Psyllid ID: psy12164

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50-------
Protein Sequence
MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNISSSSTGSRLNSSII
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MTIQQKYNTKAAALYRDKIATLargeewdqskssansyvssnisssstgsrlnssii
Flexible Loop (DISEMBL)
mtiqqkyntkaaalyRDKIATLargeewdqskssansyvssnisssstgsrlnssii
Low Complexity Region (SEG)
MTIQQKYNTKAAALYRDKIATLARGEEWDQskssansyvssnisssstgsrlnssII
Disordered region (IsUnstruct)
************ALYRDKIAT************************************
Disordered Region (DISOPRED)
*******NTKAAALYRDKIATLARG********************************
Disordered Region (DISEMBL)
MTIQQKYNTKAAALYRDKIATLAR*********************************
Disordered Region (DISPRO)
*TIQQKYNTKAAALYRDKIATLARGE*******************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNISSSSTGSRLNSSII
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	57	2.2.26 [Sep-21-2011]
Q9EPJ9	414	ADP-ribosylation factor G	yes	N/A	0.684	0.094	0.487	6e-05
Q62848	415	ADP-ribosylation factor G	yes	N/A	0.684	0.093	0.487	6e-05
Q8N6T3	406	ADP-ribosylation factor G	yes	N/A	0.701	0.098	0.45	7e-05

>sp|Q9EPJ9|ARFG1_MOUSE ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYV 39
            ++Q KY+++AAAL+RDK+ATLA G+EW    S A ++ 
Sbjct: 97  WSLQDKYSSRAAALFRDKVATLAEGKEWSLESSPAQNWT 135

GTPase-activating protein (GAP) for the ADP ribosylation factor 1 (ARF1). Involved in membrane trafficking and /or vesicle transport. Promotes hydrolysis of the ARF1-bound GTP and thus, is required for the dissociation of coat proteins from Golgi-derived membranes and vesicles, a prerequisite for vesicle's fusion with target compartment. Probably regulates ARF1-mediated transport via its interaction with the KDELR proteins and TMED2. Overexpression induces the redistribution of the entire Golgi complex to the endoplasmic reticulum, as when ARF1 is deactivated. Its activity is stimulated by phosphoinosides and inhibited by phosphatidylcholine.
Mus musculus (taxid: 10090)

>sp|Q62848|ARFG1_RAT ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYV 39
            ++Q KY+++AAAL+RDK+ATLA G+EW    S A ++ 
Sbjct: 97  WSLQDKYSSRAAALFRDKVATLAEGKEWSLESSPAQNWT 135

GTPase-activating protein (GAP) for the ADP ribosylation factor 1 (ARF1). Involved in membrane trafficking and /or vesicle transport. Promotes hydrolysis of the ARF1-bound GTP and thus, is required for the dissociation of coat proteins from Golgi-derived membranes and vesicles, a prerequisite for vesicle's fusion with target compartment. Probably regulates ARF1-mediated transport via its interaction with the KDELR proteins and TMED2. Overexpression induces the redistribution of the entire Golgi complex to the endoplasmic reticulum, as when ARF1 is deactivated. Its activity is stimulated by phosphoinosides and inhibited by phosphatidylcholine.

Rattus norvegicus (taxid: 10116)

>sp|Q8N6T3|ARFG1_HUMAN ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 2   TIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSS 41
           ++Q+KYN++AAAL+RDK+  LA G EW    S A ++   
Sbjct: 98  SLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPP 137

