Psyllid ID: psy12173
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 224 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZPX1 | 185 | Probable ADP-ribosylation | yes | N/A | 0.638 | 0.772 | 0.455 | 9e-32 | |
| B5FYQ0 | 182 | ADP-ribosylation factor-l | yes | N/A | 0.616 | 0.758 | 0.439 | 9e-31 | |
| Q8QHI3 | 182 | ADP-ribosylation factor-l | N/A | N/A | 0.616 | 0.758 | 0.446 | 1e-30 | |
| Q1MTE5 | 182 | ADP-ribosylation factor-l | yes | N/A | 0.616 | 0.758 | 0.439 | 2e-30 | |
| Q9D0J4 | 184 | ADP-ribosylation factor-l | yes | N/A | 0.616 | 0.75 | 0.439 | 1e-29 | |
| O08697 | 184 | ADP-ribosylation factor-l | yes | N/A | 0.616 | 0.75 | 0.439 | 1e-29 | |
| Q19705 | 184 | ADP-ribosylation factor-l | yes | N/A | 0.656 | 0.798 | 0.427 | 1e-29 | |
| Q2TA37 | 184 | ADP-ribosylation factor-l | yes | N/A | 0.660 | 0.804 | 0.423 | 2e-29 | |
| Q06849 | 184 | ADP-ribosylation factor-l | no | N/A | 0.607 | 0.739 | 0.453 | 3e-29 | |
| Q627K4 | 184 | ADP-ribosylation factor-l | N/A | N/A | 0.642 | 0.782 | 0.422 | 2e-28 |
| >sp|Q9ZPX1|ARF5_ARATH Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 136 bits (343), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 104/147 (70%), Gaps = 4/147 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLDNSGK+T++ +I+ +TS+ + PT GFNI + +YTLNI+++GGQ+ +R
Sbjct: 18 RILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTIIYQKYTLNIWDVGGQKTIR 74
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE TD LV+VVDS+D +L MEL NLL ++RL+ +L++ANKQD+ GAL+
Sbjct: 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALT 134
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQA 200
+E+G L+L S+ +H K++ A
Sbjct: 135 PDEIGKVLNLESMDKSRHW-KIVGCSA 160
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|B5FYQ0|ARL3_TAEGU ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 98/141 (69%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + S ++ PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 76 PYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQ 156
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). Required for normal cytokinesis and cilia signaling. Required for targeting proteins to the ciliary membrane by releasing myristoylated protein from unc119 cargo adapters into the cilium. Taeniopygia guttata (taxid: 59729) |
| >sp|Q8QHI3|ARL3_XENLA ADP-ribosylation factor-like protein 3 OS=Xenopus laevis GN=arl3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 98/141 (69%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S +SH + PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNAGKTTLLKQLAS--EDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 76 PYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQ 156
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). Required for normal cytokinesis and cilia signaling. Required for targeting proteins to the ciliary membrane by releasing myristoylated protein from unc119 cargo adapters into the cilium. Xenopus laevis (taxid: 8355) |
| >sp|Q1MTE5|ARL3_DANRE ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN GK+TL+KQ++S + + ++ PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNGGKTTLLKQLASEDIT---HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE+TD+L++V+DSAD + EL LL +++LS VP+LV ANKQD+ A
Sbjct: 76 PYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLVFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQ 156
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). Required for normal cytokinesis and cilia signaling. Required for targeting proteins to the ciliary membrane by releasing myristoylated protein from unc119 cargo adapters into the cilium. Danio rerio (taxid: 7955) |
| >sp|Q9D0J4|ARL2_MOUSE ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++L+LGLDN+GK+T++K+ + + + PT GFNI L+ + LNI+++GGQ+++R
Sbjct: 18 RLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 74
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE TD L++VVDSAD ++ EL++LL ++RL+ +L+ ANKQD+PGALS
Sbjct: 75 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 134
Query: 174 AEEVGVALDLSSISSRQHRIK 194
+ AL+L SI S RI+
Sbjct: 135 CNAIQEALELDSIRSHHWRIQ 155
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle. Mus musculus (taxid: 10090) |
| >sp|O08697|ARL2_RAT ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++L+LGLDN+GK+T++K+ + + + PT GFNI L+ + LNI+++GGQ+++R
Sbjct: 18 RLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 74
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE TD L++VVDSAD ++ EL++LL ++RL+ +L+ ANKQD+PGALS
Sbjct: 75 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 134
Query: 174 AEEVGVALDLSSISSRQHRIK 194
+ AL+L SI S RI+
Sbjct: 135 CNAIQEALELDSIRSHHWRIQ 155
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle. Rattus norvegicus (taxid: 10116) |
| >sp|Q19705|ARL2_CAEEL ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 100/152 (65%), Gaps = 5/152 (3%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +ILILGLDN+GK+TL+K+ T ++PT GF+I + ++ LN++++GGQ++
Sbjct: 16 EMRILILGLDNAGKTTLMKKFLDEPTD---TIEPTLGFDIKTVHFKDFQLNLWDVGGQKS 72
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W YFE TD L++VVDS+D +L + ELK LLG++RL+ +LV+ANK D+PGA
Sbjct: 73 LRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGASLLVLANKSDLPGA 132
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203
+ + LDL SI S H K+ + A S
Sbjct: 133 IDVNSIAQVLDLHSIKS--HHWKIFSCCALSG 162
|
GTP-binding protein that functions in embryogenesis, cytokinesis, germline development and microtubulule cytoskeleton dynamics. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q2TA37|ARL2_BOVIN ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 100/151 (66%), Gaps = 3/151 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++L+LGLDN+GK+T++K+ + + + PT GFNI L+ + LNI+++GGQ+++R
Sbjct: 18 RLLMLGLDNAGKTTILKKFNGEDID---TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 74
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE TD L++VVDSAD ++ EL+NLL ++RL+ +L+ ANKQD+PGALS
Sbjct: 75 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQDLPGALS 134
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSNL 204
+ + AL+L SI S I+ + NL
Sbjct: 135 SNAIREALELDSIRSHHWCIQGCSAVTGENL 165
|
Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle. Bos taurus (taxid: 9913) |
| >sp|Q06849|ARL2_DROME ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 94/139 (67%), Gaps = 3/139 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +IL+LGLDN+GK+T++K+ N + PT GFNI L+ YTLN++++GGQ++
Sbjct: 16 EMRILLLGLDNAGKTTILKRF---NGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKS 72
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W YFE TD LV+VVDSAD +L EL+ LL ++RL+ +LV+ NKQD+PGA
Sbjct: 73 LRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGA 132
Query: 172 LSAEEVGVALDLSSISSRQ 190
LS+ E+ L L I++
Sbjct: 133 LSSNEIKEILHLEDITTHH 151
|
Does not act as an allosteric activator of the cholera toxin catalytic subunit. Drosophila melanogaster (taxid: 7227) |
| >sp|Q627K4|ARL2_CAEBR ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 98/149 (65%), Gaps = 5/149 (3%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+ILILGLDN+GK+TL+K+ T ++PT GF+I + ++ LN++++GGQ+++R
Sbjct: 18 RILILGLDNAGKTTLMKKFLDEPTD---TIEPTLGFDIKTVHFKDFQLNLWDVGGQKSLR 74
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE TD L++VVDS+D +L + ELK LL ++RLS +LV+ANK D+PGA+
Sbjct: 75 SYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGASLLVLANKSDLPGAID 134
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPS 202
+ L+L SI + H K+ + A S
Sbjct: 135 VNSIAQVLELQSIKT--HHWKIFSCCALS 161
|
GTP-binding protein that functions in embryogenesis, cytokinesis, germline development and microtubulule cytoskeleton dynamics. Caenorhabditis briggsae (taxid: 6238) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 224 | ||||||
| 326320021 | 229 | dead end [Acyrthosiphon pisum] gi|239790 | 0.986 | 0.965 | 0.502 | 1e-58 | |
| 383856257 | 235 | PREDICTED: ADP-ribosylation factor-like | 0.816 | 0.778 | 0.486 | 5e-45 | |
| 350419981 | 244 | PREDICTED: ADP-ribosylation factor-like | 0.816 | 0.75 | 0.476 | 2e-43 | |
| 340717819 | 244 | PREDICTED: ADP-ribosylation factor-like | 0.816 | 0.75 | 0.476 | 5e-43 | |
| 110758776 | 243 | PREDICTED: ADP-ribosylation factor-like | 0.924 | 0.851 | 0.429 | 2e-42 | |
| 242008531 | 199 | ADP-ribosylation factor, arf, putative [ | 0.781 | 0.879 | 0.445 | 1e-41 | |
| 380015012 | 243 | PREDICTED: ADP-ribosylation factor-like | 0.924 | 0.851 | 0.429 | 4e-37 | |
| 260831039 | 235 | hypothetical protein BRAFLDRAFT_124271 [ | 0.982 | 0.936 | 0.385 | 6e-36 | |
| 291240256 | 228 | PREDICTED: dead end-like [Saccoglossus k | 0.906 | 0.890 | 0.377 | 6e-36 | |
| 442749907 | 230 | Putative gtp-binding adp-ribosylation fa | 0.937 | 0.913 | 0.397 | 2e-35 |
| >gi|326320021|ref|NP_001191878.1| dead end [Acyrthosiphon pisum] gi|239790642|dbj|BAH71869.1| ACYPI29249 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 167/227 (73%), Gaps = 6/227 (2%)
Query: 1 MSSKIKLLMIASSGIIASVCTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGL 60
M K+K L++ SSG++ VCTYA Y+ WKKR Q++ +DEGFE+VSK+++ ++K+L+LGL
Sbjct: 1 MGFKLKALVVVSSGLVLGVCTYAAYRTWKKR-QNSADDEGFEDVSKLEESLEKKVLVLGL 59
Query: 61 DNSGKSTLIKQISS--GNTSLSHN--LKPTEGFNITILQKG-EYTLNIFELGGQENVRRF 115
+ SGKSTL+ QI G S++ N KPTEGFN+T L G T+NI+E+GG+E+VRR+
Sbjct: 60 EGSGKSTLVSQIVKEVGQKSIASNTLYKPTEGFNVTSLSDGGSPTVNIWEIGGKESVRRY 119
Query: 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE 175
W +F+DTD+LVFVVD+++ S V E+K+LLGD RL++VPILV+ANKQD+ GAL+AE
Sbjct: 120 WPKFFQDTDILVFVVDASNNSNQSVVVSEIKSLLGDARLASVPILVLANKQDMVGALNAE 179
Query: 176 EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYALS 222
++ LDL SI SR H++K++ TQ + +H +V+E + + LS
Sbjct: 180 QISNVLDLKSIPSRSHQVKVLETQTRPETNEIHQTVLEVRKVLLKLS 226
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383856257|ref|XP_003703626.1| PREDICTED: ADP-ribosylation factor-like protein 2-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 91/187 (48%), Positives = 131/187 (70%), Gaps = 4/187 (2%)
Query: 16 IASVCTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSG 75
A + +Y Y+YWKKR T DEGFE+VSK DD +++IL+LGLD +GK+++I Q+
Sbjct: 17 CACIGSYIAYRYWKKRELLTI-DEGFEDVSKADDSREKRILLLGLDGAGKTSIINQLCVA 75
Query: 76 N---TSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132
N S + KPTEG ++ ++ G Y+ N++++GG + R+ W + +DTDLL+FVVD+
Sbjct: 76 NGDENSYTVPPKPTEGSSVYRIKNGLYSYNVWDIGGADATRKHWTAFLQDTDLLLFVVDA 135
Query: 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHR 192
+D +KL +AA+ LK LLGD RL TVPIL+IANKQD P AL +EV ALDL SIS +H+
Sbjct: 136 SDVNKLSLAAITLKQLLGDARLETVPILIIANKQDCPNALKLDEVKKALDLLSISPHKHK 195
Query: 193 IKLIATQ 199
+++I Q
Sbjct: 196 VEIIGCQ 202
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350419981|ref|XP_003492360.1| PREDICTED: ADP-ribosylation factor-like protein 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/189 (47%), Positives = 128/189 (67%), Gaps = 6/189 (3%)
Query: 16 IASVC--TYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQIS 73
I+ C TY Y+YWKKR + DEGF+EVSK+DD ++++L+LGLD +GK+++I QI
Sbjct: 15 ISCTCIGTYIAYRYWKKR-ELLAIDEGFDEVSKIDDTHEKRVLLLGLDGAGKTSIINQIC 73
Query: 74 SGN---TSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130
N TS + KPTEG + ++ G N++++GG + R++W + +DTDLL+FVV
Sbjct: 74 VANGDETSYTVPPKPTEGSTVYKIKNGVLFYNVWDIGGSDPTRKYWTAFLQDTDLLLFVV 133
Query: 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQ 190
D++D +KL AA LK LL D R+ +PILVIANKQD P AL EEV ALDL SIS +
Sbjct: 134 DASDVNKLSSAASILKQLLSDARMDDIPILVIANKQDCPNALKPEEVKKALDLLSISPHK 193
Query: 191 HRIKLIATQ 199
H++++I Q
Sbjct: 194 HKVEIIGCQ 202
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340717819|ref|XP_003397373.1| PREDICTED: ADP-ribosylation factor-like protein 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/189 (47%), Positives = 129/189 (68%), Gaps = 6/189 (3%)
Query: 16 IASVC--TYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQIS 73
I+ C TY Y+YWKKR + DEGF+EVSK+DD ++++L+LGLD +GK+++I QI
Sbjct: 15 ISCTCIGTYIAYRYWKKR-ELLAIDEGFDEVSKIDDTHEKRVLLLGLDGAGKTSIINQIC 73
Query: 74 SGN-TSLSHNL--KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130
N +S+ + KPTEG + ++ G N++++GG + R++W + +DTDLLVFVV
Sbjct: 74 VANGDEISYTVPPKPTEGSTVYKIKNGVLFYNVWDIGGSDPTRKYWTAFLQDTDLLVFVV 133
Query: 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQ 190
D++D +KL AA LK LL D R+ +PILVIANKQD P AL EEV ALDL SIS +
Sbjct: 134 DASDVNKLSSAASILKQLLSDARMDDIPILVIANKQDCPNALKPEEVKKALDLLSISPHK 193
Query: 191 HRIKLIATQ 199
H++++I Q
Sbjct: 194 HKVEIIGCQ 202
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110758776|ref|XP_001121803.1| PREDICTED: ADP-ribosylation factor-like protein 1-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 137/221 (61%), Gaps = 14/221 (6%)
Query: 16 IASVC--TYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQIS 73
I C TY Y+YWKKR + DEGFEEVSK+DD ++++L+LGL +GK+++I QI
Sbjct: 15 IGCTCIGTYIAYRYWKKR-ELLAIDEGFEEVSKIDDSHEKRVLLLGLSGAGKTSIINQIC 73
Query: 74 SGN---TSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130
N TS KPTEG ++ ++ G N++++GG + R++W + +DTDLL+FVV
Sbjct: 74 VANGDETSYIVPPKPTEGSSVYRIKNGVLFYNVWDIGGSDATRKYWTAFLQDTDLLLFVV 133
Query: 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQ 190
D++D +KL AA LK LL D R+ VPILV+ANKQD P AL EEV ALDL SIS +
Sbjct: 134 DASDINKLSSAASILKQLLSDARMDDVPILVVANKQDCPSALKPEEVKKALDLLSISPHK 193
Query: 191 HRIKLIATQA------PSNLHH--LHVSVVEAEQAMYALSQ 223
H++++I Q P + H SV + M+ +++
Sbjct: 194 HKVEIIGCQTRPFPEIPETTEYTWYHASVDSVRKKMFYMAK 234
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242008531|ref|XP_002425056.1| ADP-ribosylation factor, arf, putative [Pediculus humanus corporis] gi|212508721|gb|EEB12318.1| ADP-ribosylation factor, arf, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 129/175 (73%)
Query: 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFEL 106
++D ++++L+LGL+ +GK+T++ QISSG+ S +LKPTEGFN+T ++ ++NI+E+
Sbjct: 22 IEDSREKRVLVLGLEGAGKTTILSQISSGSFINSKDLKPTEGFNVTTMEINGISINIWEI 81
Query: 107 GGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
GG++NVR +W T+ +DTD+LVFVVD+++ S + +A E++ LL D RL+ VP+L+IANKQ
Sbjct: 82 GGRDNVRTYWPTFLQDTDVLVFVVDASNDSNISLAIKEIRWLLADDRLANVPVLLIANKQ 141
Query: 167 DVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221
DVP AL+ +++ ALDL S+ +H+IK++ Q PS H S++E E+ + +
Sbjct: 142 DVPNALTPDQIADALDLGSVLPSKHKIKVLGAQTPSKATDRHQSILEVEKTLLLM 196
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380015012|ref|XP_003691506.1| PREDICTED: ADP-ribosylation factor-like protein 3-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 136/221 (61%), Gaps = 14/221 (6%)
Query: 16 IASVC--TYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQIS 73
I C TY Y+YWKKR + DEGFEEVSK+DD ++++L+LGL ++GK+++I QI
Sbjct: 15 IGCTCIGTYIAYRYWKKR-ELLAIDEGFEEVSKIDDSHEKRVLLLGLSSAGKTSIINQIC 73
Query: 74 SGN---TSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130
N TS KPTEG ++ ++ G N++++GG + R++W + +DTDLL+FVV
Sbjct: 74 VANGDETSYIAPPKPTEGSSVYRIKNGVLFYNVWDIGGSDATRKYWTAFLQDTDLLLFVV 133
Query: 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQ 190
DS+D SKL AA LK LL D R+ VPILV+ANKQD AL EEV ALDL SIS +
Sbjct: 134 DSSDKSKLSSAASILKQLLSDTRMDDVPILVVANKQDEIYALKPEEVKKALDLLSISPHK 193
Query: 191 HRIKLIATQA--------PSNLHHLHVSVVEAEQAMYALSQ 223
H++++I Q + H SV + M+ +++
Sbjct: 194 HKVEIIGCQTRPFPKISETNEYTWYHASVDSVRKKMFYMAK 234
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|260831039|ref|XP_002610467.1| hypothetical protein BRAFLDRAFT_124271 [Branchiostoma floridae] gi|229295833|gb|EEN66477.1| hypothetical protein BRAFLDRAFT_124271 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 133/223 (59%), Gaps = 3/223 (1%)
Query: 1 MSSKIKLLMIASSGIIASVCTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGL 60
M K+ +L+ +++ +A + Y ++ + +DEG E ++ +++I++LGL
Sbjct: 15 MWRKVAVLVGSATAAVALLVLVERYLRRRRGGWTDVQDEGIEMDMVEEESDEKRIVVLGL 74
Query: 61 DNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYF 120
D GKS+ + I+ N +KPTEGFN+ +Q + +LNI+E+GG ENVR +W +
Sbjct: 75 DGVGKSSFLACIA--NQDCRQTMKPTEGFNVMCIQTRQTSLNIWEIGGTENVRSYWANFL 132
Query: 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVA 180
+TD+LVFVVDS D +LP+A EL +L L VP+LV+ANKQDV GALS E+VG A
Sbjct: 133 PNTDVLVFVVDSTDKGRLPLAKEELHKVLAHPALKGVPLLVLANKQDVSGALSVEQVGSA 192
Query: 181 LDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYALSQ 223
LDL S S + ++ T+ P L S +AE+ + LS+
Sbjct: 193 LDLGSCRSNRA-AHILPTEVPPGLPTKTDSTKKAEEMLSTLSR 234
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|291240256|ref|XP_002740037.1| PREDICTED: dead end-like [Saccoglossus kowalevskii] | Back alignment and taxonomy information |
|---|
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 134/209 (64%), Gaps = 6/209 (2%)
Query: 6 KLLMIASSGIIASVCTYATYQYWKKRRQSTPEDEG-FEEVSKVDDIFQRKILILGLDNSG 64
K +++ S+G+ +V Y + + + S + +G FE ++ DD ++++L+LGLD SG
Sbjct: 14 KTVVVLSAGV--AVAGVGCYLFHRNKDSSEDDMDGTFEVLTTEDDSPEKRVLVLGLDGSG 71
Query: 65 KSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTD 124
K++++ ++ N KPTEGF++ ++Q TLN++E+GG+ENVR +W+ + +DT
Sbjct: 72 KTSILSCLA--NQENKEETKPTEGFHVIVVQSEGVTLNVWEIGGRENVRSYWDNFIQDTQ 129
Query: 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLS 184
+L FVVDS D ++ +A EL+ +L D+R+ VP++V+ANKQD+PGA +A EV LDL
Sbjct: 130 VLTFVVDSTDTNRFALAMDELRKVLSDERMDGVPVIVVANKQDLPGAKNASEVREFLDLQ 189
Query: 185 SISSRQHRIKLIATQAPSNLHHLHVSVVE 213
S+ ++ I ++ TQ P N L V +E
Sbjct: 190 SV-AKNREIHVVETQVPLNSTQLGVKTLE 217
|
Source: Saccoglossus kowalevskii Species: Saccoglossus kowalevskii Genus: Saccoglossus Family: Harrimaniidae Order: Class: Enteropneusta Phylum: Hemichordata Superkingdom: Eukaryota |
| >gi|442749907|gb|JAA67113.1| Putative gtp-binding adp-ribosylation factor arf1 [Ixodes ricinus] | Back alignment and taxonomy information |
|---|
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 132/219 (60%), Gaps = 9/219 (4%)
Query: 6 KLLMIASSGIIASVCTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGK 65
K+L I S + A YWK+R + + +V + D +R IL+LGL+ +GK
Sbjct: 15 KVLFIGSIIAVGVTTLLALGYYWKRRSRRC-----YSDVDESTDSGKR-ILVLGLNEAGK 68
Query: 66 STLIKQISSGNTSLSHNLKPTEGFNITILQ-KGEYTLNIFELGGQENVRRFWNTYFEDTD 124
S+ + ++S + +L+ +L+PTEGFN+ + + +LN +ELGG E VR +W + DT+
Sbjct: 69 SSFLLRLSRPDAALT-SLQPTEGFNVVCINSENGSSLNFWELGGSETVRSYWPNFLHDTN 127
Query: 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLS 184
+LV+VVDSAD +L AA E + +L D+RL VPILV+ANKQD+PGA S EE+ L L
Sbjct: 128 VLVYVVDSADTKRLRRAAHEFQRVLQDERLQKVPILVLANKQDLPGAESVEEIATILGLE 187
Query: 185 SISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYALSQ 223
+ R R+ ++ Q PS+ +H SV EA+ + LS
Sbjct: 188 ELRRRSFRVHILPLQMPSDTNH-KSSVAEAKHMIIRLSH 225
|
Source: Ixodes ricinus Species: Ixodes ricinus Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 224 | ||||||
| TAIR|locus:2062085 | 185 | TTN5 "TITAN 5" [Arabidopsis th | 0.647 | 0.783 | 0.449 | 1.4e-30 | |
| MGI|MGI:1929699 | 182 | Arl3 "ADP-ribosylation factor- | 0.616 | 0.758 | 0.446 | 3.8e-30 | |
| RGD|69327 | 182 | Arl3 "ADP-ribosylation factor- | 0.616 | 0.758 | 0.453 | 3.8e-30 | |
| UNIPROTKB|P37996 | 182 | Arl3 "ADP-ribosylation factor- | 0.616 | 0.758 | 0.453 | 3.8e-30 | |
| UNIPROTKB|E2RAG8 | 182 | ARL3 "Uncharacterized protein" | 0.616 | 0.758 | 0.446 | 4.9e-30 | |
| UNIPROTKB|J9NTN4 | 201 | ARL3 "Uncharacterized protein" | 0.616 | 0.686 | 0.446 | 4.9e-30 | |
| UNIPROTKB|P36405 | 182 | ARL3 "ADP-ribosylation factor- | 0.616 | 0.758 | 0.446 | 4.9e-30 | |
| UNIPROTKB|Q52NJ4 | 182 | ARL3 "ADP-ribosylation factor- | 0.616 | 0.758 | 0.446 | 4.9e-30 | |
| UNIPROTKB|B5FYQ0 | 182 | ARL3 "ADP-ribosylation factor- | 0.616 | 0.758 | 0.446 | 4.9e-30 | |
| UNIPROTKB|G1K192 | 181 | ARL3 "ADP-ribosylation factor- | 0.616 | 0.762 | 0.446 | 6.2e-30 |
| TAIR|locus:2062085 TTN5 "TITAN 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 67/149 (44%), Positives = 105/149 (70%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +IL++GLDNSGK+T++ +I+ +TS+ + PT GFNI + +YTLNI+++GGQ+
Sbjct: 16 EMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTIIYQKYTLNIWDVGGQKT 72
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W YFE TD LV+VVDS+D +L MEL NLL ++RL+ +L++ANKQD+ GA
Sbjct: 73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGA 132
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQA 200
L+ +E+G L+L S+ +H K++ A
Sbjct: 133 LTPDEIGKVLNLESMDKSRHW-KIVGCSA 160
|
|
| MGI|MGI:1929699 Arl3 "ADP-ribosylation factor-like 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 63/141 (44%), Positives = 100/141 (70%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + +SH + PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNAGKTTLLKQLASED--ISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W +YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 76 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQ 156
|
|
| RGD|69327 Arl3 "ADP-ribosylation factor-like 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 64/141 (45%), Positives = 100/141 (70%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + +SH + PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNAGKTTLLKQLASED--ISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W +YFE+TD+L++V+DSAD + EL LL +++LS VP+LV ANKQD+ A
Sbjct: 76 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLVFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 AAEIAEGLNLHTIRDRVWQIQ 156
|
|
| UNIPROTKB|P37996 Arl3 "ADP-ribosylation factor-like protein 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 64/141 (45%), Positives = 100/141 (70%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + +SH + PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNAGKTTLLKQLASED--ISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W +YFE+TD+L++V+DSAD + EL LL +++LS VP+LV ANKQD+ A
Sbjct: 76 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLVFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 AAEIAEGLNLHTIRDRVWQIQ 156
|
|
| UNIPROTKB|E2RAG8 ARL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 63/141 (44%), Positives = 99/141 (70%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + +SH + PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNAGKTTLLKQLASED--ISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 76 PYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQ 156
|
|
| UNIPROTKB|J9NTN4 ARL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 63/141 (44%), Positives = 99/141 (70%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + +SH + PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNAGKTTLLKQLASED--ISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 76 PYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQ 156
|
|
| UNIPROTKB|P36405 ARL3 "ADP-ribosylation factor-like protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 63/141 (44%), Positives = 99/141 (70%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + +SH + PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNAGKTTLLKQLASED--ISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 76 PYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQ 156
|
|
| UNIPROTKB|Q52NJ4 ARL3 "ADP-ribosylation factor-like protein 3" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 63/141 (44%), Positives = 99/141 (70%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + +SH + PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNAGKTTLLKQLASED--ISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 76 PYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQ 156
|
|
| UNIPROTKB|B5FYQ0 ARL3 "ADP-ribosylation factor-like protein 3" [Taeniopygia guttata (taxid:59729)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 63/141 (44%), Positives = 99/141 (70%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + +SH + PT+GFNI +Q + LN++++GGQ +R
Sbjct: 19 RILLLGLDNAGKTTLLKQLASED--ISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 76 PYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAP 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQ 156
|
|
| UNIPROTKB|G1K192 ARL3 "ADP-ribosylation factor-like protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 63/141 (44%), Positives = 99/141 (70%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + +SH + PT+GFNI +Q + LN++++GGQ +R
Sbjct: 18 RILLLGLDNAGKTTLLKQLASED--ISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 75 PYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 174 AEEVGVALDLSSISSRQHRIK 194
A E+ L+L +I R +I+
Sbjct: 135 ASEIAEGLNLHTIRDRFWQIQ 155
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZPX1 | ARF5_ARATH | No assigned EC number | 0.4557 | 0.6383 | 0.7729 | yes | N/A |
| Q2TA37 | ARL2_BOVIN | No assigned EC number | 0.4238 | 0.6607 | 0.8043 | yes | N/A |
| O08697 | ARL2_RAT | No assigned EC number | 0.4397 | 0.6160 | 0.75 | yes | N/A |
| P38116 | ARL1_YEAST | No assigned EC number | 0.4214 | 0.6116 | 0.7486 | yes | N/A |
| Q09767 | ARL_SCHPO | No assigned EC number | 0.4 | 0.6116 | 0.7365 | yes | N/A |
| Q1MTE5 | ARL3_DANRE | No assigned EC number | 0.4397 | 0.6160 | 0.7582 | yes | N/A |
| B5FYQ0 | ARL3_TAEGU | No assigned EC number | 0.4397 | 0.6160 | 0.7582 | yes | N/A |
| Q9D0J4 | ARL2_MOUSE | No assigned EC number | 0.4397 | 0.6160 | 0.75 | yes | N/A |
| P36404 | ARL2_HUMAN | No assigned EC number | 0.4105 | 0.6607 | 0.8043 | yes | N/A |
| Q19705 | ARL2_CAEEL | No assigned EC number | 0.4276 | 0.6562 | 0.7989 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 224 | |||
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 9e-50 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 3e-49 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 1e-48 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 4e-48 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 2e-38 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 9e-38 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 3e-37 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 4e-36 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 1e-35 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 3e-35 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 8e-34 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 2e-33 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 2e-31 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 1e-29 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 8e-29 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 2e-28 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 2e-28 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 5e-27 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 4e-26 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 4e-23 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 4e-20 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 1e-16 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 1e-15 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 3e-15 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 3e-13 | |
| cd00880 | 161 | cd00880, Era_like, E | 1e-08 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 2e-07 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 3e-07 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 2e-05 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 5e-05 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 6e-05 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 9e-05 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 9e-05 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 1e-04 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 7e-04 | |
| PRK12297 | 424 | PRK12297, obgE, GTPase CgtA; Reviewed | 9e-04 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 0.002 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 0.002 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 0.003 | |
| TIGR02729 | 329 | TIGR02729, Obg_CgtA, Obg family GTPase CgtA | 0.003 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 0.004 | |
| cd01892 | 180 | cd01892, Miro2, Mitochondrial Rho family 2 (Miro2) | 0.004 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 9e-50
Identities = 55/140 (39%), Positives = 87/140 (62%), Gaps = 3/140 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLD +GK+T++ ++ G PT GFN+ ++ ++++GGQ+ +R
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVV---TTIPTIGFNVETVEYKNVKFTVWDVGGQDKIR 57
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+E+TD L+FVVDS+D ++ A EL LL ++ L P+L++ANKQD+PGAL+
Sbjct: 58 PLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALT 117
Query: 174 AEEVGVALDLSSISSRQHRI 193
E+ L L SI R+ I
Sbjct: 118 ESELIELLGLESIKGRRWHI 137
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 3e-49
Identities = 65/144 (45%), Positives = 100/144 (69%), Gaps = 3/144 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +IL+LGLDN+GK+T++KQ++S + S ++ PT+GFNI +Q + LN++++GGQ
Sbjct: 15 EVRILLLGLDNAGKTTILKQLASEDIS---HITPTQGFNIKNVQADGFKLNVWDIGGQRK 71
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W YFE+TD+L++V+DSAD + A EL LL +++L+ VP+LV ANKQD+ A
Sbjct: 72 IRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTA 131
Query: 172 LSAEEVGVALDLSSISSRQHRIKL 195
AEEV AL+L I R I+
Sbjct: 132 APAEEVAEALNLHDIRDRSWHIQA 155
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 1e-48
Identities = 66/140 (47%), Positives = 98/140 (70%), Gaps = 3/140 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+T++K+ + + S + PT GFNI L+ Y LNI+++GGQ+++R
Sbjct: 16 RILMLGLDNAGKTTILKKFNGEDIS---TISPTLGFNIKTLEYNGYKLNIWDVGGQKSLR 72
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE TD L++VVDS+D ++L EL+ LL ++RL+ +L+ ANKQD+PGALS
Sbjct: 73 SYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALS 132
Query: 174 AEEVGVALDLSSISSRQHRI 193
EE+ L+L SI S RI
Sbjct: 133 PEEIREVLELDSIKSHHWRI 152
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 4e-48
Identities = 55/136 (40%), Positives = 85/136 (62%), Gaps = 3/136 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+ILILGLDN+GK+T++ ++ G PT GFN+ + ++++GGQE++R
Sbjct: 16 RILILGLDNAGKTTILYKLKLGEIV---TTIPTIGFNVETVTYKNVKFTVWDVGGQESLR 72
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W YF +TD ++FVVDSAD ++ A EL LL ++ L+ P+L++ANKQD+PGA+S
Sbjct: 73 PLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMS 132
Query: 174 AEEVGVALDLSSISSR 189
E+ L L + R
Sbjct: 133 EAEIRELLGLHELKDR 148
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-38
Identities = 57/139 (41%), Positives = 93/139 (66%), Gaps = 5/139 (3%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ-KGEYTLNIFELGGQENV 112
++L+LGLD++GKSTL+ ++ + PT GFN+ +LQ + +L ++++GGQE +
Sbjct: 1 QVLLLGLDSAGKSTLLYKLKHAELVTT---IPTVGFNVEMLQLEKHLSLTVWDVGGQEKM 57
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172
R W Y E+TD LV+VVDS+D ++L + ELK++L ++ + VP++++ANKQD+PGAL
Sbjct: 58 RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL 117
Query: 173 SAEEVGVALDLSSI-SSRQ 190
+AEE+ L S R
Sbjct: 118 TAEEITRRFKLKKYCSDRD 136
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 9e-38
Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
K++I+GLDN+GK+T++ Q G + PT G N+ + ++++GGQE++R
Sbjct: 17 KVIIVGLDNAGKTTILYQFLLGEVVHTS---PTIGSNVEEIVYKNIRFLMWDIGGQESLR 73
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
WNTY+ +TD ++ V+DS D +LP+ EL +L + L +LV+ANKQD+ GA++
Sbjct: 74 SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT 133
Query: 174 AEEVGVALDLSSISSRQHRI 193
E+ +L L+SI I
Sbjct: 134 PAEISESLGLTSIRDHTWHI 153
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-37
Identities = 59/135 (43%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR 114
I ++GL NSGK+TL+ I+SG S + PT GFN+ + KG T+ +++LGGQ R
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFS--EDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRS 59
Query: 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA 174
W Y + +V+VVD+AD KL VA EL +LL L +P+LV+ NK D+PGALS
