +    KK  L V +I+  +L     S     P++K+YL  +     K KT +  
Sbjct: 19  GDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR 76

Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVW-DKDYGKSNDYLGCLE--LCCNSKGDRLRH 374
           KTL+P++ +    +        + L + VW D        ++G  +  L        +  
Sbjct: 77  KTLDPLYQQSLVFD---ESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIG 133

Query: 375 W 375
           W
Sbjct: 134 W 134

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 93.7 bits (233), Expect = 6e-23
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHR 168
           + A   +G I++ +        L V + RA+ L        T  P+ K+ L+       +
Sbjct: 12  TLATPAMGDIQIGMEDK--KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAK 69

Query: 169 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD-DKYG-HDFLGEARFPLNRL 226
            +T+   +T++P + + L F    +     + L ++V  D  +     F+G A+  L  L
Sbjct: 70  KKTRIARKTLDPLYQQSLVF----DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125

Query: 227 RP 228
             
Sbjct: 126 DL 127

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 99.3 bits (248), Expect = 2e-25
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V ++K  +L+  D +G SDPF  L L  D    + +T   +K LNP +N+ F    K 
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLELGND----RLQTHTVYKNLNPEWNKVFTFPIKD 70

Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 385
                  L +TV+D+D  K  D+LG + +   S  D   +   +      +
Sbjct: 71  IH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQ 118

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 95.8 bits (239), Expect = 4e-24
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 10/116 (8%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V + +A  L A D  G SDPFC L L        RL+T T  + +NPE+++  TF  +
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLELGN-----DRLQTHTVYKNLNPEWNKVFTF-PI 68

Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPR 246
            +       L + V D+D     DFLG+   PL  +R        L         +
Sbjct: 69  KDIH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK 121

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 95.5 bits (238), Expect = 4e-24
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 128 TTCSLHVTLHRAKGLR---AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHE 184
           ++    V + RA  +      D+  T DP+ +L +        R RT+     INP ++E
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNE 58

Query: 185 KLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 238
              F            L I ++D +    + LG A F ++ ++    +++    
Sbjct: 59  TFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 109

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 94.3 bits (235), Expect = 1e-23
 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 275 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 331
             V +++ T +      D     DP+++L++       + +T      +NP++NE F   
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEF- 62

Query: 332 TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 377
             +    +  L IT+ D +Y   ++ LG     +     G++      
Sbjct: 63  -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFI 108

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 94.8 bits (236), Expect = 1e-23
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V +   +N+ P    G  DP + +  K +    K KT      LNP++NE    + + 
Sbjct: 9   LRVIVESASNI-PKTKFGKPDPIVSVIFKDE----KKKTKKVDNELNPVWNEILEFDLRG 63

Query: 335 TEL-SKQTLVITVWDKDYGKSNDYLGC--LELCCNSKGDRLRHWVDMMKYPDHKHE 387
             L    +L I V D +    N  +G   + L   +          ++   + K +
Sbjct: 64  IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ 119

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 91.7 bits (228), Expect = 1e-22
 Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 127 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKL 186
            ++  L V +  A  +      G  DP   +      K     +TK     +NP ++E L
Sbjct: 4   GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKK-----KTKKVDNELNPVWNEIL 57

Query: 187 TFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCK 240
            F           SL I+V D +  G +  +G A   L  L    SR L   L  
Sbjct: 58  EFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS 112

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 92.0 bits (229), Expect = 1e-22
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 9/121 (7%)

Query: 270 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 329
           ++   + + ++   NL   D     DPF K+ +      + + T     TL+P +N+ + 
Sbjct: 2   SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS--GQCHSTDTVKNTLDPKWNQHYD 59

Query: 330 IETKITELSKQTLVITVWDKDYGKSND---YLGCLELCCNSKGDRLRHWVDMMKYPDHKH 386
           +          ++ I+VW+           +LGC+ L  N+           +       
Sbjct: 60  LYVG----KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP 115

Query: 387 E 387
            
Sbjct: 116 S 116

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 89.4 bits (222), Expect = 7e-22
 Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 22/145 (15%)

Query: 127 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKL 186
           S    + +T+  AK L   D     DPF K+ +    +      T T   T++P++++  
Sbjct: 2   SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCH---STDTVKNTLDPKWNQHY 58

Query: 187 TFYSVSETDLSLQSLHILVLDDDKYGHD----FLGEARFPLNRLRPH-ISRDLCLNLCKH 241
             Y          S+ I V +  K        FLG  R   N +     +    L+LCK 
Sbjct: 59  DLYVGKT-----DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL 113

Query: 242 YPVPREEEVWGEEECWQHGKIFLTL 266
            P          +     G+I ++L
Sbjct: 114 NP---------SDTDAVRGQIVVSL 129

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 88.9 bits (221), Expect = 1e-21
 Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 24/139 (17%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYS 190
           L V L  AKGL   D     DP+ +L      +     ++         PE++E   F +
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ-----KSNVAEGMGTTPEWNETFIF-T 65

Query: 191 VSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEE 249
           VSE       L   + D D     D +GEA  PL  +    S          Y V ++EE
Sbjct: 66  VSEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTA-----YNVVKDEE 117

Query: 250 VWGEEECWQHGKIFLTLCF 268
                     G+I++ L F
Sbjct: 118 Y--------KGEIWVALSF 128

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 86.6 bits (215), Expect = 7e-21
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V L+    L   D     DP+++L  +      +     +     P +NE F     +
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ---DQKSNVAEGMGTTPEWNETFIF--TV 66

Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLEL 363
           +E + + L   ++DKD G  +D +G   +
Sbjct: 67  SEGTTE-LKAKIFDKDVGTEDDAVGEATI 94

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 87.2 bits (216), Expect = 8e-21
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 18/112 (16%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           + + ++    L   D  G SDP++ + +     K K +T   +  LNP++ E F  E   
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVG----KTKKRTKTIYGNLNPVWEENFHFECH- 73

Query: 335 TELSKQTLVITVWDKDYGK-----------SNDYLGCLELCCNSKGDRLRHW 375
              S   + + V D+D              S+D+LG   +   +    +  W
Sbjct: 74  --NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVW 123

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 84.5 bits (209), Expect = 8e-20
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 44/157 (28%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           + +T+  A+GL+A D  G+SDP+  + +        + RTKT    +NP + E   F   
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGK-----TKKRTKTIYGNLNPVWEENFHFECH 73

Query: 192 SETDLSLQSLHILVLDDDKYG------------HDFLGEARFPLNRLRPHISRDLCLNLC 239
           + +D     + + VLD+D                DFLG+    +  L             
Sbjct: 74  NSSD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL------------- 116

Query: 240 KHYPVPREEEVW-----GEEECWQHGKIFLTLCFSTK 271
                  E +VW       ++    G I L +    K
Sbjct: 117 -----SGEMDVWYNLDKRTDKSAVSGAIRLHISVEIK 148

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 80.3 bits (198), Expect = 4e-18
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L + +I         +     P++++ +      +  KT     T +P + +   +    
Sbjct: 38  LQITVISAKLKENKKNWFGPSPYVEVTVD----GQSKKTEKCNNTNSPKWKQPLTVIVT- 92

Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYP 382
                  L   VW     KS+  LG   L            ++ +   
Sbjct: 93  ---PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVT 137

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 78.0 bits (192), Expect = 3e-17
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 11/105 (10%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L +T+  AK            P+ ++ +   +K     +T+ C  T +P++ + LT   V
Sbjct: 38  LQITVISAKLKENKKNWFGPSPYVEVTVDGQSK-----KTEKCNNTNSPKWKQPLTV-IV 91

Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 235
           +        LH  V           LG A   +       +  L 
Sbjct: 92  TPVS----KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLE 132

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 83.5 bits (205), Expect = 2e-17
 Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 11/179 (6%)

Query: 127 STTCSLHVTLHRAKGLR---AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH 183
             +    V + RA  +      D+  T DP+ +L +   T    R RT+     INP ++
Sbjct: 15  QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWN 72

Query: 184 EKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYP 243
           E   F            L I ++D +    + LG A F ++ ++    +++     +   
Sbjct: 73  ETFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTE 129

Query: 244 VPREEEVWGEEECWQHGKIFLTLC---FSTKKRALIVNLIKCTNLIPMDSNGFSDPFIK 299
           +  E  +           + L      F  +++  I   +K            S   + 
Sbjct: 130 MVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLHSARDVP 188

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 76.5 bits (187), Expect = 3e-15
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 275 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 331
             V +++ T +      D     DP+++L++       + +T      +NP++NE F   
Sbjct: 20  FTVVVLRATKVTKGAFGDMLDTPDPYVELFI-STTPDSRKRTRHFNNDINPVWNETFEF- 77

Query: 332 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN 391
             +    +  L IT+ D +Y   ++ LG      +S     +  V  +     +     +
Sbjct: 78  -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 135

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 75.8 bits (186), Expect = 1e-16
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 34/152 (22%)

Query: 129 TCSLHVTLHRAKGLRAMDI----------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI 178
              L V +  A GL+              H   DP+  +++          +T T  +T 
Sbjct: 28  NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV----DQVRVGQTSTKQKTN 83

Query: 179 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLN 237
            P ++E+    +V++       L + V  +   G   F+                     
Sbjct: 84  KPTYNEEFCA-NVTDG----GHLELAVFHETPLGYDHFVANCTLQFQ------------E 126

Query: 238 LCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 269
           L +        E W + E    GK+F+ +  +
Sbjct: 127 LLRTTGASDTFEGWVDLE--PEGKVFVVITLT 156

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 73.9 bits (181), Expect = 5e-16
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 17/99 (17%)

Query: 275 LIVNLIKCTNLIPMD----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF 324
           L V + +   L P             +   DP++ + +      R  +T  K KT  P +
Sbjct: 31  LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD---QVRVGQTSTKQKTNKPTY 87

Query: 325 NEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
           NEEF             L + V+ +     + ++    L
Sbjct: 88  NEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTL 122

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 73.3 bits (180), Expect = 5e-16
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 37/151 (24%)

Query: 131 SLHVTLHRAKGLRAMDI-----------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTIN 179
            L + +  A  L+                   DP+  LN+      S   +T T  +T +
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTNS 62

Query: 180 PEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNL 238
           P +H++     V       + + + V  D   G  DF+         L  + SR      
Sbjct: 63  PAWHDEFVT-DVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF---- 113

Query: 239 CKHYPVPREEEVWGEEECWQHGKIFLTLCFS 269
                     E W + E    GK+++ +  S
Sbjct: 114 ----------EDWIDLE--PEGKVYVIIDLS 132

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 72.2 bits (177), Expect = 2e-15
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 22/118 (18%)

Query: 275 LIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPI 323
           L + + +  +L P                  DP+I L +      R  +T  K KT +P 
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD---DSRIGQTATKQKTNSPA 64

Query: 324 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS----KGDRLRHWVD 377
           +++EF  +      + + + + V+       +D++    +               W+D
Sbjct: 65  WHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 65.3 bits (158), Expect = 1e-11
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 6/125 (4%)

Query: 235 CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 294
           C   C+        +    E                    L+V+  +  +L    +    
Sbjct: 356 CSRPCRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYT---- 411

Query: 295 DPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354
                 YLK     ++++TGV W   NP + ++   E  +   +   L + VWD DYG  
Sbjct: 412 -TATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFEN-VLLSTGGPLRVQVWDADYGWD 469

Query: 355 NDYLG 359
           +D LG
Sbjct: 470 DDLLG 474

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 53.4 bits (127), Expect = 7e-08
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY 189
             L V+  RA+ L        +D + K+            RT       NP + +K+ F 
Sbjct: 394 AHLVVSNFRAEHLWGDYTT-ATDAYLKVFF-----GGQEFRTGVVWNNNNPRWTDKMDFE 447

Query: 190 SVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPL 223
           +V  +      L + V D D     D LG      
Sbjct: 448 NVLLST--GGPLRVQVWDADYGWDDDLLGSCDRSP 480

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V + +AK   A +     + +  L +      + +  T   +R   P + +   F   
Sbjct: 7   LCVGVKKAKFDGAQE---KFNTYVTLKV-----QNVKSTTIA-VRGSQPSWEQDFMF--- 54

Query: 192 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS 231
               L    L + V +        +G    PL  +R    
Sbjct: 55  EINRLD-LGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNE 93

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 50.7 bits (121), Expect = 4e-08
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 12/89 (13%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V + K       +     + ++ L ++      K  T    +   P + ++F  E  I
Sbjct: 7   LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVKSTTIAV-RGSQPSWEQDFMFE--I 56

Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLEL 363
             L    L + VW+K     +  +G + +
Sbjct: 57  NRLDLG-LTVEVWNKGLIW-DTMVGTVWI 83

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 4e-07
 Identities = 48/387 (12%), Positives = 99/387 (25%), Gaps = 128/387 (33%)

Query: 105 EYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK 164
           + FV      N   +   +  +    S+   ++  +  R   ++  +  F K N V   +
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAKYN-VSRLQ 135

Query: 165 TSHRLRT--------------------KTCL-------RTINPEFHEK---LTFYSVSET 194
              +LR                     KT +         +  +   K   L   + +  
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 195 DL---SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPRE---- 247
           +     LQ L   +  +     D     +  ++ ++  + R     L K  P        
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-----LLKSKPYENCLLVL 250

Query: 248 EEVWGEEECWQ----HGKIFLT---------LCFSTKKRALIVN-------------LIK 281
             V    + W       KI LT         L  +T     + +             L+K
Sbjct: 251 LNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 282 CTNLIPMD-----SNGFSDPF----IKLYLKPDLHKRKYKTGVKWKT------------- 319
             +  P D          +P     I   ++  L          WK              
Sbjct: 310 YLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESS 362

Query: 320 ---LNP-----IFNEEFAI---ETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 368
              L P     +F +  ++      I       L + +W       +D +  +       
Sbjct: 363 LNVLEPAEYRKMF-DRLSVFPPSAHIPT---ILLSL-IWFDV--IKSDVMVVVNKLHK-Y 414

Query: 369 GDRLRHWVDMMKYPDHKHEGIHNLSIK 395
               +   +           I ++ ++
Sbjct: 415 SLVEKQPKESTIS-------IPSIYLE 434

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V + +AK   A +     + +  L +  +  T+  +R         P + +   F  +
Sbjct: 16  LCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAVRGS------QPSWEQDFMF-EI 65

Query: 192 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 227
           +  DL L    + V +        +G    PL  +R
Sbjct: 66  NRLDLGLT---VEVWNKGLIWDTMVGTVWIPLRTIR 98

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 25/114 (21%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V + K       +     + ++ L ++      +  T +  +   P + ++F  E   
Sbjct: 16  LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVESTT-IAVRGSQPSWEQDFMFEINR 67

Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEG 388
            +L    L + VW+K     +  +G               W+ +        EG
Sbjct: 68  LDLG---LTVEVWNKGLIW-DTMVG-------------TVWIPLRTIRQSNEEG 104

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 127 STTCSLHVTLHRAKGLRAMDIHGTS--DPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFH 183
                L V +   + L  ++ +  S  DP   + +  + + +   +T        NP + 
Sbjct: 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 553

Query: 184 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228
            +  F  V+  DL+L  +  +V D D     DF+G++  P N L+ 
Sbjct: 554 MEFEF-EVTVPDLAL--VRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 271 KKRALIVNLIKCTNLIPMDSNGFS--DPFIKLYL---KPDLHKRKYKTGVKWKTLNPIFN 325
           +   L V +I    L  ++ N  S  DP + + +     D   R+    +     NP ++
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAV-ITNNGFNPRWD 553

Query: 326 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDR 371
            EF  E  + +L+   +   V D D    ND++G   +      +G R
Sbjct: 554 MEFEFEVTVPDLA--LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR 599

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%)

Query: 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 190
           +L V L     LR     G +D   K+     +  S  L     +   +  F      + 
Sbjct: 22  ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFR-----WP 71

Query: 191 VSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL--RPHISRDLCLNLCKHYPVP 245
           V+ +    + L I + +  K   +  +G  R  L ++     +     L    +  + 
Sbjct: 72  VASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.96
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.96
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.96
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.96
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.91
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.91
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.91
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.91
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.91
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.9
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.9
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.9
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.9
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.9
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.9
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.9
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.9
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.9
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.89
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.89
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.89
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.89
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.89
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.89
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.89
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.89
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.89
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.88
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.88
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.88
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.88
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.88
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.88
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.88
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.88
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.88
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.88
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.88
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.87
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.87
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.86
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.86
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.86
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.86
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.85
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.84
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.83
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.82
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.82
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.82
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.82
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.82
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.81
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.8
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.8
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.78
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.78
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.77
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.76
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.76
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.76
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.76
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.76
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.75
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.75
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.72
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.72
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.71
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.68
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.66
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.61
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.6
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.6
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.58
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.57
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.54
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.54
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.54
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.54
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.54
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.53
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.53
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.52
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.52
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.41
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.27
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.26
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.25
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.22
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.15
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.13
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.12
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.94
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.9
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.36
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.29
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	95.25
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	94.8
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	94.7
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	93.73
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	93.13
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	92.71
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	92.24
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	90.7
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	90.09
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	87.44
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	86.5
2qzq_A	152	Axin interactor, dorsalization associated protein;	82.66

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=7.3e-50  Score=374.10  Aligned_cols=269  Identities=33%  Similarity=0.534  Sum_probs=243.2

Q ss_pred             CcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCc
Q psy12136        114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE  193 (399)
Q Consensus       114 ~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~  193 (399)
                      +.+|+|++++.|++..+.|.|+|++|++|++++..+.+||||+|++.++..  .+++|++++++.||+|||+|.| .++.
T Consensus         3 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~wne~f~f-~v~~   79 (284)
T 2r83_A            3 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTF-KVPY   79 (284)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTT--SCEECCCCCSCSSCEEEEEEEE-CCCG
T ss_pred             cceeEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCC--ceEeCCcccCCCCCeeCceEEE-Eech
Confidence            468999999999999999999999999999999999999999999987543  5789999999999999999999 5877


Q ss_pred             ccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeeccc
Q psy12136        194 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKK  272 (399)
Q Consensus       194 ~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~  272 (399)
                      .++....|.|+|||++..++ ++||++.++|.++..+.....|+.|.....          ......|+|.+++.|.|..
T Consensus        80 ~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~----------~~~~~~G~i~l~l~~~p~~  149 (284)
T 2r83_A           80 SELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK----------EEQEKLGDICFSLRYVPTA  149 (284)
T ss_dssp             GGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS----------CCCCCCCEEEEEEEEETTT
T ss_pred             HHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccc----------ccccccccEEEEEEecCcC
Confidence            77777899999999999887 999999999999988877788888864211          1124679999999999999


Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      +.|.|.|++|++|+.++.+|.+||||++++.+++.. .+++|++++++.||+|||+|.|.+...++....|.|+|||++.
T Consensus       150 ~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~  229 (284)
T 2r83_A          150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK  229 (284)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCS
T ss_pred             CceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCC
Confidence            999999999999999999999999999999865433 6889999999999999999999998888877899999999999


Q ss_pred             CCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      ++++++||++.|++++.+.+.+||++|+.+|++.+++||+|++.
T Consensus       230 ~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          230 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             CCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            99999999999999999999999999999999999999999875

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=4.6e-49  Score=370.63  Aligned_cols=270  Identities=30%  Similarity=0.471  Sum_probs=236.0

Q ss_pred             CcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCc
Q psy12136        114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE  193 (399)
Q Consensus       114 ~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~  193 (399)
                      ..+|+|++++.|+...+.|.|+|++|++|++++..+.+||||+|++.+++.  .++||+++++++||+|||+|.| .++.
T Consensus         4 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f-~v~~   80 (296)
T 1dqv_A            4 APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK--KKFQTKVHRKTLNPIFNETFQF-SVPL   80 (296)
T ss_dssp             CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTT--SCEECCCCCSCSSCEEEEEEEE-ECCG
T ss_pred             CeeeEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCC--eeEeCCccCCCCCCcEeeEEEE-EecH
Confidence            468999999999999999999999999999999999999999999976543  7889999999999999999999 5877


Q ss_pred             ccCCCceEEEEEEEcCCCCC-cceeeEEec-CcccCC-CcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        194 TDLSLQSLHILVLDDDKYGH-DFLGEARFP-LNRLRP-HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       194 ~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~-l~~l~~-~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      .++....|+|+|||++..++ ++||++.++ +.++.. ......|+.|...           .......|+|.+++.|.+
T Consensus        81 ~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~-----------~~~~~~~G~i~vsl~y~~  149 (296)
T 1dqv_A           81 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG-----------GSEKADLGELNFSLCYLP  149 (296)
T ss_dssp             GGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC-----------SSCCSCCCEEEEEEEEET
T ss_pred             HHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccc-----------cccccccceEEEEEEecc
Confidence            77777899999999999987 999999996 444432 2334456666431           011246899999999999


Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeC
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK  349 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  349 (399)
                      ..+.|.|.|++|+||+.++..|.+||||++++.+++.. .+++|++++++.||+|||+|.|.+...++....|.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            99999999999999999999999999999999864443 78999999999999999999999987777677899999999


Q ss_pred             CCCCCCeeeEEEEEccCCCCC-cchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136        350 DYGKSNDYLGCLELCCNSKGD-RLRHWVDMMKYPDHKHEGIHNLSIKPL  397 (399)
Q Consensus       350 ~~~~~d~~lG~~~i~l~~~~~-~~~~w~~l~~~p~~~~~~Wh~L~~~~~  397 (399)
                      +.++++++||++.|++++.+. +.+||++|+.+|++++++||+|++...
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~~  278 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKT  278 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBCC-
T ss_pred             CCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCccc
Confidence            999999999999999998876 899999999999999999999998754

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.96  E-value=2.7e-29  Score=208.80  Aligned_cols=136  Identities=38%  Similarity=0.637  Sum_probs=127.6

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      +|+|.+++.|.+..+.|.|+|++|++|+..+..|.+||||++++.+.... .+++|++++++.||+|||+|.|.+...++
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l   81 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKL   81 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhc
Confidence            69999999999999999999999999999998999999999999865444 68999999999999999999999987777


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      ....|.|+|||++.++++++||++.|++++.+.+.+||++|+.+|++.+++||+|+|
T Consensus        82 ~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~p  138 (138)
T 3n5a_A           82 RETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLKA  138 (138)
T ss_dssp             GGEEEEEEEEECCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CceEEEEEEEECCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCCCeEEEEeecCC
Confidence            778999999999999899999999999999889999999999999999999999986

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.96  E-value=2.1e-28  Score=207.22  Aligned_cols=139  Identities=28%  Similarity=0.474  Sum_probs=121.5

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEecc
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  334 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~  334 (399)
                      ....|+|.+++.|.+..+.|.|+|++|+||+.++..|.+||||++++.++... .+++|++++++.||+|||+|.|.+..
T Consensus        13 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   92 (153)
T 1w15_A           13 PSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC   92 (153)
T ss_dssp             ---CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCS
T ss_pred             CccccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCH
Confidence            45789999999999999999999999999999998999999999999864433 48899999999999999999999987


Q ss_pred             CcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       335 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      .++....|.|+|||++.++++++||++.|++++.+.+..||++|+..|++.+++||.|++
T Consensus        93 ~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~p~~~~~~Wh~L~~  152 (153)
T 1w15_A           93 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD  152 (153)
T ss_dssp             SSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             HHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCchHHHHHHHHHhCCCCeeeecccccc
Confidence            777778999999999999899999999999999888999999999999999999999986

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.96  E-value=3.3e-28  Score=207.32  Aligned_cols=140  Identities=34%  Similarity=0.545  Sum_probs=129.9

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEecc
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  334 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~  334 (399)
                      ....|+|.+++.|.+..+.|.|+|++|+||+.++.+|.+||||++++.+++.. .+++|++++++.||+|||+|.|.+..
T Consensus         8 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   87 (159)
T 1tjx_A            8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF   87 (159)
T ss_dssp             GGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred             cCcCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCH
Confidence            46789999999999999999999999999999999999999999999864433 68999999999999999999999987


Q ss_pred             CcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       335 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      .++....|.|+|||++.++++++||++.|++.+.+.+++||++|+.+|++.+++||+|.++
T Consensus        88 ~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~  148 (159)
T 1tjx_A           88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (159)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             HHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence            7777789999999999999999999999999999999999999999999999999999875

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.96  E-value=6.5e-28  Score=206.99  Aligned_cols=142  Identities=49%  Similarity=0.829  Sum_probs=128.8

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEecc
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  334 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~  334 (399)
                      ....|+|.+++.|.+..+.|.|+|++|+||+.++.+|.+||||++++.+..++ .+++|++++++.||+|||+|.|.+..
T Consensus        20 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   99 (166)
T 2cm5_A           20 IEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH   99 (166)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred             cCccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcch
Confidence            46789999999999999999999999999999999999999999999875444 79999999999999999999999987


Q ss_pred             CcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136        335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  397 (399)
Q Consensus       335 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~  397 (399)
                      .++....|.|+|||++.++++++||++.|++.+.+.+.+||++|+..|++.+++||.|.++..
T Consensus       100 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~~~~  162 (166)
T 2cm5_A          100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENH  162 (166)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC---
T ss_pred             HhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCCccc
Confidence            777778999999999999999999999999999888999999999999999999999998754

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=2.3e-24  Score=182.29  Aligned_cols=126  Identities=18%  Similarity=0.218  Sum_probs=109.9

Q ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCceEecccccCCCCCeecceEEecee
Q psy12136        113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       113 ~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      ....|+|++++.|++..+.|.|.|++|+||++++..|.+||||++++.+... ...++||+++++++||+|||+|.| .+
T Consensus        26 ~~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f-~v  104 (155)
T 2z0u_A           26 AVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV-SM  104 (155)
T ss_dssp             --CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEE-EC
T ss_pred             cCCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEE-Ec
Confidence            3567999999999999999999999999999999999999999999986321 234899999999999999999999 58


Q ss_pred             CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCC-CcceeEEEeec
Q psy12136        192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP-HISRDLCLNLC  239 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~-~~~~~~~~~L~  239 (399)
                      +..++....|+|+|||++..++ ++||++.++|.++.. +.....|+.|.
T Consensus       105 ~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          105 SYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             CHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            8777767899999999999988 999999999999953 56677888774

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=5.3e-24  Score=180.05  Aligned_cols=128  Identities=17%  Similarity=0.189  Sum_probs=109.6

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEec
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETK  333 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~  333 (399)
                      ....|+|++++.|.+..+.|.|.|++|+||++++.+|.+||||++++.+....  .++||+++++++||+|||+|.|.+.
T Consensus        26 ~~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~  105 (155)
T 2z0u_A           26 AVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMS  105 (155)
T ss_dssp             --CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECC
T ss_pred             cCCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcC
Confidence            35689999999999999999999999999999999999999999999864322  5899999999999999999999998


Q ss_pred             cCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        334 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       334 ~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      ..++....|.|+|||++.++++++||++.|++.+..           .......+||.|++
T Consensus       106 ~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~-----------~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          106 YPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC-----------RSGERSTRWYNLLS  155 (155)
T ss_dssp             HHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSC-----------TTCCCEEEEEEEBC
T ss_pred             HHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHcc-----------CCCCccccceEccC
Confidence            766767899999999999999999999999998742           11234567777654

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=1.5e-23  Score=174.65  Aligned_cols=128  Identities=32%  Similarity=0.530  Sum_probs=113.0

Q ss_pred             CCCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEece
Q psy12136        111 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS  190 (399)
Q Consensus       111 ~~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~  190 (399)
                      ...+.+|+|++++.|.+..+.|.|+|++|++|+..+..+.+||||+|++.++.  ..++||++++++.||+|||+|.|..
T Consensus         7 ~~~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~wne~f~f~~   84 (141)
T 2d8k_A            7 GSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDK--KHKLETKVKRKNLNPHWNETFLFEG   84 (141)
T ss_dssp             CCCCCCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCC--SSEEECCCCTTCSSCCCCEEEEECS
T ss_pred             CCCceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCC--CccEeCceEcCCCCCccccEEEECc
Confidence            34456899999999999999999999999999999988999999999998644  3689999999999999999999943


Q ss_pred             eCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        191 VSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       191 v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ++.+++....|.|+|||++..++ ++||++.++|.++..+.....|++|..
T Consensus        85 ~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  135 (141)
T 2d8k_A           85 FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP  135 (141)
T ss_dssp             CCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred             cCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence            45555556889999999999887 999999999999998877888988865