GTPase-activating protein (GAP) for the ADP ribosylation factor 1 (ARF1). Involved in membrane trafficking and /or vesicle transport. Promotes hydrolysis of the ARF1-bound GTP and thus, is required for the dissociation of coat proteins from Golgi-derived membranes and vesicles, a prerequisite for vesicle's fusion with target compartment. Probably regulates ARF1-mediated transport via its interaction with the KDELR proteins and TMED2. Overexpression induces the redistribution of the entire Golgi complex to the endoplasmic reticulum, as when ARF1 is deactivated. Its activity is stimulated by phosphoinosides and inhibited by phosphatidylcholine.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	57
270003202	433	hypothetical protein TcasGA2_TC002406 [T	0.754	0.099	0.674	4e-08
91080075	431	PREDICTED: similar to arf gtpase-activat	0.754	0.099	0.674	4e-08
308499775	420	hypothetical protein CRE_29695 [Caenorha	0.894	0.121	0.566	4e-08
350401771	400	PREDICTED: ADP-ribosylation factor GTPas	0.771	0.11	0.681	5e-08
340718272	400	PREDICTED: ADP-ribosylation factor GTPas	0.771	0.11	0.659	6e-08
242023977	449	ADP-ribosylation factor GTPase-activatin	0.684	0.086	0.717	9e-08
443688204	468	hypothetical protein CAPTEDRAFT_222395 [	0.754	0.091	0.651	1e-07
328781188	365	PREDICTED: ADP-ribosylation factor GTPas	0.719	0.112	0.707	1e-07
328781190	395	PREDICTED: ADP-ribosylation factor GTPas	0.719	0.103	0.707	1e-07
380028105	396	PREDICTED: LOW QUALITY PROTEIN: ADP-ribo	0.719	0.103	0.707	1e-07

>gi|270003202|gb|EEZ99649.1| hypothetical protein TcasGA2_TC002406 [Tribolium castaneum]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 34/43 (79%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNI 43
           M+IQQKYNTKAAALYRDKIA LA+G+ WD+  S A +Y  S I
Sbjct: 97  MSIQQKYNTKAAALYRDKIAALAQGKAWDEKSSPAQNYTGSLI 139

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080075|ref|XP_967735.1| PREDICTED: similar to arf gtpase-activating protein [Tribolium castaneum]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 34/43 (79%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNI 43
           M+IQQKYNTKAAALYRDKIA LA+G+ WD+  S A +Y  S I
Sbjct: 97  MSIQQKYNTKAAALYRDKIAALAQGKAWDEKSSPAQNYTGSLI 139

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308499775|ref|XP_003112073.1| hypothetical protein CRE_29695 [Caenorhabditis remanei] gi|308268554|gb|EFP12507.1| hypothetical protein CRE_29695 [Caenorhabditis remanei]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 38/53 (71%), Gaps = 2/53 (3%)

Query: 2   TIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNISSSSTGSRLNS 54
           TIQ+KYN+KAAAL+RDK+A+ A G EW QS S AN+YV   +     G+R NS
Sbjct: 98  TIQEKYNSKAAALFRDKVASEAEGREWSQSTSPANNYVPPTL--GGMGARTNS 148

Source: Caenorhabditis remanei

Species: Caenorhabditis remanei

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|350401771|ref|XP_003486257.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 1-like [Bombus impatiens]

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 35/44 (79%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNIS 44
           M+I QKYNTKAAALYRDKIATLARGE W+ + S+A  + SS  S
Sbjct: 97  MSITQKYNTKAAALYRDKIATLARGESWNPTTSTAKDFQSSMCS 140

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718272|ref|XP_003397595.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 1-like [Bombus terrestris]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNIS 44
           M+I QKYNTKAAALYRDK+ATLARGE W+ + S+A  + SS  S
Sbjct: 97  MSITQKYNTKAAALYRDKVATLARGESWNPTTSTAKDFQSSMCS 140

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023977|ref|XP_002432407.1| ADP-ribosylation factor GTPase-activating protein, putative [Pediculus humanus corporis] gi|212517830|gb|EEB19669.1| ADP-ribosylation factor GTPase-activating protein, putative [Pediculus humanus corporis]

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 33/39 (84%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYV 39
           M IQQKYNTKAAALYRDKI+ LA+G+ WD S SSA +Y+
Sbjct: 97  MPIQQKYNTKAAALYRDKISALAQGKSWDISSSSAQNYI 135