Sbjct: 60 MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV 119
Query: 175 EEVGVALDLSSISSR 189
+E+ ++L SI+ R
Sbjct: 120 DELIEQMNLKSITDR 134
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 4e-36
Identities = 54/140 (38%), Positives = 85/140 (60%), Gaps = 3/140 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+ILILGLD +GK+T++ ++ G + PT GFN+ + +++LGGQ ++R
Sbjct: 1 RILILGLDGAGKTTILYRLQVGEVVTT---IPTIGFNVETVTYKNLKFQVWDLGGQTSIR 57
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W Y+ +TD +++VVDS D +L ++ EL +L ++ L +LV ANKQD+PGALS
Sbjct: 58 PYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALS 117
Query: 174 AEEVGVALDLSSISSRQHRI 193
EV L LS + R +I
Sbjct: 118 EAEVAEKLGLSELKDRTWQI 137
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-35
Identities = 58/149 (38%), Positives = 89/149 (59%), Gaps = 5/149 (3%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR 114
IL+LGLD +GK++L+ +S SL ++ PT GFN + + + + E+GG +N+R+
Sbjct: 2 ILVLGLDGAGKTSLLHSLS-SERSL-ESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRK 59
Query: 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA 174
+W Y + L+FVVDSAD +LP+A EL LL Q +P++V+ANKQD+P A S
Sbjct: 60 YWKRYLSGSQGLIFVVDSADSERLPLARQELHQLL--QHPPDLPLVVLANKQDLPAARSV 117
Query: 175 EEVGVALDLSSISSRQHRIKLIATQAPSN 203
+E+ L+L I +R R L T +
Sbjct: 118 QEIHKELELEPI-ARGRRWILQGTSLDDD 145
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-35
Identities = 55/131 (41%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENV 112
KI+ LGLDN+GK+TL+ + PT L G F+LGG E
Sbjct: 20 AKIVFLGLDNAGKTTLLHMLKDDRL---AQHVPTLHPTSEELTIGNVKFTTFDLGGHEQA 76
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172
RR W YF + D +VF+VD+ADP + + EL +LL D+ L+ VPIL++ NK D PGA+
Sbjct: 77 RRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDKPGAV 136
Query: 173 SAEEVGVALDL 183
S EE+ AL L
Sbjct: 137 SEEELREALGL 147
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 8e-34
Identities = 46/135 (34%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLS-----HNLKPTEGFNITILQKGEYTLNIFELGGQ 109
+LILGLDN+GK+T ++Q + + + PT G NI ++ G+ L ++LGGQ
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169
E +R W+ Y+ ++ +++V+DS D + + + ++ ++ L VP+LV+ANKQD+P
Sbjct: 62 EELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLP 121
Query: 170 GALSAEEVGVALDLS 184
ALS E+ D
Sbjct: 122 DALSVAEIKEVFDDC 136
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-33
Identities = 55/137 (40%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR 114
IL+LGLDNSGK+T+I Q+ N S N+ PT GFN+ +KG + F++ GQ R
Sbjct: 2 ILVLGLDNSGKTTIINQLKPSNAQ-SQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRG 60
Query: 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLG--DQRLSTVPILVIANKQDVPGAL 172
W Y+++ ++FV+DS+D ++ VA EL+ LL D + +PIL ANK D+P AL
Sbjct: 61 LWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDAL 120
Query: 173 SAEEVGVALDLSSISSR 189
+A ++ L L +I +
Sbjct: 121 TAVKITQLLCLENIKDK 137
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-31
Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLD +GK+T++ ++ G + + PT GFN+ + N++++GGQ+ +R
Sbjct: 11 RILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGQDKIR 67
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+ T L+FVVDSAD ++ A EL ++ D+ + +LV ANKQD+P A+
Sbjct: 68 PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK 127
Query: 174 AEEVGVALDLSSISSR 189
E+ L L+ I R
Sbjct: 128 PHEIQEKLGLTRIRDR 143
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-29
Identities = 53/143 (37%), Positives = 88/143 (61%), Gaps = 7/143 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGN--TSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+IL++GLD +GK+T++ ++ G T++ PT GFN+ ++ + ++++GGQ+
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R W YF++T L+FVVDS D ++ A EL+ +L + L +LV ANKQD+P A
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116
Query: 172 LSAEEVGVALDLSSISSRQHRIK 194
+SA EV L L S+ +R I+
Sbjct: 117 MSAAEVTDKLGLHSLRNRNWYIQ 139
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 8e-29
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR 114
+L +GLDN+GK+TL+ + + PT GF T L+ +Y + IF+LGG N R
Sbjct: 2 LLTVGLDNAGKTTLVSALQGEIPK---KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRG 58
Query: 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA 174
W Y+ + LVFVVDS+D ++ L+ LL R+S PILV+ANKQD AL
Sbjct: 59 IWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG 118
Query: 175 EEV 177
+V
Sbjct: 119 ADV 121
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-28
Identities = 50/141 (35%), Positives = 84/141 (59%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G + PT GFN+ ++ ++++GGQ+ +R
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEVVTT---IPTIGFNVETVEYKNLKFTMWDVGGQDKLR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+++T+ L+FVVDS D ++ A EL+ +L + L +LV ANKQD+P A+S
Sbjct: 76 PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS 135
Query: 174 AEEVGVALDLSSISSRQHRIK 194
EV L L S+ R I+
Sbjct: 136 TTEVTEKLGLHSVRQRNWYIQ 156
|
Length = 182 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 2e-28
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G + + PT GFN+ + + ++++GGQ+ +R
Sbjct: 15 RILMVGLDAAGKTTILYKLKLGESVTT---IPTIGFNVETVTYKNISFTVWDVGGQDKIR 71
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+ +T L+FVVDS D ++ A EL +L + L ILV ANKQD+P A+
Sbjct: 72 PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK 131
Query: 174 AEEVGVALDLSSISSR 189
A E+ L L SI R
Sbjct: 132 AAEITEKLGLHSIRDR 147
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-27
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
KIL LGLDN+GK+TL+ + N L+ +PT+ L G F+LGG + R
Sbjct: 19 KILFLGLDNAGKTTLLHMLK--NDRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQAR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
R W YF + + +V++VD+ D + + EL LL D+ L+TVP L++ NK D P A S
Sbjct: 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAAS 135
Query: 174 AEEVGVALDLSSISSRQ 190
+E+ AL L++ ++ +
Sbjct: 136 EDELRYALGLTNTTTGK 152
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 4e-26
Identities = 50/143 (34%), Positives = 85/143 (59%), Gaps = 3/143 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +IL++GLD +GK+T++ ++ G + PT GFN+ ++ + ++++GGQ+
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDK 73
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R W YF++T L+FVVDS D ++ A EL +L + L +LV ANKQD+P A
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133
Query: 172 LSAEEVGVALDLSSISSRQHRIK 194
++A E+ L L S+ R I+
Sbjct: 134 MNAAEITDKLGLHSLRQRHWYIQ 156
|
Length = 181 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 4e-23
Identities = 52/139 (37%), Positives = 79/139 (56%), Gaps = 8/139 (5%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-----ITILQKGEYTLNIFELGGQ 109
I++LGLD++GK+T++ ++ N PT+GFN +++ T + +++GGQ
Sbjct: 6 IVMLGLDSAGKTTVLYRLKFNEFV---NTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQ 62
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169
E +R W +Y TD +VFVVDS D ++ A EL + VP+LV+ANKQD+P
Sbjct: 63 EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLP 122
Query: 170 GALSAEEVGVALDLSSISS 188
AL EV L L +SS
Sbjct: 123 NALPVSEVEKLLALHELSS 141
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 4e-20
Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+++ LGLD +GK+T++ ++ PT GFN+ ++ I+++GG+ +R
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFM---QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLR 57
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+ +T +VFV+DS+ ++ A EL LL ++ L +L+ ANKQDV GALS
Sbjct: 58 PLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALS 117
Query: 174 AEEVGVALDLSSI 186
EE+ L L +
Sbjct: 118 VEEMTELLSLHKL 130
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 1e-16
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 54 KILILGLDNSGKSTLIKQIS---SGNTSLSHN-LKPTEGFNITILQ-------KGEYTLN 102
KI+++G +GK+T ++ +S T + + T+ + ++
Sbjct: 12 KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVH 71
Query: 103 IFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVI 162
+F GQE + W + +VDS+ P A E+ + L + +P++V
Sbjct: 72 LFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF--HAEEIIDFL--TSRNPIPVVVA 127
Query: 163 ANKQDVPGALSAEEVGVALDLSSIS 187
NKQD+ AL E++ AL L +S
Sbjct: 128 INKQDLFDALPPEKIREALKLELLS 152
|
Length = 187 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 1e-15
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 6/130 (4%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI----TILQKGEYTLNIFELG 107
+ KI++LG GK+TL+ ++ PT G + L +++
Sbjct: 5 EFKIVVLGDGGVGKTTLLNRLVGD--EFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTA 62
Query: 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
GQE R Y+ + ++ V DS E L + VPIL++ NK D
Sbjct: 63 GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122
Query: 168 VPGALSAEEV 177
+ S+ E
Sbjct: 123 LFDEQSSSEE 132
|
Length = 219 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-15
Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 15/156 (9%)
Query: 56 LILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNIT--ILQKGEYTLNIFELGGQENV 112
+++G GKS+L+ + G S T ++ L KG+ L + + G +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60
Query: 113 RRFWNT-----YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
DL++ VVDS D +L R +PI+++ NK D
Sbjct: 61 GGLGREELARLLLRGADLILLVVDSTDR---ESEEDAKLLILRRLRKEGIPIILVGNKID 117
Query: 168 VPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203
L E L ++ + + A +
Sbjct: 118 ----LLEEREVEELLRLEELAKILGVPVFEVSAKTG 149
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-13
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 16/143 (11%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKGE-YTLNIFELGG 108
KI+I+G N GKSTL+ ++ GN KP N I + G+ Y N+ + G
Sbjct: 2 IKIVIVGDPNVGKSTLLNRLL-GNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRL------STVPILVI 162
QE+ Y+ + + V D + V +E + L + S VPI+++
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIV----ILVLDVE-EILEKQTKEIIHHAESGVPIILV 115
Query: 163 ANKQDVPGALSAEEVGVALDLSS 185
NK D+ A V +
Sbjct: 116 GNKIDLRDAKLKTHVAFLFAKLN 138
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-08
Identities = 38/154 (24%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 57 ILGLDNSGKSTLIKQISSGNTSLSHNLKPT----EGFNITILQKGEYTL----NIFELG- 107
I G N GKS+L+ + N + + T +L G L + E G
Sbjct: 2 IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEGG 61
Query: 108 -GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
G+E V + DL++ VVDS PV LL R P+L++ NK
Sbjct: 62 LGRERVEEARQV-ADRADLVLLVVDS---DLTPVEEEAKLGLL---RERGKPVLLVLNKI 114
Query: 167 DVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200
D+ E L + +IA A
Sbjct: 115 DLVP----ESEEEELLRERKLELLPDLPVIAVSA 144
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-07
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSG----NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109
K++++G SGKS+L+ Q+ G T + + LNI++ GG+
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQ--GDTLAVDTLEVDGDTGLLNIWDFGGR 58
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLST-VPILVIANKQ 166
E ++ + + D ++ V D D L + + L ++L +P++++ NK
Sbjct: 59 EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-07
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+L+LG +SGK+ L ++++G + +++P + KG L + ++ G E +R
Sbjct: 3 VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKG-KKLTLVDVPGHEKLR 61
Query: 114 -RFWNTYFEDTDLLVFVVDSAD-PSKLPVAAMELKNLLGDQRLST--VPILVIANKQDVP 169
+ +VFVVDSA + A L ++L D +PIL+ NKQD+
Sbjct: 62 DKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLF 121
Query: 170 GALSAEEVGVAL 181
A A+++ L
Sbjct: 122 TAKPAKKIKELL 133
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQE 110
Q ++I GL +SGK++L +++G + + +P+ + + + +TL + G
Sbjct: 3 QPAVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTL--IDFPGHV 60
Query: 111 NVRRFWNTYFEDTDL---LVFVVDS-ADPSKLPVAAMELKNLLGDQRLS--TVPILVIAN 164
+R+ +D+ +VFVVDS A P ++ A L +L L + IL+ N
Sbjct: 61 KLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACN 120
Query: 165 KQDVPGALSAEEVGVALD 182
KQ+ A +++ AL+
Sbjct: 121 KQESFTARPPKKIKQALE 138
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-05
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 54 KILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQE 110
K+++LG GKS+L+ + + +T L H + E N + G TL I++ GQE
Sbjct: 7 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG-VEFLNKDLEVDGHFVTLQIWDTAGQE 65
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQD 167
R ++ +D LL F VD + + L E + + P +++ NK D
Sbjct: 66 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 125
Query: 168 VPG-ALSAEEV 177
+P +S EE
Sbjct: 126 IPERQVSTEEA 136
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 6e-05
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 48/144 (33%)
Query: 57 ILGLDNSGKSTLIKQISSGN--------TSLSHNL---KPTEGFNITI-----------L 94
++GL N+GKSTL+ IS+ T+L NL + +G + I
Sbjct: 5 LVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE 64
Query: 95 QKGEYTLNIFELGGQENVRRFWNTYF----EDTDLLVFVVDSADPSKLPVAAME-LKNLL 149
KG LG + F E T +L+ V+D + PV E ++N L
Sbjct: 65 GKG--------LGHR----------FLRHIERTRVLLHVIDLSGEDD-PVEDYETIRNEL 105
Query: 150 G--DQRLSTVPILVIANKQDVPGA 171
+ L+ P +V+ NK D+ A
Sbjct: 106 EAYNPGLAEKPRIVVLNKIDLLDA 129
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-05
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI----LQKGEYTLNIFELGGQ 109
K++ +G GKS +IK+ G + PT G + + ++ E +N F+L G
Sbjct: 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYL--PTIGIDYGVKKVSVRNKEVRVNFFDLSGH 59
Query: 110 ENVRRFWNTYFEDTD--LLVFVVDSADP-SKLPVAAMELKNLLGDQR-LSTVPILVIANK 165
N +++DT LLV+ V L E+K G + + ++V ANK
Sbjct: 60 PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119
Query: 166 QDVPGALSAEE 176
D+ + E
Sbjct: 120 IDLTKHRAVSE 130
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 9e-05
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 25/127 (19%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHN-----LKPTEGFNITILQKGEYTLNIFELGG 108
++ ++G N GKSTLI ++ ++ + P G + + + G
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVLG-----LGRQIILVDTPG 55
Query: 109 ----------QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP 158
E RF + DL++ VVD+++ E+ L +L P
Sbjct: 56 LIEGASEGKGVEGFNRFLEAI-READLILLVVDASEGLTE--DDEEILEELE--KLPKKP 110
Query: 159 ILVIANK 165
I+++ NK
Sbjct: 111 IILVLNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPV--- 140
T G T +F++GGQ + R+ W FED ++FVV ++ ++
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 141 ------AAMEL-KNLLGDQRLSTVPILVIANKQDV 168
++ L + + PI++ NK+D+
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 18/158 (11%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQ 109
KIL++G GKS+L+ + + + +L T G F + + L I++ GQ
Sbjct: 2 KILLIGDSGVGKSSLLLRFTDD--TFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQ 59
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPS---KLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
E R ++Y+ ++ V D L EL +++ NK
Sbjct: 60 ERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTY---STNPDAVKMLVGNKI 116
Query: 167 DVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204
D E G +R+H + I T A + +
Sbjct: 117 DKENREVTREEGQKF------ARKHNMLFIETSAKTRI 148
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 9e-04
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 56/154 (36%)
Query: 54 KIL----ILGLDNSGKSTLIKQISSGN--------TSLSHNL---KPTEGFNITI----- 93
K+L ++G N GKSTL+ +S+ T+L NL + +G + +
Sbjct: 156 KLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPG 215
Query: 94 ------LQKGEYTLNIFELGGQENVRRFWNTYF----EDTDLLVFVVD-SADPSKLPVAA 142
G LG Q F E T ++V V+D S + P+
Sbjct: 216 LIEGASEGVG--------LGHQ----------FLRHIERTRVIVHVIDMSGSEGRDPIED 257
Query: 143 M-----ELKNLLGDQRLSTVPILVIANKQDVPGA 171
ELK + RL P +V+ANK D+P A
Sbjct: 258 YEKINKELKLY--NPRLLERPQIVVANKMDLPEA 289
|
Length = 424 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.002
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF-----NITILQKGEYTLNIFELGG 108
K++++G GKS+L+ + + + PT G I + K L I++ G
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEY--IPTIGVDFYTKTIEVDGK-TVKLQIWDTAG 57
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGD---QRLSTVPILVIA 163
QE R Y+ LLV+ + S D + +K L + VPI+++
Sbjct: 58 QERFRALRPLYYRGAQGFLLVYDITSRDSFE------NVKKWLEEILRHADENVPIVLVG 111
Query: 164 NKQDV 168
NK D+
Sbjct: 112 NKCDL 116
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 54 KILILGLDNSGKSTLIKQ----ISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109
K++++G GK++L KQ G+ S +H + + + I ++ + LN+++ GGQ
Sbjct: 3 KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGIN-VQDWKIPAPERKKIRLNVWDFGGQ 61
Query: 110 E 110
E
Sbjct: 62 E 62
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.003
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 54 KILILGLDNS-GKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGG 108
KI+++G D+ GK++L+ + S N K T G F ++ L I++ G
Sbjct: 2 KIVLIG-DSGVGKTSLLLRFVDN--KFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAG 58
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
QE R ++Y+ +LV+ V + + + + N L + +PI+++ NK
Sbjct: 59 QERFRSITSSYYRGAHGAILVYDVTNRESFE---NLDKWLNELKEYAPPNIPIILVGNKS 115
Query: 167 D 167
D
Sbjct: 116 D 116
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.003
Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 60/181 (33%)
Query: 32 RQSTPEDEGFEEVSKVDDIFQRKIL----ILGLDNSGKSTLIKQISSGN--------TSL 79
R +TP + G E + + K+L ++GL N+GKSTLI +S+ T+L
Sbjct: 137 RFATPGEPG--EERWL--RLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTL 192
Query: 80 SHNL---KPTEGFNITI-----------LQKGEYTLNIFELGGQENVRRFWNTYF----E 121
NL + +G + I G LG + F E
Sbjct: 193 VPNLGVVRVDDGRSFVIADIPGLIEGASEGAG--------LGHR----------FLKHIE 234
Query: 122 DTDLLVFVVDSADPSKL-PVAAM-----ELKNLLGDQRLSTVPILVIANKQDVPGALSAE 175
T +L+ ++D + P+ ELK L+ P +V+ NK D+ E
Sbjct: 235 RTRVLLHLIDISPEDGSDPIEDYEIIRNELK--KYSPELAEKPRIVVLNKIDLLDEEELE 292
Query: 176 E 176
E
Sbjct: 293 E 293
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.004
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 20/125 (16%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSL-SHNLKP-TEGFNIT-ILQKGEY------TLNIFE 105
+ I+G N GKSTL+ + S+ S KP T I I+ T I +
Sbjct: 9 VAIIGRPNVGKSTLLNALVGQKISIVSP--KPQTTRNRIRGIVTTDNAQIIFVDTPGIHK 66
Query: 106 ---LGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVI 162
G+ + + +D DL++FVVD+ + P L+ L ++ T ILV+
Sbjct: 67 PKHALGELMNKAARSAL-KDVDLILFVVDADEGWG-PGDEFILEQL---KKTKTPVILVV 121
Query: 163 ANKQD 167
NK D
Sbjct: 122 -NKID 125
|
Length = 298 |
| >gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 31/183 (16%)
Query: 52 QRKIL---ILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI---TILQKG-EYTLNIF 104
QR + +LG SGKS L++ G + + PT T+ G E L +
Sbjct: 1 QRNVFLCFVLGAKGSGKSALLQAFL-GRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILR 59
Query: 105 ELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIAN 164
E+G E + D+ V DS+DP+ A E+ L +P L +A
Sbjct: 60 EVGEDEEAILLNDAELAACDVACLVYDSSDPNSFSYCA-EVYKKYFM--LGEIPCLFVAA 116
Query: 165 KQDVPGA-----LSAEEVGVALDLSSISSRQHRIK---LIATQAPSNLHHLHVSVVEAEQ 216
K D+ + +E R+ + +++ + + L + A
Sbjct: 117 KADLDEQQQRAEVQPDEF----------CRKLGLPPPLHFSSRLGDSSNELFTKLATA-- 164
Query: 217 AMY 219
A Y
Sbjct: 165 AQY 167
|
Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 224 | |||
| KOG0084|consensus | 205 | 100.0 | ||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.97 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.97 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.97 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.97 | |
| KOG0092|consensus | 200 | 99.97 | ||
| KOG0078|consensus | 207 | 99.97 | ||
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.97 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.97 | |
| KOG0098|consensus | 216 | 99.97 | ||
| KOG0094|consensus | 221 | 99.97 | ||
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.97 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.97 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.97 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.96 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.96 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.96 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.96 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.96 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.96 | |
| KOG0394|consensus | 210 | 99.96 | ||
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.96 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.96 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.96 | |
| KOG0080|consensus | 209 | 99.96 | ||
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.96 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.96 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.96 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.96 | |
| KOG0073|consensus | 185 | 99.96 | ||
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.96 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.96 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.96 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.96 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.96 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.96 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.96 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.96 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.96 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.96 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.96 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.96 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.95 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.95 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.95 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.95 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.95 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.95 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.95 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.95 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.95 | |
| KOG0079|consensus | 198 | 99.95 | ||
| KOG0087|consensus | 222 | 99.95 | ||
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.95 | |
| KOG0093|consensus | 193 | 99.95 | ||
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.95 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.95 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.95 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.95 | |
| KOG0086|consensus | 214 | 99.95 | ||
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.95 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.95 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.95 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.95 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.95 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.95 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.95 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.95 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.95 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.95 | |
| KOG0071|consensus | 180 | 99.95 | ||
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.95 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.95 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.95 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.95 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.95 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.95 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.95 | |
| KOG0070|consensus | 181 | 99.95 | ||
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.95 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.95 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.95 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.95 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.95 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.94 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.94 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.94 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.94 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.94 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.94 | |
| KOG0095|consensus | 213 | 99.94 | ||
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.94 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.94 | |
| KOG0091|consensus | 213 | 99.94 | ||
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.94 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.94 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.94 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.94 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.94 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.94 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.94 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.94 | |
| KOG0075|consensus | 186 | 99.94 | ||
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.94 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.93 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.93 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.93 | |
| KOG0081|consensus | 219 | 99.93 | ||
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.93 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.93 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.93 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.93 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.93 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.93 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.93 | |
| KOG0097|consensus | 215 | 99.93 | ||
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.93 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.93 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.92 | |
| KOG0395|consensus | 196 | 99.92 | ||
| KOG0088|consensus | 218 | 99.92 | ||
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.92 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.92 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.91 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.91 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.91 | |
| KOG0393|consensus | 198 | 99.91 | ||
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.91 | |
| KOG0074|consensus | 185 | 99.91 | ||
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.9 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.9 | |
| KOG0076|consensus | 197 | 99.9 | ||
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.9 | |
| KOG0083|consensus | 192 | 99.9 | ||
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.9 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.89 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.89 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.89 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.89 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.89 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.88 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.88 | |
| KOG0072|consensus | 182 | 99.88 | ||
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.88 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.87 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.87 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.87 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.87 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.87 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.86 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.86 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.86 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.86 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.86 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.86 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.86 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.85 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.85 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.85 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.85 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.85 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.85 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.85 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.85 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.84 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.84 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.84 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.84 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.84 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.84 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.83 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.83 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.83 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.83 | |
| KOG4252|consensus | 246 | 99.83 | ||
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.83 | |
| PTZ00099 | 176 | rab6; Provisional | 99.83 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.82 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.82 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.82 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.82 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.82 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.82 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.82 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.82 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.81 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.81 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.81 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.81 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.81 | |
| KOG1673|consensus | 205 | 99.81 | ||
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.8 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.8 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.8 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.8 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.79 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.79 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.79 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.79 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.78 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.78 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.78 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.78 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.77 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.77 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.77 | |
| KOG1489|consensus | 366 | 99.77 | ||
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.77 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.76 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.75 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.75 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.75 | |
| KOG0096|consensus | 216 | 99.75 | ||
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.75 | |
| KOG0090|consensus | 238 | 99.74 | ||
| KOG3883|consensus | 198 | 99.74 | ||
| KOG1707|consensus | 625 | 99.73 | ||
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.73 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.73 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.72 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.72 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.72 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.72 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.72 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.71 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.71 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.71 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.7 | |