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.91  E-value=1e-23  Score=175.93  Aligned_cols=130  Identities=39%  Similarity=0.728  Sum_probs=114.0

Q ss_pred             CCCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEece
Q psy12136        111 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS  190 (399)
Q Consensus       111 ~~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~  190 (399)
                      .....+|+|++++.|++..++|.|+|++|++|++.+..+.+||||+|++.++.....++||++++++.||+|||+|.|..
T Consensus        10 ~~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~   89 (142)
T 2chd_A           10 DQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHG   89 (142)
T ss_dssp             ----CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEES
T ss_pred             CCCCccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcc
Confidence            34567899999999999999999999999999999989999999999998755456799999999999999999999943


Q ss_pred             eCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        191 VSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       191 v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ++..++....|.|+|||++..++ ++||++.++|.++..+.....|+.|+.
T Consensus        90 ~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A           90 ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             CCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             cCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            66665555789999999999988 999999999999999888999999864

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.91  E-value=5.9e-24  Score=178.72  Aligned_cols=128  Identities=27%  Similarity=0.436  Sum_probs=114.9

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEece
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS  190 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~  190 (399)
                      ..+.+|+|++++.|.+..++|.|+|++|+||++.+ ..+.+||||+|++.++.....++||+++++++||+|||+|.| .
T Consensus         5 ~~~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~   83 (148)
T 3fdw_A            5 NIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY-E   83 (148)
T ss_dssp             -CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEE-E
T ss_pred             CCccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEE-E
Confidence            34678999999999999999999999999999988 578899999999988665567999999999999999999999 5


Q ss_pred             eCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        191 VSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       191 v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ++..++....|.|+|||++..++ ++||++.++|.++..+.....|++|..
T Consensus        84 v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  134 (148)
T 3fdw_A           84 IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHG  134 (148)
T ss_dssp             CCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBC
T ss_pred             eChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcC
Confidence            88777767889999999999988 999999999999987777788998875

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.90  E-value=2.5e-23  Score=170.58  Aligned_cols=124  Identities=22%  Similarity=0.350  Sum_probs=106.4

Q ss_pred             cceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136        115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET  194 (399)
Q Consensus       115 ~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~  194 (399)
                      .+|+|++++.|++..++|.|+|++|+||++.+..+.+||||+|++.+++....++||++++++.||+|||+|.|..++.+
T Consensus         3 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   82 (129)
T 2bwq_A            3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR   82 (129)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred             eeEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence            57999999999999999999999999999999999999999999988665578999999999999999999999535556


Q ss_pred             cCCCceEEEEEEEcCCCC---CcceeeEEecCcccCCCcceeEEEeec
Q psy12136        195 DLSLQSLHILVLDDDKYG---HDFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       195 ~l~~~~L~~~V~d~~~~~---~~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      ++....|.|+|||++..+   +++||++.++|.++.... ...|++|+
T Consensus        83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           83 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            666789999999999886   589999999999987654 66787763

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.90  E-value=4.4e-23  Score=174.17  Aligned_cols=126  Identities=32%  Similarity=0.533  Sum_probs=112.5

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      ....+|+|++++.|++..++|.|+|++|+||+..+..+.+||||+|++.++..  .++||++++++.||+|||+|.| .+
T Consensus        24 ~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f-~v  100 (152)
T 1rsy_A           24 EEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTF-KV  100 (152)
T ss_dssp             --CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCC--SCEECCCCTTCSSCEEEEEEEE-CC
T ss_pred             CCCCceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCC--ceEeccccCCCCCCcCcccEEE-ee
Confidence            34568999999999999999999999999999999899999999999987543  6889999999999999999999 57


Q ss_pred             CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ...++....|.|+|||++..++ ++||++.++|.++..+.....|++|..
T Consensus       101 ~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          101 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             CHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             cHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            7766667899999999999887 999999999999988877888988864

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=173.55  Aligned_cols=127  Identities=27%  Similarity=0.430  Sum_probs=110.5

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      ....+|+|++++.|.+..++|.|+|++|+||++.+..+ +||||+|++.++.....+++|+++++++||+|||+|.| .+
T Consensus         6 ~~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~v   83 (142)
T 2dmg_A            6 SGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF-SV   83 (142)
T ss_dssp             CSCSSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEE-CC
T ss_pred             CCCCcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEE-Ee
Confidence            34568999999999999999999999999999999889 99999999987655567899999999999999999999 57


Q ss_pred             CcccCCCceEEEEEEEcCCCC--C-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        192 SETDLSLQSLHILVLDDDKYG--H-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~--~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      +..++....|.|+|||++..+  + ++||++.|+|.++........|+.|..
T Consensus        84 ~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~  135 (142)
T 2dmg_A           84 SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE  135 (142)
T ss_dssp             CHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred             cHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence            766665679999999999875  4 699999999999987666666766653

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.90  E-value=3.1e-23  Score=173.20  Aligned_cols=125  Identities=32%  Similarity=0.523  Sum_probs=113.2

Q ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeC
Q psy12136        113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS  192 (399)
Q Consensus       113 ~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~  192 (399)
                      .+.+|+|++++.|.+..++|.|+|++|++|+..+..+.+||||+|++.++..  .+++|++++++.||+|||+|.| .++
T Consensus        17 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f-~v~   93 (143)
T 3f04_A           17 VEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTF-KVP   93 (143)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCS--CCEECCCCCSCSSCEEEEEEEE-CCC
T ss_pred             ccCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCC--ccEECccCcCCCCCcCcCeEEE-eec
Confidence            3568999999999999999999999999999999889999999999987543  6899999999999999999999 577


Q ss_pred             cccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        193 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       193 ~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ..++....|.|+|||++..++ ++||++.++|.++..+.....|++|+.
T Consensus        94 ~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             HHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             HhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            777767899999999999987 999999999999998888889998863

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.90  E-value=1.5e-23  Score=176.16  Aligned_cols=130  Identities=29%  Similarity=0.464  Sum_probs=112.2

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEec
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK  333 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~  333 (399)
                      ....|+|.+++.|.+..+.|.|+|++|+||+.++ ..+.+||||++++.+.... .+++|++++++.||+|||+|.|.+.
T Consensus         6 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~   85 (148)
T 3fdw_A            6 IFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIP   85 (148)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECC
T ss_pred             CccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeC
Confidence            3578999999999999999999999999999888 5789999999999876543 6999999999999999999999998


Q ss_pred             cCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136        334 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  397 (399)
Q Consensus       334 ~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~  397 (399)
                      ..++....|.|+|||++.++++++||++.|++....            .+....+||+|+++..
T Consensus        86 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~L~~~~~  137 (148)
T 3fdw_A           86 ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWK------------LDKKLDHCLPLHGKIS  137 (148)
T ss_dssp             STTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHH------------HHCCSEEEEECBCC--
T ss_pred             hhHhCceEEEEEEEECCCCcCCcEEEEEEEEccccc------------ccCCccceEECcCccc
Confidence            877777899999999999989999999999987632            1124568888888764

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.90  E-value=9.7e-23  Score=169.14  Aligned_cols=123  Identities=19%  Similarity=0.237  Sum_probs=108.6

Q ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeC
Q psy12136        113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS  192 (399)
Q Consensus       113 ~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~  192 (399)
                      ...+|+|++++.|+...++|.|+|++|+   +++..+.+||||+|++.++.. ..++||+++++++||+|||+|.| .++
T Consensus         9 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~-~~~~kT~v~~~tlnP~wnE~f~f-~v~   83 (138)
T 1wfm_A            9 WNQAPKLHYCLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTG-SVEAQTALKKRQLHTTWEEGLVL-PLA   83 (138)
T ss_dssp             CSSCCEEEEEEEEETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTE-EEEEECCCCCCCSSEECSSCEEE-ECC
T ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCC-cccEecccCcCCCCCcCCceEEE-Eec
Confidence            3467999999999999999999999999   367788999999999986322 35789999999999999999999 588


Q ss_pred             cccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        193 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       193 ~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ..++....|+|+|||++..++ ++||++.++|.++..+.....|+.|..
T Consensus        84 ~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~  132 (138)
T 1wfm_A           84 EEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             TTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             HHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence            888877899999999999988 999999999999987677788988864

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.90  E-value=4e-23  Score=174.58  Aligned_cols=128  Identities=25%  Similarity=0.435  Sum_probs=108.7

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEecc
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  334 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~  334 (399)
                      ....|++.+++.|.+..+.|.|+|++|+||+.++ .|.+||||++++.+.... .+++|++++++.||+|||+|.|.+..
T Consensus        10 ~~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   88 (153)
T 3fbk_A           10 HKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE   88 (153)
T ss_dssp             ---CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCG
T ss_pred             cCCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEeccc
Confidence            4689999999999999999999999999999988 689999999999865544 88999999999999999999999976


Q ss_pred             CcccccEEEEEEEeCCCCCC-CeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCC
Q psy12136        335 TELSKQTLVITVWDKDYGKS-NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP  396 (399)
Q Consensus       335 ~~l~~~~l~i~V~d~~~~~~-d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~  396 (399)
                      .++. ..|.|+|||++.+++ +++||++.|++.+           +..|+....+||+|+++.
T Consensus        89 ~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~-----------l~~~~~~~~~W~~L~~~~  139 (153)
T 3fbk_A           89 EDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKS-----------LLTPDKEISGWYYLLGEH  139 (153)
T ss_dssp             GGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHH-----------HTC--CCEEEEEECBCTT
T ss_pred             HHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHH-----------hcCCCCccccEEECCChh
Confidence            6665 459999999998876 8999999999865           233566788999998764

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.90  E-value=8.5e-23  Score=169.49  Aligned_cols=127  Identities=28%  Similarity=0.552  Sum_probs=110.9

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEece
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS  190 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~  190 (399)
                      ....+|+|++++.|++..+.|.|+|++|++|++.+.. +.+||||+|++.+++.  .++||++++++.||+|||+|.|..
T Consensus         4 ~~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~~   81 (138)
T 1ugk_A            4 GSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLDPAFDETFTFYG   81 (138)
T ss_dssp             CCCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTC--SEEECCCCSSCSSCEEEEEEEEEC
T ss_pred             CCCccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCC--ceEecCcCcCCCCCcEeeEEEEcC
Confidence            3456899999999999999999999999999999985 8899999999987543  799999999999999999999944


Q ss_pred             eCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcc-eeEEEeecc
Q psy12136        191 VSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS-RDLCLNLCK  240 (399)
Q Consensus       191 v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~-~~~~~~L~~  240 (399)
                      ++.+++....|.|+|||++..++ ++||++.++|.++..+.. ...|++|.+
T Consensus        82 v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             CCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             cCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            77777767899999999999987 999999999999987644 356788864

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.90  E-value=7.8e-23  Score=172.62  Aligned_cols=127  Identities=34%  Similarity=0.549  Sum_probs=111.1

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccC
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT  335 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~  335 (399)
                      ....|+|.+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.++. +.+++|++++++.||+|||+|.|.+...
T Consensus        25 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~  103 (152)
T 1rsy_A           25 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYS  103 (152)
T ss_dssp             -CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC-CSCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred             CCCceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCC-CceEeccccCCCCCCcCcccEEEeecHH
Confidence            357899999999999999999999999999999989999999999998643 3788999999999999999999999766


Q ss_pred             cccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        336 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       336 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      ++....|.|+|||++.++++++||++.|++.+..            .+..+.+||+|++.
T Consensus       104 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD------------FGHVTEEWRDLQSA  151 (152)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCC------------CSSCEEEEEECBCC
T ss_pred             HcCCCEEEEEEEECCCCCCCcEEEEEEEEchhcc------------CCCCcceEEECCCC
Confidence            6667899999999999989999999999998753            23456788888765

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.89  E-value=6e-23  Score=170.98  Aligned_cols=127  Identities=21%  Similarity=0.351  Sum_probs=111.8

Q ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeC
Q psy12136        113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS  192 (399)
Q Consensus       113 ~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~  192 (399)
                      ...+|+|++++.|.+..++|.|+|++|++|+..+..+.+||||+|++.++.....++||++++++.||+|||+|.|..++
T Consensus         4 ~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~   83 (141)
T 1v27_A            4 GSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH   83 (141)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCC
T ss_pred             CCcccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCC
Confidence            34689999999999999999999999999999999999999999999876655688999999999999999999994356


Q ss_pred             cccCCCceEEEEEEEcCCCC---CcceeeEEecCcccCCCcceeEEEeecc
Q psy12136        193 ETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       193 ~~~l~~~~L~~~V~d~~~~~---~~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ..++....|.|+|||++..+   +++||++.++|.++.... ...|++|..
T Consensus        84 ~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~  133 (141)
T 1v27_A           84 RREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT  133 (141)
T ss_dssp             TTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred             HHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence            56666789999999999886   489999999999987654 678888864

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.89  E-value=1.5e-22  Score=167.94  Aligned_cols=126  Identities=17%  Similarity=0.172  Sum_probs=108.6

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCc
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE  336 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~  336 (399)
                      ...|+|++++.|.+..+.|.|+|++|++   ++.+|.+||||++++.+..++.+++|+++++++||+|||+|.|.+...+
T Consensus        10 ~~~G~l~~sl~y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~   86 (138)
T 1wfm_A           10 NQAPKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE   86 (138)
T ss_dssp             SSCCEEEEEEEEETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred             CcceEEEEEEEEeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHH
Confidence            5689999999999999999999999994   5778899999999997643346789999999999999999999998777


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  397 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~  397 (399)
                      +....|.|+|||++.++++++||++.|+|....            .......|+.|++...
T Consensus        87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~------------~~~~~~~W~~L~~~~~  135 (138)
T 1wfm_A           87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS------------VPLGAAQWGELKTSGP  135 (138)
T ss_dssp             STTCEEEEEEEECCSSCTTSCSEEEEEESSSSS------------SCTTCCEEEECCCCSC
T ss_pred             cCCCEEEEEEEECCCCCCCcEEEEEEEEccccc------------CcccccceeeCcCCCc
Confidence            777899999999999999999999999998753            1234567777777543

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=7.9e-23  Score=171.59  Aligned_cols=126  Identities=24%  Similarity=0.355  Sum_probs=109.4

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCC-CCC------CCCCcEEEEEEecCCCCCceEecccccCCCCCeecc
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAM-DIH------GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHE  184 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~-~~~------~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne  184 (399)
                      ....+|+|++++.|++..++|.|+|++|+||+.. +.+      +.+||||+|++.++..  .++||++++++.||+|||
T Consensus         8 ~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne   85 (147)
T 2enp_A            8 SKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQK--NSKQTGVKRKTQKPVFEE   85 (147)
T ss_dssp             SCCCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCS--SCEECCCCCSCSSCCCCB
T ss_pred             CCCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCC--cceEeecccCCCCCeEee
Confidence            4467899999999999999999999999999984 433      5799999999987543  588999999999999999


Q ss_pred             eEEeceeCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        185 KLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       185 ~f~f~~v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      +|.| .++..++....|.|+|||++..++ ++||++.|+|.++........|+.|..
T Consensus        86 ~f~f-~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  141 (147)
T 2enp_A           86 RYTF-EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP  141 (147)
T ss_dssp             CCEE-CCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred             eEEE-EeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence            9999 577666656799999999999988 999999999999987777777888864

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.89  E-value=9.2e-23  Score=170.34  Aligned_cols=127  Identities=34%  Similarity=0.557  Sum_probs=112.3

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccC
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT  335 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~  335 (399)
                      ....|+|.+++.|.+..+.|.|+|++|++|+..+..+.+||||++++.++. ..+++|++++++.||+|||+|.|.+...
T Consensus        17 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~   95 (143)
T 3f04_A           17 VEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYS   95 (143)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCC-SCCEECCCCCSCSSCEEEEEEEECCCHH
T ss_pred             ccCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCC-CccEECccCcCCCCCcCcCeEEEeecHh
Confidence            467899999999999999999999999999999888999999999997543 3689999999999999999999999876


Q ss_pred             cccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        336 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       336 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      ++....|.|+|||++.++++++||++.|+|....            ++.....|++|+++
T Consensus        96 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~L~~~  143 (143)
T 3f04_A           96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD------------FGHVTEEWRDLQSA  143 (143)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCC------------TTSCEEEEEECBCC
T ss_pred             hcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHcc------------CCCCcceEEECcCC
Confidence            7767899999999999999999999999998743            34457788888764

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=8.7e-23  Score=170.29  Aligned_cols=124  Identities=32%  Similarity=0.548  Sum_probs=105.8

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEecc
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  334 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~  334 (399)
                      ....|+|.+++.|.+..+.|.|.|++|+||+.++..+ +||||++++.++... .+++|++++++.||+|||+|.|.+..
T Consensus         7 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   85 (142)
T 2dmg_A            7 GSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL   85 (142)
T ss_dssp             SCSSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCH
T ss_pred             CCCcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecH
Confidence            3578999999999999999999999999999999888 999999999865543 78999999999999999999999976


Q ss_pred             CcccccEEEEEEEeCCCCCC--CeeeEEEEEccCCCC--Ccchhhhhhhc
Q psy12136        335 TELSKQTLVITVWDKDYGKS--NDYLGCLELCCNSKG--DRLRHWVDMMK  380 (399)
Q Consensus       335 ~~l~~~~l~i~V~d~~~~~~--d~~lG~~~i~l~~~~--~~~~~w~~l~~  380 (399)
                      .++....|.|+|||++.++.  +++||++.|++....  ....+|++|..
T Consensus        86 ~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~  135 (142)
T 2dmg_A           86 PEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE  135 (142)
T ss_dssp             HHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred             HHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence            66666799999999998753  579999999998743  34445555443

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.89  E-value=2e-22  Score=165.18  Aligned_cols=123  Identities=24%  Similarity=0.423  Sum_probs=102.8

Q ss_pred             cceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEe-ccC
Q psy12136        258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KIT  335 (399)
Q Consensus       258 ~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v-~~~  335 (399)
                      ..|+|.+++.|.+..+.|.|+|++|+||+.++..|.+||||++++.++... .+++|++++++.||+|||+|.|.+ ...
T Consensus         3 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   82 (129)
T 2bwq_A            3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR   82 (129)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred             eeEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence            579999999999999999999999999999999999999999999875543 899999999999999999999994 545


Q ss_pred             cccccEEEEEEEeCCCCCC--CeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136        336 ELSKQTLVITVWDKDYGKS--NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS  393 (399)
Q Consensus       336 ~l~~~~l~i~V~d~~~~~~--d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~  393 (399)
                      ++....|.|+|||++.+++  +++||++.|++.+...            . ...+||+|+
T Consensus        83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~------------~-~~~~W~~Lq  129 (129)
T 2bwq_A           83 EFRERMLEITLWDQARVREEESEFLGEILIELETALL------------D-DEPHWYKLQ  129 (129)
T ss_dssp             GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCC------------S-SCEEEEECC
T ss_pred             HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCC------------C-cCCccEECc
Confidence            6667899999999998876  9999999999986431            1 157888875

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=2.1e-22  Score=167.70  Aligned_cols=129  Identities=31%  Similarity=0.417  Sum_probs=110.8

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEe-ccC
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET-KIT  335 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v-~~~  335 (399)
                      ...|+|.+++.|.+..+.|.|+|++|++|+.++..+.+||||++++.++. ..+++|++++++.||+|||+|.|.+ +..
T Consensus        10 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~~~~~~   88 (141)
T 2d8k_A           10 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDK-KHKLETKVKRKNLNPHWNETFLFEGFPYE   88 (141)
T ss_dssp             CCCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCC-SSEEECCCCTTCSSCCCCEEEEECSCCHH
T ss_pred             ceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCC-CccEeCceEcCCCCCccccEEEECccCHH
Confidence            46899999999999999999999999999999989999999999997532 3789999999999999999999985 434


Q ss_pred             cccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCCC
Q psy12136        336 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLS  398 (399)
Q Consensus       336 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~~  398 (399)
                      ++....|.|+|||++.++++++||++.|++.....            +.....|++|++....
T Consensus        89 ~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~------------~~~~~~W~~L~~~~~~  139 (141)
T 2d8k_A           89 KVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL------------TQMQTFWKDLKPSGPS  139 (141)
T ss_dssp             HHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCT------------TSCEEEEECCEECCCC
T ss_pred             HcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcC------------CCCccEEEECcCCCCC
Confidence            45568899999999999899999999999987541            2346788888877554

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.89  E-value=2.3e-22  Score=171.05  Aligned_cols=113  Identities=31%  Similarity=0.468  Sum_probs=101.5

Q ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeC
Q psy12136        113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS  192 (399)
Q Consensus       113 ~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~  192 (399)
                      .+.+|+|++++.|.+..++|.|+|++|+||+..+..+.+||||+|++.+++....++||+++++++||+|||+|.| .++
T Consensus         8 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~v~   86 (159)
T 1tjx_A            8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF-EVP   86 (159)
T ss_dssp             GGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEE-ECC
T ss_pred             cCcCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEE-EcC
Confidence            3568999999999999999999999999999999999999999999986443346889999999999999999999 587


Q ss_pred             cccCCCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136        193 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL  226 (399)
Q Consensus       193 ~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l  226 (399)
                      ..++....|.|+|||++..++ ++||++.|++..+
T Consensus        87 ~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A           87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             GGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             HHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCC
Confidence            777767789999999999987 9999999999864

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.89  E-value=5.3e-22  Score=164.69  Aligned_cols=130  Identities=27%  Similarity=0.372  Sum_probs=110.5

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCC-CCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEE-ec
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-TK  333 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~  333 (399)
                      ....|+|.+++.|.+..+.|.|+|++|+||+.++.. +.+||||++++.++. +.+++|++++++.||+|||+|.|. +.
T Consensus         5 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~~v~   83 (138)
T 1ugk_A            5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK-KHKVKTRVLRKTLDPAFDETFTFYGIP   83 (138)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTT-CSEEECCCCSSCSSCEEEEEEEEECCC
T ss_pred             CCccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCC-CceEecCcCcCCCCCcEeeEEEEcCcC
Confidence            356899999999999999999999999999999885 889999999998632 389999999999999999999995 77


Q ss_pred             cCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136        334 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  397 (399)
Q Consensus       334 ~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~  397 (399)
                      ..++....|.|+|||++.++++++||++.|++.+...           .......|+.|++++.
T Consensus        84 ~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~-----------~~~~~~~~~~l~~~~~  136 (138)
T 1ugk_A           84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL-----------SEGKMLMNREIISGPS  136 (138)
T ss_dssp             STTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCC-----------TTCCEEEEEECBSSSS
T ss_pred             HHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccC-----------CCCcchhhhhhhcCCC
Confidence            6777778999999999999999999999999987431           1123455677777654

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.88  E-value=2.5e-22  Score=167.23  Aligned_cols=128  Identities=23%  Similarity=0.381  Sum_probs=110.6

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEE-ecc
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKI  334 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~-v~~  334 (399)
                      ...|+|.+++.|.+..+.|.|+|++|++|+.++..+.+||||++++.++... .+++|++++++.||+|||+|.|. +..
T Consensus         5 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~   84 (141)
T 1v27_A            5 SSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR   84 (141)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCT
T ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCH
Confidence            5689999999999999999999999999999999999999999999765433 89999999999999999999999 555


Q ss_pred             CcccccEEEEEEEeCCCCCC--CeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136        335 TELSKQTLVITVWDKDYGKS--NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  397 (399)
Q Consensus       335 ~~l~~~~l~i~V~d~~~~~~--d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~  397 (399)
                      .++....|.|+|||++.+++  +++||++.|++.....             ....+||+|++...
T Consensus        85 ~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~-------------~~~~~W~~L~~~~~  136 (141)
T 1v27_A           85 REFRERMLEITLWDQARVREEESEFLGEILIELETALL-------------DDEPHWYKLQTHDS  136 (141)
T ss_dssp             TGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCC-------------SSEEEEEECBCCSS
T ss_pred             HHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCC-------------CCCCceEECccccc
Confidence            56667899999999998876  9999999999976321             12678888887654

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.88  E-value=3.1e-22  Score=165.92  Aligned_cols=111  Identities=32%  Similarity=0.515  Sum_probs=101.1

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      +|+|++++.|.+..++|.|+|++|++|+..+..+.+||||+|++.++.....+++|++++++.||+|||+|.| .++..+
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f-~v~~~~   80 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAF-DIPTEK   80 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEE-ECCGGG
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEE-ECChhh
Confidence            6999999999999999999999999999999989999999999986544456889999999999999999999 588777


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccC
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR  227 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~  227 (399)
                      +....|.|+|||++..++ ++||++.++|.++.
T Consensus        81 l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           81 LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             GGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred             cCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence            777899999999999987 99999999999754

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.88  E-value=4.6e-22  Score=164.18  Aligned_cols=125  Identities=25%  Similarity=0.366  Sum_probs=103.2

Q ss_pred             eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEE-eccCcc
Q psy12136        260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKITEL  337 (399)
Q Consensus       260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~-v~~~~l  337 (399)
                      |...+.+.|....+.|.|+|++|+||+. +.++.+||||++++.++... .+++|++++++.||+|||+|.|. +...++
T Consensus         7 ~~~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l   85 (134)
T 2b3r_A            7 GSGAVKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETL   85 (134)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHH
T ss_pred             ccEEEEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHh
Confidence            3444555566667999999999999997 77889999999999865433 78999999999999999999999 876666


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  397 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~  397 (399)
                      ....|.|+|||++.++++++||++.|++....            ++....+||+|.+++.
T Consensus        86 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~------------~~~~~~~W~~L~~~~~  133 (134)
T 2b3r_A           86 RQRELQLSVLSAESLRENFFLGGITLPLKDFN------------LSKETVKWYQLTAATY  133 (134)
T ss_dssp             TTCEEEEEEEECCSSSCCEEEEEEEEEGGGSC------------TTSCEEEEEECBC---
T ss_pred             CcCEEEEEEEECCCCCCCcEEEEEEEEhhhcc------------CCCCcceeEECCCccC
Confidence            67899999999999999999999999998753            2345789999988753

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=3.4e-22  Score=167.68  Aligned_cols=130  Identities=26%  Similarity=0.348  Sum_probs=110.1

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCC-CCC------CCCCcEEEEEEecCCCCceEeecceeCCCCceecceE
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPM-DSN------GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEF  328 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~-~~~------g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f  328 (399)
                      ....|+|.+++.|.+..+.|.|+|++|+||+.. +.+      +.+||||+|++.++. +.+++|++++++.||+|||+|
T Consensus         9 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f   87 (147)
T 2enp_A            9 KYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQ-KNSKQTGVKRKTQKPVFEERY   87 (147)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCC-SSCEECCCCCSCSSCCCCBCC
T ss_pred             CCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCC-CcceEeecccCCCCCeEeeeE
Confidence            467999999999999999999999999999984 433      589999999998643 368899999999999999999


Q ss_pred             EEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCCC
Q psy12136        329 AIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLS  398 (399)
Q Consensus       329 ~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~~  398 (399)
                      .|.+...++....|.|+|||++.++++++||++.|++....            .......|+.|+++..+
T Consensus        88 ~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~w~~L~~~~~~  145 (147)
T 2enp_A           88 TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVD------------LVKGGHWWKALIPSGPS  145 (147)
T ss_dssp             EECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSC------------TTTCCCEEECCBCCCCC
T ss_pred             EEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcC------------CCCCccEEEEeecCCCC
Confidence            99997666666799999999999999999999999998753            12234678888887654

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.88  E-value=3.4e-22  Score=164.93  Aligned_cols=121  Identities=22%  Similarity=0.330  Sum_probs=104.1

Q ss_pred             EEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCC
Q psy12136        119 IELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSL  198 (399)
Q Consensus       119 i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~  198 (399)
                      +-+.+.|+...++|.|+|++|+||+. +..+.+||||+|++.++.....++||+++++++||+|||+|.|..++..++..
T Consensus         9 ~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~   87 (134)
T 2b3r_A            9 GAVKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQ   87 (134)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTT
T ss_pred             EEEEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCc
Confidence            33445555578999999999999997 77788999999999886555678999999999999999999993277666667


Q ss_pred             ceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        199 QSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       199 ~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ..|.|+|||++..++ ++||++.++|.++..+.....|++|..
T Consensus        88 ~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  130 (134)
T 2b3r_A           88 RELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA  130 (134)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred             CEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence            899999999999987 999999999999988878888988864