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443688204|gb|ELT90952.1| hypothetical protein CAPTEDRAFT_222395 [Capitella teleta]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNI 43
           M+IQQKYNT+AAALYRDKI+T A G  W  +KS A +YVSS++
Sbjct: 97  MSIQQKYNTRAAALYRDKISTEAEGRPWSAAKSPARNYVSSSV 139

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|328781188|ref|XP_003249937.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 1-like isoform 1 [Apis mellifera]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 33/41 (80%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSS 41
           M+I QKYNTKAAALYRDKIATLARGE W  + S+A  + SS
Sbjct: 97  MSITQKYNTKAAALYRDKIATLARGENWSPTTSTAKDFQSS 137

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781190|ref|XP_394952.4| PREDICTED: ADP-ribosylation factor GTPase-activating protein 1-like isoform 2 [Apis mellifera]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 33/41 (80%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSS 41
           M+I QKYNTKAAALYRDKIATLARGE W  + S+A  + SS
Sbjct: 97  MSITQKYNTKAAALYRDKIATLARGENWSPTTSTAKDFQSS 137

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028105|ref|XP_003697751.1| PREDICTED: LOW QUALITY PROTEIN: ADP-ribosylation factor GTPase-activating protein 1-like [Apis florea]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 33/41 (80%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSS 41
           M+I QKYNTKAAALYRDKIATLARGE W  + S+A  + SS
Sbjct: 97  MSITQKYNTKAAALYRDKIATLARGENWSPTTSTAKDFQSS 137

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	57
FB|FBgn0020655	468	ArfGAP1 "ADP-ribosylation fact	0.473	0.057	0.777	5.8e-06
UNIPROTKB|E2RHR0	417	ARFGAP1 "Uncharacterized prote	0.473	0.064	0.703	1.7e-05
ZFIN|ZDB-GENE-041114-130	394	arfgap1 "ADP-ribosylation fact	0.473	0.068	0.666	2.5e-05
WB|WBGene00010500	423	K02B12.7 [Caenorhabditis elega	0.508	0.068	0.655	3.6e-05
UNIPROTKB|F1N8K3	419	ARFGAP1 "Uncharacterized prote	0.473	0.064	0.629	5.9e-05
UNIPROTKB|F1LU38	400	Arfgap1 "ADP-ribosylation fact	0.473	0.067	0.629	9e-05
UNIPROTKB|E5RHC5	261	ARFGAP1 "ADP-ribosylation fact	0.473	0.103	0.592	9e-05
UNIPROTKB|Q3S4A5	403	Arfgap1 "ADP-ribosylation fact	0.473	0.066	0.629	9.1e-05
MGI|MGI:2183559	414	Arfgap1 "ADP-ribosylation fact	0.473	0.065	0.629	9.5e-05
RGD|708452	415	Arfgap1 "ADP-ribosylation fact	0.473	0.065	0.629	9.5e-05

FB|FBgn0020655 ArfGAP1 "ADP-ribosylation factor GTPase activating protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 114 (45.2 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 21/27 (77%), Positives = 25/27 (92%)

Query:     3 IQQKYNTKAAALYRDKIATLARGEEWD 29
             I Q+YN+KAAALYRDKIATLA+G+ WD
Sbjct:    99 ITQRYNSKAAALYRDKIATLAQGKSWD 125

GO:0008060 "ARF GTPase activator activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005525 "GTP binding" evidence=NAS

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IGI

GO:0005795 "Golgi stack" evidence=IGI

UNIPROTKB|E2RHR0 ARFGAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 109 (43.4 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 19/27 (70%), Positives = 24/27 (88%)

Query:     2 TIQQKYNTKAAALYRDKIATLARGEEW 28
             ++Q KYN+KAAAL+RDK+ATLA G EW
Sbjct:    98 SLQDKYNSKAAALFRDKVATLAEGREW 124