| KOG0077|consensus | 193 | 99.7 | ||
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.7 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.7 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.69 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.69 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.69 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.69 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.69 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.69 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.69 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.68 | |
| KOG4423|consensus | 229 | 99.66 | ||
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.66 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.66 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.65 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.65 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.64 | |
| KOG1145|consensus | 683 | 99.64 | ||
| KOG1423|consensus | 379 | 99.63 | ||
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.63 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.63 | |
| KOG0462|consensus | 650 | 99.63 | ||
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.63 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.62 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.62 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.61 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.61 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.6 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.58 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.57 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.55 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.55 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.55 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.55 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.55 | |
| KOG1191|consensus | 531 | 99.55 | ||
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.55 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.54 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.51 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.5 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.5 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.5 | |
| KOG0082|consensus | 354 | 99.49 | ||
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.49 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.47 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.46 | |
| KOG1490|consensus | 620 | 99.44 | ||
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.43 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.41 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.39 | |
| KOG1144|consensus | 1064 | 99.37 | ||
| PRK13768 | 253 | GTPase; Provisional | 99.36 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.35 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.35 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.34 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.34 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.33 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.33 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.33 | |
| KOG0410|consensus | 410 | 99.32 | ||
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.32 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.3 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.29 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.27 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.27 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.27 | |
| KOG0458|consensus | 603 | 99.27 | ||
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.26 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.26 | |
| KOG1532|consensus | 366 | 99.23 | ||
| KOG0461|consensus | 522 | 99.23 | ||
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.18 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.18 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.18 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.17 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.16 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.14 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.13 | |
| KOG0447|consensus | 980 | 99.13 | ||
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.13 | |
| KOG3886|consensus | 295 | 99.1 | ||
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.09 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.09 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.06 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.05 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.05 | |
| KOG0099|consensus | 379 | 99.02 | ||
| KOG0460|consensus | 449 | 99.01 | ||
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.0 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.99 | |
| KOG0085|consensus | 359 | 98.98 | ||
| KOG0468|consensus | 971 | 98.96 | ||
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.95 | |
| KOG1707|consensus | 625 | 98.93 | ||
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.92 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.91 | |
| KOG3905|consensus | 473 | 98.83 | ||
| KOG1491|consensus | 391 | 98.82 | ||
| KOG1954|consensus | 532 | 98.78 | ||
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.77 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.76 | |
| KOG1486|consensus | 364 | 98.76 | ||
| KOG0705|consensus | 749 | 98.74 | ||
| KOG0466|consensus | 466 | 98.71 | ||
| KOG2486|consensus | 320 | 98.66 | ||
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.64 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.62 | |
| KOG3887|consensus | 347 | 98.62 | ||
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.6 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.6 | |
| KOG0448|consensus | 749 | 98.58 | ||
| KOG0467|consensus | 887 | 98.56 | ||
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.54 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.54 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.51 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.51 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.5 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.49 | |
| KOG0463|consensus | 641 | 98.48 | ||
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.48 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.47 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.47 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.45 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.44 | |
| KOG2655|consensus | 366 | 98.39 | ||
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.38 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.38 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.37 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.34 | |
| KOG1143|consensus | 591 | 98.34 | ||
| KOG1487|consensus | 358 | 98.33 | ||
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.31 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.31 | |
| KOG1547|consensus | 336 | 98.29 | ||
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.29 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.28 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.28 | |
| KOG0459|consensus | 501 | 98.26 | ||
| KOG0464|consensus | 753 | 98.26 | ||
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.25 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.22 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.22 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.13 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.11 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.1 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.1 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.08 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.07 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.05 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.05 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 97.99 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.99 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.99 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.97 | |
| KOG0465|consensus | 721 | 97.94 | ||
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.92 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.88 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.88 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.81 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.78 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.75 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.75 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.73 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.72 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.7 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.7 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.67 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.66 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.65 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.65 | |
| KOG3859|consensus | 406 | 97.63 | ||
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.63 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.59 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.58 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.57 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.47 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.47 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.46 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.45 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.42 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.38 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.38 | |
| KOG0469|consensus | 842 | 97.36 | ||
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.34 | |
| KOG1424|consensus | 562 | 97.33 | ||
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.33 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.3 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.29 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.29 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.23 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.21 | |
| KOG1534|consensus | 273 | 97.17 | ||
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.12 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.11 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.11 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.06 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.04 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.01 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.0 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 96.99 | |
| KOG2484|consensus | 435 | 96.98 | ||
| PF05729 | 166 | NACHT: NACHT domain | 96.96 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 96.96 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 96.93 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 96.88 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 96.86 | |
| KOG2485|consensus | 335 | 96.83 | ||
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 96.78 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 96.77 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 96.75 | |
| KOG0780|consensus | 483 | 96.75 | ||
| KOG0446|consensus | 657 | 96.73 | ||
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 96.72 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 96.72 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 96.7 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 96.69 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 96.67 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 96.66 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 96.65 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.65 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 96.65 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 96.64 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.62 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 96.62 | |
| KOG1424|consensus | 562 | 96.61 | ||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 96.6 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 96.59 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.59 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 96.59 | |
| PRK06217 | 183 | hypothetical protein; Validated | 96.57 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 96.56 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 96.54 | |
| PRK03839 | 180 | putative kinase; Provisional | 96.54 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 96.52 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 96.51 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 96.5 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 96.49 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 96.49 | |
| PRK08727 | 233 | hypothetical protein; Validated | 96.46 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.45 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 96.44 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 96.44 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 96.43 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 96.42 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.41 | |
| KOG4273|consensus | 418 | 96.41 | ||
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 96.4 | |
| KOG2423|consensus | 572 | 96.39 | ||
| PRK14532 | 188 | adenylate kinase; Provisional | 96.39 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 96.38 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 96.37 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.37 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 96.37 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 96.37 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 96.35 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 96.32 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 96.32 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 96.31 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 96.3 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 96.3 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 96.3 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 96.29 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 96.28 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 96.28 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 96.27 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 96.27 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport | 96.27 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 96.26 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 96.26 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 96.26 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 96.26 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 96.26 |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=201.12 Aligned_cols=165 Identities=20% Similarity=0.271 Sum_probs=136.2
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEe--CCeEEEEEEcCCchhHHHHHHhhccC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQK--GEYTLNIFELGGQENVRRFWNTYFED 122 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ 122 (224)
.+.++.+||+++|+.|+|||+|+.|+.++.|++ .+..|+|..... +.. +..++.+|||+||++++++...++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e--~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTE--SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcch--hhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 345789999999999999999999999999999 888888866554 444 34899999999999999999999999
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCccccee-EEEee
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIK-LIATQ 199 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~S 199 (224)
+|+||+|||+++.+||.++..|+.++..... .++|.++|+||+|+.+. ...++.+........ + |+++|
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~-------~~f~ETS 153 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGI-------PIFLETS 153 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHHhcCC-------cceeecc
Confidence 9999999999999999999999999988754 56899999999999875 333333333322111 5 99999
Q ss_pred cCCCCccccchHHHHHHHHHHh
Q psy12173 200 APSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~~~ 221 (224)
|+.+.|+++.|...+.+...+.
T Consensus 154 AK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 154 AKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred cCCccCHHHHHHHHHHHHHHhc
Confidence 9999999888887776665543
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=196.52 Aligned_cols=161 Identities=32% Similarity=0.539 Sum_probs=136.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..+||+++|+.+||||||++++..+.+.. +.||.+++...+..++..+.+||+||+++++..+..+++++|++|+|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~---~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc---ccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 45799999999999999999999877643 468888888778888899999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.+...++..++......+.|++|++||.|+.+....+++.+.+++.....+.+ .+++|||++|+|+++.|
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~--~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW--YIQSTCATSGEGLYEGL 170 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCce--EEEeccCCCCCCHHHHH
Confidence 9999999999988888887654446799999999999988888888888887765544555 78899999999996665
Q ss_pred HHHHHH
Q psy12173 211 VVEAEQ 216 (224)
Q Consensus 211 ~~~i~~ 216 (224)
...+.+
T Consensus 171 ~~l~~~ 176 (181)
T PLN00223 171 DWLSNN 176 (181)
T ss_pred HHHHHH
Confidence 544433
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=193.87 Aligned_cols=156 Identities=33% Similarity=0.572 Sum_probs=133.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++++|||||++++..+.+. .+.||++.....+...+..+.+|||||+++++..+..+++++|++|+|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~---~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc---cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4689999999999999999999987764 3467888777777778899999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|++++.++.+..+++..+.......++|+++|+||+|+.+....+++.+.++......+.+ +++++||++|.|+++.|
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNW--YVQPSCATSGDGLYEGL 162 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcE--EEEEeeCCCCCChHHHH
Confidence 9999999999999998888754446789999999999987667788888877655444445 89999999999996655
Q ss_pred H
Q psy12173 211 V 211 (224)
Q Consensus 211 ~ 211 (224)
.
T Consensus 163 ~ 163 (168)
T cd04149 163 T 163 (168)
T ss_pred H
Confidence 4
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=193.75 Aligned_cols=161 Identities=33% Similarity=0.544 Sum_probs=135.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..+||+++|++|+|||||++++..+.+. .+.||+++.......++..+.+||+||+++++..+..+++++|++|+|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV---TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC---CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 4589999999999999999999877763 3568888877777778899999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++++..+++..+.......+.|+++|+||.|+.+....+++.+.++......+.+ .++++||++|.|+++.|
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNW--YIQPTCATSGDGLYEGL 166 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcE--EEEEeeCCCCCCHHHHH
Confidence 9999999999999999887754446789999999999987777778888777665555555 78899999999995555
Q ss_pred HHHHHHH
Q psy12173 211 VVEAEQA 217 (224)
Q Consensus 211 ~~~i~~~ 217 (224)
. .+.+.
T Consensus 167 ~-~l~~~ 172 (175)
T smart00177 167 T-WLSNN 172 (175)
T ss_pred H-HHHHH
Confidence 4 44443
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=190.84 Aligned_cols=154 Identities=36% Similarity=0.583 Sum_probs=129.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
+||+++|++++|||||++++..+.+.. +.||++++...+...+..+.+||+||++++...+..+++++|++++|+|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~---~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 489999999999999999998877653 56888887777777889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
++++++++..+++..+.......+.|+++++||.|+.+....+++.+.+.......+.+ .++++||++|+|+++.|.
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNW--YIQATCATSGDGLYEGLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCE--EEEEeeCCCCCCHHHHHH
Confidence 99999999999898887654445789999999999977656666666665444434444 789999999999965543
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=192.46 Aligned_cols=158 Identities=21% Similarity=0.293 Sum_probs=131.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
....|++++|+.++|||||+-|+..+.|.+ ...+|+| |-...+...+ +++.+|||+|+++|.++-..+++++++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e--~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~A 80 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHE--NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANA 80 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccc--ccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcE
Confidence 356899999999999999999999999998 6788888 4455555544 899999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC--CCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|||+++.+||.....|+.++..+.. ++.-+.+|+||+|+.+ ....+|.....+.... .|+++|||+|
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gl-------l~~ETSAKTg 152 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGL-------LFFETSAKTG 152 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCC-------EEEEEecccc
Confidence 9999999999999999999999988754 5566778999999987 3555555555543322 8999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+++.|...+.+.
T Consensus 153 ~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 153 ENVNEIFQAIAEKL 166 (200)
T ss_pred cCHHHHHHHHHHhc
Confidence 99977776655544
|
|
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=192.66 Aligned_cols=164 Identities=21% Similarity=0.280 Sum_probs=135.8
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeCC--eEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKGE--YTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
..+..+||+++|++++|||+++.++..+.|.. .+..|++..+. .+..++ +.+++|||.||++++.+...++++|
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~--~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNT--SFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcC--CccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 44678999999999999999999999999988 77778775544 455544 7899999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+++++|||+++..||+++..|+..+-.+.. .++|.++|+||+|+.+. ...+..++... ..++.|+|+||+
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~-------e~G~~F~EtSAk 157 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERGEALAR-------EYGIKFFETSAK 157 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHHHHHHH-------HhCCeEEEcccc
Confidence 999999999999999999998888766643 58999999999999874 22332222221 112399999999
Q ss_pred CCCccccchHHHHHHHHHHh
Q psy12173 202 SNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~~ 221 (224)
+|.||++.|..++++.+.++
T Consensus 158 ~~~NI~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDILQKL 177 (207)
T ss_pred CCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999888654
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=192.33 Aligned_cols=162 Identities=31% Similarity=0.526 Sum_probs=135.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.+||+++|++++|||||++++..+.+.. +.||.+++...+...+..+.+|||||+++++..+..+++.+|++|+|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~---~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D 93 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT---TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVD 93 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 5799999999999999999998877653 4578888777777888999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
+++++++.....++..+.......++|+++++||.|+.+....+++...++......+.+ .++++||++|.|+++.|.
T Consensus 94 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~--~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 94 SNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNW--YIQGCCATTAQGLYEGLD 171 (182)
T ss_pred CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcE--EEEeeeCCCCCCHHHHHH
Confidence 999999999988888887654445789999999999987767777777777654444444 788999999999966666
Q ss_pred HHHHHHH
Q psy12173 212 VEAEQAM 218 (224)
Q Consensus 212 ~~i~~~l 218 (224)
..+....
T Consensus 172 ~l~~~i~ 178 (182)
T PTZ00133 172 WLSANIK 178 (182)
T ss_pred HHHHHHH
Confidence 5444433
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=192.15 Aligned_cols=159 Identities=14% Similarity=0.220 Sum_probs=127.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+||+++|+.|+|||||+.++..+.|.. .+.++.+. ....+..++ ..+.+|||+|++++..++..+++++|+
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTES--PYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 356899999999999999999999988876 45555553 334455554 788999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|||++++++++++..|+..+.... ++.|++||+||.|+.+. ...++..+..+. .. ++|++|||++|
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~-----~~--~~~~e~SAk~g 152 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAER-----NG--MTFFEVSPLCN 152 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHH-----cC--CEEEEecCCCC
Confidence 999999999999999999999986543 58999999999999753 344444444421 22 38999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.||++.|...+..++.
T Consensus 153 ~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 153 FNITESFTELARIVLM 168 (189)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9997777766665554
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=185.48 Aligned_cols=162 Identities=19% Similarity=0.231 Sum_probs=134.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
.+.+|+.++|+.|+|||+|+.|++++.|.+ ....|+|.. ...+.+ +.+++++|||+|++++++....+++.+.+
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~--~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQP--VHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccc--cccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 467899999999999999999999999999 555676643 444444 45899999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|||+++.++|..+..|+.++.++.. ++.-+++++||+||... .+.+|.+...+... -.|.++||+++
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg-------LifmETSakt~ 153 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEARREVSKEEGEAFAREHG-------LIFMETSAKTA 153 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhccccccHHHHHHHHHHcC-------ceeehhhhhhh
Confidence 9999999999999999999999998753 68899999999999765 33444433332211 17889999999
Q ss_pred CccccchHHHHHHHHHHh
Q psy12173 204 LHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~~ 221 (224)
+|++|.|.+...+++.+.
T Consensus 154 ~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 154 ENVEEAFINTAKEIYRKI 171 (216)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 999999988887777654
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=186.13 Aligned_cols=160 Identities=18% Similarity=0.266 Sum_probs=129.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..|++++|+.++|||||+.|+..+.|.. .|.+|+|.++. .+...+ +.+.+|||+|||+|+.+...+++++.++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~--~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcc--cccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 45899999999999999999999999999 88889885544 455544 7899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|||+++..||++..+|+..+..+....++-+++|+||.||.++......+-. .+.+..++.|+++||+.|+||
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~-----~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE-----RKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH-----HHHHHhCcEEEEecccCCCCH
Confidence 999999999999999999999999977556889999999999887222111111 111333448999999999999
Q ss_pred ccchHHHHHHHH
Q psy12173 207 LHVSVVEAEQAM 218 (224)
Q Consensus 207 ~~~~~~~i~~~l 218 (224)
. .++.-|..++
T Consensus 174 k-~lFrrIaa~l 184 (221)
T KOG0094|consen 174 K-QLFRRIAAAL 184 (221)
T ss_pred H-HHHHHHHHhc
Confidence 5 4444444443
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=188.76 Aligned_cols=156 Identities=43% Similarity=0.698 Sum_probs=130.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.+..+ . .+.+|.++....+..++..+.+|||||++.++..+..+++.+|++++|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~--~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-D--TISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-C--CcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 457999999999999999999998754 3 4667888888788888899999999999999988888999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.+...++..++......+.|+++++||+|+.+....+++.+.++........+ +++++||++|.|+++.|
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHW--RIQPCSAVTGEGLLQGI 167 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCce--EEEeccCCCCcCHHHHH
Confidence 9999999999888888887654446899999999999987766777777776543222333 89999999999996554
Q ss_pred H
Q psy12173 211 V 211 (224)
Q Consensus 211 ~ 211 (224)
.
T Consensus 168 ~ 168 (173)
T cd04154 168 D 168 (173)
T ss_pred H
Confidence 4
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-29 Score=191.52 Aligned_cols=158 Identities=16% Similarity=0.256 Sum_probs=124.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.|+++|+.|+|||||++++..+.|.. .+.+|++ +....+..++ ..+.+|||+|+++++.++..+++++|++|+|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence 68999999999999999999999887 6667765 4444566654 7889999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
||++++++++++..|+..+... ...+.|+++|+||+|+.+. ...++..+..+.. .. +.|++|||++|.|++
T Consensus 80 fDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~----~~--~~~~etSAktg~gV~ 152 (202)
T cd04120 80 YDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQI----TG--MRFCEASAKDNFNVD 152 (202)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhc----CC--CEEEEecCCCCCCHH
Confidence 9999999999999888766443 3357999999999999643 2333332222110 12 289999999999998
Q ss_pred cchHHHHHHHHHH
Q psy12173 208 HVSVVEAEQAMYA 220 (224)
Q Consensus 208 ~~~~~~i~~~l~~ 220 (224)
+.|...+...+.+
T Consensus 153 e~F~~l~~~~~~~ 165 (202)
T cd04120 153 EIFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHHHh
Confidence 8887776665543
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=186.03 Aligned_cols=161 Identities=31% Similarity=0.522 Sum_probs=131.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
||+++|++++|||||++++.+..+. .+.||.+.....+..++..+.+|||||+++++..+..+++.+|++++|+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~---~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM---QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC---CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 6899999999999999999998654 3567888877777888899999999999999998888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccc-cCcccceeEEEeecCCCCccccchHH
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSI-SSRQHRIKLIATQAPSNLHHLHVSVV 212 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gv~~~~~~ 212 (224)
+++++.+...|+..+.......+.|+++++||.|+.+....+++.+.++.... ..+.+ .+++|||++|.|+++.|.