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.88  E-value=5.7e-22  Score=165.28  Aligned_cols=115  Identities=29%  Similarity=0.484  Sum_probs=101.7

Q ss_pred             ccccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEE-e
Q psy12136        255 ECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-T  332 (399)
Q Consensus       255 ~~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~-v  332 (399)
                      .....|+|.+++.|.+..+.|.|+|++|++|+.++..|.+||||++++.+...+ .+++|++++++.||+|||+|.|. +
T Consensus        11 ~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~   90 (142)
T 2chd_A           11 QATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI   90 (142)
T ss_dssp             ---CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESC
T ss_pred             CCCccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEccc
Confidence            356799999999999999999999999999999998999999999999865444 89999999999999999999998 6


Q ss_pred             ccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC
Q psy12136        333 KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG  369 (399)
Q Consensus       333 ~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~  369 (399)
                      ...++....|.|+|||++.++++++||++.|++.+..
T Consensus        91 ~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~  127 (142)
T 2chd_A           91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK  127 (142)
T ss_dssp             CHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCC
T ss_pred             CHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcC
Confidence            6555555799999999999989999999999998754

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.88  E-value=2.6e-22  Score=169.56  Aligned_cols=126  Identities=24%  Similarity=0.353  Sum_probs=107.7

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      .....|++++++.|.+..++|.|+|++|++|++.+ .+.+||||+|++.++.....+++|++++++.||+|||+|.| .+
T Consensus         9 ~~~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~v   86 (153)
T 3fbk_A            9 SHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF-PV   86 (153)
T ss_dssp             ----CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEE-EC
T ss_pred             ccCCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEE-ec
Confidence            44567999999999999999999999999999998 68999999999988665568899999999999999999999 57


Q ss_pred             CcccCCCceEEEEEEEcCCCC--CcceeeEEecCcccCC-CcceeEEEeecc
Q psy12136        192 SETDLSLQSLHILVLDDDKYG--HDFLGEARFPLNRLRP-HISRDLCLNLCK  240 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~--~~~lG~~~i~l~~l~~-~~~~~~~~~L~~  240 (399)
                      ...++. ..|.|+|||++..+  +++||++.++|.++.. +.....|+.|..
T Consensus        87 ~~~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~  137 (153)
T 3fbk_A           87 QEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG  137 (153)
T ss_dssp             CGGGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred             ccHHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence            666664 45999999999875  3899999999999984 667778888864

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.88  E-value=1.4e-21  Score=167.43  Aligned_cols=115  Identities=31%  Similarity=0.463  Sum_probs=102.2

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      +...+|+|++++.|.+..++|.|+|++|++|+..+..+.+||||+|++.++.....++||+++++++||+|||+|.| .+
T Consensus        19 ~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~v   97 (166)
T 2cm5_A           19 DIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY-DI   97 (166)
T ss_dssp             -CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEE-EC
T ss_pred             CcCccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEE-Ec
Confidence            45678999999999999999999999999999999999999999999987544457999999999999999999999 57


Q ss_pred             CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccC
Q psy12136        192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR  227 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~  227 (399)
                      ...++....|.|+|||++..++ ++||++.|+|.++.
T Consensus        98 ~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A           98 KHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             CGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred             chHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCC
Confidence            7777767899999999999987 99999999999863

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.88  E-value=1.1e-22  Score=169.59  Aligned_cols=127  Identities=33%  Similarity=0.501  Sum_probs=109.1

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC----------ceEeecceeCCCCceecc
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK----------RKYKTGVKWKTLNPIFNE  326 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~----------~~~kT~v~~~t~nP~wne  326 (399)
                      ...|+|.+++.|.  .+.|.|+|++|+||+.++..|.+||||++++.+..+.          .+++|++++++.||+|||
T Consensus         4 ~~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne   81 (142)
T 1rh8_A            4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ   81 (142)
T ss_dssp             CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred             CcceEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCC
Confidence            5699999999998  5899999999999999999999999999999864321          468999999999999999


Q ss_pred             eEEEE-eccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136        327 EFAIE-TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL  397 (399)
Q Consensus       327 ~f~f~-v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~  397 (399)
                      +|.|. +...++....|.|+|||++.++++++||++.|++.+...            .....+||+|.+...
T Consensus        82 ~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~------------~~~~~~W~~L~~~~~  141 (142)
T 1rh8_A           82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH------------LDNTPRWYPLKEQTE  141 (142)
T ss_dssp             EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG------------GTTCCEEEECBCCCC
T ss_pred             EEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEecccccc------------CCCCCeEEECCccCC
Confidence            99997 765566678999999999999999999999999987531            124679999998764

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.88  E-value=9e-23  Score=170.17  Aligned_cols=125  Identities=30%  Similarity=0.455  Sum_probs=108.4

Q ss_pred             CcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC---------CceEecccccCCCCCeecc
Q psy12136        114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT---------SHRLRTKTCLRTINPEFHE  184 (399)
Q Consensus       114 ~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---------~~~~rT~~~~~t~nP~wne  184 (399)
                      ..+|+|++++.|.  .+.|.|+|++|++|++++..|.+||||+|++.+....         ..++||++++++.||+|||
T Consensus         4 ~~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne   81 (142)
T 1rh8_A            4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ   81 (142)
T ss_dssp             CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred             CcceEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCC
Confidence            4689999999998  7899999999999999999999999999999764321         1368999999999999999


Q ss_pred             eEEeceeCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        185 KLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       185 ~f~f~~v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      +|.|..++.+++....|.|+|||++..++ ++||++.|+|.++........|++|..
T Consensus        82 ~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  138 (142)
T 1rh8_A           82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             EEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence            99994366666667899999999999988 999999999999987667778888864

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.87  E-value=1.7e-22  Score=170.65  Aligned_cols=125  Identities=26%  Similarity=0.376  Sum_probs=98.8

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      .....|+|++++.|.+..++|.|+|++|++|+..+..+.+||||+|++.++.....++||+++++++||+|||+|.| .+
T Consensus        12 ~~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~v   90 (153)
T 1w15_A           12 IPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF-DI   90 (153)
T ss_dssp             ----CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEE-EC
T ss_pred             CCccccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEE-EC
Confidence            34568999999999999999999999999999999889999999999987543334789999999999999999999 58


Q ss_pred             CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      ...++....|.|+|||++..++ ++||++.|+|.+.  ......|+.|.
T Consensus        91 ~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~l~  137 (153)
T 1w15_A           91 PCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEIC  137 (153)
T ss_dssp             CSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC--SHHHHHHHHHH
T ss_pred             CHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC--chHHHHHHHHH
Confidence            8777767899999999999987 9999999999883  23333444443

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.87  E-value=1.7e-21  Score=167.72  Aligned_cols=123  Identities=23%  Similarity=0.324  Sum_probs=104.7

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCC-CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEece
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS  190 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~  190 (399)
                      ....+|+|++++.|  ..++|.|+|++|++|++++. .+.+||||+|++.++.....++||++++++.||+|||+|.| .
T Consensus        14 ~~~~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~   90 (171)
T 2q3x_A           14 ATPAMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF-D   90 (171)
T ss_dssp             ---CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEC-S
T ss_pred             CCCCccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEE-E
Confidence            34568999999999  68999999999999999985 68999999999987443335889999999999999999999 4


Q ss_pred             eCcccCCCceEEEEEE-EcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        191 VSETDLSLQSLHILVL-DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       191 v~~~~l~~~~L~~~V~-d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      +...   ...|.|+|| |++..++ ++||++.|+|.++..+.....|++|..
T Consensus        91 v~~~---~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~  139 (171)
T 2q3x_A           91 ESPQ---GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP  139 (171)
T ss_dssp             SCCT---TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBC
T ss_pred             ecCC---CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCC
Confidence            5433   578999999 9999988 999999999999988778888999875

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.86  E-value=3.6e-21  Score=161.81  Aligned_cols=123  Identities=31%  Similarity=0.452  Sum_probs=106.6

Q ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeC
Q psy12136        113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS  192 (399)
Q Consensus       113 ~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~  192 (399)
                      .+.+|+|++++.|  ..++|.|+|++|++|+..+..+.+||||+|++.++.....++||++++++.||+|||+|.| .+.
T Consensus        16 ~~~~G~l~~~l~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~v~   92 (149)
T 1a25_A           16 MERRGRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF-QLK   92 (149)
T ss_dssp             -CTTCEEEEEEEE--SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEE-ECC
T ss_pred             CCcceEEEEEEEe--cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEE-Eec
Confidence            3568999999999  4688999999999999999899999999999987655567899999999999999999999 466


Q ss_pred             cccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        193 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       193 ~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ..++ ...|.|+|||++..++ ++||++.|+|.++..+ ....|+.|..
T Consensus        93 ~~~~-~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~  139 (149)
T 1a25_A           93 ESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  139 (149)
T ss_dssp             SGGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             cccC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence            5444 3689999999999987 9999999999999876 4677888864

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.86  E-value=5.7e-21  Score=164.33  Aligned_cols=107  Identities=22%  Similarity=0.363  Sum_probs=93.5

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCC-CCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEecc
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  334 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~-~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~  334 (399)
                      ...|+|.+++.|  ..+.|.|+|++|+||+.++. +|.+||||+|++.++... .+++|++++++.||+|||+|.|.+..
T Consensus        16 ~~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   93 (171)
T 2q3x_A           16 PAMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP   93 (171)
T ss_dssp             -CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC
T ss_pred             CCccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC
Confidence            568999999999  57899999999999999985 789999999999874433 58999999999999999999999853


Q ss_pred             CcccccEEEEEEE-eCCCCCCCeeeEEEEEccCCC
Q psy12136        335 TELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       335 ~~l~~~~l~i~V~-d~~~~~~d~~lG~~~i~l~~~  368 (399)
                         ....|.|+|| |++.++++++||++.|++...
T Consensus        94 ---~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l  125 (171)
T 2q3x_A           94 ---QGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL  125 (171)
T ss_dssp             ---TTEEEEEEEEEECSTTCSSEEEEEEEECGGGS
T ss_pred             ---CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHc
Confidence               3578999999 999999999999999999874

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.86  E-value=8.5e-21  Score=159.53  Aligned_cols=124  Identities=33%  Similarity=0.553  Sum_probs=104.9

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEecc
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI  334 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~  334 (399)
                      ....|+|.+++.|.  .+.|.|+|++|++|+.++..+.+||||+|++.++... .+++|++++++.||+|||+|.|.+..
T Consensus        16 ~~~~G~l~~~l~~~--~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   93 (149)
T 1a25_A           16 MERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE   93 (149)
T ss_dssp             -CTTCEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCS
T ss_pred             CCcceEEEEEEEec--CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEecc
Confidence            35689999999985  5789999999999999999999999999999875443 78999999999999999999999975


Q ss_pred             CcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       335 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      .++ ...|.|+|||++.++++++||++.|++....          ..   ...+||+|.+.
T Consensus        94 ~~~-~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~----------~~---~~~~W~~L~~~  140 (149)
T 1a25_A           94 SDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQ----------KA---GVDGWFKLLSQ  140 (149)
T ss_dssp             GGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHT----------TC---CEEEEEECBCH
T ss_pred             ccC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhC----------cC---ccCCeEEccCC
Confidence            444 3689999999999989999999999986532          11   36778888764

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=2.6e-20  Score=154.80  Aligned_cols=128  Identities=24%  Similarity=0.330  Sum_probs=104.7

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC-CCceEEEEEE
Q psy12136        128 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL-SLQSLHILVL  206 (399)
Q Consensus       128 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l-~~~~L~~~V~  206 (399)
                      ..+.|.|+|++|++|+..+. +.+||||+|++.     ..++||++++++.||+|||+|.| .+....+ ....|.|+||
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f-~v~~~~~~~~~~l~i~V~   77 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK-----DEKKKTKKVDNELNPVWNEILEF-DLRGIPLDFSSSLGIIVK   77 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS-----SCEEECCCCCSCSSCEEEEEEEE-ECSSCCCCTTCEEEEEEE
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC-----CEeEEeeeecCCCCCccCcEEEE-EecccccCCCCEEEEEEE
Confidence            45789999999999999998 999999999995     46899999999999999999999 5654333 3588999999


Q ss_pred             EcCCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeecc
Q psy12136        207 DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK  271 (399)
Q Consensus       207 d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~  271 (399)
                      |++..++ ++||++.++|.++..+.....|+.+.....         .......|+|++++.|.|.
T Consensus        78 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~---------~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           78 DFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN---------EKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             ETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEEC---------TTCCEEEEEEEEEEEECCC
T ss_pred             ECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccC---------CCCCCCCCEEEEEEEEECC
Confidence            9999987 999999999999988877778877321110         0011356999999999874

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.84  E-value=3.8e-20  Score=156.18  Aligned_cols=128  Identities=25%  Similarity=0.401  Sum_probs=97.6

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEE
Q psy12136        128 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVL  206 (399)
Q Consensus       128 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~  206 (399)
                      ..+.|.|+|++|++|+..+..+.+||||+|++.+... ...++||++++++.||+|||+|.| .+...   ...|.|+||
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~v~~~---~~~l~~~V~   93 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF-RVHPQ---QHRLLFEVF   93 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEE-EECTT---TCEEEEEEE
T ss_pred             CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEE-EecCC---CCEEEEEEE
Confidence            4468999999999999999889999999999975221 136889999999999999999999 46543   478999999


Q ss_pred             EcCCCCC-cceeeEEecCcccCCCcce------eEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        207 DDDKYGH-DFLGEARFPLNRLRPHISR------DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       207 d~~~~~~-~~lG~~~i~l~~l~~~~~~------~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      |++..++ ++||++.|+|.++..+...      ..|+.|....           ......|+|++++.|.|
T Consensus        94 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----------~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           94 DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS-----------HKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             ECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS-----------TTCCCCSEEEEEEEECC
T ss_pred             ECCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc-----------CCCCcceEEEEEEEEeC
Confidence            9999987 9999999999999866543      4677775421           11256899999999976

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=1.4e-20  Score=155.04  Aligned_cols=126  Identities=32%  Similarity=0.475  Sum_probs=103.3

Q ss_pred             EEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEE
Q psy12136        123 VTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLH  202 (399)
Q Consensus       123 l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~  202 (399)
                      +.|....+.|.|+|++|++|++.+..+.+||||+|++.     ..++||++++++.||+|||+|.| .+...   ...|.
T Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f-~~~~~---~~~l~   76 (133)
T 2ep6_A            6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG-----NDRLQTHTVYKNLNPEWNKVFTF-PIKDI---HDVLE   76 (133)
T ss_dssp             CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET-----TEEEECCCCSSCSSCCCCEEEEE-EESCT---TCEEE
T ss_pred             ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC-----CEEEEeeeecCCCCCccccEEEE-EecCC---CCEEE
Confidence            44666778999999999999999989999999999995     36889999999999999999999 46532   46899


Q ss_pred             EEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        203 ILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       203 ~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      |+|||++..++ ++||++.++|.++..+.  ..|++|....           ......|+|++++.|..
T Consensus        77 i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~-----------~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           77 VTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD-----------LEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             EEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSC-----------TTSCCSSEEEEEEEEEE
T ss_pred             EEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCC-----------CCCccceEEEEEEEEEe
Confidence            99999999987 99999999999997654  3566665310           01257899999988753

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=5.5e-20  Score=149.89  Aligned_cols=121  Identities=20%  Similarity=0.318  Sum_probs=100.2

Q ss_pred             CCEEEEEEEEecCCCCC---CCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEE
Q psy12136        129 TCSLHVTLHRAKGLRAM---DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV  205 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V  205 (399)
                      .++|.|+|++|++|+++   +..+.+||||+|++.+..  ..++||++++++.||+|||+|.| .+...+  ...|.|+|
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~wne~f~f-~v~~~~--~~~l~i~V   76 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEF-ILDPNQ--ENVLEITL   76 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEE-EECTTS--CCEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCC--CceEEccccCCCCCCcccceEEE-EecCCC--CCEEEEEE
Confidence            46899999999999984   556889999999997533  37899999999999999999999 464332  47899999


Q ss_pred             EEcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        206 LDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       206 ~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      ||++..++++||++.++|.++..+..+..|++|..                ...|.|++++...|
T Consensus        77 ~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~----------------~~~g~i~~~le~~~  125 (126)
T 1rlw_A           77 MDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------------VTEMVLEMSLEVAS  125 (126)
T ss_dssp             EECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT----------------TEEEEEEEEEECCC
T ss_pred             EECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCC----------------CceEEEEEEEEeCC
Confidence            99998866999999999999998888889999963                34677777765443

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.82  E-value=2.7e-20  Score=156.73  Aligned_cols=114  Identities=20%  Similarity=0.335  Sum_probs=95.3

Q ss_pred             CCEEEEEEEEecCCCCCCC----------CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCC
Q psy12136        129 TCSLHVTLHRAKGLRAMDI----------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSL  198 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~----------~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~  198 (399)
                      .+.|+|+|++|++|+++|.          .+.+||||+|.+..    ....||+++++|+||+|||+|.| .+..    .
T Consensus        28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~----~~~~kT~v~~ktlnP~WNE~F~f-~v~~----~   98 (157)
T 2fk9_A           28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ----VRVGQTSTKQKTNKPTYNEEFCA-NVTD----G   98 (157)
T ss_dssp             EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETT----EEEEECCCCSSCSSCEEEEEEEE-EEEE----E
T ss_pred             ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECC----EeeEEeeecCCCCCCccCcEEEE-EcCC----C
Confidence            3589999999999998873          36799999999952    34579999999999999999999 4643    2


Q ss_pred             ceEEEEEEEcCCCCC-cceeeEEecCcccCCC----cceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        199 QSLHILVLDDDKYGH-DFLGEARFPLNRLRPH----ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       199 ~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      ..|.|+|||++..++ ++||++.|+|.++..+    .....|++|+                  ..|+|++.+.+.
T Consensus        99 ~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~------------------~~G~i~l~l~~~  156 (157)
T 2fk9_A           99 GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE------------------PEGKVFVVITLT  156 (157)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB------------------SSCEEEEEEEEC
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC------------------CCcEEEEEEEEE
Confidence            589999999999987 9999999999998754    5677888884                  268999988774

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.82  E-value=2.2e-19  Score=150.57  Aligned_cols=119  Identities=29%  Similarity=0.465  Sum_probs=99.1

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      .++|.|+|++|++|++.+..+.+||||++++.     ..+++|++++++.||+|||+|.| .+...   ...|.|+|||+
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f-~v~~~---~~~l~~~v~d~   86 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVG-----KTKKRTKTIYGNLNPVWEENFHF-ECHNS---SDRIKVRVLDE   86 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-----TEEEECCCCCSCSSCEEEEEEEE-EECST---TCEEEEEEEEC
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC-----CEEEECCccCCCCCCCcccEEEE-EecCC---CCEEEEEEEEC
Confidence            47899999999999999999999999999993     47899999999999999999999 46543   36899999999


Q ss_pred             CCC-----------CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        209 DKY-----------GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       209 ~~~-----------~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      +..           ++ ++||++.++|.++.  .....|++|....           ......|+|+++++|.
T Consensus        87 d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~-----------~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           87 DDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRT-----------DKSAVSGAIRLHISVE  146 (148)
T ss_dssp             CCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSS-----------TTCCCCCEEEEEEEEE
T ss_pred             CCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCC-----------CCCCCceEEEEEEEEE
Confidence            985           56 99999999999993  3556788886411           1124679999999885

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=1.9e-19  Score=167.56  Aligned_cols=122  Identities=34%  Similarity=0.610  Sum_probs=106.6

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCc
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE  336 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~  336 (399)
                      ...|+|.+++.|.+..+.|.|+|++|++|+.++..+.+||||++++.+.. ..+++|++++++.||+|||+|.|.+...+
T Consensus         3 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-~~~~~T~~~~~~~nP~wne~f~f~v~~~~   81 (284)
T 2r83_A            3 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYSE   81 (284)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCT-TSCEECCCCCSCSSCEEEEEEEECCCGGG
T ss_pred             cceeEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCC-CceEeCCcccCCCCCeeCceEEEEechHH
Confidence            46899999999999999999999999999999999999999999998643 26889999999999999999999998777


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC--Ccchhhhhhh
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG--DRLRHWVDMM  379 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~--~~~~~w~~l~  379 (399)
                      +....|.|+|||++.++++++||++.|++....  ...++|++|.
T Consensus        82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~  126 (284)
T 2r83_A           82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  126 (284)
T ss_dssp             CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEee
Confidence            777899999999999989999999999998743  3344455444

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.82  E-value=1.5e-19  Score=156.26  Aligned_cols=130  Identities=25%  Similarity=0.414  Sum_probs=96.8

Q ss_pred             CCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEE
Q psy12136        127 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV  205 (399)
Q Consensus       127 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V  205 (399)
                      ...+.|.|+|++|++|+..+..+.+||||+|++.+... ...+++|++++++.||+|||.|.| .+...   ...|.|+|
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f-~v~~~---~~~L~~~V   80 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF-RVLPQ---RHRILFEV   80 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEE-EECTT---TCEEEEEE
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEE-EEcCC---CCEEEEEE
Confidence            34578999999999999999999999999999975321 125789999999999999999999 46543   36899999


Q ss_pred             EEcCCCCC-cceeeEEecCcccCCCcce-e-----EEEeecccCCCCCccccccccccccceeEEEEEeeecc
Q psy12136        206 LDDDKYGH-DFLGEARFPLNRLRPHISR-D-----LCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK  271 (399)
Q Consensus       206 ~d~~~~~~-~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~  271 (399)
                      ||++..++ ++||++.|+|.++...... .     .|+.|....           ......|+|++++.|.|.
T Consensus        81 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----------~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           81 FDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS-----------HKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             EECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS-----------TTCCCCSEEEEEEEECC-
T ss_pred             EECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC-----------CCCccCEEEEEEEEEEeC
Confidence            99999987 9999999999999866443 1     577775311           112468999999999986

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.81  E-value=7.1e-20  Score=151.39  Aligned_cols=116  Identities=21%  Similarity=0.323  Sum_probs=95.7

Q ss_pred             CCEEEEEEEEecCCCCCCCCCC-----------CCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCC
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGT-----------SDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS  197 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~-----------~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~  197 (399)
                      .+.|.|+|++|++|++.+..+.           +||||+|.+..    ....+|+++++++||+|||+|.| .+...   
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~----~~~~~T~~~~~t~nP~WnE~f~f-~v~~~---   76 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD----SRIGQTATKQKTNSPAWHDEFVT-DVCNG---   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT----EEEEECCCCSSCSSCEEEEEEEE-EEEEE---
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECC----eEeeeeeEECCCcCCccCCEEEE-EecCC---
Confidence            3689999999999998875433           99999999942    34579999999999999999999 45433   


Q ss_pred             CceEEEEEEEcCCCCC-cceeeEEecCcccCCCc--ceeEEEeecccCCCCCccccccccccccceeEEEEEeeecc
Q psy12136        198 LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI--SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK  271 (399)
Q Consensus       198 ~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~--~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~  271 (399)
                       ..|.|+|||++..++ ++||++.++|.++....  ....|+.|.                  ..|+|++.++|.+.
T Consensus        77 -~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~------------------~~G~i~l~l~~~~~  134 (136)
T 1gmi_A           77 -RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE------------------PEGKVYVIIDLSGS  134 (136)
T ss_dssp             -CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB------------------SSCEEEEEEEEEEE
T ss_pred             -CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC------------------CCeEEEEEEEEEec
Confidence             789999999999887 99999999999988653  236777763                  36999999999764

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.80  E-value=1.5e-19  Score=149.44  Aligned_cols=121  Identities=27%  Similarity=0.408  Sum_probs=101.7

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEeccccc-CCCCCeecceEEeceeCcccCCCceEEEEEEE
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLD  207 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~-~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d  207 (399)
                      .+.|.|+|++|++|+..+..+.+||||+|++.+     .++||++++ ++.||+|||+|.| .+..   ....|.|+|||
T Consensus         9 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f-~v~~---~~~~l~~~V~d   79 (136)
T 1wfj_A            9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-----QDQKSNVAEGMGTTPEWNETFIF-TVSE---GTTELKAKIFD   79 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-----CEEECCCCTTCCSSCEEEEEEEE-EEES---SCCEEEEEECC
T ss_pred             cEEEEEEEEeccCCCCcccCCCcCceEEEEECC-----ccceeEeccCCCCCCccCcEEEE-EECC---CCCEEEEEEEE
Confidence            357999999999999999889999999999953     578999998 8999999999999 4554   35789999999


Q ss_pred             cCCCCC-cceeeEEecCccc-CCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeeccc
Q psy12136        208 DDKYGH-DFLGEARFPLNRL-RPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKK  272 (399)
Q Consensus       208 ~~~~~~-~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~  272 (399)
                      ++..++ ++||++.|+|.++ ..+.....|++|..              .....|+|++++.|.|..
T Consensus        80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~--------------~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------------DEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------------TTEEEEEEEEEEEEEECC
T ss_pred             CCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec--------------CCccCEEEEEEEEEEeCC
Confidence            999887 9999999999998 44444567777751              125789999999998853

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.80  E-value=4.6e-19  Score=145.72  Aligned_cols=123  Identities=27%  Similarity=0.363  Sum_probs=96.8

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      ..+|+|+|++|++|++.+..|.+||||+|++.+.   ..+++|+++++++||+|||+|.| .+...    ..|.|+|||+
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~---~~~~kT~v~~~t~nP~wne~f~f-~v~~~----~~l~~~v~d~   75 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS---GQCHSTDTVKNTLDPKWNQHYDL-YVGKT----DSITISVWNH   75 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT---CCEEECCCCSSCSSCEEEEEEEE-EEETT----CCEEEEEEEG
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC---CceEECCccCCCCCCCccCEEEE-EeCCC----CEEEEEEEEC
Confidence            3579999999999999999999999999999642   37899999999999999999999 45433    3599999999


Q ss_pred             CCCC----CcceeeEEecCccc-CCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        209 DKYG----HDFLGEARFPLNRL-RPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       209 ~~~~----~~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      +..+    +++||++.+++.++ ........|++|....+         .......|+|.+++++
T Consensus        76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~---------~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           76 KKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP---------SDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             GGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSST---------TCCCCCCSEEEEEEEE
T ss_pred             CCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCC---------CCCCceeEEEEEEEEc
Confidence            9875    48999999999887 33333456677764211         1112568999998864

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=1.8e-19  Score=148.39  Aligned_cols=108  Identities=29%  Similarity=0.366  Sum_probs=93.7

Q ss_pred             EeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEE
Q psy12136        266 LCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT  345 (399)
Q Consensus       266 l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~  345 (399)
                      +.|.+..+.|.|+|++|++|+..+..|.+||||++++.+    .+++|++++++.||+|||+|.|.+..  . ...|.|+
T Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~kT~~~~~t~nP~wne~f~f~~~~--~-~~~l~i~   78 (133)
T 2ep6_A            6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN----DRLQTHTVYKNLNPEWNKVFTFPIKD--I-HDVLEVT   78 (133)
T ss_dssp             CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT----EEEECCCCSSCSSCCCCEEEEEEESC--T-TCEEEEE
T ss_pred             ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC----EEEEeeeecCCCCCccccEEEEEecC--C-CCEEEEE
Confidence            346777899999999999999999899999999999953    67899999999999999999999973  2 4789999


Q ss_pred             EEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhc
Q psy12136        346 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK  380 (399)
Q Consensus       346 V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~  380 (399)
                      |||++..+++++||++.|++.+...+..+|++|..
T Consensus        79 V~d~d~~~~~~~lG~~~i~l~~l~~~~~~w~~L~~  113 (133)
T 2ep6_A           79 VFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKN  113 (133)
T ss_dssp             EEEEETTEEEEECCBCEEEGGGCCSSCCEECCCBC
T ss_pred             EEECCCCCCCCeeEEEEEEHHHccCCCceEEEeec
Confidence            99999988899999999999886655566766654

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.78  E-value=9.4e-19  Score=163.93  Aligned_cols=123  Identities=36%  Similarity=0.599  Sum_probs=106.1