GO:0045202 "synapse" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

ZFIN|ZDB-GENE-041114-130 arfgap1 "ADP-ribosylation factor GTPase activating protein 1" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 18/27 (66%), Positives = 26/27 (96%)

Query:     2 TIQQKYNTKAAALYRDKIATLARGEEW 28
             ++Q+KYN++AAAL+RDK+ATLA G+EW
Sbjct:    98 SLQEKYNSRAAALFRDKVATLADGKEW 124

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00010500 K02B12.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query:     2 TIQQKYNTKAAALYRDKIATLARGEEWDQ 30
             TIQ+KYN++AAAL+RDK+A  A G EW Q
Sbjct:    98 TIQEKYNSRAAALFRDKVACEAEGREWSQ 126

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F1N8K3 ARFGAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 104 (41.7 bits), Expect = 5.9e-05, P = 5.9e-05
 Identities = 17/27 (62%), Positives = 26/27 (96%)

Query:     2 TIQQKYNTKAAALYRDKIATLARGEEW 28
             ++Q+KYN+KAAAL+RD++AT+A G+EW
Sbjct:    98 SMQEKYNSKAAALFRDQVATVAEGKEW 124

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|F1LU38 Arfgap1 "ADP-ribosylation factor GTPase-activating protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 102 (41.0 bits), Expect = 9.0e-05, P = 9.0e-05
 Identities = 17/27 (62%), Positives = 25/27 (92%)

Query:     2 TIQQKYNTKAAALYRDKIATLARGEEW 28
             ++Q KY+++AAAL+RDK+ATLA G+EW
Sbjct:    83 SLQDKYSSRAAALFRDKVATLAEGKEW 109

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|E5RHC5 ARFGAP1 "ADP-ribosylation factor GTPase-activating protein 1" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 9.0e-05, P = 9.0e-05
 Identities = 16/27 (59%), Positives = 23/27 (85%)

Query:     2 TIQQKYNTKAAALYRDKIATLARGEEW 28
             ++Q+KYN++AAAL+RDK+  LA G EW
Sbjct:    98 SLQEKYNSRAAALFRDKVVALAEGREW 124

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|Q3S4A5 Arfgap1 "ADP-ribosylation factor GTPase activating protein 1 brain isoform" [Rattus norvegicus (taxid:10116)]

 Score = 102 (41.0 bits), Expect = 9.1e-05, P = 9.1e-05
 Identities = 17/27 (62%), Positives = 25/27 (92%)

Query:     2 TIQQKYNTKAAALYRDKIATLARGEEW 28
             ++Q KY+++AAAL+RDK+ATLA G+EW
Sbjct:    98 SLQDKYSSRAAALFRDKVATLAEGKEW 124

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

MGI|MGI:2183559 Arfgap1 "ADP-ribosylation factor GTPase activating protein 1" [Mus musculus (taxid:10090)]

 Score = 102 (41.0 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 17/27 (62%), Positives = 25/27 (92%)

Query:     2 TIQQKYNTKAAALYRDKIATLARGEEW 28
             ++Q KY+++AAAL+RDK+ATLA G+EW
Sbjct:    98 SLQDKYSSRAAALFRDKVATLAEGKEW 124

GO:0000139 "Golgi membrane" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

RGD|708452 Arfgap1 "ADP-ribosylation factor GTPase activating protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 102 (41.0 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 17/27 (62%), Positives = 25/27 (92%)

Query:     2 TIQQKYNTKAAALYRDKIATLARGEEW 28
             ++Q KY+++AAAL+RDK+ATLA G+EW
Sbjct:    98 SLQDKYSSRAAALFRDKVATLAEGKEW 124

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005096 "GTPase activator activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA;ISO

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043547 "positive regulation of GTPase activity" evidence=ISO