T Consensus 78 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~g~gv~~~f~- 154 (169)
T cd04158 78 HRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSW--YIQGCDARSGMGLYEGLD- 154 (169)
T ss_pred cHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcE--EEEeCcCCCCCCHHHHHH-
Confidence 99999999999999987644456899999999999877677777776654332 12233 789999999999966555
Q ss_pred HHHHHHHH
Q psy12173 213 EAEQAMYA 220 (224)
Q Consensus 213 ~i~~~l~~ 220 (224)
.+.+.+..
T Consensus 155 ~l~~~~~~ 162 (169)
T cd04158 155 WLSRQLVA 162 (169)
T ss_pred HHHHHHhh
Confidence 44444443
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=190.87 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=124.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...+||+++|++++|||||++++..+.|.. .+.||++..+. .+..+ ...+.+|||+|++++..++..+++++|++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~--~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCC--ccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 356799999999999999999999999887 77888774433 34443 37899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCccc
Q psy12173 127 VFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSRQH 191 (224)
Q Consensus 127 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 191 (224)
|+|||++++++|+++ ..|+..+.... ++.|+++|+||+|+.+. ...++..+..+ ..
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~-------~~ 151 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK-------QI 151 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH-------Hc
Confidence 999999999999997 67777776543 57899999999998642 22333333221 12
Q ss_pred c-eeEEEeecCCCCc-cccchHHHHHHHH
Q psy12173 192 R-IKLIATQAPSNLH-HLHVSVVEAEQAM 218 (224)
Q Consensus 192 ~-~~~~~~Sa~~~~g-v~~~~~~~i~~~l 218 (224)
+ ++|++|||++|.| |++.|..++..++
T Consensus 152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 152 GAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 2 2899999999998 9887777766544
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=185.17 Aligned_cols=159 Identities=17% Similarity=0.141 Sum_probs=125.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.+||+++|++|+|||||++++..+.|+. .+.+|++..+. .+..++ ..+.+|||||+++++.++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 3699999999999999999999999887 67778774443 344544 679999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+..+ .. +++|++|||++|.|+
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~-----~~--~~~~~e~Sa~~~~~v 152 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR-----EF--NCPFFETSAALRHYI 152 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH-----Hh--CCEEEEEecCCCCCH
Confidence 9999999999999887766655433357999999999998654 33333332221 12 249999999999999
Q ss_pred ccchHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMY 219 (224)
Q Consensus 207 ~~~~~~~i~~~l~ 219 (224)
++.|...+.+.+.
T Consensus 153 ~~~f~~l~~~~~~ 165 (172)
T cd04141 153 DDAFHGLVREIRR 165 (172)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766554
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=186.86 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=121.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++++|||||+.++..+.|.. .+.||++..+. .+..+ ..++.+|||+|+++++.++..+++++|++|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~--~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC--CCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 589999999999999999999999987 77888864433 23443 37899999999999999998899999999999
Q ss_pred EECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC------------CCHHHHHhhcCcccccCcccce-eE
Q psy12173 130 VDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA------------LSAEEVGVALDLSSISSRQHRI-KL 195 (224)
Q Consensus 130 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~ 195 (224)
||+++++||+++ ..|+..+.... .+.|+++|+||+|+.+. ...++..+..+ ..++ .|
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~-------~~~~~~~ 150 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK-------QIGAAAY 150 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH-------HcCCCEE
Confidence 999999999998 57888776543 47999999999999653 22222222221 1122 69
Q ss_pred EEeecCCCCccccchHHHHHHHHHHh
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
++|||++|.||++.|...+. .+.++
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~-~~~~~ 175 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIK-VVLQP 175 (176)
T ss_pred EECCCCcccCHHHHHHHHHH-HHhcC
Confidence 99999999999666665554 44443
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=189.96 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=121.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..+||+++|+.++|||||+.++..+.|.. .+.||.+..+. .+..+ ...+.+|||+|+++++.++..+++++|++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 45799999999999999999999999887 77888875443 23333 378999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCccc--------ccCcccceeEEE
Q psy12173 128 FVVDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSS--------ISSRQHRIKLIA 197 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~ 197 (224)
+|||+++++||+++.. |+..+.... .+.|+++|+||.|+.+... .+++.+ ..... +..+...++|++
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~-~~~~~v~~~~~~~~a~~~~~~~~~e 156 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKE-QGQAPITPQQGGALAKQIHAVKYLE 156 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhh-ccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999975 555554432 5799999999999975422 111111 11000 000111138999
Q ss_pred eecCCCCccccchHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l 218 (224)
|||++|.|+++.|...+..++
T Consensus 157 ~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 157 CSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred eCCCCCCCHHHHHHHHHHHHh
Confidence 999999999777776665544
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=182.53 Aligned_cols=154 Identities=36% Similarity=0.588 Sum_probs=126.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNT-SLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
+|+++|++++|||||++++.+..+ .. .+.||.++....+...+..+.+|||||++++...+..+++++|++++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ--IIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc--eecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 589999999999999999998763 44 567888877777777889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 133 ADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
+++.++.....++..+..... ..++|+++|+||+|+.+....+++.+.++........+ +++++||++|.|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~--~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 79 SDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPW--HIFASNALTGEGLDEGV 156 (162)
T ss_pred CcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceE--EEEEeeCCCCCchHHHH
Confidence 999999888888887766432 24799999999999987666666666665543322333 79999999999995555
Q ss_pred H
Q psy12173 211 V 211 (224)
Q Consensus 211 ~ 211 (224)
.
T Consensus 157 ~ 157 (162)
T cd04157 157 Q 157 (162)
T ss_pred H
Confidence 4
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=183.78 Aligned_cols=157 Identities=20% Similarity=0.237 Sum_probs=125.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++..+.|.. .+.+|.+.... .+..+ ...+.+|||||++++...+..+++++|++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3799999999999999999999998877 66677765443 34444 367899999999999999988999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... ...++..+..+. . ++++++|||++|.|
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~e~Sa~~~~~ 151 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADLEAQRDVTYEEAKQFADE-----N--GLLFLECSAKTGEN 151 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCcCHHHHHHHHHH-----c--CCEEEEEECCCCCC
Confidence 99999999999999999888765432 56899999999999764 333444433321 1 23899999999999
Q ss_pred cccchHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAM 218 (224)
Q Consensus 206 v~~~~~~~i~~~l 218 (224)
+++.|...+.+.+
T Consensus 152 i~e~f~~l~~~~~ 164 (166)
T cd04122 152 VEDAFLETAKKIY 164 (166)
T ss_pred HHHHHHHHHHHHh
Confidence 9777776666554
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=184.21 Aligned_cols=163 Identities=25% Similarity=0.289 Sum_probs=136.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+||.++|++|+|||||++++..++|.. .+..|++ |-.+.+.+++ +.+.+|||+|+++|.++...+++++|.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~--qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQ--QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHH--HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 456899999999999999999999999998 7777777 5556666655 789999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCC---CCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQR---LSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
.++|||+++++||+++..|..+++.+.. +...|+||++||.|+... .+.+...+.+.- ++ +.+|+|+
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s----~g--nipyfEt 158 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKS----KG--NIPYFET 158 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHh----cC--CceeEEe
Confidence 9999999999999999999999998754 345799999999999662 333444444432 12 2399999
Q ss_pred ecCCCCccccchHHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
|||.+.||+++|...+.++|..
T Consensus 159 SAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 159 SAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred cccccccHHHHHHHHHHHHHhc
Confidence 9999999999999998888864
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=183.42 Aligned_cols=154 Identities=36% Similarity=0.618 Sum_probs=130.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
|+++|++|+|||||++++.++.+.. .+.||.++....+...+..+.+||+||+++++..+..+++++|++++|+|.++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~--~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE--SVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc--cccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 7999999999999999999988776 77888888777777788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC-cccceeEEEeecCC------CCccc
Q psy12173 135 PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS-RQHRIKLIATQAPS------NLHHL 207 (224)
Q Consensus 135 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~gv~ 207 (224)
+.++.....|+..+.... .++|+++|+||.|+......+++.+.++...+.. ..+ .+++|||++ ++||+
T Consensus 80 ~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 80 SERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW--ILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred HHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce--EEEEeeecCCCChhHHHHHH
Confidence 999999988888886543 5899999999999988777777776666555432 344 899999998 99997
Q ss_pred cchHHHH
Q psy12173 208 HVSVVEA 214 (224)
Q Consensus 208 ~~~~~~i 214 (224)
+.|...+
T Consensus 156 ~~~~~~~ 162 (164)
T cd04162 156 DLLSQLI 162 (164)
T ss_pred HHHHHHh
Confidence 6665443
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=183.52 Aligned_cols=156 Identities=33% Similarity=0.536 Sum_probs=130.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
..+|+++|++|+|||||++++..+.+.. +.+|.+.+...+.+++..+.+||+||++++...+..+++++|++++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH---TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 4699999999999999999999888664 4678887777888888999999999999999999889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
+++++++.....++..+.......++|+++++||+|+.+....+++.+.+.........+ ++++|||++|.|+++.+.
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~--~~~~~SA~~g~gi~e~~~ 169 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTW--HIQGCCALTGEGLPEGLD 169 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCce--EEEecccCCCCCHHHHHH
Confidence 999999988888888887664446799999999999987666777777665443333344 899999999999955544
Q ss_pred H
Q psy12173 212 V 212 (224)
Q Consensus 212 ~ 212 (224)
.
T Consensus 170 ~ 170 (174)
T cd04153 170 W 170 (174)
T ss_pred H
Confidence 3
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=185.34 Aligned_cols=158 Identities=19% Similarity=0.238 Sum_probs=119.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|+. .+.||++..+. .+..++ ..+.+|||+|++++...+..+++++|++|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~--~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 689999999999999999999999877 77888875444 344544 7888999999999999888899999999999
Q ss_pred EECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccc-----------ccCcccceeEEE
Q psy12173 130 VDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSS-----------ISSRQHRIKLIA 197 (224)
Q Consensus 130 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 197 (224)
||++++++++++.. |+..+.... .+.|+++|+||.|+.+... ..+.+.... .......+.|++
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~---~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e 154 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPS---TIEKLAKNKQKPITPETGEKLARDLKAVKYVE 154 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChh---hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence 99999999999975 555554432 5789999999999865411 111111000 000111138999
Q ss_pred eecCCCCccccchHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~ 217 (224)
|||++|.|+++.|...+..+
T Consensus 155 ~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 155 CSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 99999999977777666543
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=176.99 Aligned_cols=162 Identities=22% Similarity=0.247 Sum_probs=136.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+||+++|+.|+|||||+-++..+.|.. ....|+| |..+.+.++ +.++-+|||+|+++|+.+...+++++.+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~--~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDD--LHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCc--cCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 467999999999999999999999999988 5555565 556667664 4789999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|||++.+++|..+..|+.++-.+..-++...++|+||+|...+ .+.+|-.+.. +.++|-|++|||++.
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfA-------r~h~~LFiE~SAkt~ 159 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFA-------RKHRCLFIECSAKTR 159 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHH-------HhhCcEEEEcchhhh
Confidence 9999999999999999999999988766567888999999998743 3444443333 334458999999999
Q ss_pred CccccchHHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~ 220 (224)
+||...|.+.+.++++-
T Consensus 160 ~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 160 ENVQCCFEELVEKIIET 176 (209)
T ss_pred ccHHHHHHHHHHHHhcC
Confidence 99999999888888763
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=185.76 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=121.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|+. .+.||++..+. .+..+ ...+.+|||+|++.+......+++++|++|+|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPE--TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCC--CcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 689999999999999999999999887 77788764432 34443 37899999999999999888899999999999
Q ss_pred EECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCcccce-
Q psy12173 130 VDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSRQHRI- 193 (224)
Q Consensus 130 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~- 193 (224)
||+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+. ...++..+..+ ..++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~-------~~~~~ 150 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK-------QLGAE 150 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH-------HhCCC
Confidence 999999999996 67777776543 57899999999999642 22222222221 1122
Q ss_pred eEEEeecCCCCc-cccchHHHHHHHH
Q psy12173 194 KLIATQAPSNLH-HLHVSVVEAEQAM 218 (224)
Q Consensus 194 ~~~~~Sa~~~~g-v~~~~~~~i~~~l 218 (224)
+|++|||++|+| +++.|...++..+
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHHHh
Confidence 799999999995 9887877776444
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=182.64 Aligned_cols=155 Identities=17% Similarity=0.260 Sum_probs=121.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.+.. .+.+|.+.......+ ....+.+|||+|++.+...+..++..+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEE
Confidence 489999999999999999999888776 667787766555433 34789999999999988888888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|+|+++++++..+..|+..+.... .++|+++|+||+|+.......+..+..+ ... ++++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~-----~~~--~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHR-----KKN--LQYYEISAKSNYNFEK 149 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHH-----HcC--CEEEEEeCCCCCChHH
Confidence 999999999999998988887764 3899999999999974432222222111 122 3899999999999966
Q ss_pred chHHHHHHHH
Q psy12173 209 VSVVEAEQAM 218 (224)
Q Consensus 209 ~~~~~i~~~l 218 (224)
.|...+.+++
T Consensus 150 ~f~~l~~~~~ 159 (166)
T cd00877 150 PFLWLARKLL 159 (166)
T ss_pred HHHHHHHHHH
Confidence 6665555543
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=182.82 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=125.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC------------CeEEEEEEcCCchhHHHHH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG------------EYTLNIFELGGQENVRRFW 116 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~------------~~~~~l~D~~G~~~~~~~~ 116 (224)
+.+||+++|++|+|||||++++..+.|.. .+.+|.+.... .+.+. ...+.+|||||++++...+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNP--KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 46899999999999999999999999887 66777764333 33332 3789999999999999999
Q ss_pred HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCccccee
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
..+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+. ...++..+..+. .+++
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~ 153 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK-------YGIP 153 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH-------cCCe
Confidence 9999999999999999999999999999888876544457899999999999653 333343333321 1238
Q ss_pred EEEeecCCCCccccchHHHHHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++++||++|.|+++.|...+...+.
T Consensus 154 ~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 154 YFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999996666655554443
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=186.56 Aligned_cols=159 Identities=21% Similarity=0.265 Sum_probs=125.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC---CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG---EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+||+++|++|+|||||++++..+.+.. .+.+|.+..+ ..+..+ ...+.+|||||++++...+..+++++|++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~--~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ--HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEE
Confidence 489999999999999999999998877 6778877443 344444 478999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcC---CCCCCcEEEEEeCCCCC--CCCCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQ---RLSTVPILVIANKQDVP--GALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+|+|++++++++.+..|+..+.... ...++|+++|+||.|+. .....++..+..+... . +.+++|||++
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~--~~~~e~Sak~ 152 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG----F--IGWFETSAKE 152 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC----C--ceEEEEeCCC
Confidence 9999999999999988887765432 22578999999999997 3345555555443211 1 2899999999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+++.|...+...+.
T Consensus 153 ~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 153 GINIEEAMRFLVKNILA 169 (201)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99997776666655544
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-28 Score=172.73 Aligned_cols=165 Identities=42% Similarity=0.685 Sum_probs=149.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|..|+||||++++|.+.. .. ...||.+|+.....+++..+.+||.+|+...++.|.+|++++|++|||+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-~~--~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvv 91 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-TD--TISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVV 91 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-cc--ccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEE
Confidence 47899999999999999999999887 44 7789999999999999999999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccc-cCcccceeEEEeecCCCCccccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSI-SSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
|.+++.++++..+.+..++......+.|+++++||.|+......+++...++++.. +...| +++-|||.+|+++.+.
T Consensus 92 DssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~--~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 92 DSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW--RLVKCSAVTGEDLLEG 169 (185)
T ss_pred ECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc--eEEEEeccccccHHHH
Confidence 99999999999999999998877788999999999999999999999999998877 55666 9999999999999776
Q ss_pred hHHHHHHHHHH
Q psy12173 210 SVVEAEQAMYA 220 (224)
Q Consensus 210 ~~~~i~~~l~~ 220 (224)
+.-.+.+.+.+
T Consensus 170 idWL~~~l~~r 180 (185)
T KOG0073|consen 170 IDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=180.23 Aligned_cols=147 Identities=36% Similarity=0.565 Sum_probs=127.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
+|+++|++|+|||||++++.+. +.. .+.||.++....+..++..+.+||+||++.++..+..+++++|++++|+|++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~--~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPK--KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCc--cccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 4899999999999999999977 555 6778989888888888899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC-cccceeEEEeecCCC
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS-RQHRIKLIATQAPSN 203 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~ 203 (224)
+++++.+...++..+.......++|+++|+||.|+.+.....++.+.+++..... ....+.+++|||++|
T Consensus 78 ~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 78 DDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred chhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 9999999999999988765446899999999999998887888888877665432 223348999999998
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=178.88 Aligned_cols=153 Identities=37% Similarity=0.624 Sum_probs=123.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
||+++|++++|||||++++..+.+.. +.+|++++...+.+.+..+.+|||||++++...+..+++.+|++++|+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT---TIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC---cCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence 68999999999999999998877543 467888777777778899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
++.++.....++..+.+.....++|+++++||+|+.+.....++.+.+.........+ +++++||++|.|+++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTW--SIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcE--EEEEeeccCCCCHHHHHH
Confidence 9888877777777776654445799999999999976655566665554333322333 899999999999955444
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=185.03 Aligned_cols=158 Identities=20% Similarity=0.297 Sum_probs=119.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|+.|+|||||++++..+.|.. .+.||.+.+. ..+..++ ..+.+||++|++++...+..+++++|++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEE
Confidence 489999999999999999999999887 7788887554 3455554 789999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH---HHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE---EVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
|+|++++++++++..|+..+..... ...| ++|+||+|+.+....+ ...+..+ ... ...++++++|||++|.|
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~--~~a-~~~~~~~~e~SAk~g~~ 153 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQAR--KYA-KAMKAPLIFCSTSHSIN 153 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHHHH--HHH-HHcCCEEEEEeCCCCCC
Confidence 9999999999999999888876432 3456 6889999996432111 1111100 000 11123899999999999
Q ss_pred cccchHHHHHHH
Q psy12173 206 HLHVSVVEAEQA 217 (224)
Q Consensus 206 v~~~~~~~i~~~ 217 (224)
+++.|...+...
T Consensus 154 v~~lf~~l~~~l 165 (182)
T cd04128 154 VQKIFKIVLAKA 165 (182)
T ss_pred HHHHHHHHHHHH
Confidence 966665444443
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=187.74 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=125.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
+||+++|++++|||||++++..+.|.. +.+|++.......+....+.+|||+|++.+...+..+++++|++|+|||+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~---~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD---TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 489999999999999999999999864 35777766665566778899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC---------------------CCHHHHHhhcCcccc-----
Q psy12173 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---------------------LSAEEVGVALDLSSI----- 186 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---------------------~~~~~~~~~~~~~~~----- 186 (224)
++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+..+....
T Consensus 78 t~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 78 SNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 99999999999998887643 257899999999999651 222333332211000
Q ss_pred --cCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 187 --SSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 187 --~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
......++|++|||++|.||++.|...+..++.
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 000112489999999999997777776666554
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=180.03 Aligned_cols=157 Identities=22% Similarity=0.306 Sum_probs=124.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..+||+++|++|+|||||++++.+..|.. .+.+|.+... ..+...+ ..+.+||+||++.+...+..+++++|++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~ 79 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNP--SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 79 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCc--ccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence 46899999999999999999999999887 6677766443 3444444 6889999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++..+.+|+..+.... ..+.|+++++||+|+.+. ...++..+..+. . +++++++||++|.
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~ 151 (167)
T cd01867 80 ILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALADE-----Y--GIKFLETSAKANI 151 (167)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH-----c--CCEEEEEeCCCCC
Confidence 99999999999999999888887642 257899999999999754 233343333321 1 2389999999999
Q ss_pred ccccchHHHHHHH
Q psy12173 205 HHLHVSVVEAEQA 217 (224)
Q Consensus 205 gv~~~~~~~i~~~ 217 (224)
|+++.|...+.+.
T Consensus 152 ~v~~~~~~i~~~~ 164 (167)
T cd01867 152 NVEEAFFTLAKDI 164 (167)
T ss_pred CHHHHHHHHHHHH
Confidence 9966665554444
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=188.45 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=124.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..+||+++|++|+|||||++++..+.|.. .+.||++..+. .+..+ .+.+.+|||+|++.+..+...+++++|+++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 46799999999999999999999999888 77888764443 23343 478999999999999999999999999999
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCcccc
Q psy12173 128 FVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSRQHR 192 (224)
Q Consensus 128 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~ 192 (224)
+|||++++++|... ..|+..+.... ++.|+++|+||+|+.+. ...++..+..+ ..+
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~-------~~~ 160 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK-------QLG 160 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH-------HcC
Confidence 99999999999985 67777776543 47899999999998642 23333333332 122
Q ss_pred e-eEEEeecCCCC-ccccchHHHHHHHHHH
Q psy12173 193 I-KLIATQAPSNL-HHLHVSVVEAEQAMYA 220 (224)
Q Consensus 193 ~-~~~~~Sa~~~~-gv~~~~~~~i~~~l~~ 220 (224)
+ .|++|||++|. |+++.|...+...+.+
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 3 59999999998 7988887777666553
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-28 Score=184.43 Aligned_cols=162 Identities=18% Similarity=0.157 Sum_probs=126.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..+||+++|++|+|||||++++.++.|.. .+.+|.+..+. .+..+ ...+.+|||||++++..++..+++.+|++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 346899999999999999999999998876 66677764443 33443 36788999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++++...|+..+.......+.|+++++||+|+.+. ...++.....+. .. ++++++||++|.
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~-----~~--~~~~e~Sak~~~ 153 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS-----FG--IPFLETSAKQRV 153 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----hC--CEEEEeeCCCCC
Confidence 999999999999999999888876544457899999999998654 233333222211 11 289999999999
Q ss_pred ccccchHHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMYA 220 (224)
Q Consensus 205 gv~~~~~~~i~~~l~~ 220 (224)
|+++.|...+......
T Consensus 154 gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 154 NVDEAFYELVREIRKY 169 (189)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9977666665554443
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=188.43 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=122.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||+.++..+.|+. .+.||++.++. .+..+ ...+.+|||+|++.|...+..+++++|++|+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 689999999999999999999999888 78888875543 34443 47899999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--------------CHHHHHhhcCcccccCcccceeE
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--------------SAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
||++++++++++..+|....... .++.|++||+||+|+.... ..++..... +....++|
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a------k~~~~~~y 152 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA------KQVGAVSY 152 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH------HHcCCCEE
Confidence 99999999999976665544432 2679999999999996531 111111111 11112389
Q ss_pred EEeecCCCCc-cccchHHHHHHHHHH
Q psy12173 196 IATQAPSNLH-HLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~g-v~~~~~~~i~~~l~~ 220 (224)
+||||+++.| |++.|..++...+.+
T Consensus 153 ~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 153 VECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred EEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 9999999985 988888777766653
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-28 Score=188.36 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=127.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..+||+++|++|+|||||++++..+.|.. .+.+|++.......+ ....+.+|||+|++++..++..+++++|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCC--ccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 567899999999999999999999998887 778888866554433 34799999999999999999889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
+|+|||+++++++..+..|+..+.... .+.|+++|+||+|+.... ..+++ +... .. .++|++|||++|.
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~~-----~~--~~~~~e~SAk~~~ 158 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFHR-----KK--NLQYYEISAKSNY 158 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHHH-----hc--CCEEEEcCCCCCC
Confidence 999999999999999999988887653 579999999999996432 22222 2111 12 2389999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++.|...+.+.+.
T Consensus 159 ~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 159 NFEKPFLYLARKLAG 173 (219)
T ss_pred CHHHHHHHHHHHHHc
Confidence 998888776666653
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=178.52 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=119.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.+.. .+.+|++... ..+..+ ...+.+|||||++++...+..+++++|++++|
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 689999999999999999999888776 5667776433 234444 46778999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|+++.++++...+|+..+.......+.|+++++||+|+.+. ...++..+..+ ..+++++++||++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~ 152 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-------QWGCAFLETSAKAKINVN 152 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH-------HhCCEEEEeeCCCCCCHH
Confidence 999999999999999999887655568999999999999754 22333222211 111389999999999995
Q ss_pred cchHHH
Q psy12173 208 HVSVVE 213 (224)
Q Consensus 208 ~~~~~~ 213 (224)
+.|...
T Consensus 153 ~~~~~l 158 (164)
T cd04175 153 EIFYDL 158 (164)
T ss_pred HHHHHH
Confidence 555543
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=180.21 Aligned_cols=164 Identities=32% Similarity=0.448 Sum_probs=127.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-----CCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-----GEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
.+||+++|++|||||||++++....+.. . .||.++....... .+..+.+|||||++++...+..+++.+|++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~--~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN--T-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC--c-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEE
Confidence 5799999999999999999999888764 3 4666655544333 457899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
++|+|+++++++.....++..+.......++|+++++||+|+.+....+++.+.++...... ...++++++||++|.|+
T Consensus 80 i~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 80 VFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSA-STPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCC-CCceEEEEeecccCCCH
Confidence 99999999988888888888777654445799999999999987666666666665432211 11237899999999999
Q ss_pred ccchHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMY 219 (224)
Q Consensus 207 ~~~~~~~i~~~l~ 219 (224)
++.+...+...+.