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCc
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE  336 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~  336 (399)
                      ...|+|.+++.|.+..+.|.|+|++|++|+.++..|.+||||++++.+++ +.+++|++++++.||+|||+|.|.+...+
T Consensus         4 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~   82 (296)
T 1dqv_A            4 APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR-KKKFQTKVHRKTLNPIFNETFQFSVPLAE   82 (296)
T ss_dssp             CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTST-TSCEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred             CeeeEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCC-CeeEeCCccCCCCCCcEeeEEEEEecHHH
Confidence            57899999999999999999999999999999999999999999997532 37889999999999999999999998777


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEc-cC---CCCCcchhhhhhhc
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELC-CN---SKGDRLRHWVDMMK  380 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~-l~---~~~~~~~~w~~l~~  380 (399)
                      +....|.|+|||++.++++++||++.|+ +.   .......+|++|..
T Consensus        83 l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~  130 (296)
T 1dqv_A           83 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  130 (296)
T ss_dssp             GSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             hcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccc
Confidence            7778999999999999999999999996 32   23344556666543

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.77  E-value=3e-18  Score=144.26  Aligned_cols=108  Identities=20%  Similarity=0.273  Sum_probs=88.6

Q ss_pred             ccceeEEEEEEeeecCCCCCC----------CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccc
Q psy12136        270 TKKRALIVNLIKCTNLIPMDS----------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK  339 (399)
Q Consensus       270 ~~~~~L~v~v~~a~~L~~~~~----------~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~  339 (399)
                      ...+.|.|+|++|++|+++|.          .|.+||||++.+.+   .+..+|++++++.||+|||+|.|.+..    .
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~---~~~~kT~v~~ktlnP~WNE~F~f~v~~----~   98 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ---VRVGQTSTKQKTNKPTYNEEFCANVTD----G   98 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETT---EEEEECCCCSSCSSCEEEEEEEEEEEE----E
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECC---EeeEEeeecCCCCCCccCcEEEEEcCC----C
Confidence            446899999999999998872          36799999999942   255799999999999999999999862    3


Q ss_pred             cEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcC--CCCceeeEEeCCC
Q psy12136        340 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKY--PDHKHEGIHNLSI  394 (399)
Q Consensus       340 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~--p~~~~~~Wh~L~~  394 (399)
                      ..|.|+|||++.+++|++||++.|++.+          +...  ++..+..|++|.+
T Consensus        99 ~~L~~~V~D~d~~~~dd~iG~~~i~l~~----------l~~~~~~~~~~~~W~~L~~  145 (157)
T 2fk9_A           99 GHLELAVFHETPLGYDHFVANCTLQFQE----------LLRTTGASDTFEGWVDLEP  145 (157)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHH----------HHHHHTTCSEEEEEEECBS
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEEHHH----------hhcccCCCCcccEEEECCC
Confidence            5899999999999999999999999754          2222  3456778888865

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=2.9e-18  Score=142.31  Aligned_cols=108  Identities=20%  Similarity=0.201  Sum_probs=91.4

Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcc-cccEEEEEEEeC
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITEL-SKQTLVITVWDK  349 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~V~d~  349 (399)
                      ..+.|.|+|++|++|+..+. +.+||||++++.+    .+++|++++++.||+|||+|.|.+...++ ....|.|+|||+
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~   79 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD----EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF   79 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS----CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC----EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence            35789999999999999988 9999999999963    67999999999999999999999975433 357899999999


Q ss_pred             CCCCCCeeeEEEEEccCCC--CCcchhhhh---hhcCCC
Q psy12136        350 DYGKSNDYLGCLELCCNSK--GDRLRHWVD---MMKYPD  383 (399)
Q Consensus       350 ~~~~~d~~lG~~~i~l~~~--~~~~~~w~~---l~~~p~  383 (399)
                      +.++++++||++.|++...  +...++|++   |....+
T Consensus        80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~  118 (140)
T 2dmh_A           80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKG  118 (140)
T ss_dssp             TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTC
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCC
Confidence            9998999999999999874  345577877   554443

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.76  E-value=2.3e-18  Score=148.01  Aligned_cols=121  Identities=19%  Similarity=0.209  Sum_probs=95.5

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      .++|.|+|++|++|+..+..+.+||||+|++.     ..++||+++++++||+|||+|.| .+..    ...|.|+|||+
T Consensus        35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~-----~~~~kT~v~~~tlnP~Wne~f~f-~v~~----~~~L~~~V~D~  104 (173)
T 2nq3_A           35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVD-----GQSKKTEKCNNTNSPKWKQPLTV-IVTP----VSKLHFRVWSH  104 (173)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEET-----TEEEECCCCSSCSSCEEEEEEEE-EECT----TCEEEEEEEEC
T ss_pred             ceEEEEEEEEeECCCCcccCCCCCeEEEEEEC-----CEEeEccccCCCCCCeECCEEEE-EeCC----CCEEEEEEEEC
Confidence            45799999999999944434459999999995     37899999999999999999999 4643    57899999999


Q ss_pred             CCCCC-cceeeEEecCcccCCCcc-----eeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        209 DKYGH-DFLGEARFPLNRLRPHIS-----RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      +..++ ++||++.++|.++..+..     ...|+.|....           ......|+|.+.+.|.+
T Consensus       105 d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~-----------~~~~~~G~L~v~l~~l~  161 (173)
T 2nq3_A          105 QTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK-----------EPTETIGDLSICLDGLQ  161 (173)
T ss_dssp             CSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESS-----------CTTSEEEEEEEEEESEE
T ss_pred             CCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCC-----------CCCcccEEEEEEEeeee
Confidence            99987 999999999999864321     25688886520           11256899999998764

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.76  E-value=4.8e-18  Score=142.43  Aligned_cols=101  Identities=23%  Similarity=0.457  Sum_probs=87.5

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      .+.|.|+|++|++|+..+..|.+||||++++.    ..+++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~l~~~v~d~d~   88 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVG----KTKKRTKTIYGNLNPVWEENFHFECHNS---SDRIKVRVLDEDD   88 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET----TEEEECCCCCSCSSCEEEEEEEEEECST---TCEEEEEEEECCC
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC----CEEEECCccCCCCCCCcccEEEEEecCC---CCEEEEEEEECCC
Confidence            58999999999999999999999999999993    3788999999999999999999999643   3689999999998


Q ss_pred             C-----------CCCeeeEEEEEccCCCCCcchhhhhhh
Q psy12136        352 G-----------KSNDYLGCLELCCNSKGDRLRHWVDMM  379 (399)
Q Consensus       352 ~-----------~~d~~lG~~~i~l~~~~~~~~~w~~l~  379 (399)
                      .           +++++||++.|++........+|+.|.
T Consensus        89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~w~~L~  127 (148)
T 3kwu_A           89 DIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLD  127 (148)
T ss_dssp             SHHHHHHTTTSSCSSEEEEEEEEEGGGCCSEEEEEEECB
T ss_pred             CccccccccccCCCCccEEEEEEEHHHCcCCCCEEEEcc
Confidence            5           789999999999988655555555544

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.76  E-value=8e-18  Score=141.85  Aligned_cols=117  Identities=21%  Similarity=0.264  Sum_probs=87.1

Q ss_pred             ccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC--CceEeecceeCCCCceecceEEEEeccCcccccEEEEEEE
Q psy12136        270 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW  347 (399)
Q Consensus       270 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~  347 (399)
                      +..+.|.|+|++|++|+.++..|.+||||++++.+...  ..+++|++++++.||+|||+|.|.+...   ...|.|+||
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~l~~~V~   93 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ---QHRLLFEVF   93 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT---TCEEEEEEE
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC---CCEEEEEEE
Confidence            34688999999999999998889999999999985433  2689999999999999999999999743   478999999


Q ss_pred             eCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        348 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       348 d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      |++.++++++||++.|++.+......+.      -.....+|++|.++
T Consensus        94 d~d~~~~d~~iG~~~i~l~~l~~~~~~~------~~~~~~~w~~L~~~  135 (153)
T 3b7y_A           94 DENRLTRDDFLGQVDVPLYPLPTENPRL------ERPYTFKDFVLHPR  135 (153)
T ss_dssp             ECCSSSCCEEEEEEEEECCSCCBCCTTS------CCCCCCEEEECBCS
T ss_pred             ECCCCcCCCeeEEEEEEHHHcccCCCcc------cccccccccccccc
Confidence            9999999999999999998754222110      01122478887665

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.76  E-value=4e-18  Score=138.81  Aligned_cols=93  Identities=22%  Similarity=0.377  Sum_probs=80.2

Q ss_pred             ceeEEEEEEeeecCCCC---CCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEe
Q psy12136        272 KRALIVNLIKCTNLIPM---DSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD  348 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~---~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  348 (399)
                      .+.|.|+|++|++|+.+   +..|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+...  ....|.|+|||
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d   78 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP-DSRKRTRHFNNDINPVWNETFEFILDPN--QENVLEITLMD   78 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST-TCCEECCCCTTCSSCEEEEEEEEEECTT--SCCEEEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCC-CceEEccccCCCCCCcccceEEEEecCC--CCCEEEEEEEE
Confidence            47899999999999984   556889999999997532 3789999999999999999999999633  35789999999


Q ss_pred             CCCCCCCeeeEEEEEccCCC
Q psy12136        349 KDYGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       349 ~~~~~~d~~lG~~~i~l~~~  368 (399)
                      ++..+ +++||++.|++...
T Consensus        79 ~d~~~-~~~iG~~~i~l~~l   97 (126)
T 1rlw_A           79 ANYVM-DETLGTATFTVSSM   97 (126)
T ss_dssp             CCSSC-CEEEEEEEEEGGGS
T ss_pred             CCCCC-CceeEEEEEEHHHc
Confidence            99874 89999999999864

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.75  E-value=3.1e-18  Score=141.51  Aligned_cols=107  Identities=18%  Similarity=0.260  Sum_probs=86.6

Q ss_pred             ceeEEEEEEeeecCCCCCCCCC-----------CCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCccccc
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGF-----------SDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQ  340 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~-----------~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~  340 (399)
                      .+.|.|+|++|++|++++..+.           +||||++.+.+   ....+|++++++.||+|||+|.|.+...    .
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~----~   77 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD---SRIGQTATKQKTNSPAWHDEFVTDVCNG----R   77 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT---EEEEECCCCSSCSSCEEEEEEEEEEEEE----C
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECC---eEeeeeeEECCCcCCccCCEEEEEecCC----C
Confidence            4789999999999998775433           99999999842   2567999999999999999999998632    6


Q ss_pred             EEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        341 TLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       341 ~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      .|.|+|||++.+++|++||++.|++.+          +...+......|+.|.+.
T Consensus        78 ~L~~~V~d~d~~~~dd~iG~~~i~l~~----------l~~~~~~~~~~w~~L~~~  122 (136)
T 1gmi_A           78 KIELAVFHDAPIGYDDFVANCTIQFEE----------LLQNGSRHFEDWIDLEPE  122 (136)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHH----------HTSTTCSEEEEEEECBSS
T ss_pred             EEEEEEEeCCCCCCCCEEEEEEEEHHH----------hcccCCCCccEEEEcCCC
Confidence            899999999999999999999999864          233333445778777653

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.75  E-value=1.9e-17  Score=143.01  Aligned_cols=97  Identities=24%  Similarity=0.363  Sum_probs=79.1

Q ss_pred             ccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEE
Q psy12136        270 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW  347 (399)
Q Consensus       270 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~  347 (399)
                      ...+.|.|+|++|++|+.++..|.+||||++++.+...+  .+++|++++++.||+|||+|.|.+...   ...|.|+||
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~---~~~L~~~V~   81 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ---RHRILFEVF   81 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT---TCEEEEEEE
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC---CCEEEEEEE
Confidence            346889999999999999999999999999999864332  678999999999999999999999743   468999999


Q ss_pred             eCCCCCCCeeeEEEEEccCCCC
Q psy12136        348 DKDYGKSNDYLGCLELCCNSKG  369 (399)
Q Consensus       348 d~~~~~~d~~lG~~~i~l~~~~  369 (399)
                      |++.++++++||++.|+|....
T Consensus        82 d~d~~~~d~~lG~~~i~l~~l~  103 (176)
T 3m7f_B           82 DENRLTRDDFLGQVDVPLYPLP  103 (176)
T ss_dssp             ECC----CEEEEEEEEESCSCC
T ss_pred             ECCCCCCCcEEEEEEEEHHHcc
Confidence            9999989999999999998754

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.72  E-value=3.3e-17  Score=134.54  Aligned_cols=90  Identities=23%  Similarity=0.419  Sum_probs=79.4

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      ..+|.|+|++|++|+.++..|.+||||++++.+.  ..+++|++++++.||+|||+|.|.+...    ..|.|+|||++.
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~l~~~v~d~d~   77 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS--GQCHSTDTVKNTLDPKWNQHYDLYVGKT----DSITISVWNHKK   77 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT--CCEEECCCCSSCSSCEEEEEEEEEEETT----CCEEEEEEEGGG
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC--CceEECCccCCCCCCCccCEEEEEeCCC----CEEEEEEEECCC
Confidence            3679999999999999999999999999999643  3789999999999999999999998643    349999999998


Q ss_pred             CCC---CeeeEEEEEccCC
Q psy12136        352 GKS---NDYLGCLELCCNS  367 (399)
Q Consensus       352 ~~~---d~~lG~~~i~l~~  367 (399)
                      +++   +++||++.|+++.
T Consensus        78 ~~~~~~d~~lG~~~i~l~~   96 (132)
T 3pyc_A           78 IHKKQGAGFLGCVRLLSNA   96 (132)
T ss_dssp             TTSSTTTTEEEEEEECHHH
T ss_pred             CCCCCCCCceEEEEEeHHH
Confidence            866   7999999999765

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.72  E-value=1.1e-17  Score=138.00  Aligned_cols=102  Identities=22%  Similarity=0.286  Sum_probs=86.5

Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeeccee-CCCCceecceEEEEeccCcccccEEEEEEEeC
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDK  349 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  349 (399)
                      ..+.|.|+|++|++|+..+..+.+||||++++.+    .+++|++++ ++.||+|||+|.|.+..   ....|.|+|||+
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V~d~   80 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT----QDQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKIFDK   80 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS----CEEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEECCS
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECC----ccceeEeccCCCCCCccCcEEEEEECC---CCCEEEEEEEEC
Confidence            3588999999999999999889999999999954    568999998 89999999999999973   357899999999


Q ss_pred             CCCCCCeeeEEEEEccCCC---CCcchhhhhhh
Q psy12136        350 DYGKSNDYLGCLELCCNSK---GDRLRHWVDMM  379 (399)
Q Consensus       350 ~~~~~d~~lG~~~i~l~~~---~~~~~~w~~l~  379 (399)
                      +.++++++||++.|++...   +....+|++|.
T Consensus        81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  113 (136)
T 1wfj_A           81 DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV  113 (136)
T ss_dssp             SSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCCCcEEEEee
Confidence            9998999999999998763   22234555554

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.71  E-value=6e-17  Score=131.11  Aligned_cols=121  Identities=14%  Similarity=0.210  Sum_probs=101.7

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEeccccc-CCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~-~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      --|+|+|.+|.+|+.     .+|||+++.+     ...+++|++++ ++.||+|||.|.| .+.........|.|.|+|+
T Consensus        21 msL~V~l~~a~~Lpg-----~~Dp~akv~F-----Rg~k~kTkvi~~~~~npvfnE~F~w-pl~~~ld~~e~L~v~V~d~   89 (144)
T 3l9b_A           21 MALIVHLKTVSELRG-----RADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRW-PVASSIDRNEVLEIQIFNY   89 (144)
T ss_dssp             EEEEEEEEEEESCCS-----CEEEEEEEEE-----TTEEEECCCEEEECSCEEEEEEEEE-EESSCCCTTCEEEEEEEEE
T ss_pred             EEEEEEEEEecCCCC-----CCCCeEEEEE-----eccceeeEEeccCCCCceEcceEEe-cCCCCCCCCCEEEEEEEEC
Confidence            368999999999984     5899999999     46899999998 6999999999999 5776666679999999999


Q ss_pred             CCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeeccce
Q psy12136        209 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKR  273 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~  273 (399)
                      +++++ .+||++.++|.++...+....+..|.+.            ......+.|.+.++|+|..+
T Consensus        90 ~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~------------n~~~~~a~I~l~l~Y~pp~g  143 (144)
T 3l9b_A           90 SKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD------------NNAIIKTSLSMEVRYQAADG  143 (144)
T ss_dssp             CTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECT------------TSCEEEEEEEEEEEEEETTC
T ss_pred             ccccCCCEEEEEEEEhHHhccCCeEEEeecccCC------------CCCccccEEEEEEEecCCCC
Confidence            99988 9999999999999887766666666531            11234589999999998754

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.68  E-value=2e-16  Score=135.86  Aligned_cols=89  Identities=18%  Similarity=0.179  Sum_probs=77.2

Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      ..++|.|+|++|++|+..+..+.+||||+|++.+    .+++|++++++.||+|||+|.|.+.  .  ...|.|+|||++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~----~~~kT~v~~~tlnP~Wne~f~f~v~--~--~~~L~~~V~D~d  105 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG----QSKKTEKCNNTNSPKWKQPLTVIVT--P--VSKLHFRVWSHQ  105 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT----EEEECCCCSSCSSCEEEEEEEEEEC--T--TCEEEEEEEECC
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECC----EEeEccccCCCCCCeECCEEEEEeC--C--CCEEEEEEEECC
Confidence            4578999999999999444444599999999953    7899999999999999999999984  2  578999999999


Q ss_pred             CCCCCeeeEEEEEccCC
Q psy12136        351 YGKSNDYLGCLELCCNS  367 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~  367 (399)
                      .++++++||++.|++.+
T Consensus       106 ~~~~dd~lG~~~i~l~~  122 (173)
T 2nq3_A          106 TLKSDVLLGTAALDIYE  122 (173)
T ss_dssp             SSSCCEEEEEEEEEHHH
T ss_pred             CCCCCceEEEEEEEHHH
Confidence            99999999999999875

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.66  E-value=7.1e-16  Score=126.22  Aligned_cols=85  Identities=20%  Similarity=0.337  Sum_probs=69.0

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccc-cCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC-LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~-~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      +.|.|+|++|++|+.   .+.+||||+|. .      +..+|+++ .++.||+|||+|.| .+...   ...|.|+|||+
T Consensus         5 ~~L~V~V~~A~~l~~---~g~~DPYv~v~-~------~~~kt~~~~~~t~nP~WnE~f~f-~v~~~---~~~L~~~V~D~   70 (131)
T 2cjt_A            5 SLLCVGVKKAKFDGA---QEKFNTYVTLK-V------QNVKSTTIAVRGSQPSWEQDFMF-EINRL---DLGLTVEVWNK   70 (131)
T ss_dssp             EEEEEEEEEEECSSC---GGGCEEEEEEE-E------TTEEEECCCEESSSCEEEEEEEE-EECCC---SSEEEEEEEEC
T ss_pred             eEEEEEEEEeECCCC---CCCcCeEEEEE-e------cCEEEeEecCCCCCceECCEEEE-EEeCC---CCeEEEEEEEC
Confidence            579999999998853   67899999999 2      23455554 47999999999999 56532   35799999999


Q ss_pred             CCCCC-cceeeEEecCcccCCC
Q psy12136        209 DKYGH-DFLGEARFPLNRLRPH  229 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~~~  229 (399)
                      + .++ ++||++.|+|.++...
T Consensus        71 d-~~~dd~iG~~~i~l~~l~~~   91 (131)
T 2cjt_A           71 G-LIWDTMVGTVWIPLRTIRQS   91 (131)
T ss_dssp             C-SSCEEEEEEEEEEGGGSCBC
T ss_pred             C-CCCCCeEEEEEEEHHHhhhc
Confidence            9 777 9999999999998644

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.61  E-value=3.6e-15  Score=122.05  Aligned_cols=84  Identities=15%  Similarity=0.196  Sum_probs=69.4

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecc-eeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGV-KWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      ++.|.|+|++|++|+   ..|.+||||++. .     ...+|.+ ..++.||+|||+|.|.+...   ...|.|+|||++
T Consensus         4 ~~~L~V~V~~A~~l~---~~g~~DPYv~v~-~-----~~~kt~~~~~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~d   71 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDG---AQEKFNTYVTLK-V-----QNVKSTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNKG   71 (131)
T ss_dssp             CEEEEEEEEEEECSS---CGGGCEEEEEEE-E-----TTEEEECCCEESSSCEEEEEEEEEECCC---SSEEEEEEEECC
T ss_pred             ceEEEEEEEEeECCC---CCCCcCeEEEEE-e-----cCEEEeEecCCCCCceECCEEEEEEeCC---CCeEEEEEEECC
Confidence            578999999999885   367899999999 2     2334444 45799999999999999732   457999999999


Q ss_pred             CCCCCeeeEEEEEccCCC
Q psy12136        351 YGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~~  368 (399)
                       +++|++||++.|++.+.
T Consensus        72 -~~~dd~iG~~~i~l~~l   88 (131)
T 2cjt_A           72 -LIWDTMVGTVWIPLRTI   88 (131)
T ss_dssp             -SSCEEEEEEEEEEGGGS
T ss_pred             -CCCCCeEEEEEEEHHHh
Confidence             88899999999999874

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.60  E-value=2.2e-15  Score=151.66  Aligned_cols=117  Identities=26%  Similarity=0.478  Sum_probs=97.1

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEE
Q psy12136        128 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD  207 (399)
Q Consensus       128 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d  207 (399)
                      ..++|.|+|++|++|++.+..|.+||||+|++.     ..+++|+++++++||+|||+|.| .+.  ......|+|+|||
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~-----~~~~~T~~~~~t~nP~w~e~f~f-~~~--~~~~~~l~~~v~d  456 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMG-----SQSYTTRTIQDTLNPKWNFNCQF-FIK--DLYQDVLCLTLFD  456 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-----TEEEECCCCSSCSSCEEEEEEEE-EES--CTTTCEEEEEEEE
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEEC-----CeeccCCccCCCCCCccCceEEE-Eec--CCCCCEEEEEEEe
Confidence            346899999999999999999999999999994     47899999999999999999999 454  2334789999999


Q ss_pred             cCCCCC-cceeeEEecCcccCCCcc----eeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        208 DDKYGH-DFLGEARFPLNRLRPHIS----RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       208 ~~~~~~-~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      +|..++ ++||++.++|.++..+..    ...|+.+..                ...|+|.+.+.+
T Consensus       457 ~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~----------------~~~G~i~l~~~l  506 (510)
T 3jzy_A          457 RDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE----------------VPTGEVWVRFDL  506 (510)
T ss_dssp             CCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBS----------------SSSCEEEEEEEE
T ss_pred             CCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCC----------------CCCceEEEEEEE
Confidence            999987 999999999999876543    456666642                356888887754

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.60  E-value=7.7e-15  Score=146.69  Aligned_cols=97  Identities=24%  Similarity=0.287  Sum_probs=81.2

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      +.|.|+|++|++|+. |..|.+||||+|.+.     .+++||+++++++||+|||+|.|..+...  ....|+|+|||+|
T Consensus       394 ~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~-----~~~~kTkvik~tlNP~Wne~f~f~~~~~~--~~~~L~~~V~D~D  465 (540)
T 3nsj_A          394 AHLVVSNFRAEHLWG-DYTTATDAYLKVFFG-----GQEFRTGVVWNNNNPRWTDKMDFENVLLS--TGGPLRVQVWDAD  465 (540)
T ss_dssp             EEEEEEEEEEESCCC-SSCSCCCEEEEEEET-----TEEEECCCBCSCSSCBCCCCEEEEEEETT--TCCCEEEEEEECC
T ss_pred             cEEEEEEEEccCCCc-ccCCCcCeEEEEEEC-----CEeeeeeeecCCCCCCCCeEEEEEEecCC--CCCEEEEEEEECC
Confidence            479999999999999 888999999999995     36799999999999999999999422221  2578999999999


Q ss_pred             CCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136        210 KYGH-DFLGEARFPLNRLRPHISRDLCLNL  238 (399)
Q Consensus       210 ~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L  238 (399)
                      ..++ |+||++.++|..    ..++.|+.|
T Consensus       466 ~~~~dD~LG~~~~~L~~----g~~~~~~~l  491 (540)
T 3nsj_A          466 YGWDDDLLGSCDRSPHS----GFHEVTCEL  491 (540)
T ss_dssp             SSSCCEEEEEEEECCCS----EEEEEEEEC
T ss_pred             CCCCCCEEEEEEEEeeC----CcEEEEEEc
Confidence            9988 999999999872    245566665

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.58  E-value=7.3e-15  Score=125.18  Aligned_cols=85  Identities=19%  Similarity=0.304  Sum_probs=69.1

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEeccccc-CCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~-~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      +.|.|+|++|++|+   ..+.+||||+|. .      +..||++++ ++.||+|||+|.| .+...   ...|.|+|||+
T Consensus        14 ~~L~V~V~~A~~l~---~~g~~DPYV~v~-~------~~~kt~~~~~~t~nP~WnE~f~f-~v~~~---~~~L~~~V~D~   79 (167)
T 2cjs_A           14 SLLCVGVKKAKFDG---AQEKFNTYVTLK-V------QNVESTTIAVRGSQPSWEQDFMF-EINRL---DLGLTVEVWNK   79 (167)
T ss_dssp             CEEEEEEEEEECSS---CGGGCEEEEEEE-E------TTEEEECCCEESSSCEEEEEEEE-ECCCT---TSEEEEEEEEC
T ss_pred             EEEEEEEEEEECCC---CCCCCCeEEEEE-e------cceEEEEecCCCCCCCCCCEEEE-EeeCC---CCEEEEEEEEC
Confidence            58999999999884   367899999999 2      345666654 6999999999999 46532   35799999999


Q ss_pred             CCCCC-cceeeEEecCcccCCC
Q psy12136        209 DKYGH-DFLGEARFPLNRLRPH  229 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~~~  229 (399)
                      + .++ ++||++.|+|.++...
T Consensus        80 d-~~~dd~iG~~~i~L~~l~~~  100 (167)
T 2cjs_A           80 G-LIWDTMVGTVWIPLRTIRQS  100 (167)
T ss_dssp             C-SSCCEEEEEEEEEGGGSCBC
T ss_pred             C-CCCCceEEEEEEEHHHhccc
Confidence            9 666 9999999999998643

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.57  E-value=1.5e-14  Score=147.75  Aligned_cols=123  Identities=19%  Similarity=0.332  Sum_probs=96.6

Q ss_pred             CCEEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCceEecccccCC-CCCeecceEEeceeCcccCCCceEEEEE
Q psy12136        129 TCSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRT-INPEFHEKLTFYSVSETDLSLQSLHILV  205 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t-~nP~wne~f~f~~v~~~~l~~~~L~~~V  205 (399)
                      ...|.|+|++|++|+..+.  .+.+||||+|.+.+......++||++++++ .||+|||+|.| .+...++  ..|+|.|
T Consensus       496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F-~v~~~el--~~L~~~V  572 (624)
T 1djx_A          496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF-EVTVPDL--ALVRFMV  572 (624)
T ss_dssp             CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEE-EESCGGG--CEEEEEE
T ss_pred             ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEE-EEecCCC--CEEEEEE
Confidence            4689999999999999874  688999999999653223468899999997 99999999999 5765554  6899999


Q ss_pred             EEcCCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136        206 LDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF  268 (399)
Q Consensus       206 ~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~  268 (399)
                      ||+|..++ ++||++.++|..|..+   ..|++|.....         .  .-..+.|.|.+.|
T Consensus       573 ~D~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g---------~--~~~~~~L~v~i~~  622 (624)
T 1djx_A          573 EDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNG---------D--QHPSATLFVKISI  622 (624)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTS---------C--EEEEEEEEEEEEE
T ss_pred             EEcCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCc---------C--CCCceEEEEEEEE
Confidence            99999877 9999999999999764   34777754211         0  1235677777665

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.54  E-value=1.7e-14  Score=145.04  Aligned_cols=92  Identities=28%  Similarity=0.435  Sum_probs=82.8

Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      ..+.|.|+|++|++|++.+.+|.+||||++++.    ..+++|++++++.||+|||+|.|.+.  ......|.|+|||++
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~----~~~~~T~~~~~t~nP~w~e~f~f~~~--~~~~~~l~~~v~d~d  458 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMG----SQSYTTRTIQDTLNPKWNFNCQFFIK--DLYQDVLCLTLFDRD  458 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET----TEEEECCCCSSCSSCEEEEEEEEEES--CTTTCEEEEEEEECC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEEC----CeeccCCccCCCCCCccCceEEEEec--CCCCCEEEEEEEeCC
Confidence            467899999999999999999999999999994    37899999999999999999999986  444578999999999