GO:0045202 "synapse" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	57
KOG0704|consensus	386		99.6
PLN03114	395	ADP-ribosylation factor GTPase-activating protein	97.0
KOG0706|consensus	454		96.59
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	89.33

>KOG0704|consensus

Probab=99.60  E-value=9.1e-16  Score=115.41  Aligned_cols=50  Identities=50%  Similarity=0.813  Sum_probs=42.9

Q ss_pred             CcchhhhcchHHHHHHHHHHHHHhCCCC-----CCCCCCCCCCCC-CCcCCCcccc
Q psy12164          1 MTIQQKYNTKAAALYRDKIATLARGEEW-----DQSKSSANSYVS-SNISSSSTGS   50 (57)
Q Consensus         1 ~~i~~KYNs~aAalYRdKI~alaEGr~W-----~~~~s~a~~~~p-~~~s~~~~~~   50 (57)
                      |+|++|||++||++|||||+||||||+|     ..++.|+.+|+| ++++.-++..
T Consensus        97 ~~i~eKYns~aAa~yRdki~~laegr~w~d~~~~k~~~p~~syt~a~~~~~~ss~~  152 (386)
T KOG0704|consen   97 WPIREKYNSRAAALYRDKIAALAEGREWNDPPYLKEDNPAQSYTSAAQLGSKSSET  152 (386)
T ss_pred             ccHHHhhccHHHHHHHHHHHHHhcCCcccccccccccCcccccccCCCcCCCcCCc
Confidence            7999999999999999999999999999     566678889999 7776655433

>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

Probab=97.00  E-value=0.00079  Score=51.67  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=23.1

Q ss_pred             CcchhhhcchHHHHHHHHHHHHHhCC
Q psy12164          1 MTIQQKYNTKAAALYRDKIATLARGE   26 (57)
Q Consensus         1 ~~i~~KYNs~aAalYRdKI~alaEGr   26 (57)
                      +++++||++++|++||++|++++++.
T Consensus        99 ~~~~~KY~S~aA~~Yre~L~keVa~~  124 (395)
T PLN03114         99 GKTEAKYTSRAADLYKQILAKEVAKS  124 (395)
T ss_pred             CCcccccCCHHHHHHHHHHHHHHHHh
Confidence            36789999999999999999998764

>KOG0706|consensus

Probab=96.59  E-value=0.0012  Score=51.31  Aligned_cols=29  Identities=34%  Similarity=0.584  Sum_probs=23.6

Q ss_pred             cchhhhcchHHHHHHHHHHHHHhCCCCCC
Q psy12164          2 TIQQKYNTKAAALYRDKIATLARGEEWDQ   30 (57)
Q Consensus         2 ~i~~KYNs~aAalYRdKI~alaEGr~W~~   30 (57)
                      .++.|||++||.+||+||..|+.+..-..
T Consensus       100 d~~aKY~SraA~~Yr~kl~~lv~kam~~~  128 (454)
T KOG0706|consen  100 DANAKYNSRAAKLYREKLKKLVQKAMAEH  128 (454)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHHHHhc
Confidence            46899999999999999998886544333

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=89.33  E-value=0.56  Score=34.84  Aligned_cols=32  Identities=25%  Similarity=0.263  Sum_probs=28.3

Q ss_pred             CcchhhhcchHHHHHHHHHHHHHhCCCCCCCC
Q psy12164          1 MTIQQKYNTKAAALYRDKIATLARGEEWDQSK   32 (57)
Q Consensus         1 ~~i~~KYNs~aAalYRdKI~alaEGr~W~~~~   32 (57)
                      ++|+.|||+..|+.|+.|+..++.+..|....
T Consensus        98 ~~~k~~yd~~v~~~y~~~ky~~~~~~~~~~~~  129 (319)
T COG5347          98 LPIKAKYDSSVAKKYIRKKYELKKFIDDSSSP  129 (319)
T ss_pred             cccccccCHHHHHHHHHHHHHhhhccccccCc
Confidence            46889999999999999999999999994443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	57
3dwd_A	147	Crystal Structure Of The Arfgap Domain Of Human Arf		4e-05
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		8e-05