T Consensus 159 ~~l~~~l~~~l~~ 171 (183)
T cd04152 159 QEGLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555544443
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=178.71 Aligned_cols=158 Identities=18% Similarity=0.293 Sum_probs=121.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
||+++|++|+|||||++++..+.|.. .+.+|++..+ ..+..++ ..+.+|||||++++...+..+++++|++++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK--NYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence 79999999999999999999999887 7778877544 3344443 6899999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+++++++.....|+..+.........|+++|+||.|+.+... .++..+..+ ..+++++++||++|.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~e~Sa~~g~~ 152 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-------EMQAEYWSVSALSGEN 152 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHH-------HcCCeEEEEECCCCCC
Confidence 99999999999999998887664434578999999999965422 111111111 1113899999999999
Q ss_pred cccchHHHHHHHHHHh
Q psy12173 206 HLHVSVVEAEQAMYAL 221 (224)
Q Consensus 206 v~~~~~~~i~~~l~~~ 221 (224)
+++.|. .+.+.+..|
T Consensus 153 v~~lf~-~l~~~~~~~ 167 (170)
T cd04108 153 VREFFF-RVAALTFEL 167 (170)
T ss_pred HHHHHH-HHHHHHHHc
Confidence 955444 444444443
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=181.83 Aligned_cols=156 Identities=43% Similarity=0.696 Sum_probs=140.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
....+|+++|..+|||||+++++..+.+. ...||.+++...+.+++..+.+||++|+..++..|..+++.+|++|||
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~---~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS---ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE---EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc---ccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEE
Confidence 45789999999999999999999987633 467899999999999999999999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc-CcccceeEEEeecCCCCcccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS-SRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+|.++.+.+.+..+.+..++......+.|+++++||.|+.+....+++.+.+++.... .+.+ .++.|||.+|+|+.+
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~--~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPW--SVFSCSAKTGEGVDE 166 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCE--EEEEEBTTTTBTHHH
T ss_pred EecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCce--EEEeeeccCCcCHHH
Confidence 9999999999999999999987666789999999999999999999999999887765 4555 899999999999954
Q ss_pred ch
Q psy12173 209 VS 210 (224)
Q Consensus 209 ~~ 210 (224)
.+
T Consensus 167 ~l 168 (175)
T PF00025_consen 167 GL 168 (175)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=178.29 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|.. .+.+|++ .....+..++ ..+.+|||||++++...+..+++++|++++|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 699999999999999999999988776 5666665 2333444544 6788999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|++++++++....|+..+.......+.|+++++||+|+.+. ...++.....+ .++++++++||++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR-------QWGCPFYETSAKSKINVD 152 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH-------HcCCeEEEecCCCCCCHH
Confidence 999999999999999888877654467999999999999653 22222222211 111389999999999995
Q ss_pred cchHHH
Q psy12173 208 HVSVVE 213 (224)
Q Consensus 208 ~~~~~~ 213 (224)
+.|...
T Consensus 153 ~l~~~l 158 (163)
T cd04136 153 EVFADL 158 (163)
T ss_pred HHHHHH
Confidence 555433
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=175.57 Aligned_cols=154 Identities=36% Similarity=0.621 Sum_probs=130.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
||+++|.+|+|||||++++.+..+ . .+.+|.++....+.+.+..+.+||+||++.+...+..+++.+|++++|+|++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-V--TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-C--CCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 689999999999999999999883 3 4677888888888888899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHH
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVV 212 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 212 (224)
+++++.....++..+.......+.|+++++||+|+......++..+.++........+ +++++||++|.|+++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~~~~~~ 154 (158)
T cd00878 78 DRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRW--HIQPCSAVTGDGLDEGLDW 154 (158)
T ss_pred CHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcE--EEEEeeCCCCCCHHHHHHH
Confidence 9999999999998888765556899999999999988766777777765432222333 8999999999999555443
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=176.94 Aligned_cols=155 Identities=22% Similarity=0.279 Sum_probs=122.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.++.+.. .+.+|.+.... .+..+ ...+.+|||||++.+...+..+++.+|++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS--KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEE
Confidence 489999999999999999999999887 67777775443 34443 4789999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCC----CCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRL----STVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
|+|.+++++++....|+..+...... .+.|+++|+||+|+.++ ...++....... .. ++++++||++
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~--~~~~~~Sa~~ 151 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES-----KG--FKYFETSACT 151 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-----cC--CeEEEEECCC
Confidence 99999999999999988888765432 46899999999999742 334443332211 11 3899999999
Q ss_pred CCccccchHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQ 216 (224)
Q Consensus 203 ~~gv~~~~~~~i~~ 216 (224)
|.|+++.+...+..
T Consensus 152 ~~gi~~l~~~l~~~ 165 (168)
T cd04119 152 GEGVNEMFQTLFSS 165 (168)
T ss_pred CCCHHHHHHHHHHH
Confidence 99996665554444
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=179.74 Aligned_cols=159 Identities=35% Similarity=0.565 Sum_probs=131.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+..+|+++|++|+|||||++++.+..+. .+.+|.+.....+.+++..+.+||+||++.+...+..+++++|++++|+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~ 94 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLV 94 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4579999999999999999999988753 4567777777788888899999999999999988888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC---------cccceeEEEeecC
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS---------RQHRIKLIATQAP 201 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~Sa~ 201 (224)
|+++.+++.....++..+.......+.|+++++||+|+.+....+++.+.++...... ....+++++|||+
T Consensus 95 D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T cd00879 95 DAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVV 174 (190)
T ss_pred ECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEec
Confidence 9999999998888999888765446799999999999987777888888776533211 1222489999999
Q ss_pred CCCccccchHH
Q psy12173 202 SNLHHLHVSVV 212 (224)
Q Consensus 202 ~~~gv~~~~~~ 212 (224)
+|+|+++.|..
T Consensus 175 ~~~gv~e~~~~ 185 (190)
T cd00879 175 KRQGYGEAFRW 185 (190)
T ss_pred CCCChHHHHHH
Confidence 99999555543
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=175.90 Aligned_cols=153 Identities=38% Similarity=0.639 Sum_probs=124.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
+|+++|++|+|||||++++.++.+.. ..+|.++....+.. ....+.+||+||++.+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT---TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc---ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999988654 35777777666665 357899999999999999888889999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC-cccceeEEEeecCCCCccccchH
Q psy12173 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS-RQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
+++.++.....++..++......+.|+++++||+|+......+++...++...... .. +++++|||++|.|+++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~~~~ 155 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRD--WYVQPCSAVTGEGLAEAFR 155 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCc--EEEEecccccCCChHHHHH
Confidence 99999999999998887765446899999999999977666677766655432221 23 3799999999999955443
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=177.52 Aligned_cols=158 Identities=30% Similarity=0.558 Sum_probs=125.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC----CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTS----LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+|+++|++|+|||||++++...... ....+.+|.+.+...+.+++..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 5899999999999999999865422 112456777877778888889999999999999999888899999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|+++++++.....++..+.......+.|+++++||+|+......++..+.++..........++++++||++|.|+++.
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999988998888888887765456899999999999988766666666654332111112248999999999999554
Q ss_pred hH
Q psy12173 210 SV 211 (224)
Q Consensus 210 ~~ 211 (224)
+.
T Consensus 161 ~~ 162 (167)
T cd04160 161 IE 162 (167)
T ss_pred HH
Confidence 43
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-27 Score=175.93 Aligned_cols=155 Identities=21% Similarity=0.267 Sum_probs=121.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++.++.+.. .+.+|.+. ....+..++ ..+.+||+||++++...+..+++++|+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence 4799999999999999999999998877 55566553 444455544 57899999999999999888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|+++++++.++.+|+..+.... ..+.|+++++||.|+... ...++.....+. ++++++++||++|+|
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~ 151 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADE-------LGIPFLETSAKNATN 151 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHH-------cCCeEEEEECCCCcC
Confidence 9999999999999999988876643 257899999999998654 233333333321 123899999999999
Q ss_pred cccchHHHHHH
Q psy12173 206 HLHVSVVEAEQ 216 (224)
Q Consensus 206 v~~~~~~~i~~ 216 (224)
+++.|...+..
T Consensus 152 v~~~~~~i~~~ 162 (166)
T cd01869 152 VEQAFMTMARE 162 (166)
T ss_pred HHHHHHHHHHH
Confidence 96666554443
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=179.01 Aligned_cols=155 Identities=32% Similarity=0.543 Sum_probs=131.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.++|+++|.+|+|||||++++.++.+.. +.||.+.....+..++.++.+||+||++.++..+..++.++|++++|+|
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD 93 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD 93 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 4799999999999999999999887543 4567777777777888999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC-------cccceeEEEeecCCCC
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS-------RQHRIKLIATQAPSNL 204 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~ 204 (224)
+++++++.....++..+.......++|+++++||.|+......+++.+.+++..... +.+ .+++|||++|.
T Consensus 94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~--~i~~~Sa~~~~ 171 (184)
T smart00178 94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPL--EVFMCSVVRRM 171 (184)
T ss_pred CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCcee--EEEEeecccCC
Confidence 999999988888888887654446799999999999988888889998887654321 344 89999999999
Q ss_pred ccccchH
Q psy12173 205 HHLHVSV 211 (224)
Q Consensus 205 gv~~~~~ 211 (224)
|+++.+.
T Consensus 172 g~~~~~~ 178 (184)
T smart00178 172 GYGEGFK 178 (184)
T ss_pred ChHHHHH
Confidence 9954443
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-28 Score=169.75 Aligned_cols=156 Identities=23% Similarity=0.312 Sum_probs=128.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++.+++|++|+|||+|+.++.++.|.. .|..|+|. ....+.+ +.+++.||||+|+++++.+...++++.++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~--sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSG--SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhccccc--ceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 345788999999999999999999999998 77777774 4444555 34899999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-----CHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-----SAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+++|||+++.+||.+..+|+.++.++. ...|-++|+||.|.++.. +...+...+++ .++++||
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi----------e~FETSa 151 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI----------ELFETSA 151 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcCc----------hheehhh
Confidence 999999999999999999999998765 589999999999998752 22333344433 8999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
+.++|++..|.-...+.+.
T Consensus 152 Ke~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 152 KENENVEAMFHCITKQVLQ 170 (198)
T ss_pred hhcccchHHHHHHHHHHHH
Confidence 9999996666554444443
|
|
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=178.94 Aligned_cols=166 Identities=19% Similarity=0.234 Sum_probs=138.3
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEeC--CeEEEEEEcCCchhHHHHHHhhccC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQKG--EYTLNIFELGGQENVRRFWNTYFED 122 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ 122 (224)
.+.++.+||+++|++++|||-|+.|+..+.|.. ...+|+|..... +.++ .++..+|||+||++|+.....+++.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~--~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSL--ESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCc--ccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 345788999999999999999999999999999 777888855444 4444 4889999999999999999999999
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+.+.++|||+++..+|+++..|+.++..+.. .++++++|+||+||.+. ...++.+...+.... .|+++||
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l-------~f~EtSA 158 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL-------FFLETSA 158 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHHHhcCc-------eEEEecc
Confidence 9999999999999999999999999988765 68999999999999773 334444444432222 8999999
Q ss_pred CCCCccccchHHHHHHHHHHhh
Q psy12173 201 PSNLHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~~~~ 222 (224)
..+.|+++.|...+..++...+
T Consensus 159 l~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 159 LDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred cccccHHHHHHHHHHHHHHHHH
Confidence 9999999888777777766543
|
|
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=174.75 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++.++++.. .+.+|.+.. ...+..++ ..+.+|||+|++++...+..+++.+|++++|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC--CcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 589999999999999999999998776 666766633 33344444 5688999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+|+++.+++.+...|+..+.......+.|+++|+||+|+.+. ...++..+..+. . +++++++||++|.|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKS-----Y--GIPYIETSAKTRQGVEE 152 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHH-----h--CCeEEEecCCCCCCHHH
Confidence 999999999999888888877654468999999999999764 223333333211 1 23899999999999965
Q ss_pred chHHHH
Q psy12173 209 VSVVEA 214 (224)
Q Consensus 209 ~~~~~i 214 (224)
.|...+
T Consensus 153 l~~~l~ 158 (162)
T cd04138 153 AFYTLV 158 (162)
T ss_pred HHHHHH
Confidence 554433
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=168.33 Aligned_cols=161 Identities=16% Similarity=0.270 Sum_probs=133.1
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEe--CCeEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQK--GEYTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
.-++.+|++++|+..+|||||+.++.+..|.. .+.+|.|...+. +.. +.+++.+|||.|+++++.+...+++++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~--afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhcccccc--ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 33567799999999999999999999999998 777888855443 222 458999999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCH---HHHHhhcCcccccCcccceeEEEe
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSA---EEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+++|+|+|+++.+||..+..|.-.+.... ..+.|+|+|+||||+.++ ... ..+.+.++. .|+|+
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf----------efFEt 163 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLADQLGF----------EFFET 163 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHHHhCh----------HHhhh
Confidence 99999999999999999999988887664 378999999999999876 223 334445544 89999
Q ss_pred ecCCCCccccchHHHHHHHHHHh
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
|||.+.||...|...+..+-.++
T Consensus 164 SaK~NinVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 164 SAKENINVKQVFERLVDIICDKM 186 (193)
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 99999999877777766655544
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=175.11 Aligned_cols=154 Identities=22% Similarity=0.287 Sum_probs=119.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+.+||+++|++|+|||||++++..+.+.. .+.++.+ +....+.+++ ..+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 79 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSE--RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGA 79 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcc--cCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence 46899999999999999999999988776 4555554 4445566655 6889999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+..+. .+.. .++++||++|.
T Consensus 80 llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~--~~~e~Sa~~~~ 152 (165)
T cd01864 80 IIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEK----NGML--AVLETSAKESQ 152 (165)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCc--EEEEEECCCCC
Confidence 99999999999999999988886643 3578999999999997542 23333332221 1112 78999999999
Q ss_pred ccccchHHH
Q psy12173 205 HHLHVSVVE 213 (224)
Q Consensus 205 gv~~~~~~~ 213 (224)
|+++.+...
T Consensus 153 ~v~~~~~~l 161 (165)
T cd01864 153 NVEEAFLLM 161 (165)
T ss_pred CHHHHHHHH
Confidence 995555443
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-27 Score=175.46 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=118.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.+++|.. .+.+|.+... ..+..+ ...+.+|||||++++...+..+++++|++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEE
Confidence 689999999999999999999999877 6667776433 333333 3689999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++.+..|+..+.... ....|+++|+||+|+.+. ...++..+..+. ..+ +++++||++|.|+
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~--~~~~~Sa~~~~gv 151 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQ-----LGF--EFFEASAKENINV 151 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHH-----cCC--EEEEEECCCCCCH
Confidence 999999999999999988876543 247899999999999654 223333332221 112 8999999999999
Q ss_pred ccchHHHH
Q psy12173 207 LHVSVVEA 214 (224)
Q Consensus 207 ~~~~~~~i 214 (224)
++.|...+
T Consensus 152 ~~l~~~l~ 159 (165)
T cd01865 152 KQVFERLV 159 (165)
T ss_pred HHHHHHHH
Confidence 55544443
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-27 Score=175.02 Aligned_cols=152 Identities=15% Similarity=0.184 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.|.. .+.+|.+... ..+...+ ..+.+||++|++++...+..+++++|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHS--SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEE
Confidence 489999999999999999999999887 6677877544 3455554 678999999999999988889999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++.+..|+..+.... ..+.|+++|+||.|+.+.. ..++.....+ .++++|++|||++|.|+
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~Sa~~~~~v 150 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAK-------EYGMDFFETSACTNSNI 150 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHH-------HcCCEEEEEeCCCCCCH
Confidence 999999999999999988876543 2468999999999996543 2333322221 12248999999999999
Q ss_pred ccchHHHH
Q psy12173 207 LHVSVVEA 214 (224)
Q Consensus 207 ~~~~~~~i 214 (224)
++.|...+
T Consensus 151 ~~~f~~l~ 158 (161)
T cd04117 151 KESFTRLT 158 (161)
T ss_pred HHHHHHHH
Confidence 66665544
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=179.01 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||+.++..+.|.. .+.||.+..+. .+..++ ..+.+|||+|++.+...+..+++++|++|+|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--cCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 689999999999999999999998877 66777653322 334443 7789999999999999988899999999999
Q ss_pred EECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhcCcc-------cccCcccceeEEEeec
Q psy12173 130 VDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVALDLS-------SISSRQHRIKLIATQA 200 (224)
Q Consensus 130 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~Sa 200 (224)
||+++++++.+... |+..+.... .+.|+++|+||+|+.+.. ..+.+.+..... .+..+...++|++|||
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 157 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 157 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecc
Confidence 99999999999865 555554432 579999999999996531 111111110000 0000111238999999
Q ss_pred CCCCccccchHHHH
Q psy12173 201 PSNLHHLHVSVVEA 214 (224)
Q Consensus 201 ~~~~gv~~~~~~~i 214 (224)
++|+|+++.|...+
T Consensus 158 ~~~~~i~~~f~~l~ 171 (174)
T cd01871 158 LTQKGLKTVFDEAI 171 (174)
T ss_pred cccCCHHHHHHHHH
Confidence 99999966665444
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=168.08 Aligned_cols=163 Identities=17% Similarity=0.182 Sum_probs=132.9
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEe--CCeEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQK--GEYTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
..++.+|++++|+.|+|||+|+.++..++|.. ....|++..+.. +++ +.+++.+|||.|++++++....+++++
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkD--dssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKD--DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcc--cccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34678999999999999999999999999988 778888865543 444 458999999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+.++|+|++++++|+.+..|+........ +++-+++++||.|+..... ..+.....+... ..+.++||+
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs-~nIvviL~GnKkDL~~~R~VtflEAs~FaqEne-------l~flETSa~ 154 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQENE-------LMFLETSAL 154 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCC-CcEEEEEeCChhhcChhhhhhHHHHHhhhcccc-------eeeeeeccc
Confidence 999999999999999999999999876532 5677899999999976532 233222222111 179999999
Q ss_pred CCCccccchHHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~ 220 (224)
+|+|+++.|..-...++.+
T Consensus 155 TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 155 TGENVEEAFLKCARTILNK 173 (214)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 9999999998877777664
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=179.56 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=119.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
||+++|++|+|||||++++..+.|.. .+.+|++... ..+..++ ..+.+|||||++++...+..+++.+|++|+||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 58999999999999999999988876 6667776433 3344444 56899999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|++++++++.+..|+..+..... ..+.|+++|+||+|+.+. ...++..+..+ ..+++++++||++|.|+
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~SAk~~~~v 151 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALAR-------RLGCEFIEASAKTNVNV 151 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHH-------HhCCEEEEecCCCCCCH
Confidence 99999999999999888765432 257899999999999653 22333222211 11238999999999999
Q ss_pred ccchHHHHHHH
Q psy12173 207 LHVSVVEAEQA 217 (224)
Q Consensus 207 ~~~~~~~i~~~ 217 (224)
++.|...+...
T Consensus 152 ~~l~~~l~~~l 162 (190)
T cd04144 152 ERAFYTLVRAL 162 (190)
T ss_pred HHHHHHHHHHH
Confidence 66666555443
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=174.96 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=123.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..+||+++|++++|||||++++..+++.. .+.++.+... ..+..++ ..+.+||+||+++++..+..+++++|+
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 80 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDC 80 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCc--CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCE
Confidence 356899999999999999999999998877 5566666543 3444443 678999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCC---CCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQR---LSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+++|+|++++++++....|+..+..... ..+.|+++++||+|+... ...++..+..+.. .. ++++++||+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~--~~~~e~Sa~ 154 (170)
T cd04116 81 CLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----GD--YPYFETSAK 154 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----CC--CeEEEEECC
Confidence 9999999999999999888887766432 246899999999999643 3445554444211 11 279999999
Q ss_pred CCCccccchHHHHH
Q psy12173 202 SNLHHLHVSVVEAE 215 (224)
Q Consensus 202 ~~~gv~~~~~~~i~ 215 (224)
+|.|+++.|...+.
T Consensus 155 ~~~~v~~~~~~~~~ 168 (170)
T cd04116 155 DATNVAAAFEEAVR 168 (170)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999666665543
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=174.60 Aligned_cols=155 Identities=16% Similarity=0.215 Sum_probs=118.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.|.+ ...++.+.... .... ....+.+|||+|++++...+..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP--QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence 489999999999999999999998877 55555554332 2333 34678999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|+|++++.++.....|+..+.... .+.|+++++||+|+.... ..+..+..+ ... ++++++||++|.|+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~~~~~~-----~~~--~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKKFNFAE-----KHN--LPLYYVSAADGTNVVK 148 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHHHHHHH-----HcC--CeEEEEeCCCCCCHHH
Confidence 999999999999888888876542 478999999999985331 111111111 112 3899999999999976
Q ss_pred chHHHHHHHHH
Q psy12173 209 VSVVEAEQAMY 219 (224)
Q Consensus 209 ~~~~~i~~~l~ 219 (224)
.|...+..++.
T Consensus 149 l~~~l~~~~~~ 159 (161)
T cd04124 149 LFQDAIKLAVS 159 (161)
T ss_pred HHHHHHHHHHh
Confidence 66655555443
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=180.80 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=124.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC---CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG---EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
.+||+++|++|+|||||++++.++.+.. .+.+|++... ..+... ...+.+|||+|++.+......+++++|++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~--~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 79 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAE--VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGV 79 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEE
Confidence 4799999999999999999999998877 5566766443 334432 36899999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|||++++++++++..|+..+.........|+++++||.|+... ...++..+..+ ..+++|+++||++|.
T Consensus 80 ilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~Sak~g~ 152 (211)
T cd04111 80 LLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK-------DLGMKYIETSARTGD 152 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH-------HhCCEEEEEeCCCCC
Confidence 999999999999999999998876544346789999999999753 23333332221 112389999999999
Q ss_pred ccccchHHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMYA 220 (224)
Q Consensus 205 gv~~~~~~~i~~~l~~ 220 (224)
|+++.|...+.....+
T Consensus 153 ~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 153 NVEEAFELLTQEIYER 168 (211)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9977776555554443
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=173.43 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=123.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..+||+++|++|+|||||++++....+.. ...++.+.. ...+..++ ..+.+||+||++++......+++.+|++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 45799999999999999999999998777 445555533 33344443 6899999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++..+..|+..+..... ++.|+++|+||.|+.+. ...++....... . +++++++||++|.
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~e~Sa~~~~ 152 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSN-SNMTIMLIGNKCDLESRREVSYEEGEAFAKE-----H--GLIFMETSAKTAS 152 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccccccCCCHHHHHHHHHH-----c--CCEEEEEeCCCCC
Confidence 999999999999999999988866532 57999999999999743 334444333321 1 2389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.|...+...+
T Consensus 153 ~i~~~~~~~~~~~~ 166 (168)
T cd01866 153 NVEEAFINTAKEIY 166 (168)
T ss_pred CHHHHHHHHHHHHH
Confidence 99777766655544
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=174.20 Aligned_cols=155 Identities=20% Similarity=0.245 Sum_probs=119.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++.+..+.. .+.+|.+.. ...+..+ ...+.+|||||++++...+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence 489999999999999999999988776 555665522 2334443 36788999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|++++++++....|+..+.......+.|+++|+||+|+... ...++..+..+. .+++++++||++|.|++
T Consensus 79 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~ 151 (164)
T smart00173 79 YSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-------WGCPFLETSAKERVNVD 151 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-------cCCEEEEeecCCCCCHH
Confidence 999999999999998888776554457899999999999754 223333322221 11389999999999995
Q ss_pred cchHHHHHHH
Q psy12173 208 HVSVVEAEQA 217 (224)
Q Consensus 208 ~~~~~~i~~~ 217 (224)
+.|. .+.+.
T Consensus 152 ~l~~-~l~~~ 160 (164)
T smart00173 152 EAFY-DLVRE 160 (164)
T ss_pred HHHH-HHHHH
Confidence 5554 44433
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-27 Score=174.63 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=114.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+||+++|++|+|||||+.++..+.|.. .+.|+.+.....+..++ ..+.+|||+|++.. .+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ--LESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEE
Confidence 489999999999999999999988876 45555554445566665 67899999999763 3567899999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC----CCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG----ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|++++++|+++..|+..+.......+.|+++|+||.|+.. ....++..+..+ ....+.|++|||++|.|+
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~------~~~~~~~~e~SAk~~~~i 147 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA------DMKRCSYYETCATYGLNV 147 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH------HhCCCcEEEEecCCCCCH
Confidence 9999999999999999887765546789999999999843 122333222221 111238999999999999
Q ss_pred ccchHHHHH
Q psy12173 207 LHVSVVEAE 215 (224)
Q Consensus 207 ~~~~~~~i~ 215 (224)
++.|...+.