Q ss_pred             CCCCCeeeEEEEEccCCC
Q psy12136        351 YGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~~  368 (399)
                      .++++++||++.+++++.
T Consensus       459 ~~~~~d~lG~~~~~l~~l  476 (510)
T 3jzy_A          459 QFSPDDFLGRTEIPVAKI  476 (510)
T ss_dssp             SSSSCCEEEEEEEEHHHH
T ss_pred             CCCCCCceEEEEEEHHHh
Confidence            999999999999999864

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.54  E-value=3.5e-14  Score=141.94  Aligned_cols=90  Identities=27%  Similarity=0.561  Sum_probs=79.6

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      .+.|.|+|++|++|+. |..|.+||||+|.+.+    .+++|+++++++||+|||+|.|.+.... ....|.|+|||+|.
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~----~~~kTkvik~tlNP~Wne~f~f~~~~~~-~~~~L~~~V~D~D~  466 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG----QEFRTGVVWNNNNPRWTDKMDFENVLLS-TGGPLRVQVWDADY  466 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT----EEEECCCBCSCSSCBCCCCEEEEEEETT-TCCCEEEEEEECCS
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC----EeeeeeeecCCCCCCCCeEEEEEEecCC-CCCEEEEEEEECCC
Confidence            5789999999999998 8899999999999953    5799999999999999999999864211 35789999999999


Q ss_pred             CCCCeeeEEEEEccCC
Q psy12136        352 GKSNDYLGCLELCCNS  367 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~  367 (399)
                      .++|++||++.++|..
T Consensus       467 ~~~dD~LG~~~~~L~~  482 (540)
T 3nsj_A          467 GWDDDLLGSCDRSPHS  482 (540)
T ss_dssp             SSCCEEEEEEEECCCS
T ss_pred             CCCCCEEEEEEEEeeC
Confidence            9899999999999974

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.54  E-value=3.8e-14  Score=120.69  Aligned_cols=84  Identities=15%  Similarity=0.200  Sum_probs=69.7

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecce-eCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVK-WKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      .+.|.|+|++|++++   ..+.+||||++. .     ...+|+++ .++.||+|||+|.|.+..  . ...|.|+|||++
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~-----~~~kt~~~~~~t~nP~WnE~f~f~v~~--~-~~~L~~~V~D~d   80 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK-V-----QNVESTTIAVRGSQPSWEQDFMFEINR--L-DLGLTVEVWNKG   80 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE-E-----TTEEEECCCEESSSCEEEEEEEEECCC--T-TSEEEEEEEECC
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE-e-----cceEEEEecCCCCCCCCCCEEEEEeeC--C-CCEEEEEEEECC
Confidence            468999999999884   367899999999 2     23455555 468999999999999973  2 457999999999


Q ss_pred             CCCCCeeeEEEEEccCCC
Q psy12136        351 YGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~~  368 (399)
                       +++|++||++.|+|...
T Consensus        81 -~~~dd~iG~~~i~L~~l   97 (167)
T 2cjs_A           81 -LIWDTMVGTVWIPLRTI   97 (167)
T ss_dssp             -SSCCEEEEEEEEEGGGS
T ss_pred             -CCCCceEEEEEEEHHHh
Confidence             78899999999999874

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.54  E-value=1.2e-14  Score=149.64  Aligned_cols=105  Identities=19%  Similarity=0.300  Sum_probs=88.2

Q ss_pred             cceeEEEEEEeeecCCC---CCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEE
Q psy12136        271 KKRALIVNLIKCTNLIP---MDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW  347 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~---~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~  347 (399)
                      ..+.|.|+|++|++|+.   ++..|.+||||+|++.+.. ..+++|++++++.||+|||+|.|.+...  ....|.|+||
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~-~~k~kTkvik~tlNPvWNEtF~F~v~~~--~~~~L~~~V~   92 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP-DSRKRTRHFNNDINPVWNETFEFILDPN--QENVLEITLM   92 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTST-TCCEECCCCTTCSSCEEEEEEEEEECTT--SCCBCEEEEE
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCC-CCeEecceEcCCCCCeeeeEEEEEecCC--CCCEEEEEEE
Confidence            46899999999999998   7778899999999997532 2789999999999999999999999743  3468999999


Q ss_pred             eCCCCCCCeeeEEEEEccCCCC--Ccchhhhhhh
Q psy12136        348 DKDYGKSNDYLGCLELCCNSKG--DRLRHWVDMM  379 (399)
Q Consensus       348 d~~~~~~d~~lG~~~i~l~~~~--~~~~~w~~l~  379 (399)
                      |++.++ +++||++.|++....  ....+|++|.
T Consensus        93 D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~  125 (749)
T 1cjy_A           93 DANYVM-DETLGTATFTVSSMKVGEKKEVPFIFN  125 (749)
T ss_dssp             ECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred             ECCCCC-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence            999998 999999999998743  3345565554

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.54  E-value=4.2e-14  Score=146.78  Aligned_cols=123  Identities=32%  Similarity=0.465  Sum_probs=105.8

Q ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeC
Q psy12136        113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS  192 (399)
Q Consensus       113 ~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~  192 (399)
                      ....|.|.+++.|+  .+.|.|.|++|++|.+++..|.+||||++.+.++.....+++|+++++++||+|||+|.| .+.
T Consensus       157 ~~~~g~i~~~~~~~--~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f-~~~  233 (674)
T 3pfq_A          157 TERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRF-QLK  233 (674)
T ss_dssp             SCCSCEEEEEEEEC--SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEE-ECC
T ss_pred             ccccccccccceec--cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeee-ecc
Confidence            45678999999884  789999999999999999999999999999988776678899999999999999999999 465


Q ss_pred             cccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        193 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       193 ~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ..+. ...|.|+|||++..++ ++||++.+++.++.... ...|+.|..
T Consensus       234 ~~~~-~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls  280 (674)
T 3pfq_A          234 ESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLS  280 (674)
T ss_dssp             STTT-TCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred             cCCc-cceeeeEEeecccccccccccccccchhhhccCC-cccceeecc
Confidence            5443 4579999999999988 99999999999987654 466777643

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.53  E-value=1.4e-14  Score=149.27  Aligned_cols=107  Identities=21%  Similarity=0.358  Sum_probs=92.8

Q ss_pred             CCEEEEEEEEecCCCC---CCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEE
Q psy12136        129 TCSLHVTLHRAKGLRA---MDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV  205 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~---~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V  205 (399)
                      .++|.|+|++|++|++   ++..|.+||||+|++.+..  ..++||+++++++||+|||+|.| .+...  ....|+|+|
T Consensus        17 ~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~--~~k~kTkvik~tlNPvWNEtF~F-~v~~~--~~~~L~~~V   91 (749)
T 1cjy_A           17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEF-ILDPN--QENVLEITL   91 (749)
T ss_dssp             CEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEE-EECTT--SCCBCEEEE
T ss_pred             ccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCC--CCeEecceEcCCCCCeeeeEEEE-EecCC--CCCEEEEEE
Confidence            4689999999999998   7778899999999997532  36899999999999999999999 46543  246899999


Q ss_pred             EEcCCCCCcceeeEEecCcccCCCcceeEEEeecc
Q psy12136        206 LDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       206 ~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ||+|..++++||++.|+|.++..+..+..|+.|..
T Consensus        92 ~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           92 MDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             EECCSSSCEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred             EECCCCCCceeEEEEEEHHHcCCCCceEEEEecCC
Confidence            99998878899999999999988877888888864

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.53  E-value=2.2e-14  Score=148.88  Aligned_cols=126  Identities=31%  Similarity=0.587  Sum_probs=106.5

Q ss_pred             ccccccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEE
Q psy12136        253 EEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE  331 (399)
Q Consensus       253 ~~~~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~  331 (399)
                      .+.....|.|.+++.+.  .+.|.|.|++|++|.+++.+|.+||||++.+.++... .+++|++++++.||.|||+|.|.
T Consensus       154 ~d~~~~~g~i~~~~~~~--~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~  231 (674)
T 3pfq_A          154 TDHTERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ  231 (674)
T ss_dssp             SCSSCCSCEEEEEEEEC--SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEE
T ss_pred             cccccccccccccceec--cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeee
Confidence            34456788888887765  5789999999999999999999999999999876544 78999999999999999999999


Q ss_pred             eccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCC-CCcchhhhhhhcC
Q psy12136        332 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK-GDRLRHWVDMMKY  381 (399)
Q Consensus       332 v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~-~~~~~~w~~l~~~  381 (399)
                      +...+. ...|.|+|||++..++|++||.+.+++++. ..+..+|+.++..
T Consensus       232 ~~~~~~-~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls~  281 (674)
T 3pfq_A          232 LKESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQ  281 (674)
T ss_dssp             CCSTTT-TCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCCEEEEEECBCT
T ss_pred             cccCCc-cceeeeEEeecccccccccccccccchhhhccCCcccceeeccc
Confidence            875543 467999999999999999999999999863 3456778877653

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.52  E-value=3.9e-14  Score=144.62  Aligned_cols=112  Identities=22%  Similarity=0.309  Sum_probs=92.1

Q ss_pred             cceeEEEEEEeeecCCCCCC--CCCCCcEEEEEEecCCCC-ceEeecceeCC-CCceecceEEEEeccCcccccEEEEEE
Q psy12136        271 KKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHK-RKYKTGVKWKT-LNPIFNEEFAIETKITELSKQTLVITV  346 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~--~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~l~i~V  346 (399)
                      ..+.|.|+|++|++|+..+.  .+.+||||+|.+.+.... .+++|++++++ .||+|||+|.|.+...++  ..|.|.|
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el--~~L~~~V  572 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMV  572 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGG--CEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCC--CEEEEEE
Confidence            35789999999999998873  688999999999753222 68899999998 999999999999975554  5899999


Q ss_pred             EeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCc
Q psy12136        347 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK  385 (399)
Q Consensus       347 ~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~  385 (399)
                      ||++.++++++||++.|++.....++. |..|...-+..
T Consensus       573 ~D~D~~~~dd~iG~~~ipl~~L~~G~r-~v~L~d~~g~~  610 (624)
T 1djx_A          573 EDYDSSSKNDFIGQSTIPWNSLKQGYR-HVHLLSKNGDQ  610 (624)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGBCCEEE-EEEEECTTSCE
T ss_pred             EEcCCCCCCceeEEEEEEHHHcCCCcE-EEeCCCCCcCC
Confidence            999999999999999999998765553 56665554443

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.52  E-value=8.2e-14  Score=112.77  Aligned_cols=106  Identities=18%  Similarity=0.179  Sum_probs=85.6

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeeccee-CCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      ..-|+|.|.+|.+|+     |.+|||+++.+    ++.++||++++ ++.||+|||.|+|++......+..|.|.|+|++
T Consensus        20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~F----Rg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~   90 (144)
T 3l9b_A           20 HMALIVHLKTVSELR-----GRADRIAKVTF----RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS   90 (144)
T ss_dssp             CEEEEEEEEEEESCC-----SCEEEEEEEEE----TTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC
T ss_pred             cEEEEEEEEEecCCC-----CCCCCeEEEEE----eccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc
Confidence            356899999999998     47999999999    34899999998 699999999999999876677789999999999


Q ss_pred             CCCCCeeeEEEEEccCCC--CCcchhhhhhhcCCCCce
Q psy12136        351 YGKSNDYLGCLELCCNSK--GDRLRHWVDMMKYPDHKH  386 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~~--~~~~~~w~~l~~~p~~~~  386 (399)
                      .++++.+||++.|.|...  ...+.-+..|++...+.+
T Consensus        91 ~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~  128 (144)
T 3l9b_A           91 KVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAII  128 (144)
T ss_dssp             TTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEE
T ss_pred             cccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCcc
Confidence            999999999999998752  222333344444444443

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.41  E-value=1.8e-14  Score=143.35  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=12.2

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCC---CCCeecceEEeceeCcccCCCceEEEEEE
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRT---INPEFHEKLTFYSVSETDLSLQSLHILVL  206 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t---~nP~wne~f~f~~v~~~~l~~~~L~~~V~  206 (399)
                      +.|+|+|++|++|++++     ||||++++.+    ....||++++++   +||+|||+|.|. +.+.   ...|.|+||
T Consensus        11 ~~L~V~VieAk~L~~~d-----dpYv~v~l~~----~~~~kT~v~~kt~~glnP~WnE~F~f~-~~~~---~~~L~v~V~   77 (483)
T 3bxj_A           11 NVLKLWIIEARELPPKK-----RYYCELCLDD----MLYARTTSKPRSASGDTVFWGEHFEFN-NLPA---VRALRLHLY   77 (483)
T ss_dssp             ECC------------------------------------------------------CCEECC-----------------
T ss_pred             cEEEEEEEEcCCcCCCC-----CCeEEEEECC----eEEeeeeEEeCCCCCCCCccccEEEEe-cCCC---ccEEEEEEE
Confidence            47999999999999887     9999999952    346799999999   999999999994 3322   268999999


Q ss_pred             E-cC---CCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        207 D-DD---KYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       207 d-~~---~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      | ++   ..++ ++||++.|++.++..+.....|++|..
T Consensus        78 d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           78 RDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             -----------------------------CCEECC----
T ss_pred             ecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence            9 45   2455 999999999999988777777877753

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.27  E-value=3.9e-13  Score=133.76  Aligned_cols=97  Identities=15%  Similarity=0.246  Sum_probs=12.5

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCC---CCceecceEEEEeccCcccccEEEEEEEe
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT---LNPIFNEEFAIETKITELSKQTLVITVWD  348 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t---~nP~wne~f~f~v~~~~l~~~~l~i~V~d  348 (399)
                      .+.|.|+|++|++|++++     ||||++++.+   ....||++++++   .||+|||+|.|.+...   ...|.|+|||
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~---~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~---~~~L~v~V~d   78 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDD---MLYARTTSKPRSASGDTVFWGEHFEFNNLPA---VRALRLHLYR   78 (483)
T ss_dssp             EECC-----------------------------------------------------CCEECC-----------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECC---eEEeeeeEEeCCCCCCCCccccEEEEecCCC---ccEEEEEEEe
Confidence            478999999999998875     8999999953   246799999999   9999999999997432   3689999999


Q ss_pred             C-C---CCCCCeeeEEEEEccCCC--CCcchhhhhhh
Q psy12136        349 K-D---YGKSNDYLGCLELCCNSK--GDRLRHWVDMM  379 (399)
Q Consensus       349 ~-~---~~~~d~~lG~~~i~l~~~--~~~~~~w~~l~  379 (399)
                      . +   ..++|++||++.|++...  +...++|++|.
T Consensus        79 ~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           79 DSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             ----------------------------CCEECC---
T ss_pred             cCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence            4 4   367899999999999874  34556676664

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.26  E-value=4.9e-11  Score=124.86  Aligned_cols=117  Identities=20%  Similarity=0.278  Sum_probs=85.6

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCceEecccccC-CCCCeecc-eEEeceeCcccCCCceEEEEEE
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLR-TINPEFHE-KLTFYSVSETDLSLQSLHILVL  206 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~rT~~~~~-t~nP~wne-~f~f~~v~~~~l~~~~L~~~V~  206 (399)
                      ..|.|+|++|++|+..    .+||||+|.+.+... ...++||+++++ +.||+||| +|.|..|...++  ..|+|.||
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~  798 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAF  798 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEE
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEE
Confidence            3799999999999864    489999999975221 124579999876 59999999 699943655554  57999999


Q ss_pred             EcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        207 DDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       207 d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      |++   +++||++.+||..|..+-   .+++|.....           ..-..|.|.+.+.+.
T Consensus       799 D~d---ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g-----------~~l~~atLfv~i~~~  844 (885)
T 3ohm_B          799 EEG---GKFVGHRILPVSAIRSGY---HYVCLRNEAN-----------QPLCLPALLIYTEAS  844 (885)
T ss_dssp             ETT---TEEEEEEEEETTTCCCEE---EEEEEECTTS-----------CEEEEEEEEEEEEEE
T ss_pred             cCC---ccEEeeEEEEHHHcCCCc---eEEEecCCCC-----------CccCceEEEEEEEEE
Confidence            987   599999999999998652   3466754211           012456677666554

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.25  E-value=6e-11  Score=123.53  Aligned_cols=99  Identities=20%  Similarity=0.413  Sum_probs=78.2

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC--ceEecccccC-CCCCeecce-EEeceeCcccCCCceEEEEE
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS--HRLRTKTCLR-TINPEFHEK-LTFYSVSETDLSLQSLHILV  205 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~--~~~rT~~~~~-t~nP~wne~-f~f~~v~~~~l~~~~L~~~V  205 (399)
                      ..|.|+|++|++|+..    .+||||+|.+.+.....  .++||+++++ +.||+|||+ |.|..|...++  ..|+|.|
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~V  723 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRIIV  723 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEEE
Confidence            4799999999999864    48999999997522222  5789999876 699999998 99942665555  5899999


Q ss_pred             EEcCCCCCcceeeEEecCcccCCCcceeEEEeecc
Q psy12136        206 LDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       206 ~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ||++   .++||++.+||..|..+-   .+++|..
T Consensus       724 ~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~  752 (816)
T 3qr0_A          724 SEEN---GKFIGHRVMPLDGIKPGY---RHVPLRN  752 (816)
T ss_dssp             EETT---SCEEEEEEEESTTCCCEE---EEEEEEC
T ss_pred             EecC---CCeeeEEEEEHHHcCCcc---eEEEEeC
Confidence            9985   499999999999998652   3466754

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.22  E-value=9.7e-11  Score=122.46  Aligned_cols=99  Identities=26%  Similarity=0.425  Sum_probs=77.5

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCC-CCCceEecc-cccC-CCCCeecc-eEEeceeCcccCCCceEEEEE
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTK-TCLR-TINPEFHE-KLTFYSVSETDLSLQSLHILV  205 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~rT~-~~~~-t~nP~wne-~f~f~~v~~~~l~~~~L~~~V  205 (399)
                      +.|.|+|++|++|+.    +.+||||+|.+.+.. ...+++||+ ++++ +.||+||| +|.|..|...++  ..|+|.|
T Consensus       678 ~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el--~~Lr~~V  751 (799)
T 2zkm_X          678 TTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAV  751 (799)
T ss_dssp             EEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEE
T ss_pred             eeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc--cEEEEEE
Confidence            479999999999985    358999999996422 112468999 7764 69999999 699933655555  4899999


Q ss_pred             EEcCCCCCcceeeEEecCcccCCCcceeEEEeecc
Q psy12136        206 LDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       206 ~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ||++   +++||++.+||..|..+   ..+++|..
T Consensus       752 ~D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~  780 (799)
T 2zkm_X          752 MEEG---NKFLGHRIIPINALNSG---YHHLCLHS  780 (799)
T ss_dssp             EETT---TEEEEEEEEEGGGBCCE---EEEEEEEC
T ss_pred             EEeC---CCccceEeeehhhcCCC---cEEEeccC
Confidence            9986   59999999999999754   34667753

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.15  E-value=1.3e-10  Score=121.54  Aligned_cols=100  Identities=18%  Similarity=0.262  Sum_probs=79.1

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCC-C-CceEeecceeC-CCCceecc-eEEEE-eccCcccccEEEEEEE
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-H-KRKYKTGVKWK-TLNPIFNE-EFAIE-TKITELSKQTLVITVW  347 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~-~-~~~~kT~v~~~-t~nP~wne-~f~f~-v~~~~l~~~~l~i~V~  347 (399)
                      ..|.|+|+.|++|+..    .+||||+|.+.+.. . ..+++|+++++ +.||+||| +|.|. |...++  ..|.|+||
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~  798 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAF  798 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEE
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEE
Confidence            4799999999999752    58999999997522 1 24689999876 59999999 69998 765554  48999999


Q ss_pred             eCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCC
Q psy12136        348 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD  383 (399)
Q Consensus       348 d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~  383 (399)
                      |++    +++||++.|+|+....+++|. .|++.-+
T Consensus       799 D~d----ddfiG~~~lpL~~L~~GyR~v-pL~~~~g  829 (885)
T 3ohm_B          799 EEG----GKFVGHRILPVSAIRSGYHYV-CLRNEAN  829 (885)
T ss_dssp             ETT----TEEEEEEEEETTTCCCEEEEE-EEECTTS
T ss_pred             cCC----ccEEeeEEEEHHHcCCCceEE-EecCCCC
Confidence            986    789999999999988777653 4444433

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.13  E-value=1.7e-10  Score=120.62  Aligned_cols=98  Identities=20%  Similarity=0.320  Sum_probs=77.4

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC--CceEeec-ceeC-CCCceecc-eEEE-EeccCcccccEEEEE
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTG-VKWK-TLNPIFNE-EFAI-ETKITELSKQTLVIT  345 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~--~~~~kT~-v~~~-t~nP~wne-~f~f-~v~~~~l~~~~l~i~  345 (399)
                      .+.|.|.|++|++|+.    +.+||||+|.+.+...  ..+++|+ ++++ +.||+||| +|.| .|..+++.  .|.|.
T Consensus       677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~--~Lr~~  750 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELA--SLRVA  750 (799)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGC--EEEEE
T ss_pred             eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCcc--EEEEE
Confidence            4689999999999974    4689999999975321  2468999 7764 69999999 7999 88766654  89999


Q ss_pred             EEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhc
Q psy12136        346 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK  380 (399)
Q Consensus       346 V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~  380 (399)
                      |||++    +++||++.|+++....++. |..|..
T Consensus       751 V~D~d----~d~iG~~~ipl~~L~~G~r-~v~L~~  780 (799)
T 2zkm_X          751 VMEEG----NKFLGHRIIPINALNSGYH-HLCLHS  780 (799)
T ss_dssp             EEETT----TEEEEEEEEEGGGBCCEEE-EEEEEC
T ss_pred             EEEeC----CCccceEeeehhhcCCCcE-EEeccC
Confidence            99986    7899999999998766554 344443

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.12  E-value=2.1e-10  Score=119.38  Aligned_cols=100  Identities=15%  Similarity=0.299  Sum_probs=79.9

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC-C--ceEeecceeC-CCCceecce-EEEE-eccCcccccEEEEEE
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-K--RKYKTGVKWK-TLNPIFNEE-FAIE-TKITELSKQTLVITV  346 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~-~--~~~kT~v~~~-t~nP~wne~-f~f~-v~~~~l~~~~l~i~V  346 (399)
                      ..|.|+|+.|++|+..    .+||||+|.+.+... .  .+++|+++++ +.||+|||+ |.|. |..+++  ..|.|.|
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~V  723 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRIIV  723 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEEE
Confidence            6799999999999753    589999999975321 1  5789999886 599999998 9998 765555  5899999


Q ss_pred             EeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCC
Q psy12136        347 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD  383 (399)
Q Consensus       347 ~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~  383 (399)
                      ||++    +++||++.|+|+....+++| ..|++.-+
T Consensus       724 ~D~d----ddfiG~~~ipL~~L~~GyR~-vpL~~~~g  755 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLDGIKPGYRH-VPLRNESN  755 (816)
T ss_dssp             EETT----SCEEEEEEEESTTCCCEEEE-EEEECTTS
T ss_pred             EecC----CCeeeEEEEEHHHcCCcceE-EEEeCCCC
Confidence            9984    78999999999998877765 34544433

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.94  E-value=1.3e-08  Score=79.92  Aligned_cols=113  Identities=14%  Similarity=0.256  Sum_probs=79.7

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEec-ccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT-KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT-~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      .-|+|...++.--.-+......||||.|.+..... ....+| .++++|..|+|||+|.- .|...    ..|.|.|++.
T Consensus         6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~-~e~g~t~~~K~kT~~P~Wne~Fd~-~V~~G----r~l~i~Vfh~   79 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALS-TERGKTLVQKKPTMYPEWKSTFDA-HIYEG----RVIQIVLMRA   79 (126)
T ss_dssp             CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEE-ETTEEEEECCSCCBCCCTTCEEEE-ECCTT----CEEEEEEEEE
T ss_pred             ccEEeeeccccccccCCccccCCceEEEEeeeeEE-cccceeecccCCCCCcCccceEEe-eeeCC----EEEEEEEEcC
Confidence            34667665554322222234689999999853110 112355 67888999999999987 45443    7899999975


Q ss_pred             CCCCCcceeeEEecCcccC-----CCcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        209 DKYGHDFLGEARFPLNRLR-----PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       209 ~~~~~~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      ..   +|++.|++++.+|.     .+...+.|++|+                  ..|+|++.+.|.
T Consensus        80 a~---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe------------------P~Gkl~~~i~~~  124 (126)
T 1yrk_A           80 AE---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ------------------PQAKVLMSVQYF  124 (126)
T ss_dssp             TT---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB------------------SSCEEEEEEEEE
T ss_pred             CC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc------------------cCcEEEEEEEEe
Confidence            54   99999999999988     334557899985                  479999988775

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.90  E-value=1.4e-08  Score=80.80  Aligned_cols=112  Identities=14%  Similarity=0.257  Sum_probs=79.0

Q ss_pred             EEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEec-ccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        131 SLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRT-KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT-~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      -|+|.+.++.-.+... .....||||.|.+.... .....+| .++++|..|+|||.|.- .|...    ..|.|.|++.
T Consensus        11 flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~-~te~gqtl~~KkkT~~P~Wne~Fd~-~V~~G----r~l~i~Vfh~   84 (138)
T 2enj_A           11 FLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYV-ESENGQMYIQKKPTMYPPWDSTFDA-HINKG----RVMQIIVKGK   84 (138)
T ss_dssp             CEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEE-EETTEEEEEEEEEEECCCSSSEEEE-CCCSS----CEEEEEEECS
T ss_pred             ceEEEeeccccCCCCCcccccCCceEEEEeeeee-eccCceeecccCCCCCccccceEee-eEECC----eEEEEEEEcC
Confidence            4566665554333222 13358999999985310 0123566 66778999999999987 34433    7899999954


Q ss_pred             CCCCCcceeeEEecCcccC-----CCcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        209 DKYGHDFLGEARFPLNRLR-----PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       209 ~~~~~~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      ..   +|++.|+|++.+|.     .+...+.|++|+                  ..|+|++.+.|.
T Consensus        85 a~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe------------------P~Gkl~v~i~~~  129 (138)
T 2enj_A           85 NV---DLISETTVELYSLAERCRKNNGKTEIWLELK------------------PQGRMLMNARYF  129 (138)
T ss_dssp             SC---SCCEEEEEESHHHHHHHHHTTTCEEEEEECB------------------SSCEEEEEEEEC
T ss_pred             CC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc------------------cCcEEEEEEEEE
Confidence            44   99999999999998     344568899995                  479999998875

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.36  E-value=3.8e-06  Score=65.91  Aligned_cols=106  Identities=14%  Similarity=0.098  Sum_probs=70.9

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEee-cceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKT-GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT-~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      ..|+|.+.++.--+.+......||||.|.+.........+| ..+++|..|+||+.|.-.+..    .+.|.|.|++...
T Consensus         6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh~a~   81 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMRAAE   81 (126)
T ss_dssp             CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT----TCEEEEEEEEETT
T ss_pred             ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC----CEEEEEEEEcCCC
Confidence            34566665554322222334689999999853111112355 667889999999999988863    4789999996543


Q ss_pred             CCCCeeeEEEEEccCCCCCcchhhhhhhcC---CCCceeeEEeCCCCC
Q psy12136        352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKY---PDHKHEGIHNLSIKP  396 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~---p~~~~~~Wh~L~~~~  396 (399)
                          +++..++|.+..          |+.+   .+....-|-.|+|..
T Consensus        82 ----~fvAn~tV~~ed----------L~~~c~~~~g~~e~WvdLeP~G  115 (126)
T 1yrk_A           82 ----EPVSEVTVGVSV----------LAERCKKNNGKAEFWLDLQPQA  115 (126)
T ss_dssp             ----EEEEEEEEEHHH----------HHHHHHTTTTEEEEEEECBSSC
T ss_pred             ----CeeeEEEEEHHH----------HHhhhccCCCceEEEEecccCc
Confidence                899999999764          2211   234567888888754

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.29  E-value=4.4e-06  Score=66.43  Aligned_cols=105  Identities=15%  Similarity=0.108  Sum_probs=69.5