>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 16/27 (59%), Positives = 23/27 (85%)
Query: 2   TIQQKYNTKAAALYRDKIATLARGEEW 28
           ++Q+KYN++AAAL+RDK+  LA G EW
Sbjct: 117 SLQEKYNSRAAALFRDKVVALAEGREW 143

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 23/27 (85%)
Query: 2   TIQQKYNTKAAALYRDKIATLARGEEW 28
           ++Q+KYN++AAAL+RDK+  LA G EW
Sbjct: 116 SLQEKYNSRAAALFRDKVVALAEGREW 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	57
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-07
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	5e-06
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	4e-05
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	4e-04

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 43.3 bits (102), Expect = 4e-07
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNISSSSTGSRLNSSII 57
            ++Q+KYN++AAAL+RDK+  LA G EW    S A ++             +   ++
Sbjct: 115 WSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRGLFGKKEMRILMV 171

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147

 Score = 39.8 bits (93), Expect = 5e-06
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQS 31
            ++Q+KYN++AAAL+RDK+  LA G EW   
Sbjct: 116 WSLQEKYNSRAAALFRDKVVALAEGREWSLE 146

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163

 Score = 37.2 bits (86), Expect = 4e-05
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEW------DQSKSSANSYVSSNISSSSTGSRLNS 54
              ++KY TKAA  YR  + ++    +       D+ KS  N   + N++ ++     N 
Sbjct: 98  FIPERKYRTKAADHYRKILRSIVHNVDPPAPLPLDEGKSLINYGRNENVNENNKNQYSNE 157

Query: 55  S 55
            
Sbjct: 158 E 158

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149

 Score = 34.6 bits (79), Expect = 4e-04
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 1   MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNISSSSTG 49
                KYN++AA LYR+KI +LA               +  + S  S+G
Sbjct: 106 NDTNAKYNSRAAQLYREKIKSLASQATRKHGTD-----LWLDSSGPSSG 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	57
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	99.26
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	98.1
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	98.01
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	97.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.86
2owa_A	138	Arfgap-like finger domain containing protein; zinc	97.66

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}

Probab=99.26  E-value=1.8e-12  Score=86.13  Aligned_cols=32  Identities=50%  Similarity=0.939  Sum_probs=23.1

Q ss_pred             CcchhhhcchHHHHHHHHHHHHHhCCCCCCCC
Q psy12164          1 MTIQQKYNTKAAALYRDKIATLARGEEWDQSK   32 (57)
Q Consensus         1 ~~i~~KYNs~aAalYRdKI~alaEGr~W~~~~   32 (57)
                      ++|++|||++||++|||||+++||||+|++++
T Consensus       116 ~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~~~  147 (147)
T 3dwd_A          116 WSLQEKYNSRAAALFRDKVVALAEGREWSLES  147 (147)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHHHC--------
T ss_pred             CCHHHhhCCHHHHHHHHHHHHHHcCCcCCCCC
Confidence            57899999999999999999999999999864

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=2.7e-06  Score=56.05  Aligned_cols=33  Identities=42%  Similarity=0.709  Sum_probs=27.1

Q ss_pred             cchhhhcchHHHHHHHHHHHHHh-------CCCCCCCCCC
Q psy12164          2 TIQQKYNTKAAALYRDKIATLAR-------GEEWDQSKSS   34 (57)
Q Consensus         2 ~i~~KYNs~aAalYRdKI~alaE-------Gr~W~~~~s~   34 (57)
                      +|++||++++|++||+||.++|+       ...|.+..+|
T Consensus       107 ~i~~KY~s~~a~~Yr~~l~~~~~~~~~~~~~~~~~~~~~~  146 (149)
T 2crw_A          107 DTNAKYNSRAAQLYREKIKSLASQATRKHGTDLWLDSSGP  146 (149)
T ss_dssp             CHHHHTTSHHHHHHHHHHHHHHHHHHHTTSSSCTTSCCCC
T ss_pred             chhhCcCcHHHHHHHHHHHHHHHHHHHHcCCeeEeCCCCC
Confidence            68999999999999999999987       3456655544