T Consensus 148 ~~~f~~~~~ 156 (158)
T cd04103 148 ERVFQEAAQ 156 (158)
T ss_pred HHHHHHHHh
Confidence 777765553
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=170.30 Aligned_cols=152 Identities=38% Similarity=0.635 Sum_probs=127.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
|+++|++|+|||||++++.+..+.. .+.+|.++....+...+..+.+||+||++.++..+..++..+|++++|+|+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE--DTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc--CccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC
Confidence 7899999999999999999999887 77888888888777788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 135 PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 135 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
.+++.....++..+.......++|+++++||.|+.+....++..+.........+.. +++++||++|.|+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREV--SCYSISCKEKTNIDIVL 153 (159)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCce--EEEEEEeccCCChHHHH
Confidence 888888888888887654446889999999999987655555555554433333333 89999999999994433
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=181.11 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=120.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.||+++|++|+|||||++++..+.|.. .+.||.+..+. .+..+ ...+.+|||+|++.+...+..+++.+|++++|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv 78 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLC 78 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEE
Confidence 389999999999999999999999877 66677764433 23333 37899999999999988888889999999999
Q ss_pred EECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCc--------ccccCcccceeEEEeec
Q psy12173 130 VDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDL--------SSISSRQHRIKLIATQA 200 (224)
Q Consensus 130 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~Sa 200 (224)
||++++++++.+.. |+..+.... .+.|+++|+||+|+.+.....+.....+. .........++|++|||
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 156 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSA 156 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccC
Confidence 99999999998864 666665432 57999999999999765332221111100 00000111248999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
++|.|+++.|...+..++.
T Consensus 157 k~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 157 KLNRGVNEAFTEAARVALN 175 (189)
T ss_pred CcCCCHHHHHHHHHHHHhc
Confidence 9999997777766665553
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=178.73 Aligned_cols=158 Identities=22% Similarity=0.271 Sum_probs=124.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..++|+++|++|+|||||++++.+..|.. .+.+|.+... ..+...+ ..+.+||+||++.+...+..++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 46899999999999999999999998876 6667776443 3444443 6789999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++.+..|+..+.... ...|+++|+||+|+.+. ...++....... .+++++++||++|.
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~e~Sa~~~~ 153 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQ-------MGISLFETSAKENI 153 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHHH-------cCCEEEEEECCCCc
Confidence 99999999999999999988876543 57899999999999764 233333333221 11389999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++.|...+...+.
T Consensus 154 gi~~lf~~l~~~~~~ 168 (199)
T cd04110 154 NVEEMFNCITELVLR 168 (199)
T ss_pred CHHHHHHHHHHHHHH
Confidence 997766666665554
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-27 Score=163.83 Aligned_cols=157 Identities=33% Similarity=0.565 Sum_probs=147.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+.++|+++|-.++||||++..|..+. +. ...||+||+...+.+++..+.+||++|++..+..|.+++....++|||+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~--~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~ 92 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-SV--TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 92 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-Cc--ccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEE
Confidence 46899999999999999999999887 44 6789999999999999999999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|.++.+.+++.++.++.+++.......|+++.+||-|++....+.|+.+.++++..+.+.| .+.++||.+|.|+.|-+
T Consensus 93 Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W--~vqp~~a~~gdgL~egl 170 (180)
T KOG0071|consen 93 DSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNW--YVQPSCALSGDGLKEGL 170 (180)
T ss_pred eccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCcc--EeeccccccchhHHHHH
Confidence 9999999999999999999998888999999999999999999999999999999888999 99999999999996655
Q ss_pred HH
Q psy12173 211 VV 212 (224)
Q Consensus 211 ~~ 212 (224)
.-
T Consensus 171 sw 172 (180)
T KOG0071|consen 171 SW 172 (180)
T ss_pred HH
Confidence 43
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-27 Score=174.42 Aligned_cols=153 Identities=20% Similarity=0.202 Sum_probs=119.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.+||+++|++|+|||||++++.++.+.. .+.+|++.. ......++ ..+.+|||||++++...+..+++++|++++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVT--DYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCc--ccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 4799999999999999999999988765 556666533 23344444 678899999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++....|+..+.......+.|+++++||+|+.... ..++..+..+. .. ++++++||++|.|+
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~-----~~--~~~~~~Sa~~~~~i 152 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARK-----LK--IPYIETSAKDRLNV 152 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHH-----cC--CcEEEeeCCCCCCH
Confidence 99999999999999998888775444678999999999997542 23333222211 12 28999999999999
Q ss_pred ccchHHH
Q psy12173 207 LHVSVVE 213 (224)
Q Consensus 207 ~~~~~~~ 213 (224)
++.|...
T Consensus 153 ~~l~~~l 159 (164)
T cd04145 153 DKAFHDL 159 (164)
T ss_pred HHHHHHH
Confidence 6555443
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=174.04 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=119.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.+.. .+.+|.+ +....+..++ ..+.+|||||++++...+..+++++|++++|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 689999999999999999999998877 5666654 3334455544 5688999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|+++++++.+...|+..+.......++|+++|+||+|+.+.. ...+...... ..++++++|||++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE-------EWGCPFMETSAKSKTMVN 152 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH-------HhCCEEEEecCCCCCCHH
Confidence 9999999999999998888775444689999999999986532 2222222111 112389999999999996
Q ss_pred cchHHHH
Q psy12173 208 HVSVVEA 214 (224)
Q Consensus 208 ~~~~~~i 214 (224)
+.|...+
T Consensus 153 ~l~~~l~ 159 (163)
T cd04176 153 ELFAEIV 159 (163)
T ss_pred HHHHHHH
Confidence 6555433
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=180.41 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC---CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG---EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+||+++|++|+|||||+++|.++.|.. .+.+|.+... ..+... ...+.+|||+|++.+...+..+++++|++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~--~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGK--SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEE
Confidence 489999999999999999999998877 7778877543 344443 478999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|++++++++.+..|+..+..... ..+.|+++|+||.|+.+. ...++..+..+. . +++++++||++|
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~-----~--~~~~~~iSAktg 151 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQA-----N--GMESCLVSAKTG 151 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHH-----c--CCEEEEEECCCC
Confidence 99999999999999988888776532 235689999999999643 233333322211 1 128999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
+|+++.|...+.+
T Consensus 152 ~gv~~lf~~l~~~ 164 (215)
T cd04109 152 DRVNLLFQQLAAE 164 (215)
T ss_pred CCHHHHHHHHHHH
Confidence 9995555544444
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=174.57 Aligned_cols=155 Identities=21% Similarity=0.336 Sum_probs=127.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
||+++|++++|||||++++.++.|+. .+.+|.+..... +..++ ..+.+||++|++++......+++++|++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE--NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS--SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999888 777887654443 44433 7899999999999999888899999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC--CCCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
||+++++|++.+..|+..+..... .+.|+++++||.|+.+ ....++..+..... +++|++|||+++.|+.
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~ 150 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKEL-------GVPYFEVSAKNGENVK 150 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHT-------TSEEEEEBTTTTTTHH
T ss_pred cccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHh-------CCEEEEEECCCCCCHH
Confidence 999999999999999988877654 4689999999999976 45555544444221 1399999999999997
Q ss_pred cchHHHHHHHH
Q psy12173 208 HVSVVEAEQAM 218 (224)
Q Consensus 208 ~~~~~~i~~~l 218 (224)
+.|...+.+.+
T Consensus 151 ~~f~~~i~~i~ 161 (162)
T PF00071_consen 151 EIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777766654
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=171.77 Aligned_cols=153 Identities=22% Similarity=0.261 Sum_probs=119.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++++|||||++++.++.+.. .+.+|.+. ....+..++ ..+.+||+||++++...+..+++.+++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL--DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 4799999999999999999999998876 55566654 344455544 57899999999999998888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|+++++++..+.+|+..+.... ..++|+++|+||.|+... ...++....... .+++++++||++|.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~ 152 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-------NGLSFIETSALDGTN 152 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHH-------cCCEEEEEECCCCCC
Confidence 9999999999999999888876653 246899999999999754 233343333321 123899999999999
Q ss_pred cccchHHHH
Q psy12173 206 HLHVSVVEA 214 (224)
Q Consensus 206 v~~~~~~~i 214 (224)
+++.+...+
T Consensus 153 v~~l~~~l~ 161 (165)
T cd01868 153 VEEAFKQLL 161 (165)
T ss_pred HHHHHHHHH
Confidence 955554443
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=174.95 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=123.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.++.|.. .+.+|.+.. ...+..++ ..+.+||++|++.+...+..+++++|++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE--STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEE
Confidence 489999999999999999999998876 566776643 34455443 678999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++..+..|+..+..... ...|+++++||.|+.+.. ..++.....+. .. ++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~-----~~--~~~~evSa~~~~~i 150 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDLVNNKVVDSNIAKSFCDS-----LN--IPFFETSAKQSINV 150 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCCcccccCCHHHHHHHHHH-----cC--CeEEEEeCCCCCCH
Confidence 9999999999999998888766432 458999999999997542 33333222211 12 28999999999999
Q ss_pred ccchHHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMYA 220 (224)
Q Consensus 207 ~~~~~~~i~~~l~~ 220 (224)
++.|...+..++.+
T Consensus 151 ~~~f~~l~~~~~~~ 164 (188)
T cd04125 151 EEAFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666666543
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=171.79 Aligned_cols=148 Identities=17% Similarity=0.311 Sum_probs=117.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC----CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG----EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~----~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+||+++|++++|||||++++..+.+.. .+.+|.+..+. .+... ...+.+|||||++++...+..+++++|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK--DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEE
Confidence 489999999999999999999998877 66677765543 33333 47899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++..+..|+..+.... .+.|+++|+||.|+... ...++..+..+. .+++++++||++|.
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 149 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKR-------LQLPLFRTSVKDDF 149 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHH-------cCCeEEEEECCCCC
Confidence 99999999999999988888875533 57999999999999653 333333333321 12389999999999
Q ss_pred ccccchH
Q psy12173 205 HHLHVSV 211 (224)
Q Consensus 205 gv~~~~~ 211 (224)
|+++.+.
T Consensus 150 ~v~~l~~ 156 (162)
T cd04106 150 NVTELFE 156 (162)
T ss_pred CHHHHHH
Confidence 9955443
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-27 Score=172.81 Aligned_cols=162 Identities=36% Similarity=0.593 Sum_probs=148.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
....+|+++|-.++||||+++++..+++.. ..||+|++...+.+++..+.+||.+|+++++..|..+++..+++|||
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vt---tvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV 91 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCccc---CCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence 356899999999999999999999998655 38999999999999999999999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|.+|++++.+..+.+..++........|+++.+||.|++...+..++.+.+.+.....+.| .+..|+|.+|+|+.+
T Consensus 92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w--~iq~~~a~~G~GL~e- 168 (181)
T KOG0070|consen 92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW--HIQSTCAISGEGLYE- 168 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc--EEeeccccccccHHH-
Confidence 99999999999999999999988778999999999999999999999999999999999999 999999999999944
Q ss_pred hHHHHHHH
Q psy12173 210 SVVEAEQA 217 (224)
Q Consensus 210 ~~~~i~~~ 217 (224)
-.+-+.+.
T Consensus 169 gl~wl~~~ 176 (181)
T KOG0070|consen 169 GLDWLSNN 176 (181)
T ss_pred HHHHHHHH
Confidence 33344333
|
|
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=173.20 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=116.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|.. .+.+|.+..+.. +.. ....+.+|||||++++......+++.+|++++|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 689999999999999999999999876 666666633322 223 347899999999999998888889999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcC--CCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQ--RLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+++++++++..+|+..+.... ...+.|+++|+||+|+.+. ...++...... .+.++|++|||++|.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~SA~~g~~ 152 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT-------EWNCAFMETSAKTNHN 152 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH-------HhCCcEEEeecCCCCC
Confidence 99999999999988887665432 2257899999999999653 22222222211 1224899999999999
Q ss_pred cccchHHH
Q psy12173 206 HLHVSVVE 213 (224)
Q Consensus 206 v~~~~~~~ 213 (224)
+++.|...
T Consensus 153 v~~~f~~l 160 (165)
T cd04140 153 VQELFQEL 160 (165)
T ss_pred HHHHHHHH
Confidence 96555443
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=174.98 Aligned_cols=159 Identities=20% Similarity=0.297 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.+... .+.+|++.... .+..++ ..+.+|||||++++...+..+++.+|++|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG-NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc-CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 4899999999999999999999887531 34556654433 344443 689999999999999988888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++++..|+..+.... ..+.|+++|+||.|+... ...++.....+. .+++|+++||++|.|+
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~-------~~~~~~e~Sa~~~~~v 151 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKE-------YGVPFMETSAKTGLNV 151 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHH-------cCCeEEEEeCCCCCCH
Confidence 999999999999998888876643 247899999999999643 233333333211 1238999999999999
Q ss_pred ccchHHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMYA 220 (224)
Q Consensus 207 ~~~~~~~i~~~l~~ 220 (224)
++.|...+..+...
T Consensus 152 ~~l~~~l~~~~~~~ 165 (191)
T cd04112 152 ELAFTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666665555443
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=178.84 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=119.7
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEE--Ee--CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 58 LGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL--QK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 58 ~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
+|++|+|||||++++..+.|.. .+.+|++...... .. ....+.+|||+|+++++.++..+++++|++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~--~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC
Confidence 6999999999999999988877 6778887655443 33 3479999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHH
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVE 213 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~ 213 (224)
+++++..+..|+..+.... .+.|+++|+||+|+.......+..+.. .... +.|++|||++|.|+++.|...
T Consensus 79 ~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~~~-----~~~~--~~~~e~SAk~~~~v~~~F~~l 149 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSITFH-----RKKN--LQYYDISAKSNYNFEKPFLWL 149 (200)
T ss_pred ChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHHHH-----HHcC--CEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999888887653 579999999999986532211111111 1123 389999999999997777776
Q ss_pred HHHHHH
Q psy12173 214 AEQAMY 219 (224)
Q Consensus 214 i~~~l~ 219 (224)
+...+.
T Consensus 150 ~~~i~~ 155 (200)
T smart00176 150 ARKLIG 155 (200)
T ss_pred HHHHHh
Confidence 666544
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=176.45 Aligned_cols=162 Identities=19% Similarity=0.238 Sum_probs=128.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
.+.+||+++|++|+|||||++++....+.. .+.+|++... ..+..++ ..+.+|||+|++.+...+..+++.+|+
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~--~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~ 81 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 456899999999999999999999998877 5566666443 3445544 678899999999999988889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++..+..|+..+..... .+.|+++++||+|+.+. ...++..+..+. . +++++++||+++
T Consensus 82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~e~Sa~~~ 153 (210)
T PLN03108 82 ALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----H--GLIFMEASAKTA 153 (210)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccCCCHHHHHHHHHH-----c--CCEEEEEeCCCC
Confidence 9999999999999999888887755432 57899999999999764 344444443321 1 238999999999
Q ss_pred CccccchHHHHHHHHHHh
Q psy12173 204 LHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~~ 221 (224)
.|+++.|...+..++.+.
T Consensus 154 ~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 154 QNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999888888887776654
|
|
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=174.75 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC---CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG---EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.++.+.. .+.+|.+..+. .+... ...+.+|||||++++...+..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 78 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPE--EYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLI 78 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC--CCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEE
Confidence 489999999999999999999999877 66677664433 23333 3689999999999999998889999999999
Q ss_pred EEECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCC------CHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 129 VVDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGAL------SAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 129 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|+|+++++++++... |+..+... ..+.|+++|+||.|+.... ..++..+..... ... ++++|||+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~----~~~--~~~e~Sa~ 150 (187)
T cd04132 79 CYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQ----GAF--AYLECSAK 150 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHc----CCc--EEEEccCC
Confidence 999999999999865 55555433 2578999999999996532 233333322110 111 79999999
Q ss_pred CCCccccchHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~ 219 (224)
+|.|+++.|...+..++.
T Consensus 151 ~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 151 TMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999997777766666554
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-26 Score=169.84 Aligned_cols=153 Identities=18% Similarity=0.260 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.+.. ...++.+. ....+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE--DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998777 45555543 333344443 678999999999999988889999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++.++..|+..+.... .++.|+++++||.|+.+. ...++....... .. ++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~--~~~~~~Sa~~~~~i 150 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQE-----NG--LLFLETSALTGENV 150 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----cC--CEEEEEECCCCCCH
Confidence 999999999999999888775543 267899999999999653 333443333321 12 38999999999999
Q ss_pred ccchHHHHH
Q psy12173 207 LHVSVVEAE 215 (224)
Q Consensus 207 ~~~~~~~i~ 215 (224)
++.|...+.
T Consensus 151 ~~~~~~~~~ 159 (161)
T cd04113 151 EEAFLKCAR 159 (161)
T ss_pred HHHHHHHHH
Confidence 665554443
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-26 Score=171.10 Aligned_cols=156 Identities=42% Similarity=0.717 Sum_probs=130.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.+..+. .+.+|.+++...+...+..+.+||+||+..+...+..+++.+|++++|+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~---~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS---HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc---ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 4689999999999999999999987653 3567788888888888899999999999998888888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++..++.....++..+.......++|+++++||+|+.+....+++.+.++......+.+ +++++||++|+|+++.+
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTW--HIQACSAKTGEGLQEGM 167 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeE--EEEEeECCCCCCHHHHH
Confidence 9999888888888888877654445799999999999987766777877777665554555 78999999999995544
Q ss_pred H
Q psy12173 211 V 211 (224)
Q Consensus 211 ~ 211 (224)
.
T Consensus 168 ~ 168 (173)
T cd04155 168 N 168 (173)
T ss_pred H
Confidence 3
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-26 Score=171.37 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=118.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHH-HHHHhhccCCCEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVR-RFWNTYFEDTDLL 126 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~-~~~~~~~~~~d~i 126 (224)
.++|+++|++|+|||||++++..+.++. .+.++.+.. ...+.+++ ..+.+||++|+++++ ..+..+++++|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPE--RTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--ccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEE
Confidence 4799999999999999999999988876 556666643 33455544 789999999999987 4678889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCC--
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPS-- 202 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-- 202 (224)
++|+|+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..+..+ .++++|++|||++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~e~Sa~~~~ 152 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD-------AHSMPLFETSAKDPS 152 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH-------HcCCcEEEEeccCCc
Confidence 9999999999999999988888765444679999999999986542 2222222221 1124899999999
Q ss_pred -CCccccchHHHH
Q psy12173 203 -NLHHLHVSVVEA 214 (224)
Q Consensus 203 -~~gv~~~~~~~i 214 (224)
+.|+++.|...+
T Consensus 153 ~~~~i~~~f~~l~ 165 (170)
T cd04115 153 ENDHVEAIFMTLA 165 (170)
T ss_pred CCCCHHHHHHHHH
Confidence 778855555444
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-26 Score=176.89 Aligned_cols=159 Identities=19% Similarity=0.232 Sum_probs=123.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.+||+++|++|+|||||++++....+.. .+.+|.+... ..+..++ ..+.+||++|++++...+..+++.+++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~--~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL--ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 467899999999999999999999998876 5567766443 4455544 689999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+.. ..++....... . .++|+++||++|
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-----~--~~~~~e~SA~~g 159 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHAD-SNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-----E--GLSFLETSALEA 159 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEEEEEEChhcccccCCCHHHHHHHHHH-----c--CCEEEEEeCCCC
Confidence 9999999999999999998888766532 579999999999986542 22333222211 1 238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|+++.|...+....
T Consensus 160 ~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 160 TNVEKAFQTILLEIY 174 (216)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999666655544443
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=174.98 Aligned_cols=159 Identities=17% Similarity=0.236 Sum_probs=117.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHH--------HHHHhhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVR--------RFWNTYF 120 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~--------~~~~~~~ 120 (224)
+||+++|++|+|||||++++..+.|.. .+.||++... ..+.+++ ..+.+|||||.+.+. ......+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~--~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~ 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE--EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL 78 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc--ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh
Confidence 489999999999999999999999877 5677765332 3444555 678899999965321 1233457
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcC--CCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEE
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQ--RLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
+.+|++|+|||++++++++....|+..+.... ...++|+++|+||+|+... ...++..+... +.++|+|+
T Consensus 79 ~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~ 152 (198)
T cd04142 79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR------KSWKCGYL 152 (198)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH------HhcCCcEE
Confidence 89999999999999999999988888887653 1357999999999999654 22222222111 12345999
Q ss_pred EeecCCCCccccchHHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+|||++|.|+++.|...+..++.
T Consensus 153 e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 153 ECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred EecCCCCCCHHHHHHHHHHHhhc
Confidence 99999999997777776666554
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=167.90 Aligned_cols=153 Identities=20% Similarity=0.289 Sum_probs=118.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.||+++|++++|||||++++.+..+.. .+.++.+ +....+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN--QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 389999999999999999999998877 4455555 3444455544 579999999999999999899999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++.....|+..+..... .+.|+++++||+|+... ...++.....+. . +++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~~v 150 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE-----L--NAMFIETSAKAGHNV 150 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHHH-----h--CCEEEEEeCCCCCCH
Confidence 9999999999999999998876532 36999999999999543 233333333321 1 238999999999999
Q ss_pred ccchHHHHHH
Q psy12173 207 LHVSVVEAEQ 216 (224)
Q Consensus 207 ~~~~~~~i~~ 216 (224)
++....+.+
T Consensus 151 -~~l~~~i~~ 159 (161)
T cd01861 151 -KELFRKIAS 159 (161)
T ss_pred -HHHHHHHHH
Confidence 444444443
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=164.07 Aligned_cols=163 Identities=19% Similarity=0.279 Sum_probs=133.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+||+++|+.|+|||+|+++++.+-|++ ....|++ |.++.+.++ .+++.+|||.|+++++++.+.+++++++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfpp--gqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCC--CCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 467899999999999999999999999999 6666665 566666664 4889999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
+|+|+|++-..+|+-+-+|+.++-++.+ .++--|+|+||.|+.+. ..++++.+.+.. .+.+ .|+++||+...
T Consensus 83 lilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qigeefs~----~qdm--yfletsakea~ 155 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIGEEFSE----AQDM--YFLETSAKEAD 155 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHHHHHHH----hhhh--hhhhhcccchh
Confidence 9999999999999999999999988754 45667999999999765 223333333211 1333 79999999999
Q ss_pred ccccchHHHHHHHHHHh
Q psy12173 205 HHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 205 gv~~~~~~~i~~~l~~~ 221 (224)
|++..|.+.+.+.+...