Q ss_pred             eeEEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCCceEee-cceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136        273 RALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKT-GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~~~~kT-~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      ..|+|.+.++.-.+.+. .....||||.|.+.........+| ..+++|..|+||+.|.-.|..    .+.|.|.|++..
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh~a   85 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK----GRVMQIIVKGKN   85 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS----SCEEEEEEECSS
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC----CeEEEEEEEcCC
Confidence            34566665555333222 234689999999853211023666 667789999999999988863    478999999644


Q ss_pred             CCCCCeeeEEEEEccCCCCCcchhhhhhhcC---CCCceeeEEeCCCC
Q psy12136        351 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKY---PDHKHEGIHNLSIK  395 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~---p~~~~~~Wh~L~~~  395 (399)
                      .    ++|..++|.+..          |+.+   .+....-|..|+|.
T Consensus        86 ~----~fVAn~tV~~ed----------L~~~ck~~~g~~e~WvdLeP~  119 (138)
T 2enj_A           86 V----DLISETTVELYS----------LAERCRKNNGKTEIWLELKPQ  119 (138)
T ss_dssp             C----SCCEEEEEESHH----------HHHHHHHTTTCEEEEEECBSS
T ss_pred             C----CeeeEEEEEHHH----------HHhhhccCCCceEEEEecccC
Confidence            3    899999999864          2211   23355677777765

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=95.25  E-value=0.31  Score=42.14  Aligned_cols=59  Identities=15%  Similarity=0.227  Sum_probs=48.6

Q ss_pred             ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC----CCCeeeEEEEEccCC
Q psy12136        309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG----KSNDYLGCLELCCNS  367 (399)
Q Consensus       309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~----~~d~~lG~~~i~l~~  367 (399)
                      ..++|.|...+.+|.|+|++.+.++.+...+..|.|++++....    ..+..+|-+.++|-.
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            67899999999999999999999998888888999999876532    123478999999754

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=94.80  E-value=0.14  Score=54.28  Aligned_cols=94  Identities=9%  Similarity=0.089  Sum_probs=67.7

Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEE
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVW  347 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~  347 (399)
                      -...+.|.|..+.++...   ...+-||++.+..++..  ....|..+....+|.|||.+.|++...++. ++.|.|+||
T Consensus       215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence            357899999999998653   35788999988754432  345566566677899999999998776665 568999999


Q ss_pred             eCCCC--C----------CCeeeEEEEEccCC
Q psy12136        348 DKDYG--K----------SNDYLGCLELCCNS  367 (399)
Q Consensus       348 d~~~~--~----------~d~~lG~~~i~l~~  367 (399)
                      +....  +          ....||.+.+.+-.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  323 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFD  323 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBC
T ss_pred             EecCCccCccccccccccccceEEEEeeeEEC
Confidence            96321  1          24589999999765

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=94.70  E-value=0.45  Score=41.13  Aligned_cols=59  Identities=12%  Similarity=0.174  Sum_probs=47.5

Q ss_pred             CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC----CC-cceeeEEecCcc
Q psy12136        166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY----GH-DFLGEARFPLNR  225 (399)
Q Consensus       166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~----~~-~~lG~~~i~l~~  225 (399)
                      ...++|.|...+.+|.|+|++.+ .++.+.....-|.|++++....    .. ..+|-+.+||-.
T Consensus        76 ~se~~S~V~YHnk~P~w~EtIKi-~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           76 ISEYKSVIYYQVKQPRWFETVKV-AIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             BSCEECCCCTTCSSCCCCEEEEE-EECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             ceeEEEEEEEcCCCCCceEeEEE-eeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            46789999999999999999999 7999988889999999875532    11 457888887754

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=93.73  E-value=0.39  Score=51.37  Aligned_cols=97  Identities=12%  Similarity=0.108  Sum_probs=68.3

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCc-eEecccccCCCCCeecceEEeceeCcccCC-CceEEEEE
Q psy12136        128 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSH-RLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILV  205 (399)
Q Consensus       128 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V  205 (399)
                      -...++|+|+.+.++.... ....+-||.+.+-.++.... ..+|+.+ ...+|.|||.+.| .+...++. ...|.|+|
T Consensus       353 ~~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f-~i~i~dLPr~arL~~tl  429 (1091)
T 3hhm_A          353 INSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNY-DIYIPDLPRAARLCLSI  429 (1091)
T ss_dssp             CCSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEE-EEEGGGCCTTCEEEEEE
T ss_pred             CCCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEe-cCccccCChhcEEEEEE
Confidence            3578999999999886432 33468899999976554443 3445444 4567889999999 57766654 47899999


Q ss_pred             EEcCCC----CC-cceeeEEecCcccC
Q psy12136        206 LDDDKY----GH-DFLGEARFPLNRLR  227 (399)
Q Consensus       206 ~d~~~~----~~-~~lG~~~i~l~~l~  227 (399)
                      |+....    .. ..||.+.++|-+..
T Consensus       430 ~~~~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          430 CSVKGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             CCCCCCC-------CCEEEEEESBCTT
T ss_pred             EEecCccCcccccceeEEeeeeeEccC
Confidence            986542    13 57999998887654

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=93.13  E-value=0.46  Score=50.81  Aligned_cols=94  Identities=13%  Similarity=0.080  Sum_probs=66.5

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEe
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWD  348 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d  348 (399)
                      ...+.|+|..+.++... .....+-||++.+..++..  ....|..+. ..+|.|||.++|++...++. +..|.|+||+
T Consensus       354 ~~~f~v~i~~~~~~n~~-~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVN-IRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCCC-CSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCC-ccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            46889999999888643 2334688999998865543  344555443 45788999999998766655 4689999998


Q ss_pred             CCCC----CCCeeeEEEEEccCC
Q psy12136        349 KDYG----KSNDYLGCLELCCNS  367 (399)
Q Consensus       349 ~~~~----~~d~~lG~~~i~l~~  367 (399)
                      ....    .....||.+.+.+-.
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd  454 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFD  454 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBC
T ss_pred             ecCccCcccccceeEEeeeeeEc
Confidence            6542    124579999999765

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=92.71  E-value=0.4  Score=50.82  Aligned_cols=96  Identities=13%  Similarity=0.120  Sum_probs=66.6

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-CceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEE
Q psy12136        128 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT-SHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILV  205 (399)
Q Consensus       128 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~-~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V  205 (399)
                      -...|.|+|..+.++...   ...+-||.+.+-.++.. .....|..+....+|.|||.+.| .+...++. ...|.|+|
T Consensus       215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f-~i~i~dLPr~a~L~~ti  290 (940)
T 2wxf_A          215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEF-DISVCDLPRMARLCFAL  290 (940)
T ss_dssp             CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEE-EEEGGGCCTTCEEEEEE
T ss_pred             cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEc-ccccccCCcccEEEEEE
Confidence            457899999999998754   34688999888654332 23455666655788999999999 57766654 47899999


Q ss_pred             EEcCCC--C----------C-cceeeEEecCcccC
Q psy12136        206 LDDDKY--G----------H-DFLGEARFPLNRLR  227 (399)
Q Consensus       206 ~d~~~~--~----------~-~~lG~~~i~l~~l~  227 (399)
                      |+....  +          . ..||.+.++|-+..
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EEEC----------------CEEEEEEEEESBCTT
T ss_pred             EEecCCccCccccccccccccceEEEEeeeEECCc
Confidence            996321  1          2 47888888886643

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=90.09  E-value=0.23  Score=53.29  Aligned_cols=94  Identities=13%  Similarity=0.107  Sum_probs=64.8

Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEE
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVW  347 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~  347 (399)
                      -...+.|+|..+.++...   ...+-||++.+..++..  ....|..+....+|.|||.+.|++...++. +..|.|+||
T Consensus       351 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~  427 (1092)
T 2y3a_A          351 NNNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVY  427 (1092)
T ss_dssp             CCSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECC
T ss_pred             cCCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEE
Confidence            357899999999998653   35788999877654322  344455555567899999999998776666 467999999


Q ss_pred             eCCCC----------------------CCCeeeEEEEEccCC
Q psy12136        348 DKDYG----------------------KSNDYLGCLELCCNS  367 (399)
Q Consensus       348 d~~~~----------------------~~d~~lG~~~i~l~~  367 (399)
                      +....                      +....||.+.+.+-.
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  469 (1092)
T 2y3a_A          428 AVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFD  469 (1092)
T ss_dssp             CC------------------------------CCEEEEESBC
T ss_pred             EecCccccccccccccccccccccccccccceeEEEeeeeEC
Confidence            86310                      113489999888764

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=87.44  E-value=1.5  Score=35.69  Aligned_cols=124  Identities=10%  Similarity=0.125  Sum_probs=75.6

Q ss_pred             CCEEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC-----CCceE
Q psy12136        129 TCSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL-----SLQSL  201 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l-----~~~~L  201 (399)
                      .+.+.++|.++. |.+...  .+..+|..-+.+.=  -..+.+.|.++. +.+|.||-+-.| .|..+++     ....|
T Consensus        17 EnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF--~dfEtq~Tpv~~-G~~p~y~fts~Y-~V~~d~~fl~yL~~~~l   91 (156)
T 2yrb_A           17 ENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAF--YDFELQTTPVVR-GLHPEYNFTSQY-LVHVNDLFLQYIQKNTI   91 (156)
T ss_dssp             CEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECS--TTCCCEECCCEE-SSSCCCCEEEEE-EECCSHHHHHHHHHCCE
T ss_pred             CcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEE--eceEeeeccccc-CCCCCcceEEEE-EEEeCHHHHHHHhcCCE
Confidence            456777787775 322111  12245554444421  124567777775 889999998888 5765543     34678


Q ss_pred             EEEEEEcCCCCC-cceeeEEecCcccCCCcc-eeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        202 HILVLDDDKYGH-DFLGEARFPLNRLRPHIS-RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       202 ~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      .++++... ..+ +.||.+.|+|..+...+. ......|...   .      +  .....|.|...+++.
T Consensus        92 ~lELhqa~-g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~---~------g--~~~~~G~LeywiRL~  149 (156)
T 2yrb_A           92 TLEVHQAY-STEYETIAACQLKFHEILEKSGRIFCTASLIGT---K------G--DIPNFGTVEYWFRLR  149 (156)
T ss_dssp             EEEEEEEC-SSCEEEEEEEEECCSHHHHCCSCEEEEEEECBS---S------S--CCTTSEEEEEEEEEE
T ss_pred             EEEEEEee-CCCceEEEEEEEEhHHhhCcCCceEEEEEEEcC---C------C--CcceEEEEEEEEEEe
Confidence            99998864 346 899999999999885544 2233344210   0      0  013578777776654

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=86.50  E-value=0.51  Score=50.68  Aligned_cols=77  Identities=17%  Similarity=0.200  Sum_probs=55.6

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-ceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEE
Q psy12136        128 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS-HRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILV  205 (399)
Q Consensus       128 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~-~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V  205 (399)
                      -...++|+|..+.++...   ...+-||.+.+-.++... ....|..+.-..+|.|||.+.| .+...++. ...|.|+|
T Consensus       351 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f-~i~~~dLPr~a~L~~ti  426 (1092)
T 2y3a_A          351 NNNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEF-DINICDLPRMARLCFAV  426 (1092)
T ss_dssp             CCSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEE-EEESSSCCTTCEEEEEC
T ss_pred             cCCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEe-CCccccCChhcEEEEEE
Confidence            457899999999998754   346788888875433222 2344555555778999999999 57766654 47899999


Q ss_pred             EEc
Q psy12136        206 LDD  208 (399)
Q Consensus       206 ~d~  208 (399)
                      |+.
T Consensus       427 ~~~  429 (1092)
T 2y3a_A          427 YAV  429 (1092)
T ss_dssp             CCC
T ss_pred             EEe
Confidence            986

>2qzq_A Axin interactor, dorsalization associated protein; beta sheet sandwich, coiled coil, signaling protein, lipid binding protein; 1.90A {Danio rerio} PDB: 2qz5_A

Probab=82.66  E-value=4  Score=32.86  Aligned_cols=109  Identities=15%  Similarity=0.085  Sum_probs=63.0

Q ss_pred             ccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC---ceEeecce--eCCCCceecceEEEEeccCccc-ccEEE
Q psy12136        270 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVK--WKTLNPIFNEEFAIETKITELS-KQTLV  343 (399)
Q Consensus       270 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~---~~~kT~v~--~~t~nP~wne~f~f~v~~~~l~-~~~l~  343 (399)
                      |....|.|.|.+. +|.  |.....|||+.|++....+.   ..+.|.+.  +....-.||..++.+.+.+.+. +..|.
T Consensus        11 pg~t~l~v~Ie~i-glk--da~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~G~aiv   87 (152)
T 2qzq_A           11 PGMTLLTLTIEKI-GLK--DAGQCIDPYITVSVKDLNGIDLNPVQDTPVATRKEDTYIHFSVDVEIQRHLEKLPKGAAIF   87 (152)
T ss_dssp             TTCCEEEEEEEEE-ECT--TGGGCEEEEEEEEEECTTSCBSSCCEECCCCCEECSSEEEEEEEEECSSCGGGSCTTCEEE
T ss_pred             CCCeEEEEEEEEE-EeC--CHHHccCCeEEEEEEcCCCCCccccccCCCcceecCCeEEEeeEEEeeCcHHHCCCCcEEE
Confidence            3445666666665 553  44556899999999876655   46667764  2223345676666665555554 35688


Q ss_pred             EEEEeCCCCCCC-eeeEEEEEccCCCCCcchhhhhhhcCC
Q psy12136        344 ITVWDKDYGKSN-DYLGCLELCCNSKGDRLRHWVDMMKYP  382 (399)
Q Consensus       344 i~V~d~~~~~~d-~~lG~~~i~l~~~~~~~~~w~~l~~~p  382 (399)
                      |++.++....+. ...+-+.+.++++..+. --.+|+..|
T Consensus        88 fElkH~k~kkkk~S~kCw~f~~~d~i~~g~-~~lElY~kP  126 (152)
T 2qzq_A           88 FEFKHYKPKKRFTSTKCFAFMEMDEIKPGP-IVIELYKKP  126 (152)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEGGGCCSEE-EEECCEESS
T ss_pred             EEEEEecccceeeeeeeEEEEEhhhcccCc-eeeehhcCc
Confidence            888887654322 23444555555543321 233445444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	399
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-32
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-22
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	3e-30
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	4e-19
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-27
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	9e-22
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	9e-27
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-22
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	7e-26
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-24
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	4e-24
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-19
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	1e-22
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	9e-21
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-21
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	6e-18
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	8e-19
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	8e-15
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-18
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-17
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	6e-17
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	1e-13
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-14
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	4e-12
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	9e-14
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	5e-12
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	4e-13
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	4e-10
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-11
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-11
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	5e-09
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-06
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	6e-09
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-06
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	9e-09
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	8e-08
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-08
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-06
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	6e-06

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  116 bits (291), Expect = 3e-32
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
           G++ ++LC+ +    L V ++K  +L   D +G SDP++K+ L     +  K KT VK  
Sbjct: 2   GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
           T N +FNE F  +     L + ++   V D + G  N+ +G L L   ++G    HW ++
Sbjct: 62  TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEI 121

Query: 379 MKYPDHKHEGIHNL 392
             +P  +    H L
Sbjct: 122 CDFPRRQIAKWHML 135

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.8 bits (222), Expect = 3e-22
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G + +++ Y STT +L V + +A+ L   D+ G SDP+ K+NL    K   + +T     
Sbjct: 2   GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 235
           T N  F+E   F  +    L   S+  LVLD ++   ++ +G                  
Sbjct: 62  TPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKE 120

Query: 236 LNLCKHYPVPR 246
           +       + +
Sbjct: 121 ICDFPRRQIAK 131

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  111 bits (277), Expect = 3e-30
 Identities = 70/134 (52%), Positives = 99/134 (73%), Gaps = 1/134 (0%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 318
           GKI ++L +ST++  LIV +I+C +L  MD+NG+SDPF+KL+LKPD   K K+KT +K K
Sbjct: 2   GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
           TLNP FNEEF  + K ++L+K++L I+VWD D GKSNDY+G  +L  ++KG+RL+HW + 
Sbjct: 62  TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYEC 121

Query: 379 MKYPDHKHEGIHNL 392
           +K  D K E  H L
Sbjct: 122 LKNKDKKIERWHQL 135

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.0 bits (199), Expect = 4e-19
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G I +++ Y +    L V + R   L AMD +G SDPF KL L P      + +T+   +
Sbjct: 2   GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 235
           T+NPEF+E+  +  +  +DL+ +SL I V D D    +D++G  +  ++     +     
Sbjct: 62  TLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE 120

Query: 236 LNLCKHYPVPR 246
               K   + R
Sbjct: 121 CLKNKDKKIER 131

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  103 bits (257), Expect = 5e-27
 Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY-KTGVKWK 318
           G I  +L +      L V +++  NL  MD  G SDP++K++L  +  + K  KT +K  
Sbjct: 12  GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
           TLNP +NE F+ E    ++ K  +V+TV D D    ND +G + +  NS G  LRHW DM
Sbjct: 72  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131

Query: 379 MKYPDHKHEGIHNL 392
           +  P       H L
Sbjct: 132 LANPRRPIAQWHTL 145

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.7 bits (219), Expect = 9e-22
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
            LG I  ++ Y  T   L V +  AK L+ MD+ G SDP+ K++L+   K   + +T   
Sbjct: 10  KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK 69

Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRD 233
             T+NP ++E  +F  V    +    + + VLD DK G +D +G+     N     +   
Sbjct: 70  KNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 128

Query: 234 LCLNLCKHYPVPR 246
             +      P+ +
Sbjct: 129 SDMLANPRRPIAQ 141

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 9e-27
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G + + + +D     L VT+  AK L + +     +P+ K+  +P     ++ RTKT  +
Sbjct: 1   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRL 226
           T+ P++++   +  V   +   + L I + D  +      +FLGE    L   
Sbjct: 61  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 113

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (224), Expect = 1e-22
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 5/123 (4%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK-YKTGVKWK 318
           G++ + L F      LIV ++   +L   +     +P++K+Y  PD   +   +T    K
Sbjct: 1   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60

Query: 319 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGK--SNDYLGCLELCCNS-KGDRLRH 374
           TL P +N+ F        E  ++ L IT+WD+   +   +++LG + +   +   D   H
Sbjct: 61  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120

Query: 375 WVD 377
           W  
Sbjct: 121 WYK 123

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 99.4 bits (247), Expect = 7e-26
 Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 3/127 (2%)

Query: 254 EECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKT 313
           +E  + GK+  +L +  +   L+V +I+   L  +D  G SDP++K++L PD  K+K++T
Sbjct: 15  KEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFET 73

Query: 314 GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDR 371
            V  KTLNP+FNE+F  +   +EL  +TLV+ V+D D    +D +G  ++  N+   G  
Sbjct: 74  KVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV 133

Query: 372 LRHWVDM 378
              W D+
Sbjct: 134 TEEWRDL 140

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.0 bits (238), Expect = 2e-24
 Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 4/130 (3%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
            + +  LG ++ ++ YD     L V + +A  L A+D+ GTSDP+ K+ L+P  K     
Sbjct: 14  PKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF-- 71

Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 228
            TK   +T+NP F+E+ TF  V  ++L  ++L + V D D++  HD +GE + P+N +  
Sbjct: 72  ETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 130

Query: 229 HISRDLCLNL 238
               +   +L
Sbjct: 131 GHVTEEWRDL 140

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.9 bits (235), Expect = 4e-24
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP-DLHKRKYKTGVKWK 318
           G++  +LC+      L V +IK +NL  MD  GFSDP++K  L       +K KT +K  
Sbjct: 7   GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 66

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDR-LRHWVD 377
           TLNP +NE    +     +    L I V D D    N+ +G   +   +       HW +
Sbjct: 67  TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAE 126

Query: 378 MMKYPDHKHEGIHNLS 393
           M+  P    E  H L 
Sbjct: 127 MLANPRKPVEHWHQLV 142

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.2 bits (202), Expect = 2e-19
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 173
            +LG +  ++ Y  T   L VT+ +A  L+AMD+ G SDP+ K +L+   +   + +T  
Sbjct: 4   ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSI 63

Query: 174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPH 229
              T+NP ++E L F  V+   +    L I V+D D  G ++ +G  R       PH
Sbjct: 64  KKNTLNPTYNEALVF-DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 119

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 90.5 bits (224), Expect = 1e-22
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP-DLHKRKYKTGVKWK 318
           G+I++      +   LIV +    NL+PMD NG SDP++KL L P    + K KT     
Sbjct: 4   GRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 61

Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 377
           +LNP +NE F  + K ++   + L + +WD D    ND++G L    +  +   +  W  
Sbjct: 62  SLNPEWNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 120

Query: 378 MMKYPDHKH 386
           ++   + ++
Sbjct: 121 LLSQEEGEY 129

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.1 bits (210), Expect = 9e-21
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 5/113 (4%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
           G I +    D     L V +  AK L  MD +G SDP+ KL L+P  K+  + +TKT   
Sbjct: 4   GRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 61

Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 228
           ++NPE++E   F  + E+D   + L + + D D    +DF+G   F ++ L+ 
Sbjct: 62  SLNPEWNETFRF-QLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQK 112

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.1 bits (215), Expect = 3e-21
 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 4/121 (3%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHR 168
           S   + LG++  ++ Y+    +  V +  A+GL AMD    TSDP+ K+ ++P  K  H+
Sbjct: 2   SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HK 59

Query: 169 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR 227
           ++T+   +T++P F E  TFY +  T +   +LH  +L  D++   D +GE   PL+ + 
Sbjct: 60  VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119

Query: 228 P 228
            
Sbjct: 120 L 120

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 6e-18
 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVK 316
             G +F +L ++ +++A +VN+ +   L  MD     SDP+IK+ + P+  K K KT V 
Sbjct: 7   GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVL 65

Query: 317 WKTLNPIFNEEF-AIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRL 372
            KTL+P F+E F       T++ +  L  T+   D    +D +G + +  +       ++
Sbjct: 66  RKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKM 125

Query: 373 RHWVDMMKYP 382
               +++  P
Sbjct: 126 LMNREIISGP 135

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.0 bits (196), Expect = 8e-19
 Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
           G+I   L +      L+V +++  +L   DSNGFSDP++K+YL PD  K+K++T V  KT
Sbjct: 5   GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 63

Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK----GDRLRHW 375
           LNPIFNE F     + EL+++ L  +V+D D    +D +G + L    +          W
Sbjct: 64  LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 123

Query: 376 VDMMK 380
            D+++
Sbjct: 124 RDILE 128

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.4 bits (166), Expect = 8e-15
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
            G I   + Y   +  L V + +A  L A D +G SDP+ K+ L+P  K     +TK   
Sbjct: 4   CGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF--QTKVHR 61

Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRD 233
           +T+NP F+E   F SV   +L+ + LH  V D D++  HD +G+              D
Sbjct: 62  KTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD 119

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.6 bits (195), Expect = 2e-18
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 12/135 (8%)

Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP---------LTKTSH 167
           G I+L + YD     L + + +A+ L   D +G SDPF K+ L+P              +
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64

Query: 168 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
           + RTK   +++NPE+++ + + S+S   L  ++L + V D D++  +DFLGE    L+  
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

Query: 227 RPHISRDLCLNLCKH 241
               +      L + 
Sbjct: 125 SHLDNTPRWYPLKEQ 139

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.1 bits (186), Expect = 3e-17
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 15/132 (11%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH----------KR 309
           G+I L + +      LI+++++  NL+P D+NG+SDPF+K+YL P             + 
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64

Query: 310 KYKTGVKWKTLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 366
           K +T    K+LNP +N+    +   + +L K+TL +TVWD D   SND+LG   ++L   
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

Query: 367 SKGDRLRHWVDM 378
           S  D    W  +
Sbjct: 125 SHLDNTPRWYPL 136

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 6e-17
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
            K+   L +  +K  L V  ++       + +G  D +++  +       + +T +K + 
Sbjct: 13  PKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69

Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 377
           L+  + E   +     EL   TL +T+   D    +   G   L L   S       W +
Sbjct: 70  LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129

Query: 378 MMK 380
           +  
Sbjct: 130 LKT 132

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 1e-13
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 6/135 (4%)

Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
           S +      +   + YD     L VT   A      +  G  D + + ++      S   
Sbjct: 6   SGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVAN-RTGSVEA 61

Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRP 228
           +T    R ++  + E L    ++E +L   +L + +   D++      GE R  L+    
Sbjct: 62  QTALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV 120

Query: 229 HISRDLCLNLCKHYP 243
            +       L    P
Sbjct: 121 PLGAAQWGELKTSGP 135

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 3e-14
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 132 LHVTLHRAKGLR---AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTF 188
             V + RA  +      D+  T DP+ +L +        R RT+     INP ++E    
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFIST--TPDSRKRTRHFNNDINPVWNE---T 59

Query: 189 YSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 238
           +           L I ++D +    + LG A F ++ ++    +++    
Sbjct: 60  FEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 109

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 275 LIVNLIKCTNLIP---MDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 331
             V +++ T +      D     DP+++L++       + +T      +NP++NE F   
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEFI 63

Query: 332 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHKHEGI 389
             +    +  L IT+ D +Y   ++ LG      +S   G++           +   E +
Sbjct: 64  --LDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIF----NQVTEMV 116

Query: 390 HNLSIKPLSS 399
             +S++  SS
Sbjct: 117 LEMSLEVASS 126

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 65.9 bits (160), Expect = 9e-14
 Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 22/138 (15%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V L  AKGL   D     DP+ +L      + S             PE++E   F +V
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS----NVAEGMGTTPEWNETFIF-TV 66

Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV 250
           SE       L   + D D     D +GEA  PL  +    S          Y V ++EE 
Sbjct: 67  SEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP-----TAYNVVKDEEY 118

Query: 251 WGEEECWQHGKIFLTLCF 268
                    G+I++ L F
Sbjct: 119 --------KGEIWVALSF 128

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.9 bits (147), Expect = 5e-12
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V L+    L   D     DP+++L  +    + +     +     P +NE F     +
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT--V 66

Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRLRHWVDMMKYPDHKHEGIHN 391
           +E +   L   ++DKD G  +D +G   +       +G       +++K  D +++G   
Sbjct: 67  SEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--DEEYKGEIW 123

Query: 392 LSIK 395
           +++ 
Sbjct: 124 VALS 127

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.6 bits (154), Expect = 4e-13
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 8/113 (7%)

Query: 271 KKRALIVNLIKCTNL--IPMDSNGFSDPFIKLYLK--PDLHKRKYKTGVKWKTLNPIFNE 326
           +   L V +I    L  +  + N   DP + + +         +    +     NP ++ 
Sbjct: 2   RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 61

Query: 327 EFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 377
           EF  E  +T      +   V D D    ND++G   +      +G R  H + 
Sbjct: 62  EFEFE--VTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLS 112

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.2 bits (132), Expect = 4e-10
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 132 LHVTLHRAKGLR--AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI-NPEFHEKLTF 188
           L V +   + L     + +   DP   + +  + + +   +T        NP +  +  F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 189 YSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISRDLCLNLCKHYPVP 245
                    L  +  +V D D    + F+G++  P N L+    R + L        P
Sbjct: 66  EVTVPD---LALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY-RHVHLLSKNGDQHP 119

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
           L V ++K  +L+  D +G SDPF  L L       + +T   +K LNP +N+ F   T  
Sbjct: 8   LQVKVLKAADLLAADFSGKSDPFCLLELG----NDRLQTHTVYKNLNPEWNKVF---TFP 60

Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 387
            +     L +TV+D+D  K  D+LG + +   S  D   +   +      +  
Sbjct: 61  IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAF 113

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 1e-11
 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V + +A  L A D  G SDPFC      L   + RL+T T  + +NPE+++  TF   
Sbjct: 8   LQVKVLKAADLLAADFSGKSDPFCL-----LELGNDRLQTHTVYKNLNPEWNKVFTF--- 59

Query: 192 SETDLSLQSLHILVLDDDK-YGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPR 246
                    L + V D+D     DFLG+   PL  +R        L         +
Sbjct: 60  -PIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK 114

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 10/110 (9%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETK 333
           +  N  +  +L     +  S PF  + +K  L   R      K  T+ P +   F     
Sbjct: 7   ISFNSYELGSLQAE--DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64