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}

Probab=98.01  E-value=2.5e-06  Score=56.20  Aligned_cols=23  Identities=43%  Similarity=0.759  Sum_probs=21.6

Q ss_pred             cchhhhcchHHHHHHHHHHHHHh
Q psy12164          2 TIQQKYNTKAAALYRDKIATLAR   24 (57)
Q Consensus         2 ~i~~KYNs~aAalYRdKI~alaE   24 (57)
                      +|++|||+++|++|||||.++|+
T Consensus       115 ~~~~KY~s~aA~~Yr~~l~~~~~  137 (144)
T 2p57_A          115 DANTKYNSRAAQMYREKIRQLGS  137 (144)
T ss_dssp             SHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             chhhccCcHHHHHHHHHHHHHHH
Confidence            57899999999999999999986

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}

Probab=97.94  E-value=7.4e-06  Score=55.14  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=23.3

Q ss_pred             chhhhcchHHHHHHHHHHHHHhCCCC
Q psy12164          3 IQQKYNTKAAALYRDKIATLARGEEW   28 (57)
Q Consensus         3 i~~KYNs~aAalYRdKI~alaEGr~W   28 (57)
                      .++||+++||++||++|.+++||++-
T Consensus       100 p~~KY~s~aA~~Yr~~L~~~v~~~~~  125 (163)
T 3sub_A          100 PERKYRTKAADHYRKILRSIVHNVDP  125 (163)
T ss_dssp             HHHHTTBHHHHHHHHHHHHHHTTCCC
T ss_pred             hhhcCCCHHHHHHHHHHHHHHcCCCC
Confidence            46899999999999999999999553

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.86  E-value=1.3e-05  Score=54.80  Aligned_cols=44  Identities=41%  Similarity=0.755  Sum_probs=33.4

Q ss_pred             CcchhhhcchHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcC
Q psy12164          1 MTIQQKYNTKAAALYRDKIATLARGEEWDQSKSSANSYVSSNIS   44 (57)
Q Consensus         1 ~~i~~KYNs~aAalYRdKI~alaEGr~W~~~~s~a~~~~p~~~s   44 (57)
                      +++.++|++++|++|++++.++++|+.|..+.+++....|+...
T Consensus       115 ~~i~~~y~s~~A~lYr~kl~~~~~~~~~~~~~~~~~~~~~~~~~  158 (329)
T 3o47_A          115 WSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPR  158 (329)
T ss_dssp             CCHHHHHHSHHHHHHHHHHHHHHTTCCCCSCC-----CCCCC--
T ss_pred             CCccccccchHHHHHhhhccccccCCccccccccccccCCCCcc
Confidence            46889999999999999999999999999999988666555543

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=97.66  E-value=1.7e-05  Score=51.56  Aligned_cols=23  Identities=4%  Similarity=0.104  Sum_probs=21.6

Q ss_pred             cchhhhcchHHHHHHHHHHHHHh
Q psy12164          2 TIQQKYNTKAAALYRDKIATLAR   24 (57)
Q Consensus         2 ~i~~KYNs~aAalYRdKI~alaE   24 (57)
                      ++++||++++|++|||||.++++
T Consensus       115 ~~~~kY~s~~a~~Y~~kL~~~~~  137 (138)
T 2owa_A          115 KTKEYASSICGRQYKQILDSEIS  137 (138)
T ss_dssp             GGCHHHHSHHHHHHHHHHHHHTT
T ss_pred             CHHHHHhhHHHHHHHHHHHHHHh
Confidence            68999999999999999999986

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00