T Consensus 156 nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 156 NVEKLFLDLACRLISEA 172 (213)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99888888777765543
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=179.29 Aligned_cols=155 Identities=15% Similarity=0.232 Sum_probs=122.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|.. .+.+|++ +....+..++ ..+.+|||+|++.+...+..++..+|++|+|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 489999999999999999999998877 6677775 3444455544 6788999999999988888888999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcC--------CCCCCcEEEEEeCCCCCC--CCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQ--------RLSTVPILVIANKQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~--------~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
||+++.++|+++..|+..+.... ...++|+++|+||+|+.. ....+++.+.+... . .+.++++|
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~--~~~~~evS 152 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----E--NCAYFEVS 152 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----C--CCEEEEEe
Confidence 99999999999999888886532 224789999999999974 34555655554321 1 23899999
Q ss_pred cCCCCccccchHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~ 216 (224)
|++|.|+++.|. .+.+
T Consensus 153 Aktg~gI~elf~-~L~~ 168 (247)
T cd04143 153 AKKNSNLDEMFR-ALFS 168 (247)
T ss_pred CCCCCCHHHHHH-HHHH
Confidence 999999955554 4443
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=167.79 Aligned_cols=154 Identities=23% Similarity=0.310 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.+..+.. ...++.+.. ...+..++ ..+.+||+||++.+......+++++|++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE--QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEE
Confidence 489999999999999999999988766 555555543 33445544 688999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++....|+..+..... .++|+++++||+|+... ...++..+..+. .. ++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~-----~~--~~~~e~Sa~~~~~i 150 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAEE-----HG--LPFFETSAKTNTNV 150 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHHH-----cC--CeEEEEeCCCCCCH
Confidence 9999999999999888888766543 47999999999998753 334444333221 12 38999999999999
Q ss_pred ccchHHHHHH
Q psy12173 207 LHVSVVEAEQ 216 (224)
Q Consensus 207 ~~~~~~~i~~ 216 (224)
++.+...+.+
T Consensus 151 ~~l~~~i~~~ 160 (164)
T smart00175 151 EEAFEELARE 160 (164)
T ss_pred HHHHHHHHHH
Confidence 5555544433
|
Rab GTPases are implicated in vesicle trafficking. |
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=165.49 Aligned_cols=165 Identities=19% Similarity=0.281 Sum_probs=133.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEe---CCeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQK---GEYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.+.+++.++|+.-+|||||++.++.++|.+ ...||+|.+... +.. ..+++.+|||+|+++++++...+++++-
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfae--lsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAE--LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccc--cCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 367899999999999999999999999999 778888854332 333 2489999999999999999999999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCC-CcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLST-VPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
++++|+|+++.+||+.+..|+.+.......+. .-+.+|++|+|+... ...+|.++...- .++ .|+++||+
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~-----hgM--~FVETSak 156 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAAS-----HGM--AFVETSAK 156 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHh-----cCc--eEEEeccc
Confidence 99999999999999999999998776654334 446788999999764 334443333321 333 89999999
Q ss_pred CCCccccchHHHHHHHHHHhhc
Q psy12173 202 SNLHHLHVSVVEAEQAMYALSQ 223 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~~~~ 223 (224)
+|.||++.|....+++..++.|
T Consensus 157 ~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 157 NGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred CCCcHHHHHHHHHHHHHHHHhc
Confidence 9999988888887777776654
|
|
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=172.99 Aligned_cols=160 Identities=17% Similarity=0.218 Sum_probs=115.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
|+++|++|+|||||++++..+.|.. .+.++...... .+..++ ..+.+|||||++++...+..+++++|++|+|+|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 78 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFS 78 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEE
Confidence 5899999999999999999999877 55666543332 333433 579999999999999888888999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcC-------cccccCcccceeEEEeecCC
Q psy12173 132 SADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALD-------LSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 132 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++++++++.+.. |+..+.... ++.|+++|+||+|+..... .+++.+.-. ...+......+++++|||++
T Consensus 79 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 156 (174)
T smart00174 79 VDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALT 156 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCC
Confidence 999999999865 666555432 5899999999999975321 111100000 00000011112899999999
Q ss_pred CCccccchHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAM 218 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l 218 (224)
|.|+++.|...+..++
T Consensus 157 ~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 157 QEGVREVFEEAIRAAL 172 (174)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999777776666554
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-26 Score=170.48 Aligned_cols=154 Identities=21% Similarity=0.180 Sum_probs=117.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS-LSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~-~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.+.+||+++|++|+|||||++++.++.|. . .+.||++.. ...+..++ ..+.+||++|++.+...+..+++++|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~--~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d 79 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLN--AYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACD 79 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcc--cCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCC
Confidence 35789999999999999999999999987 6 667777643 33455544 67899999999999888888899999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-----CHHHHHhhcCcccccCcccceeEEEee
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-----SAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
++++|+|++++++++....|+..+... .++|+++|+||+|+.+.. ..+++.+.++. . .++++|
T Consensus 80 ~~llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~--~~~~~S 147 (169)
T cd01892 80 VACLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------P--PPLHFS 147 (169)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCC-------C--CCEEEE
Confidence 999999999998998887777765322 479999999999996542 12333333321 0 468999
Q ss_pred cCCCCccccchHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~ 217 (224)
|++|.|+++.|...+..+
T Consensus 148 a~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 148 SKLGDSSNELFTKLATAA 165 (169)
T ss_pred eccCccHHHHHHHHHHHh
Confidence 999999965555444433
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=167.41 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCceeEE--EEEe---CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNIT--ILQK---GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~--~~~~~~~~~~t~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+||+++|++|||||||++++..+ .|+. .+.+|.+.... .+.. ....+.+|||||++.+..++..+++.+|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPK--NYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc--cCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCE
Confidence 48999999999999999999865 4555 67777765443 2332 34899999999999999988899999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+.... .+.|+++|+||+|+.+.. ...+...... ..+++++++||++|
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~ 149 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQ-------ANQLKFFKTSALRG 149 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHH-------HcCCeEEEEeCCCC
Confidence 999999999999998888888776653 468999999999996542 2222111111 11238999999999
Q ss_pred CccccchHHHH
Q psy12173 204 LHHLHVSVVEA 214 (224)
Q Consensus 204 ~gv~~~~~~~i 214 (224)
.|+++.+...+
T Consensus 150 ~gi~~l~~~l~ 160 (164)
T cd04101 150 VGYEEPFESLA 160 (164)
T ss_pred CChHHHHHHHH
Confidence 99955554433
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=167.33 Aligned_cols=160 Identities=22% Similarity=0.284 Sum_probs=121.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.+..+.. ...++.+.. ...+...+ ..+.+||+||++.+...+..+++++|++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEE
Confidence 489999999999999999999998776 555665543 33344444 677899999999999999899999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCC---CCCCcEEEEEeCCCCCC--CCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQR---LSTVPILVIANKQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|+|+++++++++...|...+..... ..++|+++|+||+|+.. ....++.....+.. .. ++++++||++|
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~--~~~~~~Sa~~~ 152 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----GN--IPYFETSAKEA 152 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----CC--ceEEEEECCCC
Confidence 9999999998888877776655432 34789999999999973 23444444333211 11 38999999999
Q ss_pred CccccchHHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~ 220 (224)
.|+++.+...+..++.+
T Consensus 153 ~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 153 INVEQAFETIARKALEQ 169 (172)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99966666555555554
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=166.40 Aligned_cols=153 Identities=22% Similarity=0.264 Sum_probs=120.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++.++.+.. ...++.+. ....+.++ +..+.+||+||++++...+..+++++|+++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 78 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE--NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE
Confidence 3699999999999999999999999776 45666653 33444444 478999999999999998888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|+++++++.....|+..+..... .+.|+++++||.|+.+. ...++.....+. .. ++++++||++|.|
T Consensus 79 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~--~~~~~~Sa~~~~~ 150 (163)
T cd01860 79 VVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----NG--LLFFETSAKTGEN 150 (163)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----cC--CEEEEEECCCCCC
Confidence 99999999999999999888877643 67899999999998743 234443333321 11 3899999999999
Q ss_pred cccchHHHH
Q psy12173 206 HLHVSVVEA 214 (224)
Q Consensus 206 v~~~~~~~i 214 (224)
+++.+...+
T Consensus 151 v~~l~~~l~ 159 (163)
T cd01860 151 VNELFTEIA 159 (163)
T ss_pred HHHHHHHHH
Confidence 955544433
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=165.64 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++....+.. ...++.+... ..+... ...+.+||+||++.+......+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP--DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence 489999999999999999999988766 4555555433 333343 3789999999999999888888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
|+|++++++++....|+..+.......+.|+++++||+|+... ...++..+.... . +++++++||++|.|++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~gi~ 151 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK-----H--NMLFIETSAKTRDGVQ 151 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH-----c--CCEEEEEecCCCCCHH
Confidence 9999999999998888887776655568999999999999743 333333333221 1 2389999999999995
Q ss_pred cchHHH
Q psy12173 208 HVSVVE 213 (224)
Q Consensus 208 ~~~~~~ 213 (224)
+.+...
T Consensus 152 ~~~~~~ 157 (161)
T cd01863 152 QAFEEL 157 (161)
T ss_pred HHHHHH
Confidence 554433
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=169.50 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=120.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.+.. .+.+|.+... ..+..++ ..+.+|||||++++..++..+++.++++++|
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE--SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 689999999999999999999998876 6667766332 3344443 6889999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccc-eeEEEeecCCCCcc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHR-IKLIATQAPSNLHH 206 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv 206 (224)
+|++++++++....|...+.......++|+++++||.|+.... ..++.....+ .++ ++++++||++|.|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~~SA~~~~~i 152 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ-------QWGNVPFYETSARKRTNV 152 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH-------HcCCceEEEeeCCCCCCH
Confidence 9999999999998888887765444679999999999996542 2222222211 111 38999999999999
Q ss_pred ccchHHHHHH
Q psy12173 207 LHVSVVEAEQ 216 (224)
Q Consensus 207 ~~~~~~~i~~ 216 (224)
++.|...+.+
T Consensus 153 ~~~f~~i~~~ 162 (168)
T cd04177 153 DEVFIDLVRQ 162 (168)
T ss_pred HHHHHHHHHH
Confidence 6655544433
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=166.20 Aligned_cols=154 Identities=21% Similarity=0.269 Sum_probs=119.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++....+.. .+.++++..... ...+ ...+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcc--ccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence 489999999999999999999988776 556665533322 3333 46899999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|+++++++.....|+..+.......++|+++|+||+|+... ....+.....+ .++++++++||++|.|++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~gi~ 151 (164)
T cd04139 79 FSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-------QWGVPYVETSAKTRQNVE 151 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-------HhCCeEEEeeCCCCCCHH
Confidence 999999999999999999888654468999999999999762 22333222221 112389999999999996
Q ss_pred cchHHHHH
Q psy12173 208 HVSVVEAE 215 (224)
Q Consensus 208 ~~~~~~i~ 215 (224)
+.+...+.
T Consensus 152 ~l~~~l~~ 159 (164)
T cd04139 152 KAFYDLVR 159 (164)
T ss_pred HHHHHHHH
Confidence 65554443
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-26 Score=159.91 Aligned_cols=156 Identities=35% Similarity=0.632 Sum_probs=145.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.+.+.++|-.+||||||++.+..+.+.+ +..||.|++...++...+.+.+||.||+.+++++|..++++++++++|+|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~e--dmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD 97 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD 97 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchh--hhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence 4689999999999999999999988888 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
+++++.++..+..+..++......++|+++.+||.|+++..+-.++-+.+++..+..+.. .++.+||+...|+ +...
T Consensus 98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREv--cC~siScke~~Ni-d~~~ 174 (186)
T KOG0075|consen 98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREV--CCFSISCKEKVNI-DITL 174 (186)
T ss_pred cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceE--EEEEEEEcCCccH-HHHH
Confidence 999999999999999999998888999999999999999999999999999988877776 8999999999998 4433
Q ss_pred H
Q psy12173 212 V 212 (224)
Q Consensus 212 ~ 212 (224)
+
T Consensus 175 ~ 175 (186)
T KOG0075|consen 175 D 175 (186)
T ss_pred H
Confidence 3
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=168.07 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
.||+++|++|+|||||++++..+.|+. .+.++.+........ ....+.+|||||.+.+...+..++..+|++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 389999999999999999999998866 333333322222222 4578999999999988887777789999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCc--ccccCcccceeEEEeecCCCCcccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDL--SSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|++++++++.+..+|...+.... .+.|+++|+||+|+.+........+.... .... .. .++++|||++|.|+++
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~~~e~Sa~~~~~v~~ 154 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFR-EI--ETCVECSAKTLINVSE 154 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHh-cc--cEEEEeccccccCHHH
Confidence 99999999998655544444322 47999999999999765432111111100 0000 11 2799999999999955
Q ss_pred chHHHHHHHH
Q psy12173 209 VSVVEAEQAM 218 (224)
Q Consensus 209 ~~~~~i~~~l 218 (224)
.|. .+.+..
T Consensus 155 lf~-~~~~~~ 163 (166)
T cd01893 155 VFY-YAQKAV 163 (166)
T ss_pred HHH-HHHHHh
Confidence 444 555444
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-25 Score=169.08 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=114.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++..+.|.. .+.++.... ...+..++ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 78 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPE--EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 78 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence 489999999999999999999998876 555665422 22344443 5688999999999998888889999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH-HHhhcCcc-------cccCcccceeEEEeecC
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE-VGVALDLS-------SISSRQHRIKLIATQAP 201 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~Sa~ 201 (224)
+|++++++++.....|...+... ..+.|+++++||+|+.+.....+ ..+..... ........++|++|||+
T Consensus 79 ~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 79 FSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 99999999998865444443332 36899999999999865421111 10000000 00001111279999999
Q ss_pred CCCccccchHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQA 217 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~ 217 (224)
+|.|+++.|...+..+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999977776665543
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=167.42 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=117.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++..+.|.. ..+.+|.+.. ...+..++ ..+.+||++|++++...+..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 489999999999999999999988763 1355666643 33455554 567899999999999888888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC------CHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL------SAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
|+|++++++++....|+..+.... .+.|+++|+||+|+.... ..++..+... ..+++++++||++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~ 150 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-------EIKAQHFETSSKT 150 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHH-------HcCCeEEEEeCCC
Confidence 999999999999888888776542 478999999999986431 1122222211 1123899999999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+++.+...+..++.
T Consensus 151 ~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 151 GQNVDELFQKVAEDFVS 167 (193)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99996655555544443
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=169.89 Aligned_cols=160 Identities=21% Similarity=0.229 Sum_probs=119.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+||+++|++|+|||||++++....+. .+.++.+... ..+.+++ ..+.+|||||++++...+..+++.+|+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE---DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 35689999999999999999999998763 3456665433 3444443 678999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc-CCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGD-QRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+++|+|+++++++.+....|...... ....+.|+++|+||+|+.... ..++....... . .+.|+++||++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-----~--~~~~~e~SAk~ 161 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE-----H--GCLFLECSAKT 161 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----c--CCEEEEEeCCC
Confidence 99999999999999988765554432 223468999999999997542 22332222211 1 23899999999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+++.|...+.+++.
T Consensus 162 ~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 162 RENVEQCFEELALKIME 178 (211)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99996666655555544
|
|
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-27 Score=167.40 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=130.4
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC-----------CeEEEEEEcCCchhHHHH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG-----------EYTLNIFELGGQENVRRF 115 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~-----------~~~~~l~D~~G~~~~~~~ 115 (224)
.++.+|.+.+|+.|+||||++.+++.++|.. ...+|+++.+ +.+-++ .+.+.+|||+|+++++++
T Consensus 6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~--qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNT--QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred HHHHHHHHhhccCCCCceEEEEEecCCcccc--eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 3567899999999999999999999999887 6666666433 333331 278999999999999999
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHH---HHhhcCcccccCcc
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEE---VGVALDLSSISSRQ 190 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~---~~~~~~~~~~~~~~ 190 (224)
...+++.+-+++++||+++..||-+..+|+.++..+.-+.+..+|+++||+|+.+... .++ +.+.+.+
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl------- 156 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL------- 156 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC-------
Confidence 9999999999999999999999999999999998887778899999999999976522 222 3333333
Q ss_pred cceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 191 HRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
||+++||-+|.||++...-.+...+.+.
T Consensus 157 ---PYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 157 ---PYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred ---CeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999766655555555544
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=165.79 Aligned_cols=153 Identities=15% Similarity=0.219 Sum_probs=113.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+|++++|++|+|||||++++.++.|.. .+.+|.. .....+..++ ..+.+|||||++++...+..+++++|++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v 78 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPT--EYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence 489999999999999999999988877 5666653 2222344443 6788999999999999888889999999999
Q ss_pred EECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--------------CHHHHHhhcCcccccCccccee
Q psy12173 130 VDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGAL--------------SAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 130 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
+|++++++++... .|+..+... ..+.|+++++||.|+.... ..++.....+ ....+.
T Consensus 79 ~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~------~~~~~~ 150 (173)
T cd04130 79 FSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE------KIGACE 150 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH------HhCCCe
Confidence 9999999999885 456555443 2478999999999986431 1112211111 111138
Q ss_pred EEEeecCCCCccccchHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
|++|||++|.|+++.|...+.
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999776655543
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=161.31 Aligned_cols=150 Identities=20% Similarity=0.263 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++....+.. ...++.. +....+... ...+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE--KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEE
Confidence 489999999999999999999988766 4444443 333334433 3579999999999999988888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++....|+..+..... .++|+++++||+|+.+. ...+++.+..+. . +++++++||++|+|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-----~--~~~~~~~s~~~~~gi 150 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKS-----V--GAKHFETSAKTGKGI 150 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHH-----c--CCEEEEEeCCCCCCH
Confidence 9999999999998888887766543 37899999999999754 233444333321 1 238999999999999
Q ss_pred ccchHH
Q psy12173 207 LHVSVV 212 (224)
Q Consensus 207 ~~~~~~ 212 (224)
++.+..
T Consensus 151 ~~~~~~ 156 (162)
T cd04123 151 EELFLS 156 (162)
T ss_pred HHHHHH
Confidence 555544
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=170.05 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=107.9
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCCCC---CCCCCCCCce-e-EE-----------EEEeCCeEEEEEEcCCchhHHH
Q psy12173 52 QRKILILGLDNSGKSTLIK-QISSGNTSL---SHNLKPTEGF-N-IT-----------ILQKGEYTLNIFELGGQENVRR 114 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~-~l~~~~~~~---~~~~~~t~~~-~-~~-----------~~~~~~~~~~l~D~~G~~~~~~ 114 (224)
.+||+++|+.|+|||||+. ++..+.|.. ...+.||++. . +. .+......+.+|||+|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3699999999999999996 665543321 1156677742 1 11 11123478999999999863
Q ss_pred HHHhhccCCCEEEEEEECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCC---------------------C
Q psy12173 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGA---------------------L 172 (224)
Q Consensus 115 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~---------------------~ 172 (224)
....+++++|++|+|||+++++|++++.. |+..+.... .+.|+++|+||+|+.+. .
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 44567899999999999999999999975 666654432 47899999999998642 1
Q ss_pred CHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHH
Q psy12173 173 SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
..++..+.. +..+++|++|||++|.||++.|...+.
T Consensus 158 ~~~e~~~~a-------~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 158 PPETGRAVA-------KELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred CHHHHHHHH-------HHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 223332222 122348999999999999777765553
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-25 Score=166.12 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=112.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhH-HHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENV-RRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~-~~~~~~~~~~~d~ii~v 129 (224)
||+++|++|+|||||++++..+.|.. .+.++.+.. ...+..++ ..+.+||+||++.+ ......+++.+|++++|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIG--EYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccc--ccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 58999999999999999999888765 556665422 23334443 57899999999853 33455678999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC-c
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL-H 205 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-g 205 (224)
+|++++++++.+..|+..+..... ..++|+++|+||+|+.+. ...++.....+. . +++|++|||++|. |
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~e~Sa~~~~~~ 151 (165)
T cd04146 79 YSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASE-----L--GCLFFEVSAAEDYDG 151 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHH-----c--CCEEEEeCCCCCchh
Confidence 999999999999888777665432 357999999999998643 233333222211 1 1389999999995 8
Q ss_pred cccchHHHHHH
Q psy12173 206 HLHVSVVEAEQ 216 (224)
Q Consensus 206 v~~~~~~~i~~ 216 (224)
+++.|...+.+
T Consensus 152 v~~~f~~l~~~ 162 (165)
T cd04146 152 VHSVFHELCRE 162 (165)
T ss_pred HHHHHHHHHHH
Confidence 97776655543
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=170.11 Aligned_cols=154 Identities=22% Similarity=0.198 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCC--ceeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhcc-CCCEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTS-LSHNLKPTE--GFNITILQK--GEYTLNIFELGGQENVRRFWNTYFE-DTDLL 126 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~-~~~~~~~t~--~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~i 126 (224)
+||+++|++|+|||||++++..+.+. . .+.++. ++....+.+ ....+.+|||||++.+ ....++. ++|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDH--AYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCcc--CcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEE
Confidence 48999999999999999999888775 4 445555 344445555 4478999999999832 2334556 89999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|||++++++++...+|+..+.......++|+++|+||+|+.+.. ..++..+... .. +++|+++||++|.
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~-----~~--~~~~~e~SA~~~~ 149 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAV-----VF--DCKFIETSAGLQH 149 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHH-----Hc--CCeEEEecCCCCC
Confidence 9999999999999999988888775444679999999999996542 2232222211 11 2389999999999
Q ss_pred ccccchHHHHHHH
Q psy12173 205 HHLHVSVVEAEQA 217 (224)
Q Consensus 205 gv~~~~~~~i~~~ 217 (224)
|+++.|...+...
T Consensus 150 gv~~l~~~l~~~~ 162 (221)
T cd04148 150 NVDELLEGIVRQI 162 (221)
T ss_pred CHHHHHHHHHHHH
Confidence 9966555544443
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-25 Score=165.36 Aligned_cols=159 Identities=18% Similarity=0.231 Sum_probs=113.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.||+++|++|+|||||++++..+.|.. .+.+|.+... ..+..++ ..+.+|||+|++.+...+...+.++|++++|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 489999999999999999999998877 6667766443 3444443 6789999999999988877788999999999
Q ss_pred EECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCccc-------ccCcccceeEEEeec
Q psy12173 130 VDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSS-------ISSRQHRIKLIATQA 200 (224)
Q Consensus 130 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~Sa 200 (224)
+|+++.++++.... |+..+... ..+.|+++|+||.|+.+... .+++........ ........++++|||
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 157 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSA 157 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecc
Confidence 99999999988865 44444432 24789999999999865421 111110000000 000001127999999
Q ss_pred CCCCccccchHHHHH
Q psy12173 201 PSNLHHLHVSVVEAE 215 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~ 215 (224)
++|.|+++.|...+.
T Consensus 158 ~~~~~v~~lf~~l~~ 172 (175)
T cd01870 158 KTKEGVREVFEMATR 172 (175)
T ss_pred ccCcCHHHHHHHHHH
Confidence 999999666654443
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=168.45 Aligned_cols=155 Identities=19% Similarity=0.266 Sum_probs=119.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
||+++|++|+|||||++++..+.+.. .+.+|+. .....+.+.+ ..+.+||+||+..+...+..++..+|++++|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP--KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 68999999999999999999998776 5555553 4444555555 68899999999999988888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
|++++++++....|+..+.......++|+++++||.|+... ...++..+... ..++++++++||++|.|++
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~------~~~~~~~~~~Sa~~g~gv~ 152 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE------LDWNCGFVETSAKDNENVL 152 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH------hhcCCcEEEecCCCCCCHH
Confidence 99999999999988888877654457999999999999653 11222222111 1122379999999999996
Q ss_pred cchHHHHHH
Q psy12173 208 HVSVVEAEQ 216 (224)
Q Consensus 208 ~~~~~~i~~ 216 (224)
+.+...+..
T Consensus 153 ~l~~~l~~~ 161 (198)
T cd04147 153 EVFKELLRQ 161 (198)
T ss_pred HHHHHHHHH
Confidence 555544443
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=153.15 Aligned_cols=163 Identities=19% Similarity=0.233 Sum_probs=137.1
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEe--CCeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQK--GEYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
..+.+|..++|+-|+|||+|+.+++.++|-. +.+.|++..+. .+.+ ...++.+|||.|+++++.....+++++.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfma--dcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhh--cCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 3567899999999999999999999999988 88888875443 3444 4589999999999999999999999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+.+.|+|++.+.+...+..|+.......+ ++..+++++||.|+... ...++.++..+.... .|+++||++
T Consensus 86 galmvyditrrstynhlsswl~dar~ltn-pnt~i~lignkadle~qrdv~yeeak~faeengl-------~fle~sakt 157 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL-------MFLEASAKT 157 (215)
T ss_pred ceeEEEEehhhhhhhhHHHHHhhhhccCC-CceEEEEecchhhhhhcccCcHHHHHHHHhhcCe-------EEEEecccc
Confidence 99999999999999999999988776544 56789999999999654 455666555543222 899999999
Q ss_pred CCccccchHHHHHHHHHHh
Q psy12173 203 NLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~~~ 221 (224)
|.|+++.|.+.+.++.++.
T Consensus 158 g~nvedafle~akkiyqni 176 (215)
T KOG0097|consen 158 GQNVEDAFLETAKKIYQNI 176 (215)
T ss_pred cCcHHHHHHHHHHHHHHhh
Confidence 9999999999998888764
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=159.31 Aligned_cols=149 Identities=22% Similarity=0.299 Sum_probs=119.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++++|||||++++.+..+.. .+.+|.+........ ....+.+||+||+..+......+++++|++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE--NYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC--ccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence 489999999999999999999999877 556666655544333 34789999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC--CCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP--GALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++....|+..+..... .+.|+++++||+|+. .....++..+..+. +.++++++||++|.|+
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~~~i 150 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-------NGLLFFETSAKTGENV 150 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHHH-------cCCeEEEEecCCCCCH
Confidence 9999999899999888888776532 469999999999995 33455555554432 2238999999999999
Q ss_pred ccchH
Q psy12173 207 LHVSV 211 (224)
Q Consensus 207 ~~~~~ 211 (224)
++.+.
T Consensus 151 ~~~~~ 155 (159)
T cd00154 151 EELFQ 155 (159)
T ss_pred HHHHH
Confidence 54443
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=163.31 Aligned_cols=156 Identities=22% Similarity=0.267 Sum_probs=120.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.||+++|++|+|||||++++....+.. .+.+|++.. ...+...+ ..+.+||+||++++...+..++..++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE--SYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILV 79 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc--ccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEE
Confidence 589999999999999999999988765 556666532 33444443 5679999999999998888899999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|+++.++++....++..+.......+.|+++++||+|+... ...++.....+ .+.++++++||++|.|++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~gv~ 152 (180)
T cd04137 80 YSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-------SWGAAFLESSARENENVE 152 (180)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-------HcCCeEEEEeCCCCCCHH
Confidence 999999999999999988887654467899999999998643 23333322221 111389999999999995
Q ss_pred cchHHHHHHH
Q psy12173 208 HVSVVEAEQA 217 (224)
Q Consensus 208 ~~~~~~i~~~ 217 (224)
+.+...+..+
T Consensus 153 ~l~~~l~~~~ 162 (180)
T cd04137 153 EAFELLIEEI 162 (180)
T ss_pred HHHHHHHHHH
Confidence 5555444443
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-24 Score=159.88 Aligned_cols=155 Identities=19% Similarity=0.278 Sum_probs=116.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..++|+++|++|+|||||++++..+.+.. ...+|.+ +....+.+++ ..+.+||+||++.+...+..++..+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999887766 4555554 4444455555 6789999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
++|+|+++++++.....|+..+..... .+.|+++++||+|+.+... ..+..+.+.. ... +++++|||++|.|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~----~~~--~~~~~~Sa~~~~g 156 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYAN-NKVITILVGNKIDLAERREVSQQRAEEFSD----AQD--MYYLETSAKESDN 156 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccccCHHHHHHHHH----HcC--CeEEEeeCCCCCC
Confidence 999999999999888888776654322 4689999999999975422 1222222211 011 2899999999999
Q ss_pred cccchHHHH
Q psy12173 206 HLHVSVVEA 214 (224)
Q Consensus 206 v~~~~~~~i 214 (224)
+++.+....
T Consensus 157 v~~l~~~i~ 165 (169)
T cd04114 157 VEKLFLDLA 165 (169)
T ss_pred HHHHHHHHH
Confidence 955554433
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=166.98 Aligned_cols=160 Identities=24% Similarity=0.267 Sum_probs=133.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF-NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..+||+++|.+|+|||+|..++..+.|.. .+.||++. ....+..++ ..+.++||+|++++..+...++..+|+++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~--~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~ 79 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVE--DYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFL 79 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccccc--ccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEE
Confidence 35799999999999999999999999999 88898874 344455544 78899999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+||++++..||+.+..++..+.........|+++|+||+|+.+. ...++.... ...|.|+|+|+||+.+.+
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l-------a~~~~~~f~E~Sak~~~~ 152 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL-------ARSWGCAFIETSAKLNYN 152 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH-------HHhcCCcEEEeeccCCcC
Confidence 99999999999999999999966655567899999999999873 444443333 245667999999999999
Q ss_pred cccchHHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAMY 219 (224)
Q Consensus 206 v~~~~~~~i~~~l~ 219 (224)
+++.|...+..+-.