Query: 334 ITELSKQTLVITVWDKDYGKSNDY---LGCLELCCNSKGDRLRHWVDMMK 380
                 + + I +        ++    +  L   C     +   W+D+  
Sbjct: 65  E----GRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP 110

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 9/109 (8%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           +    +    L+A D    S PFC + +     T           T+ PE+         
Sbjct: 7   ISFNSYELGSLQAED--DASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDA--- 61

Query: 192 SETDLSLQSLHILVLDDDKY--GHDFLGEARFPLNRLRPHISRDLCLNL 238
                  + + I+++   +       +G +       + +   +  L+L
Sbjct: 62  --HIYEGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL 108

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 6e-09
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 11/105 (10%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L +T+  AK            P+ ++ +   +K     +T+ C  T +P++ + LT    
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSK-----KTEKCNNTNSPKWKQPLTVIVT 62

Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 235
             + L  +     V           LG A   +       +  L 
Sbjct: 63  PVSKLHFR-----VWSHQTLKSDVLLGTAALDIYETLKSNNMKLE 102

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 270 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 329
           T K  L + +I         +     P++++ +     K +        T +P + +   
Sbjct: 3   TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE----KCNNTNSPKWKQPLT 58

Query: 330 IETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
           +           L   VW     KS+  LG   L
Sbjct: 59  VIVTP----VSKLHFRVWSHQTLKSDVLLGTAAL 88

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 9e-09
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 14/110 (12%)

Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLK--PDLHKRKYKTG--VKWKTLNPIFNEEFAI 330
           L + +I    L           ++++ L   P   KR+Y+T       ++NP++ EE  +
Sbjct: 3   LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 331 ETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVDM 378
             KI      +L + V ++     N +LG   + +   + G         
Sbjct: 59  FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLCLHSE 104

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 8e-08
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL---TKTSHRLRTKTCLRTINPEFHEKLT 187
           +L +T+   + L    +      + ++ L  L    K  +R +      +INP + E+  
Sbjct: 2   TLSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEE-P 56

Query: 188 FYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVP 245
           F         L SL + V+++    + FLG    P+N L       LCL+   + P+ 
Sbjct: 57  FVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY-HHLCLHSESNMPLT 110

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 13/96 (13%)

Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
           L V + +AK   A +     + +       L   + +  T    R   P + +   F   
Sbjct: 4   LCVGVKKAKFDGAQE---KFNTYVT-----LKVQNVKSTTIAV-RGSQPSWEQDFMFEIN 54

Query: 192 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 227
                    L + V +        +G    PL  +R
Sbjct: 55  RLDL----GLTVEVWNKGLIWDTMVGTVWIPLRTIR 86

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 23/124 (18%)

Query: 132 LHVTLHRAKGLRAMDIH-----------GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINP 180
           L + +  A  L+                   DP+  LN       S   +T T  +T +P
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALN----VDDSRIGQTATKQKTNSP 63

Query: 181 EFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISR--DLCLN 237
            +H++      +   + L      V  D   G  DF+         L  + SR  +  ++
Sbjct: 64  AWHDEFVTDVCNGRKIELA-----VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118

Query: 238 LCKH 241
           L   
Sbjct: 119 LEPE 122

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 22/121 (18%)

Query: 275 LIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPI 323
           L + + +  +L P                  DP+I L +      +   T  K KT +P 
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQ---TATKQKTNSPA 64

Query: 324 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGC----LELCCNSKGDRLRHWVDMM 379
           +++EF  +        + + + V+       +D++       E    +       W+D+ 
Sbjct: 65  WHDEFVTDVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120

Query: 380 K 380
            
Sbjct: 121 P 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	399
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.97
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.97
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.96
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.95
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.92
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.91
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.9
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.9
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.9
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.9
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.9
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.89
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.89
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.89
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.89
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.89
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.89
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.88
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.88
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.88
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.86
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.86
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.84
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.84
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.79
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.79
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.78
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.78
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.77
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.75
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.74
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.72
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.7
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.68
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.68
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.67
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.62
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.56
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.51
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.46
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.3
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.24

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=2.3e-30  Score=213.28  Aligned_cols=136  Identities=29%  Similarity=0.502  Sum_probs=121.8

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      +|+|.++++|.|..++|.|+|++|+||+.++..+.+||||++++.++... .+++|++++++.||.|||+|.|.+...++
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~   80 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESL   80 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSS
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHh
Confidence            59999999999999999999999999999998999999999999765544 67899999999999999999999988888


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      ....|.|.|||++.++++++||++.|++.+.+.+.+||++|+.+|++++++||+|..
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~  137 (138)
T d1w15a_          81 EEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD  137 (138)
T ss_dssp             TTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CccEEEEEEEeCCCCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence            878899999999999999999999999999899999999999999999999999975

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1e-29  Score=209.25  Aligned_cols=136  Identities=51%  Similarity=0.879  Sum_probs=126.1

Q ss_pred             ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      +|+|.++++|.+..++|.|.|++|+||+..+..+.+||||++++.++... .+++|++++++.||.|||+|.|.+...++
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l   80 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL   80 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHc
Confidence            59999999999999999999999999999888899999999999875544 78899999999999999999999988888


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      ....|.|.|||++.++++++||++.|++++.+.+.+||++|+.+|++++++||+|+.
T Consensus        81 ~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~Wh~L~~  137 (137)
T d2cm5a1          81 AKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN  137 (137)
T ss_dssp             GGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC
T ss_pred             cccEEEEEeeeCCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCCCeeeEceeccC
Confidence            888999999999999999999999999998888899999999999999999999974

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=3.6e-29  Score=210.60  Aligned_cols=139  Identities=35%  Similarity=0.552  Sum_probs=130.1

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccC
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKIT  335 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~  335 (399)
                      ...|+|.++++|.+..++|.|.|++|+||+..+..+.+||||++++.+.+.+ .+++|++++++.||+|||+|.|.++..
T Consensus         9 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~   88 (157)
T d1uowa_           9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE   88 (157)
T ss_dssp             GCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             eeeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHH
Confidence            5799999999999999999999999999999888999999999999876544 667899999999999999999999888


Q ss_pred             cccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        336 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       336 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      ++....|.|+|||++.++++++||++.|++.+.+.+..||.+|+.+|++++++||+|+++
T Consensus        89 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_          89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             GGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             HcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            888889999999999999999999999999998889999999999999999999999874

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.3e-29  Score=209.11  Aligned_cols=139  Identities=30%  Similarity=0.489  Sum_probs=128.3

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccC
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKIT  335 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~  335 (399)
                      ...|+|+++++|.|..+.|.|+|++|+||+..+..+.+||||+|++.+.... .+++|++++++.||.|||+|.|.+...
T Consensus         4 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~   83 (145)
T d1dqva2           4 ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE   83 (145)
T ss_dssp             SCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred             CcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehh
Confidence            5799999999999999999999999999999888899999999999876555 678999999999999999999999887


Q ss_pred             cccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC-CcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        336 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       336 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~-~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      ++....|.|.|||++.++++++||++.|+++... .+..||++|+.+|++.+++||+|.++
T Consensus        84 ~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~p~~~i~~Wh~L~~~  144 (145)
T d1dqva2          84 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE  144 (145)
T ss_dssp             GGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             hcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCchhhHHHHHHHhCCCCeeeEeEECCCC
Confidence            8888889999999999999999999999998754 57899999999999999999999875

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.9e-24  Score=178.59  Aligned_cols=125  Identities=32%  Similarity=0.537  Sum_probs=112.7

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      ..+.+|+|++++.|+...++|.|+|++|+||++++..+.+||||+|++.+.+.  .+++|++++++.||+|||+|.| .+
T Consensus        16 ~~~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~--~~~kT~~~~~t~~P~wne~f~f-~i   92 (143)
T d1rsya_          16 EEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTF-KV   92 (143)
T ss_dssp             --CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCC--SCEECCCCTTCSSCEEEEEEEE-CC
T ss_pred             chhcceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCC--eeEEEEEeccccCcceeeeeEE-EE
Confidence            44678999999999999999999999999999999999999999999987643  6789999999999999999999 57


Q ss_pred             CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      +..++....|.|+|||++..++ ++||++.|+|.++..+.....|++|+
T Consensus        93 ~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_          93 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             CHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             EeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            7777777899999999999888 89999999999998888888898885

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.1e-24  Score=170.63  Aligned_cols=122  Identities=22%  Similarity=0.371  Sum_probs=105.0

Q ss_pred             eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136        117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL  196 (399)
Q Consensus       117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l  196 (399)
                      |+|++++.|++..++|.|+|++|+||++.+..+.+||||+|++.|+.....++||++++++.||+|||+|.|..++..++
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l   80 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF   80 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence            89999999999999999999999999999989999999999999876667789999999999999999999965777888


Q ss_pred             CCceEEEEEEEcCCCC--C-cceeeEEecCcccCCCcceeEEEeec
Q psy12136        197 SLQSLHILVLDDDKYG--H-DFLGEARFPLNRLRPHISRDLCLNLC  239 (399)
Q Consensus       197 ~~~~L~~~V~d~~~~~--~-~~lG~~~i~l~~l~~~~~~~~~~~L~  239 (399)
                      ....|.|+|||++..+  + ++||++.|+|+++..... ..|++|+
T Consensus        81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          81 RERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             GGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence            7889999999999763  3 699999999999876543 4577763

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-23  Score=171.24  Aligned_cols=127  Identities=28%  Similarity=0.562  Sum_probs=109.2

Q ss_pred             CCCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCC-CCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEec
Q psy12136        111 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY  189 (399)
Q Consensus       111 ~~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~-~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~  189 (399)
                      ..+...|+|++++.|++..++|.|+|++|+||+.++..+ .+||||+|++.+++.  .++||++++++.||+|||+|.|.
T Consensus         3 ~~~~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~   80 (138)
T d1ugka_           3 SGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLDPAFDETFTFY   80 (138)
T ss_dssp             CCCCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTC--SEEECCCCSSCSSCEEEEEEEEE
T ss_pred             CCCCCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCC--EeEeCeeEeCCCCCceeeEEEEe
Confidence            345678999999999999999999999999999988765 479999999988643  67899999999999999999996


Q ss_pred             eeCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCc-ceeEEEeec
Q psy12136        190 SVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI-SRDLCLNLC  239 (399)
Q Consensus       190 ~v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~-~~~~~~~L~  239 (399)
                      .++..++....|+|+|||++.+++ ++||++.|+|+++...+ ..++|..+.
T Consensus        81 ~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~  132 (138)
T d1ugka_          81 GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII  132 (138)
T ss_dssp             CCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred             eeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence            577777878899999999999887 99999999999986443 455665553

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.2e-23  Score=170.83  Aligned_cols=123  Identities=30%  Similarity=0.449  Sum_probs=105.9

Q ss_pred             cceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136        115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET  194 (399)
Q Consensus       115 ~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~  194 (399)
                      .+|+|+++++|++..++|.|+|++|+||+.++..+.+||||+|++++++.  .++||++++++.||+|||+|.| .++..
T Consensus         3 p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f-~v~~~   79 (130)
T d1dqva1           3 PCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK--KKFQTKVHRKTLNPIFNETFQF-SVPLA   79 (130)
T ss_dssp             SSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTT--SCEECCCCCSCSSCEEEEEEEE-ECCGG
T ss_pred             CcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCC--ceEeceeEcCCCCeeeeeEEEE-EEchH
Confidence            46999999999999999999999999999999999999999999987543  5789999999999999999999 68888


Q ss_pred             cCCCceEEEEEEEcCCCCC-cceeeEEecCcccC-CC-cceeEEEeecc
Q psy12136        195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR-PH-ISRDLCLNLCK  240 (399)
Q Consensus       195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~-~~-~~~~~~~~L~~  240 (399)
                      ++....|.|+|||++..++ ++||++.|++.... .. .....|++|.+
T Consensus        80 ~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          80 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             GGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             HcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            8878889999999999888 99999999865432 22 23445777753

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.1e-23  Score=170.95  Aligned_cols=108  Identities=39%  Similarity=0.638  Sum_probs=99.0

Q ss_pred             cceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcc
Q psy12136        258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITEL  337 (399)
Q Consensus       258 ~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l  337 (399)
                      ..|+|.++++|.+..++|.|.|++|+||+..+..|.+||||++++.++. ..+++|++++++.||+|||+|.|.+...++
T Consensus         3 p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~~P~wne~f~f~v~~~~~   81 (130)
T d1dqva1           3 PCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR-KKKFQTKVHRKTLNPIFNETFQFSVPLAEL   81 (130)
T ss_dssp             SSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTST-TSCEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCC-CceEeceeEcCCCCeeeeeEEEEEEchHHc
Confidence            5799999999999999999999999999999999999999999997643 367999999999999999999999987777


Q ss_pred             cccEEEEEEEeCCCCCCCeeeEEEEEccC
Q psy12136        338 SKQTLVITVWDKDYGKSNDYLGCLELCCN  366 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~  366 (399)
                      ....|.|+|||++.++++++||++.|++.
T Consensus        82 ~~~~L~v~V~d~~~~~~d~~iG~~~i~~~  110 (130)
T d1dqva1          82 AQRKLHFSVYDFDRFSRHDLIGQVVLDNL  110 (130)
T ss_dssp             SSCCCEEEEEECCSSSCCCEEEEEECCCT
T ss_pred             CCCeEEEEEEEcCCCCCCceEEEEEECch
Confidence            77889999999999999999999999854

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3.1e-23  Score=171.19  Aligned_cols=126  Identities=34%  Similarity=0.554  Sum_probs=109.9

Q ss_pred             cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccC
Q psy12136        256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT  335 (399)
Q Consensus       256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~  335 (399)
                      ....|+|++++.|.+..++|.|+|++|+||+.++..|.+||||++++.+.. ..+++|++++++.||.|||+|.|.+...
T Consensus        17 ~~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~-~~~~kT~~~~~t~~P~wne~f~f~i~~~   95 (143)
T d1rsya_          17 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYS   95 (143)
T ss_dssp             -CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC-CSCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred             hhcceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCC-CeeEEEEEeccccCcceeeeeEEEEEee
Confidence            357899999999999999999999999999999999999999999997643 3678999999999999999999998876


Q ss_pred             cccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136        336 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI  394 (399)
Q Consensus       336 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~  394 (399)
                      ++....|.|+|||++.++++++||++.|+|....            ++....+||.|+.
T Consensus        96 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~------------~~~~~~~W~~L~s  142 (143)
T d1rsya_          96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD------------FGHVTEEWRDLQS  142 (143)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCC------------CSSCEEEEEECBC
T ss_pred             ccCCceEEEEEEEcCCCCCCcEEEEEEEEchhcc------------CCCCCccEEeCCC
Confidence            7777899999999999989999999999998743            2344567777764

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.7e-23  Score=167.64  Aligned_cols=124  Identities=19%  Similarity=0.231  Sum_probs=110.1

Q ss_pred             CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136        112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV  191 (399)
Q Consensus       112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v  191 (399)
                      .....|+|++++.|+...++|.|+|++|++|+.   .+.+||||+|+|.++.. ...++|++++++.||+|||.|.| .+
T Consensus         8 s~~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~-~~~~kT~v~~~~~~P~wne~f~f-~v   82 (138)
T d1wfma_           8 SWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTG-SVEAQTALKKRQLHTTWEEGLVL-PL   82 (138)
T ss_dssp             CCSSCCEEEEEEEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTE-EEEEECCCCCCCSSEECSSCEEE-EC
T ss_pred             CCCcCCEEEEEEEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCC-ccceeeeEECCCCCceEeeeEEE-Ee
Confidence            345679999999999999999999999999953   46789999999987543 45788999999999999999999 58


Q ss_pred             CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      ...++....|+|+|||++..++ ++||++.|+|.++........|+.|..
T Consensus        83 ~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_          83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             CTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             eehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            8888888999999999999988 999999999999988878889999975

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.2e-23  Score=164.35  Aligned_cols=110  Identities=25%  Similarity=0.471  Sum_probs=95.3

Q ss_pred             eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEE-eccCcc
Q psy12136        260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKITEL  337 (399)
Q Consensus       260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~-v~~~~l  337 (399)
                      |+|+++++|.+..++|.|+|++|+||+..+..+.+||||++++.++... .+++|++++++.||.|||+|.|. +...++
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l   80 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF   80 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence            8999999999999999999999999999988999999999999876555 78999999999999999999996 676777


Q ss_pred             cccEEEEEEEeCCCC--CCCeeeEEEEEccCCCC
Q psy12136        338 SKQTLVITVWDKDYG--KSNDYLGCLELCCNSKG  369 (399)
Q Consensus       338 ~~~~l~i~V~d~~~~--~~d~~lG~~~i~l~~~~  369 (399)
                      ....|.|+|||++.+  .++++||++.|++++..
T Consensus        81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~  114 (125)
T d2bwqa1          81 RERMLEITLWDQARVREEESEFLGEILIELETAL  114 (125)
T ss_dssp             GGCEEEEEEEEC-------CEEEEEEEEEGGGCC
T ss_pred             CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcC
Confidence            778999999999965  44679999999987643

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=8.9e-23  Score=171.07  Aligned_cols=116  Identities=30%  Similarity=0.452  Sum_probs=104.7

Q ss_pred             CCCCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEec
Q psy12136        110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY  189 (399)
Q Consensus       110 ~~~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~  189 (399)
                      .+..+.+|+|+++++|++..++|.|.|++|+||+..+..+.+||||+|++.+++.....++|++++++.||+|||+|.| 
T Consensus         5 ~~~~~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F-   83 (157)
T d1uowa_           5 GGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF-   83 (157)
T ss_dssp             TTGGGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEE-
T ss_pred             CCCceeeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEE-
Confidence            3445678999999999999999999999999999999899999999999987655456678999999999999999999 


Q ss_pred             eeCcccCCCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136        190 SVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL  226 (399)
Q Consensus       190 ~v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l  226 (399)
                      .++..++....|.|+|||++.+++ ++||++.|++...
T Consensus        84 ~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_          84 EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             ECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             EecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccC
Confidence            688888888899999999999988 9999999999764

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.1e-22  Score=165.52  Aligned_cols=122  Identities=31%  Similarity=0.464  Sum_probs=105.3

Q ss_pred             CcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCc
Q psy12136        114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE  193 (399)
Q Consensus       114 ~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~  193 (399)
                      +.+|+|++++.|  ..++|.|+|++|+||+.++..|.+||||+|++.++.....+++|++++++.||+|||.|.| .+..
T Consensus         1 ~~rG~i~l~~~~--~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~v~~   77 (132)
T d1a25a_           1 ERRGRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF-QLKE   77 (132)
T ss_dssp             CTTCEEEEEEEE--SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEE-ECCS
T ss_pred             CcccEEEEEEEe--cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEE-EeEc
Confidence            357999999999  4789999999999999999999999999999988766678899999999999999999999 4554


Q ss_pred             ccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        194 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       194 ~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      .+. ...|.|+|||++..++ ++||++.|+|.++..+ ....|++|..
T Consensus        78 ~~~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~  123 (132)
T d1a25a_          78 SDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  123 (132)
T ss_dssp             GGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             ccc-CCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence            433 3579999999999988 9999999999998755 4567888753

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=2e-23  Score=172.22  Aligned_cols=124  Identities=30%  Similarity=0.458  Sum_probs=108.6

Q ss_pred             cceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC---------CceEecccccCCCCCeecce
Q psy12136        115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT---------SHRLRTKTCLRTINPEFHEK  185 (399)
Q Consensus       115 ~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---------~~~~rT~~~~~t~nP~wne~  185 (399)
                      ..|+|++++.|+  .++|.|+|++|+||++++..+.+||||+|++.++...         ..++||++++++.||+|||.
T Consensus         5 ~~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~   82 (142)
T d1rh8a_           5 ITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT   82 (142)
T ss_dssp             CCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred             cceEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEE
Confidence            579999999996  5899999999999999999999999999999764322         23468999999999999999


Q ss_pred             EEeceeCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        186 LTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       186 f~f~~v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      |.|..++..++....|.|+|||++..++ ++||++.|+|.++..+.....|++|++
T Consensus        83 f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~  138 (142)
T d1rh8a_          83 VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE  138 (142)
T ss_dssp             EEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred             EEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcC
Confidence            9996567777777899999999999988 999999999999988877788888864

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=2.5e-23  Score=171.57  Aligned_cols=128  Identities=34%  Similarity=0.498  Sum_probs=108.6

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC----------ceEeecceeCCCCceecc
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK----------RKYKTGVKWKTLNPIFNE  326 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~----------~~~kT~v~~~t~nP~wne  326 (399)
                      ...|+|++++.|.  .+.|.|.|++|+||+.++..|.+||||++++.+....          .+++|++++++.||.|||
T Consensus         4 p~~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne   81 (142)
T d1rh8a_           4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ   81 (142)
T ss_dssp             CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred             CcceEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEE
Confidence            4689999999996  4789999999999999999999999999999654322          346899999999999999


Q ss_pred             eEEEE-eccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCCC
Q psy12136        327 EFAIE-TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLS  398 (399)
Q Consensus       327 ~f~f~-v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~~  398 (399)
                      .|.|. +...++....|.|+|||++.++++++||++.|+|.+..            .+..+.+||+|+++..|
T Consensus        82 ~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~------------~~~~~~~W~~L~~~~~s  142 (142)
T d1rh8a_          82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS------------HLDNTPRWYPLKEQTES  142 (142)
T ss_dssp             EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCG------------GGTTCCEEEECBCCCCC
T ss_pred             EEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcC------------CCCCceEEEECcCcCCC
Confidence            99998 55456667899999999999999999999999998743            22346789999998765

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.3e-22  Score=166.44  Aligned_cols=111  Identities=28%  Similarity=0.399  Sum_probs=95.9

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      +|+|+++++|++..++|.|+|++|+||+.++..+.+||||+|++.++.....++||++++++.||.|||+|.| .++..+
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F-~v~~~~   79 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF-DIPCES   79 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEE-ECCSSS
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEE-EecHHH
Confidence            5999999999999999999999999999999889999999999987655456789999999999999999999 688888


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccC
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR  227 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~  227 (399)
                      +....|.|.|||++..++ ++||++.|++....
T Consensus        80 ~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~  112 (138)
T d1w15a_          80 LEEISVEFLVLDSERGSRNEVIGRLVLGATAEG  112 (138)
T ss_dssp             STTEEEEEEEEECCTTSCCEEEEEEEESTTCCS
T ss_pred             hCccEEEEEEEeCCCCCCCCEEEEEEEcchhCC
Confidence            888889999999999887 99999999998653

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=7.8e-23  Score=166.40  Aligned_cols=107  Identities=36%  Similarity=0.649  Sum_probs=95.1

Q ss_pred             cceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCc
Q psy12136        258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE  336 (399)
Q Consensus       258 ~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~  336 (399)
                      .+|+|++++.|.  .+.|.|+|++|+||+.++..|.+||||++++.+.... .+++|++++++.||+|||.|.|.+...+
T Consensus         2 ~rG~i~l~~~~~--~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   79 (132)
T d1a25a_           2 RRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD   79 (132)
T ss_dssp             TTCEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred             cccEEEEEEEec--CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc
Confidence            479999998885  5889999999999999999999999999999775544 7899999999999999999999987433


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNS  367 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~  367 (399)
                       ....|.|+|||++.++++++||++.|++.+
T Consensus        80 -~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~  109 (132)
T d1a25a_          80 -KDRRLSVEIWDWDLTSRNDFMGSLSFGISE  109 (132)
T ss_dssp             -GGCEEEEEEEECCSSSCCEEEEEEEEEHHH
T ss_pred             -cCCEEeEEEEecCCCCCCcEeEEEEEeHHH
Confidence             346799999999999999999999999876

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.5e-22  Score=164.51  Aligned_cols=111  Identities=32%  Similarity=0.489  Sum_probs=100.6

Q ss_pred             ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136        116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD  195 (399)
Q Consensus       116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~  195 (399)
                      +|+|+++++|++..++|.|.|++|+||+..+..+.+||||+|++.++.....++||++++++.||+|||+|.| .++..+
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f-~v~~~~   79 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY-DIKHSD   79 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEE-ECCGGG
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEE-EeEHHH
Confidence            5999999999999999999999999999999889999999999988766677899999999999999999999 688888


Q ss_pred             CCCceEEEEEEEcCCCCC-cceeeEEecCcccC
Q psy12136        196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR  227 (399)
Q Consensus       196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~  227 (399)
                      +....|.|.|||++..++ ++||++.+++..+.
T Consensus        80 l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          80 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG  112 (137)
T ss_dssp             GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred             ccccEEEEEeeeCCCCCCCCEEEEEEeCccccC
Confidence            888899999999999888 99999999998754

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-22  Score=163.46  Aligned_cols=127  Identities=18%  Similarity=0.161  Sum_probs=108.8

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCc
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE  336 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~  336 (399)
                      ...++|++++.|.+..++|.|+|++|++|+   ..+.+||||++++.+..+..+++|++++++.||+|||.|.|.+...+
T Consensus        10 ~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~   86 (138)
T d1wfma_          10 NQAPKLHYCLDYDCQKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE   86 (138)
T ss_dssp             SSCCEEEEEEEEETTTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred             CcCCEEEEEEEECCCCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehh
Confidence            567999999999999999999999999995   35678999999998754446789999999999999999999998888


Q ss_pred             ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCCC
Q psy12136        337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLS  398 (399)
Q Consensus       337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~~  398 (399)
                      +....|.|+|||++.++++++||++.|+|.+..            .......|+.|++...+
T Consensus        87 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~------------~~~~~~~W~~L~~~~~~  136 (138)
T d1wfma_          87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS------------VPLGAAQWGELKTSGPS  136 (138)
T ss_dssp             STTCEEEEEEEECCSSCTTSCSEEEEEESSSSS------------SCTTCCEEEECCCCSCC
T ss_pred             ccceEEEEEEeeecccccceeeeEEEEEhHHcc------------CCCCceEeEeCCCCCCC
Confidence            888899999999999999999999999998743            12235677777776554

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.6e-21  Score=157.53  Aligned_cols=111  Identities=30%  Similarity=0.462  Sum_probs=99.3

Q ss_pred             ccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCC-CCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEE-ecc
Q psy12136        257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG-FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-TKI  334 (399)
Q Consensus       257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g-~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~  334 (399)
                      ...|+|.+++.|.+....|.|+|++|+||+.++..+ .+||||++++.+.. ..+++|++++++.||.|||+|.|. +..
T Consensus         6 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~~~~~   84 (138)
T d1ugka_           6 SGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK-KHKVKTRVLRKTLDPAFDETFTFYGIPY   84 (138)
T ss_dssp             CCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTT-CSEEECCCCSSCSSCEEEEEEEEECCCS
T ss_pred             CCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCC-CEeEeCeeEeCCCCCceeeEEEEeeeCH
Confidence            568999999999999999999999999999887665 47999999998643 367899999999999999999996 666


Q ss_pred             CcccccEEEEEEEeCCCCCCCeeeEEEEEccCCC
Q psy12136        335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       335 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~  368 (399)
                      .++....|.|+|||++.++++++||++.|+|++.
T Consensus        85 ~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~  118 (138)
T d1ugka_          85 TQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI  118 (138)
T ss_dssp             TTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTC
T ss_pred             HHcccceEEEEEEECCCCCCCcEEEEEEEEcccc
Confidence            6777789999999999998999999999999874

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=3.4e-22  Score=165.31  Aligned_cols=123  Identities=31%  Similarity=0.523  Sum_probs=107.5

Q ss_pred             CcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCc
Q psy12136        114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE  193 (399)
Q Consensus       114 ~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~  193 (399)
                      ...|+|+++++|++..++|.|+|++|+||+..+..+.+||||+|++.++.....++||++++++.||+|||.|.| .++.
T Consensus         4 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F-~v~~   82 (145)
T d1dqva2           4 ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAP   82 (145)
T ss_dssp             SCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCC-CCCS
T ss_pred             CcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEE-EEeh
Confidence            468999999999999999999999999999999889999999999988666566789999999999999999999 5888


Q ss_pred             ccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136        194 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL  238 (399)
Q Consensus       194 ~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L  238 (399)
                      .++....|.|.|||++..++ ++||++.|++..+... ....|+.|
T Consensus        83 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l  127 (145)
T d1dqva2          83 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEM  127 (145)
T ss_dssp             GGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTS
T ss_pred             hhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCch-hhHHHHHH
Confidence            88888899999999999988 8999999999876432 23345444

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.6e-21  Score=154.48  Aligned_cols=119  Identities=34%  Similarity=0.548  Sum_probs=97.2

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD  208 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~  208 (399)
                      -+.|+|+|++|+||++++..|.+||||+|.+.     .++++|++++++.||+|||.|.| .+...   ...|.|+|||+
T Consensus         5 ~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f-~v~~~---~~~L~i~V~d~   75 (126)
T d2ep6a1           5 VGILQVKVLKAADLLAADFSGKSDPFCLLELG-----NDRLQTHTVYKNLNPEWNKVFTF-PIKDI---HDVLEVTVFDE   75 (126)
T ss_dssp             SEEEEEEEEEEESCCCSSSSSCCCEEEEEEET-----TEEEECCCCSSCSSCCCCEEEEE-EESCT---TCEEEEEEEEE
T ss_pred             cEEEEEEEEEeECCCCCCCCCCcCeEEEEEcC-----CeEEEEEeeCCceeEEEEEEEEE-EEecc---CceeEEEEEEc
Confidence            46899999999999999999999999999994     47899999999999999999999 46532   36899999999


Q ss_pred             CCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        209 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       209 ~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      +..++ ++||++.|+|.++..+..+  |+.|... .          ......|+|++++.|.
T Consensus        76 ~~~~~d~~lG~~~i~l~~l~~~~~~--~~~l~~~-~----------~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          76 DGDKPPDFLGKVAIPLLSIRDGQPN--CYVLKNK-D----------LEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             ETTEEEEECCBCEEEGGGCCSSCCE--ECCCBCS-C----------TTSCCSSEEEEEEEEE
T ss_pred             cCCcCcceEEEEEEEHHHCCCCCce--EEEcccc-C----------CCCceeEEEEEEEEEE
Confidence            99888 9999999999999876554  4444321 1          1124579999888764

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.4e-21  Score=153.63  Aligned_cols=121  Identities=20%  Similarity=0.306  Sum_probs=100.9

Q ss_pred             CCEEEEEEEEecCCCCC---CCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEE
Q psy12136        129 TCSLHVTLHRAKGLRAM---DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV  205 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V  205 (399)
                      .++|+|+|++|+||+..   +..|.+||||++.+.+..  .+++||++++++.||+|||+|.| .+..  .....|.|+|
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~f-~i~~--~~~~~L~v~V   76 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEF-ILDP--NQENVLEITL   76 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEE-EECT--TSCCEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcc--cceeEeeecCCCccceeceeeee-cccC--cccCcEEEEE
Confidence            46899999999999975   335789999999996543  36789999999999999999999 4542  3356899999


Q ss_pred             EEcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        206 LDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       206 ~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                      ||++..++++||++.++|.++..+.....|++|.+                ...|+|++++.+.+
T Consensus        77 ~d~d~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~----------------~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          77 MDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------------VTEMVLEMSLEVAS  125 (126)
T ss_dssp             EECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT----------------TEEEEEEEEEECCC
T ss_pred             EECCCCCCCeEEEEEEEHHHccCCCeEEEEEEccC----------------CCeEEEEEEEEEEe
Confidence            99998777999999999999998888889999954                34688888887765

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=1.3e-19  Score=147.83  Aligned_cols=120  Identities=28%  Similarity=0.412  Sum_probs=96.9

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEeccccc-CCCCCeecceEEeceeCcccCCCceEEEEEEE
Q psy12136        129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLD  207 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~-~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d  207 (399)
                      .+.|+|+|++|++|+..+..+.+||||++++.     ...++|++++ ++.||+|||+|.| .+...   ...|.|+|||
T Consensus         9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~-----~~~~~t~~~~~~~~nP~Wne~f~f-~v~~~---~~~L~v~V~d   79 (136)
T d1wfja_           9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR-----TQDQKSNVAEGMGTTPEWNETFIF-TVSEG---TTELKAKIFD   79 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEESS-----SCEEECCCCTTCCSSCEEEEEEEE-EEESS---CCEEEEEECC
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCCCccEEEEEe-----eeeEEEEEEecCCCcEEEeeEEEE-EEcCc---cceEEEEEEE
Confidence            35799999999999999999999999999984     4678888876 5899999999999 45542   3569999999


Q ss_pred             cCCCCC-cceeeEEecCcccCCC-cceeEEEeecccCCCCCccccccccccccceeEEEEEeeecc
Q psy12136        208 DDKYGH-DFLGEARFPLNRLRPH-ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK  271 (399)
Q Consensus       208 ~~~~~~-~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~  271 (399)
                      ++..++ ++||++.|+|.++... .....|+.+..              .....|+|++++.|.|.
T Consensus        80 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~--------------~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------------DEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------------TTEEEEEEEEEEEEEEC
T ss_pred             ecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC--------------CCccCEEEEEEEEEEeC
Confidence            999987 8999999999987543 33345665532              12467999999999875

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.2e-20  Score=146.68  Aligned_cols=102  Identities=30%  Similarity=0.421  Sum_probs=89.0

Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD  350 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~  350 (399)
                      ..|.|.|+|++|++|+.++..|.+||||++.+.    ..+++|++++++.||.|||.|.|.+..  . ...|.|+|||++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~----~~~~~T~~~~~t~nP~wne~f~f~v~~--~-~~~L~i~V~d~~   76 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELG----NDRLQTHTVYKNLNPEWNKVFTFPIKD--I-HDVLEVTVFDED   76 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET----TEEEECCCCSSCSSCCCCEEEEEEESC--T-TCEEEEEEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcC----CeEEEEEeeCCceeEEEEEEEEEEEec--c-CceeEEEEEEcc
Confidence            458999999999999999999999999999994    378999999999999999999999863  2 368999999999


Q ss_pred             CCCCCeeeEEEEEccCCCCCcchhhhhhh
Q psy12136        351 YGKSNDYLGCLELCCNSKGDRLRHWVDMM  379 (399)
Q Consensus       351 ~~~~d~~lG~~~i~l~~~~~~~~~w~~l~  379 (399)
                      .++++++||++.|++.....+..+|+.|.
T Consensus        77 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~  105 (126)
T d2ep6a1          77 GDKPPDFLGKVAIPLLSIRDGQPNCYVLK  105 (126)
T ss_dssp             TTEEEEECCBCEEEGGGCCSSCCEECCCB
T ss_pred             CCcCcceEEEEEEEHHHCCCCCceEEEcc
Confidence            98889999999999988765556666553

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.78  E-value=7.7e-19  Score=143.00  Aligned_cols=117  Identities=21%  Similarity=0.324  Sum_probs=95.9

Q ss_pred             CCEEEEEEEEecCCCCCC-----------CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCC
Q psy12136        129 TCSLHVTLHRAKGLRAMD-----------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS  197 (399)
Q Consensus       129 ~~~L~V~V~~a~~L~~~~-----------~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~  197 (399)
                      ++.|+|+|++|++|++.+           ..+..||||+|.+.    .....+|++++++.||.|||.|.| .++..   
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~----~~~~~~T~~~~~t~~P~Wne~f~f-~v~~~---   76 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD----DSRIGQTATKQKTNSPAWHDEFVT-DVCNG---   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET----TEEEEECCCCSSCSSCEEEEEEEE-EEEEE---
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC----CCcCcEeeEEcCCCCccCccEEEE-EEecC---
Confidence            468999999999998753           35678999999994    235578999999999999999999 46532   


Q ss_pred             CceEEEEEEEcCCCCC-cceeeEEecCcccCCCcc--eeEEEeecccCCCCCccccccccccccceeEEEEEeeeccc
Q psy12136        198 LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS--RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKK  272 (399)
Q Consensus       198 ~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~--~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~  272 (399)
                       ..|.|+|||++..++ ++||++.|+|.++.....  ...|++|+                  ..|+|++.+.+.+.+
T Consensus        77 -~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------------p~G~v~l~v~~~~~~  135 (136)
T d1gmia_          77 -RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE------------------PEGKVYVIIDLSGSS  135 (136)
T ss_dssp             -CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB------------------SSCEEEEEEEEEEEE
T ss_pred             -CceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC------------------CCcEEEEEEEEEeCC
Confidence             689999999999887 999999999999875543  45688874                  358999999887754

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=3.1e-18  Score=138.48  Aligned_cols=105  Identities=21%  Similarity=0.348  Sum_probs=82.9

Q ss_pred             CEEEEEEEEecCCCCC--CCCCCCCcEEEEEEecCCCCCceEecccccCC-CCCeecceEEeceeCcccCCCceEEEEEE
Q psy12136        130 CSLHVTLHRAKGLRAM--DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRT-INPEFHEKLTFYSVSETDLSLQSLHILVL  206 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~--~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t-~nP~wne~f~f~~v~~~~l~~~~L~~~V~  206 (399)
                      .+|.|+|++|++|+..  +..+.+||||+|++.+......+++|++++++ .||+|||+|.| .+...+.  ..|+|+||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f-~~~~~~~--~~L~~~V~   80 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF-EVTVPDL--ALVRFMVE   80 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEE-EESCGGG--CEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEE-EEEcchh--ceEEEEEE
Confidence            4799999999999754  45678999999999765555678899987655 79999999999 4554433  67999999


Q ss_pred             EcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136        207 DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       207 d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      |++..++ ++||++.|+|.++..+   ..|++|..
T Consensus        81 D~d~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~  112 (131)
T d1qasa2          81 DYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLS  112 (131)
T ss_dssp             ECCTTTCCEEEEEEEEEGGGBCCE---EEEEEEEC
T ss_pred             EecCCCCCcEEEEEEEEEeccCCC---CEEEECCC
Confidence            9999988 8999999999999754   34677753

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.5e-19  Score=141.87  Aligned_cols=119  Identities=19%  Similarity=0.214  Sum_probs=92.2

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136        130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD  209 (399)
Q Consensus       130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~  209 (399)
                      ++|.|+|++|++|+..+..+.+||||+|.+.     .+.++|++++++.||+|||.|.| .+...    ..|.|+|||++
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f-~~~~~----~~l~~~V~d~d   75 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVD-----GQSKKTEKCNNTNSPKWKQPLTV-IVTPV----SKLHFRVWSHQ   75 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEET-----TEEEECCCCSSCSSCEEEEEEEE-EECTT----CEEEEEEEECC
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEEC-----CeEEeeEEEEecccEEEcceEEE-EEEec----ceeEEEEEEcc
Confidence            5799999999999998888889999999994     47899999999999999999999 46543    57999999999


Q ss_pred             CCCC-cceeeEEecCcccCC---Cc--ceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        210 KYGH-DFLGEARFPLNRLRP---HI--SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       210 ~~~~-~~lG~~~i~l~~l~~---~~--~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      .+++ ++||++.++|.++..   +.  ..+.++.+...           .......|+|.+.+.+.
T Consensus        76 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-----------~~~~~~~G~L~v~l~~~  130 (133)
T d2nq3a1          76 TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----------KEPTETIGDLSICLDGL  130 (133)
T ss_dssp             SSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----------SCTTSEEEEEEEEEESE
T ss_pred             CCCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-----------CCCceEEEEEEEEEeeE
Confidence            9988 999999999998742   21  23344444321           11235679988887653

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3e-18  Score=137.64  Aligned_cols=93  Identities=20%  Similarity=0.354  Sum_probs=78.6

Q ss_pred             ceeEEEEEEeeecCCCCC---CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEe
Q psy12136        272 KRALIVNLIKCTNLIPMD---SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD  348 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~---~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  348 (399)
                      .++|+|+|++|+||+...   ..|.+||||++.+.+.. ..+++|+++.++.||.|||+|.|.+.  +.....|.|+|||
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~-~~~~~T~~~~~t~nP~wne~f~f~i~--~~~~~~L~v~V~d   78 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP-DSRKRTRHFNNDINPVWNETFEFILD--PNQENVLEITLMD   78 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST-TCCEECCCCTTCSSCEEEEEEEEEEC--TTSCCEEEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcc-cceeEeeecCCCccceeceeeeeccc--CcccCcEEEEEEE
Confidence            478999999999998643   35789999999996422 36789999999999999999999986  3445689999999


Q ss_pred             CCCCCCCeeeEEEEEccCCC
Q psy12136        349 KDYGKSNDYLGCLELCCNSK  368 (399)
Q Consensus       349 ~~~~~~d~~lG~~~i~l~~~  368 (399)
                      ++.. ++++||++.|+|+..
T Consensus        79 ~d~~-~d~~lG~~~i~L~~l   97 (126)
T d1rlwa_          79 ANYV-MDETLGTATFTVSSM   97 (126)
T ss_dssp             CCSS-CCEEEEEEEEEGGGS
T ss_pred             CCCC-CCCeEEEEEEEHHHc
Confidence            9876 589999999999874

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=6.7e-18  Score=136.49  Aligned_cols=110  Identities=21%  Similarity=0.277  Sum_probs=84.9

Q ss_pred             eeEEEEEEeeecCCCC--CCCCCCCcEEEEEEecCCCC-ceEeecceeCC-CCceecceEEEEeccCcccccEEEEEEEe
Q psy12136        273 RALIVNLIKCTNLIPM--DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKT-LNPIFNEEFAIETKITELSKQTLVITVWD  348 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~--~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~l~i~V~d  348 (399)
                      .+|.|.|++|++|+..  +.++.+||||+|++.+.... .+++|++++++ .||.|||+|.|.+...+  ...|.|+|||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~--~~~L~~~V~D   81 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD--LALVRFMVED   81 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG--GCEEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcch--hceEEEEEEE
Confidence            4799999999999754  45778999999999764433 78889987655 79999999999987443  3579999999


Q ss_pred             CCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCc
Q psy12136        349 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK  385 (399)
Q Consensus       349 ~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~  385 (399)
                      ++..++|++||++.|+|++...+. +|+.|+...++.
T Consensus        82 ~d~~~~d~~iG~~~i~l~~l~~g~-~~~~L~~~~g~~  117 (131)
T d1qasa2          82 YDSSSKNDFIGQSTIPWNSLKQGY-RHVHLLSKNGDQ  117 (131)
T ss_dssp             CCTTTCCEEEEEEEEEGGGBCCEE-EEEEEECTTSCE
T ss_pred             ecCCCCCcEEEEEEEEEeccCCCC-EEEECCCCCcCC
Confidence            999999999999999998866554 356665544433

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.72  E-value=3.9e-17  Score=132.72  Aligned_cols=107  Identities=18%  Similarity=0.283  Sum_probs=87.1

Q ss_pred             ceeEEEEEEeeecCCCCC-----------CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCccccc
Q psy12136        272 KRALIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQ  340 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~-----------~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~  340 (399)
                      .|.|.|+|++|++|++.+           ..+.+||||++.+..   ....+|+++.++.||.|||.|.|.+..    ..
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~---~~~~~T~~~~~t~~P~Wne~f~f~v~~----~~   77 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD---SRIGQTATKQKTNSPAWHDEFVTDVCN----GR   77 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT---EEEEECCCCSSCSSCEEEEEEEEEEEE----EC
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCC---CcCcEeeEEcCCCCccCccEEEEEEec----CC
Confidence            589999999999998753           466789999999942   256789999999999999999999963    36


Q ss_pred             EEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        341 TLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       341 ~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                      .|.|+|||++.+++|++||.+.|++.+          ++..+......|++|+|.
T Consensus        78 ~l~i~V~d~~~~~~d~~iG~~~i~l~~----------l~~~~~~~~~~w~~L~p~  122 (136)
T d1gmia_          78 KIELAVFHDAPIGYDDFVANCTIQFEE----------LLQNGSRHFEDWIDLEPE  122 (136)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHH----------HTSTTCSEEEEEEECBSS
T ss_pred             ceEEEEEEecCCCCceeEEEEEEEHHH----------hhhcCCcceeEEEeCCCC
Confidence            899999999999999999999999754          334444455677777764

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=8e-17  Score=128.89  Aligned_cols=124  Identities=18%  Similarity=0.230  Sum_probs=88.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK  210 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~  210 (399)
                      .|.|+|++|++|.+.+   ..||||+|.+.     ..+.+|++++ +.||+|||.|.| .+...   ...|.|+|||++.
T Consensus         3 ~L~V~v~~a~~l~~~~---~~dpYv~l~~~-----~~k~~T~~~k-~~nP~Wne~f~f-~v~~~---~~~L~v~V~d~~~   69 (128)
T d2cjta1           3 LLCVGVKKAKFDGAQE---KFNTYVTLKVQ-----NVKSTTIAVR-GSQPSWEQDFMF-EINRL---DLGLTVEVWNKGL   69 (128)
T ss_dssp             EEEEEEEEEECSSCGG---GCEEEEEEEET-----TEEEECCCEE-SSSCEEEEEEEE-EECCC---SSEEEEEEEECCS
T ss_pred             EEEEEEEEEECCCCCC---CcCeEEEEEeC-----CEEEEEEEec-CCCCeEEEEEEE-eeccc---cceEEEEEEeCCC
Confidence            6999999999999876   47999999994     5788898886 569999999999 45433   3679999999998


Q ss_pred             CCCcceeeEEecCcccCCC--cceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136        211 YGHDFLGEARFPLNRLRPH--ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS  269 (399)
Q Consensus       211 ~~~~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~  269 (399)
                      .++++||++.|+|+++..+  .....|+.|...... ......+. .......|++.++|+
T Consensus        70 ~~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~-~~gei~gt-~~~~~~~~ll~~~~~  128 (128)
T d2cjta1          70 IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIM-ADSEICGT-KDPTFHRILLDAHFE  128 (128)
T ss_dssp             SCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-----------CC-SCCCCCEEEEEEEEC
T ss_pred             cCCcceEEEEEEehhhccCCCCCCCeeEECCccccC-CCCEEEee-ecCCCcEEEEEEEcC
Confidence            7669999999999998643  334568888542111 11111111 123456777777763

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.5e-16  Score=127.22  Aligned_cols=85  Identities=18%  Similarity=0.209  Sum_probs=72.2

Q ss_pred             ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136        272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY  351 (399)
Q Consensus       272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~  351 (399)
                      ++.|+|+|.+|++|.+.+   ..||||++.+.    ..+.+|.++++ .||.|||.|.|.+..  . ...|.|+|||++.
T Consensus         1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~----~~k~~T~~~k~-~nP~Wne~f~f~v~~--~-~~~L~v~V~d~~~   69 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQ----NVKSTTIAVRG-SQPSWEQDFMFEINR--L-DLGLTVEVWNKGL   69 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG---GCEEEEEEEET----TEEEECCCEES-SSCEEEEEEEEEECC--C-SSEEEEEEEECCS
T ss_pred             CeEEEEEEEEEECCCCCC---CcCeEEEEEeC----CEEEEEEEecC-CCCeEEEEEEEeecc--c-cceEEEEEEeCCC
Confidence            367999999999998754   57999999994    37888888875 599999999999963  3 4689999999987


Q ss_pred             CCCCeeeEEEEEccCCC
Q psy12136        352 GKSNDYLGCLELCCNSK  368 (399)
Q Consensus       352 ~~~d~~lG~~~i~l~~~  368 (399)
                      . +|++||++.|+|++.
T Consensus        70 ~-~d~~lG~~~I~L~~l   85 (128)
T d2cjta1          70 I-WDTMVGTVWIPLRTI   85 (128)
T ss_dssp             S-CEEEEEEEEEEGGGS
T ss_pred             c-CCcceEEEEEEehhh
Confidence            6 589999999999863

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=3.8e-17  Score=132.92  Aligned_cols=103  Identities=22%  Similarity=0.289  Sum_probs=84.9

Q ss_pred             cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeeccee-CCCCceecceEEEEeccCcccccEEEEEEEeC
Q psy12136        271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDK  349 (399)
Q Consensus       271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  349 (399)
                      ..|.|.|+|++|++|+..+..|.+||||++++.+    .+++|++++ ++.||.|||+|.|.+...   ...|.|+|||+
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~----~~~~t~~~~~~~~nP~Wne~f~f~v~~~---~~~L~v~V~d~   80 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT----QDQKSNVAEGMGTTPEWNETFIFTVSEG---TTELKAKIFDK   80 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS----CEEECCCCTTCCSSCEEEEEEEEEEESS---CCEEEEEECCS
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee----eeEEEEEEecCCCcEEEeeEEEEEEcCc---cceEEEEEEEe
Confidence            3478999999999999999899999999999843    567788776 589999999999999732   35699999999


Q ss_pred             CCCCCCeeeEEEEEccCCC---CCcchhhhhhhc
Q psy12136        350 DYGKSNDYLGCLELCCNSK---GDRLRHWVDMMK  380 (399)
Q Consensus       350 ~~~~~d~~lG~~~i~l~~~---~~~~~~w~~l~~  380 (399)
                      +.+++|++||++.|+|.+.   +....+|+.+..
T Consensus        81 d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~  114 (136)
T d1wfja_          81 DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK  114 (136)
T ss_dssp             SSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE
T ss_pred             cCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC
Confidence            9998999999999998752   233455666654

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.7e-16  Score=128.28  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=77.2

Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      .+|.|+|++|++++..+..+.+||||++.++    ..+++|++++++.||.|||.|.|.+..    ...|.|+|||++.+
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~----~~~~kT~v~~~t~nP~wne~f~f~~~~----~~~l~~~V~d~d~~   77 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVD----GQSKKTEKCNNTNSPKWKQPLTVIVTP----VSKLHFRVWSHQTL   77 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEET----TEEEECCCCSSCSSCEEEEEEEEEECT----TCEEEEEEEECCSS
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEEC----CeEEeeEEEEecccEEEcceEEEEEEe----cceeEEEEEEccCC
Confidence            6899999999999988888889999999994    377999999999999999999999863    35899999999999


Q ss_pred             CCCeeeEEEEEccCC
Q psy12136        353 KSNDYLGCLELCCNS  367 (399)
Q Consensus       353 ~~d~~lG~~~i~l~~  367 (399)
                      ++|++||++.|+|..
T Consensus        78 ~~d~~iG~~~i~L~~   92 (133)
T d2nq3a1          78 KSDVLLGTAALDIYE   92 (133)
T ss_dssp             SCCEEEEEEEEEHHH
T ss_pred             CCCceEEEEEEEHHH
Confidence            999999999999864

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.1e-15  Score=121.50  Aligned_cols=111  Identities=15%  Similarity=0.250  Sum_probs=83.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136        132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY  211 (399)
Q Consensus       132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~  211 (399)
                      +.|.++.+..+  ....+.+||||+|++.+.......++|+++++|+||+|||+|.| .+..    ...|.|.|||++  
T Consensus         7 ~~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~-~v~~----~~~l~i~V~d~d--   77 (123)
T d1bdya_           7 ISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDA-HIYE----GRVIQIVLMRAA--   77 (123)
T ss_dssp             EEEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEE-ECCT----TCEEEEEEEEET--
T ss_pred             EEEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEE-EEcc----ccEEEEEEEEcc--
Confidence            34444444443  44568899999999976433334567889999999999999999 4543    367999999986  


Q ss_pred             CCcceeeEEecCcccC-----CCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136        212 GHDFLGEARFPLNRLR-----PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST  270 (399)
Q Consensus       212 ~~~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~  270 (399)
                       ++++|.+.+++..+.     .+.....|+.|+                  ..|+|++.+.|..
T Consensus        78 -d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~------------------~~Gkl~l~v~~f~  122 (123)
T d1bdya_          78 -EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ------------------PQAKVLMCVQYFL  122 (123)
T ss_dssp             -TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB------------------SSCEEEEEEEEEE
T ss_pred             -ccccCccEEehhheeeccccCCCcccEEEeCC------------------CCEEEEEEEEEec
Confidence             489999999998874     345667888884                  4799999998864

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.2e-14  Score=112.66  Aligned_cols=98  Identities=27%  Similarity=0.433  Sum_probs=71.7

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEEecC-CCCCceEeccc--ccCCCCCeecce-EEeceeCcccCCCceEEEEEE
Q psy12136        131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL-TKTSHRLRTKT--CLRTINPEFHEK-LTFYSVSETDLSLQSLHILVL  206 (399)
Q Consensus       131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~rT~~--~~~t~nP~wne~-f~f~~v~~~~l~~~~L~~~V~  206 (399)
                      +|.|+|++|++|+...    +||||+|++.+. .....+.+|++  ..++.||+|||. |.|..+...++  ..|+|.||
T Consensus         2 tl~V~Visaq~L~~~~----~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l--~~L~f~V~   75 (122)
T d2zkmx2           2 TLSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAVM   75 (122)
T ss_dssp             EEEEEEEEEESCCSSC----CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEEE
T ss_pred             EEEEEEEEeeCCCCCC----CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcc--cEEEEEEE
Confidence            6899999999998764    899999999641 11123344443  467899999976 44423444444  68999999


Q ss_pred             EcCCCCCcceeeEEecCcccCCCcceeEEEeecc
Q psy12136        207 DDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCK  240 (399)
Q Consensus       207 d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~  240 (399)
                      |++   +++||++.+||+.+..+   ..+++|..
T Consensus        76 D~d---~~~lG~~~ipl~~l~~G---yR~vpL~~  103 (122)
T d2zkmx2          76 EEG---NKFLGHRIIPINALNSG---YHHLCLHS  103 (122)
T ss_dssp             ETT---TEEEEEEEEEGGGBCCE---EEEEEEEC
T ss_pred             CCC---CCEEEEEEEEcccCcCC---ceEEEccC
Confidence            975   49999999999999755   34567754

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=4.5e-14  Score=112.03  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=76.8

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG  352 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~  352 (399)
                      ++.|.++.+..++  ...+.+||||+|++.+.... .+++|.++++|+||+|||+|.|.+..    ...|.|.|||++  
T Consensus         6 ~~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~----~~~l~i~V~d~d--   77 (123)
T d1bdya_           6 RISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMRAA--   77 (123)
T ss_dssp             EEEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT----TCEEEEEEEEET--
T ss_pred             EEEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc----ccEEEEEEEEcc--
Confidence            3445555555544  45788999999999764333 56789999999999999999999862    368999999975  


Q ss_pred             CCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136        353 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK  395 (399)
Q Consensus       353 ~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~  395 (399)
                        ++++|.+.|++.....       -....+.....|+.|++.
T Consensus        78 --d~~~g~~~i~l~~l~~-------~~~~~~~~~~~W~~L~~~  111 (123)
T d1bdya_          78 --EDPMSEVTVGVSVLAE-------RCKKNNGKAEFWLDLQPQ  111 (123)
T ss_dssp             --TEEEEEEEEEHHHHHH-------HHHTTTTEEEEEEECBSS
T ss_pred             --ccccCccEEehhheee-------ccccCCCcccEEEeCCCC
Confidence              7899999999765221       111234466788888764

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-13  Score=108.28  Aligned_cols=91  Identities=24%  Similarity=0.381  Sum_probs=66.8

Q ss_pred             eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCC--CCceEeecc--eeCCCCceecce-EEEE-eccCcccccEEEEEEE
Q psy12136        274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HKRKYKTGV--KWKTLNPIFNEE-FAIE-TKITELSKQTLVITVW  347 (399)
Q Consensus       274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~--~~~~~kT~v--~~~t~nP~wne~-f~f~-v~~~~l~~~~l~i~V~  347 (399)
                      .|.|+|+.|++|+..    ..||||+|++.+..  ...+++|++  ..++.||+|||. |.|. +...+  ...|.|.||
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~--l~~L~f~V~   75 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE--LASLRVAVM   75 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG--GCEEEEEEE
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCc--ccEEEEEEE
Confidence            589999999999754    48999999997521  223333433  567899999976 4443 44333  358999999


Q ss_pred             eCCCCCCCeeeEEEEEccCCCCCcchh
Q psy12136        348 DKDYGKSNDYLGCLELCCNSKGDRLRH  374 (399)
Q Consensus       348 d~~~~~~d~~lG~~~i~l~~~~~~~~~  374 (399)
                      |++    +++||++.|+++....+++|
T Consensus        76 D~d----~~~lG~~~ipl~~l~~GyR~   98 (122)
T d2zkmx2          76 EEG----NKFLGHRIIPINALNSGYHH   98 (122)
T ss_dssp             ETT----TEEEEEEEEEGGGBCCEEEE
T ss_pred             CCC----CCEEEEEEEEcccCcCCceE
Confidence            975    78999999999987766544