T Consensus 153 v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 153 VDEVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHHHh
Confidence 98777766665443
|
|
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-26 Score=162.23 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=131.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
...+|++++|+.=+|||||+-|+..++|...+...-...|..+.++.. ..++.+|||+|+++|-.+-..+++++|+++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 467999999999999999999999999887332222223555555553 478999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|||+++.+||+.+..|..++.+-.. ..+.+++|+||+|+.++ ...++.....+. . ++.|+++||+.+.|
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YAes-----v--GA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYAES-----V--GALYMETSAKDNVG 162 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHHHh-----h--chhheecccccccC
Confidence 99999999999999999999876532 45789999999999765 233333333322 1 22899999999999
Q ss_pred cccchHHHHHHHHHHhhc
Q psy12173 206 HLHVSVVEAEQAMYALSQ 223 (224)
Q Consensus 206 v~~~~~~~i~~~l~~~~~ 223 (224)
|.+.|.....+++++++|
T Consensus 163 i~elFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 998888888888887654
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-24 Score=166.38 Aligned_cols=160 Identities=18% Similarity=0.252 Sum_probs=124.5
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
....+||+++|++|||||||++++..+.+.. .+.+|.+.......+ ....+.+|||+|++++...+..++.+++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEK--KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 3567899999999999999999998888777 677888866655433 3489999999999999988888899999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++++|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.....+..+..+ ...+ .++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~~-----~~~~--~~~e~Sa~~~~ 154 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFHR-----KKNL--QYYDISAKSNY 154 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHHH-----HcCC--EEEEEeCCCCC
Confidence 9999999999999999998888876543 5789999999999865422122222111 1222 89999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++.|...++..+.
T Consensus 155 ~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 155 NFEKPFLWLARRLTN 169 (215)
T ss_pred CHHHHHHHHHHHHhh
Confidence 997666665554443
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=156.39 Aligned_cols=151 Identities=23% Similarity=0.287 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-eEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF-NITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
||+++|++|+|||||++++....+.. .+.++.+. ....+... ...+.+||+||++.+......+++.+|++++|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 78 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVE--EYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY 78 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--CcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence 68999999999999999999887666 55565552 23334444 468899999999999998888999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|+++++++.+...++..+.........|+++++||+|+... ...++....... . +++++++||++|.|+++
T Consensus 79 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~--~~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 79 SITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE-----W--GCPFIETSAKDNINIDE 151 (160)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH-----c--CCcEEEeccCCCCCHHH
Confidence 99999999999999988887654457999999999999763 223333333221 1 13899999999999955
Q ss_pred chHHH
Q psy12173 209 VSVVE 213 (224)
Q Consensus 209 ~~~~~ 213 (224)
.+...
T Consensus 152 l~~~l 156 (160)
T cd00876 152 VFKLL 156 (160)
T ss_pred HHHHH
Confidence 54433
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=156.46 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=105.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh------H---HHHHHhhccCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN------V---RRFWNTYFEDT 123 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~------~---~~~~~~~~~~~ 123 (224)
++|+++|++|+|||||++++.+..+.......+|.+.....+..++..+.+|||||+.. . ..........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 47999999999999999999998865422233455666666666778999999999732 0 01111112346
Q ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKL--PVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|++++|+|+++.+++ +....++..+.... .+.|+++|+||+|+.+.....+..+..+ ...+ ++++|||+
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~-----~~~~--~~~~~Sa~ 151 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEEEE-----LEGE--EVLKISTL 151 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHhhh-----hccC--ceEEEEec
Confidence 899999999987653 55556666654332 4799999999999976533332222111 1233 89999999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|+ +++...+.+.+
T Consensus 152 ~~~gi-~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGV-DEVKNKACELL 167 (168)
T ss_pred ccCCH-HHHHHHHHHHh
Confidence 99999 44445555443
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=160.91 Aligned_cols=117 Identities=19% Similarity=0.290 Sum_probs=99.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEe-------CCeEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQK-------GEYTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~-------~~~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
+||+++|++++|||||++++..+.|.. .+.+|++... ..+.+ ....+.+|||+|++++..++..+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~--~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG--RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcC
Confidence 489999999999999999999999887 6778887433 33443 236899999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcC------------------CCCCCcEEEEEeCCCCCCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQ------------------RLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~piilv~nK~Dl~~~ 171 (224)
|++|+|+|+++++|++++..|+..+.... ...+.|+++|+||.|+.++
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 99999999999999999999999887631 1246899999999999654
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-24 Score=159.43 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=109.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++.++.+.. .+.++..... ..+.. ....+.+||+||++.+.......++.+|++++|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPT--EYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC 78 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEE
Confidence 589999999999999999999998755 4445443222 22333 346899999999998887777778999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH-------------HHHHhhcCcccccCcccceeEE
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA-------------EEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
+|+++++++......|...+.... .+.|+++|+||+|+.+.... ++..+.... ... .+++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~--~~~~ 151 (171)
T cd00157 79 FSVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE----IGA--IGYM 151 (171)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH----hCC--eEEE
Confidence 999999898887665555444322 47999999999999765422 111111111 011 2899
Q ss_pred EeecCCCCccccchH
Q psy12173 197 ATQAPSNLHHLHVSV 211 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~ 211 (224)
++||++|.|+++.+.
T Consensus 152 ~~Sa~~~~gi~~l~~ 166 (171)
T cd00157 152 ECSALTQEGVKEVFE 166 (171)
T ss_pred EeecCCCCCHHHHHH
Confidence 999999999955544
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=164.46 Aligned_cols=166 Identities=17% Similarity=0.225 Sum_probs=127.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC-C--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG-E--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~-~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..+|++++|++++|||+|+..+..+.|+. .+.||+--++. .+.++ + +.+.+|||.|+++|.+++...+.++|++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~--~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPE--EYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcc--cccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 45799999999999999999999999999 88888763332 34443 3 7899999999999999887789999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH-HHHHhhcCccc--------ccCcccceeEEE
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA-EEVGVALDLSS--------ISSRQHRIKLIA 197 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~ 197 (224)
++||++.+++|++++...|..-+.+.+ ++.|+|+|++|.||+++... +++... .... ..++.....|+|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~-~~~~Vt~~~g~~lA~~iga~~y~E 158 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQ-GLEPVTYEQGLELAKEIGAVKYLE 158 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhc-cCCcccHHHHHHHHHHhCcceeee
Confidence 999999999999997666655555443 89999999999999854211 111110 1100 011222348999
Q ss_pred eecCCCCccccchHHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
|||+++.|+.+.|..++..++..
T Consensus 159 cSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 159 CSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred ehhhhhCCcHHHHHHHHHHHhcc
Confidence 99999999988888888887764
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=158.93 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=113.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.||+++|++|+|||||++++..+.+.. .+.+|....+ ..+..++ ..+.+||++|++.+.......+.++|++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 489999999999999999999888766 5555554332 2344443 6689999999998877666678999999999
Q ss_pred EECCCCCCHHHHHH-HHHHHHhcCCCCCCcEEEEEeCCCCCCCCC------------HHHHHhhcCcccccCcccceeEE
Q psy12173 130 VDSADPSKLPVAAM-ELKNLLGDQRLSTVPILVIANKQDVPGALS------------AEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 130 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
+|+++.++++.... |+..+.... .+.|+++|+||.|+.+... .++..... .....++|+
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 151 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVA------KEIGAKKYM 151 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHH------HHhCCcEEE
Confidence 99999999999875 555554432 4799999999999854211 11111111 111113799
Q ss_pred EeecCCCCccccchHHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+|||++|.|+++.|...+.+++.
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHhc
Confidence 99999999997776666655544
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=147.32 Aligned_cols=154 Identities=36% Similarity=0.654 Sum_probs=142.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+.++|+++|-.++|||||+++|.+.. +. ...||.||+...+..++ .++.+||.+|+...+..|..++.+.|++|||
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED-~~--hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSED-PR--HLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCC-hh--hccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 46899999999999999999999877 44 67899999999999866 9999999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|.++...|++..+.+.+++...+...+|+.+.+||.|+......+++...+++.....+.| .+.+|||.+++|+.+.
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRsw--hIq~csals~eg~~dg 170 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSW--HIQECSALSLEGSTDG 170 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceE--EeeeCccccccCccCc
Confidence 99999999999999999999988878899999999999999999999999999998888998 9999999999998543
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-23 Score=153.25 Aligned_cols=148 Identities=19% Similarity=0.121 Sum_probs=98.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCCCCceeEEEEEeC-CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN---TSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~---~~~~~~~~~t~~~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+.|+++|++++|||||+++|.+.. +........|.+.....+.+. +..+.+|||||++++......+++.+|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999999643 222112233445555555555 7899999999999998777777889999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
|+|+++.. .......+..+ ... ...|+++++||+|+.+... .+++.+.++... .. ..+++++||++|.
T Consensus 81 V~d~~~~~-~~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~Sa~~~~ 152 (164)
T cd04171 81 VVAADEGI-MPQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LA--DAPIFPVSAVTGE 152 (164)
T ss_pred EEECCCCc-cHhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cC--CCcEEEEeCCCCc
Confidence 99998731 22222222222 221 2349999999999975421 123333332110 01 2389999999999
Q ss_pred cccc
Q psy12173 205 HHLH 208 (224)
Q Consensus 205 gv~~ 208 (224)
|+++
T Consensus 153 ~v~~ 156 (164)
T cd04171 153 GIEE 156 (164)
T ss_pred CHHH
Confidence 9944
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=168.27 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=132.4
Q ss_pred hhcCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCc
Q psy12173 31 RRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQ 109 (224)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~ 109 (224)
++...+..+.++.....+-.....|+++|.|++|||||+++++..+....+...+|..++...+.+ +...+.+||+||.
T Consensus 137 p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGl 216 (335)
T PRK12299 137 PRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGL 216 (335)
T ss_pred CccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCc
Confidence 344455666777777777788899999999999999999999987644333445677778887877 5578999999996
Q ss_pred hh-------HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCCCCHH--HHHh
Q psy12173 110 EN-------VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGALSAE--EVGV 179 (224)
Q Consensus 110 ~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~--~~~~ 179 (224)
.+ ....+..+++.++++++|+|+++.++++....|..++.... ...++|+++|+||+|+.+..... +...
T Consensus 217 i~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~ 296 (335)
T PRK12299 217 IEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAAL 296 (335)
T ss_pred cCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHH
Confidence 42 23333445778999999999999888888888887776542 23478999999999997653221 1111
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
... ...+ +++++||++++|+ +++...+.+.+.+
T Consensus 297 ~~~-----~~~~--~i~~iSAktg~GI-~eL~~~L~~~l~~ 329 (335)
T PRK12299 297 ELA-----ALGG--PVFLISAVTGEGL-DELLRALWELLEE 329 (335)
T ss_pred HHH-----hcCC--CEEEEEcCCCCCH-HHHHHHHHHHHHh
Confidence 111 1123 8999999999999 5566666666554
|
|
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-24 Score=153.96 Aligned_cols=177 Identities=26% Similarity=0.472 Sum_probs=147.0
Q ss_pred hhhhhHHHHHhhcCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCC-----CCCCCCCCCCceeEEEEE
Q psy12173 21 TYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNT-----SLSHNLKPTEGFNITILQ 95 (224)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~-----~~~~~~~~t~~~~~~~~~ 95 (224)
..++|.||+++ ..+.|+++|..++|||||+.+...... .......+|.+.+..++.
T Consensus 5 ~~gl~~~~~~K-------------------e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~ 65 (197)
T KOG0076|consen 5 MSGLYKYMFKK-------------------EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE 65 (197)
T ss_pred HHHHHHHHhhh-------------------hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee
Confidence 35677788777 347899999999999999998876442 111355678999999999
Q ss_pred eCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH
Q psy12173 96 KGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE 175 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 175 (224)
.....+.+||..|++..+++|..++..+|++|+++|++++++++.....+..+..+....+.|+++.+||.|+.+...+.
T Consensus 66 v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~ 145 (197)
T KOG0076|consen 66 VCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAA 145 (197)
T ss_pred eccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999988887777899999999999999998899
Q ss_pred HHHhhcCc-ccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 176 EVGVALDL-SSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 176 ~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++...++. +....+.+ ++.++||.+|+||+ +-+..+.+.+.
T Consensus 146 El~~~~~~~e~~~~rd~--~~~pvSal~gegv~-egi~w~v~~~~ 187 (197)
T KOG0076|consen 146 ELDGVFGLAELIPRRDN--PFQPVSALTGEGVK-EGIEWLVKKLE 187 (197)
T ss_pred HHHHHhhhhhhcCCccC--ccccchhhhcccHH-HHHHHHHHHHh
Confidence 98888874 22333554 99999999999994 44444444443
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=156.33 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=108.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCch---------hHHHHHHhh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQE---------NVRRFWNTY 119 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~---------~~~~~~~~~ 119 (224)
...++|+++|++|||||||++++.+..+...+...+|.+.....+.+.+ ..+.+|||||.. .+.... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 3468999999999999999999999875543445566666666666655 489999999972 222222 23
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
+..+|++++|+|++++.+......+...+ ......++|+++|+||+|+.+..... ... .... ++++++|
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~-----~~~~--~~~~~~S 186 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ERL-----EAGR--PDAVFIS 186 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HHh-----hcCC--CceEEEE
Confidence 67899999999999988877655444433 33233468999999999997653222 111 1122 3899999
Q ss_pred cCCCCccccchHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~ 216 (224)
|++|.|+ +++...+.+
T Consensus 187 a~~~~gi-~~l~~~L~~ 202 (204)
T cd01878 187 AKTGEGL-DELLEAIEE 202 (204)
T ss_pred cCCCCCH-HHHHHHHHh
Confidence 9999999 444445443
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-24 Score=149.90 Aligned_cols=149 Identities=21% Similarity=0.353 Sum_probs=119.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 57 ILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 57 v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
++|+.++|||+|+-|+..+.|...+ ..+|++..+. .+..+ .+++.+|||.||+++++....+++.+|+.++++|+
T Consensus 2 llgds~~gktcllir~kdgafl~~~-fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGN-FISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred ccccCccCceEEEEEeccCceecCc-eeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 6899999999999999998876522 3356664443 34443 48899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-----CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-----LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
.+..||++...|+.++..+.. ..+.+.+++||+|+.++ .+.+.+.+.+++ ||.++||++|.|++
T Consensus 81 ankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i----------pfmetsaktg~nvd 149 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI----------PFMETSAKTGFNVD 149 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCC----------CceeccccccccHh
Confidence 999999999999999877643 46788999999999664 233445555554 99999999999997
Q ss_pred cchHHHHHHH
Q psy12173 208 HVSVVEAEQA 217 (224)
Q Consensus 208 ~~~~~~i~~~ 217 (224)
-.|...+.+.
T Consensus 150 ~af~~ia~~l 159 (192)
T KOG0083|consen 150 LAFLAIAEEL 159 (192)
T ss_pred HHHHHHHHHH
Confidence 7766544443
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=151.99 Aligned_cols=151 Identities=19% Similarity=0.151 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCe-EEEEEEcCCchh-------HHHHHHhhccCCCE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEY-TLNIFELGGQEN-------VRRFWNTYFEDTDL 125 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~D~~G~~~-------~~~~~~~~~~~~d~ 125 (224)
+|+++|.+|+|||||++++.+..........+|.......+..++. .+.+|||||+.. ....+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999976643222223344555555666665 999999999631 11122223557999
Q ss_pred EEEEEECCCC-CCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCCCCHHHHHh-hcCcccccCcccceeEEEeecCC
Q psy12173 126 LVFVVDSADP-SKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGALSAEEVGV-ALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 126 ii~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+++|+|++++ ++++....|...+..... ..++|+++|+||+|+.+.....+..+ ..... ..++++++||++
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~ 155 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL------WGKPVFPISALT 155 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC------CCCCEEEEecCC
Confidence 9999999999 788888877777755421 24689999999999976543333222 22110 123899999999
Q ss_pred CCccccch
Q psy12173 203 NLHHLHVS 210 (224)
Q Consensus 203 ~~gv~~~~ 210 (224)
+.|+++.+
T Consensus 156 ~~gi~~l~ 163 (170)
T cd01898 156 GEGLDELL 163 (170)
T ss_pred CCCHHHHH
Confidence 99994444
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=150.08 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC---CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG---EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
.|+++|++|+|||||+++|....+........|.......+..+ +..+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 68999999999999999999888665322233434444444443 678999999999999988888889999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhc---CcccccCcccceeEEEeecCCCCccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVAL---DLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
|+++..... ....+..+ .. .++|+++|+||+|+.... .+.....+ ...........++++++||++|.|+
T Consensus 82 d~~~~~~~~-~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi- 154 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI- 154 (168)
T ss_pred ECCCCccHH-HHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCH-
Confidence 999864322 22222222 22 478999999999987542 22222211 1110000111238999999999999
Q ss_pred cchHHHHHHHHH
Q psy12173 208 HVSVVEAEQAMY 219 (224)
Q Consensus 208 ~~~~~~i~~~l~ 219 (224)
+++.+.+.+...
T Consensus 155 ~~l~~~l~~~~~ 166 (168)
T cd01887 155 DDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHhhh
Confidence 556656655443
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-23 Score=153.08 Aligned_cols=143 Identities=23% Similarity=0.297 Sum_probs=105.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh------HHHHHHhh--ccCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN------VRRFWNTY--FEDTD 124 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~------~~~~~~~~--~~~~d 124 (224)
++|+++|.|++|||||+|+|++.+....+....|.+.....+...+..+.++|+||.-+ .+.....+ .++.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 48999999999999999999999976666667788888888999999999999999321 12222233 36899
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
++++|+|+++. +.......++.. .++|+++++||+|+... .+.+.+.+.++. +++++||
T Consensus 81 ~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~----------pvi~~sa 143 (156)
T PF02421_consen 81 LIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV----------PVIPVSA 143 (156)
T ss_dssp EEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-----------EEEEBT
T ss_pred EEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC----------CEEEEEe
Confidence 99999999984 333344444444 38999999999998653 456677777654 9999999
Q ss_pred CCCCccccchHHH
Q psy12173 201 PSNLHHLHVSVVE 213 (224)
Q Consensus 201 ~~~~gv~~~~~~~ 213 (224)
++++|+ +++.++
T Consensus 144 ~~~~g~-~~L~~~ 155 (156)
T PF02421_consen 144 RTGEGI-DELKDA 155 (156)
T ss_dssp TTTBTH-HHHHHH
T ss_pred CCCcCH-HHHHhh
Confidence 999999 444443
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=163.55 Aligned_cols=124 Identities=19% Similarity=0.320 Sum_probs=104.2
Q ss_pred ccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC---------------CeEEEEEEcCC
Q psy12173 46 KVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG---------------EYTLNIFELGG 108 (224)
Q Consensus 46 ~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~---------------~~~~~l~D~~G 108 (224)
.......+||+++|+.|+|||||++++..+.|.. .+.+|++... ..+.++ .+.+.+|||+|
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~--~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG 92 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIA--RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG 92 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCccc--ccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC
Confidence 3445678999999999999999999999998877 6778887543 344432 36799999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCC-----------CCCCcEEEEEeCCCCCCC
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQR-----------LSTVPILVIANKQDVPGA 171 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~ 171 (224)
+++++.++..+++++|++|+|+|+++.++++++..|+..+..... ..++|++||+||+|+...
T Consensus 93 qErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 93 HERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999999998876521 135899999999999654
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=163.75 Aligned_cols=178 Identities=18% Similarity=0.187 Sum_probs=126.7
Q ss_pred cCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchh
Q psy12173 33 QSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQEN 111 (224)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~ 111 (224)
...+..+.++.....+-.....|+++|.+++|||||+++++..+....+...+|..++...+.+.+ ..+.+||+||..+
T Consensus 138 ~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~ 217 (329)
T TIGR02729 138 FATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIE 217 (329)
T ss_pred ccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCccc
Confidence 344455666677777777889999999999999999999998764433334566777777777766 8999999999742
Q ss_pred -------HHHHHHhhccCCCEEEEEEECCCC---CCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCCCCHHHHHhh
Q psy12173 112 -------VRRFWNTYFEDTDLLVFVVDSADP---SKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGALSAEEVGVA 180 (224)
Q Consensus 112 -------~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~ 180 (224)
....+..+++.++++++|+|+++. ++++....|..++.... ....+|+++|+||+|+.+....+++.+.
T Consensus 218 ~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~ 297 (329)
T TIGR02729 218 GASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKE 297 (329)
T ss_pred CCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHH
Confidence 222333446789999999999986 56777777766665432 2347899999999999765333333333
Q ss_pred cCcccccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 181 LDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
+.. ... .+++++||++++|+ +++...+.+.
T Consensus 298 l~~----~~~--~~vi~iSAktg~GI-~eL~~~I~~~ 327 (329)
T TIGR02729 298 LKK----ALG--KPVFPISALTGEGL-DELLYALAEL 327 (329)
T ss_pred HHH----HcC--CcEEEEEccCCcCH-HHHHHHHHHH
Confidence 211 011 28999999999999 5555555544
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=163.70 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=110.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCc---------hhHHHHHHhhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQ---------ENVRRFWNTYF 120 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~---------~~~~~~~~~~~ 120 (224)
..++|+++|.+|+|||||+|+|++..+...+...+|.++....+.+ ++..+.+|||+|. +.++..+. .+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HH
Confidence 4589999999999999999999998755444567788888888887 5689999999997 23444333 47
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
..+|++++|+|++++.+......+. .++......++|+++|+||+|+.+.. +...... ... +++++||
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~--~~i~iSA 334 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYP--EAVFVSA 334 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCC--CEEEEEc
Confidence 8999999999999998776654433 33333223478999999999996542 2221111 112 6899999
Q ss_pred CCCCccccchHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~ 216 (224)
++|.|+ +.+...+.+
T Consensus 335 ktg~GI-~eL~~~I~~ 349 (351)
T TIGR03156 335 KTGEGL-DLLLEAIAE 349 (351)
T ss_pred cCCCCH-HHHHHHHHh
Confidence 999999 555555544
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=149.37 Aligned_cols=151 Identities=21% Similarity=0.214 Sum_probs=102.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCCCCCCC--------------CCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS--GNTSLSHN--------------LKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~--~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
..+|+++|++++|||||++++.. +.|..... ...+.......+.+++..+.+|||||++++...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 35899999999999999999997 44433110 111222233445667899999999999999999
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCcccccCcccc
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSISSRQHR 192 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~ 192 (224)
+..+++.+|++++|+|+++. .......++..... .++|+++|+||+|+.+.... ++..+.+..........+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 88999999999999999885 23333333443332 37899999999999754222 222332211011112223
Q ss_pred eeEEEeecCCCCccc
Q psy12173 193 IKLIATQAPSNLHHL 207 (224)
Q Consensus 193 ~~~~~~Sa~~~~gv~ 207 (224)
++++++||++|.|+.
T Consensus 157 ~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 157 FPVLYASAKNGWASL 171 (194)
T ss_pred cCEEEeehhcccccc
Confidence 489999999999984
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=146.81 Aligned_cols=151 Identities=20% Similarity=0.220 Sum_probs=101.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--CCC---CCCCCCCC------c--ee--EEEE-----EeCCeEEEEEEcCCchhH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN--TSL---SHNLKPTE------G--FN--ITIL-----QKGEYTLNIFELGGQENV 112 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~--~~~---~~~~~~t~------~--~~--~~~~-----~~~~~~~~l~D~~G~~~~ 112 (224)
.+|+++|++++|||||++++.+.. +.. ...+.++. + +. .... ...+..+.+|||||++++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 379999999999999999998742 110 00122211 1 11 1112 224578999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCcccccCc
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSISSR 189 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~ 189 (224)
...+..+++.+|++|+|+|++++.+......+. .... .++|+++|+||+|+.+.... +++.+.++. .
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~ 150 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----D 150 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----C
Confidence 998888999999999999999876665554443 2222 36899999999998653221 223332221 1
Q ss_pred ccceeEEEeecCCCCccccchHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
.. .++++||++|.|+++ +...+.+
T Consensus 151 ~~--~~~~~Sa~~g~gi~~-l~~~l~~ 174 (179)
T cd01890 151 PS--EAILVSAKTGLGVED-LLEAIVE 174 (179)
T ss_pred cc--cEEEeeccCCCCHHH-HHHHHHh
Confidence 12 589999999999954 4444443
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=142.51 Aligned_cols=161 Identities=34% Similarity=0.593 Sum_probs=144.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
...+++++|--|+|||+++.++...+.. ...||.+++...+.+++.++.+||+.|+.+.+..|..++.+.|++|+|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv---ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV---TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc---ccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence 4579999999999999999999877633 5679999999999999999999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|.+|.+........+..++++..+.+..+++++||.|........|....+++...+.+.| .++++||.+|+|++ +.
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~--~Iv~tSA~kg~Gld-~~ 170 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIW--QIVKTSAVKGEGLD-PA 170 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhhee--EEEeeccccccCCc-HH
Confidence 9999999999999999999988888899999999999999888999999999988888888 99999999999994 44
Q ss_pred HHHHHHH
Q psy12173 211 VVEAEQA 217 (224)
Q Consensus 211 ~~~i~~~ 217 (224)
.+-+.+.
T Consensus 171 ~DWL~~~ 177 (182)
T KOG0072|consen 171 MDWLQRP 177 (182)
T ss_pred HHHHHHH
Confidence 4344333
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=141.37 Aligned_cols=148 Identities=23% Similarity=0.328 Sum_probs=109.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|.+|+|||||++++....++. .+.++++ +....+..++ ..+.+||+||+.++...+....+.++.++.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFIT--EYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcC--cCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 699999999999999999999998666 3444444 3333355666 789999999999999888888899999999
Q ss_pred EEECCCC-CCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADP-SKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
++|.... .++.... .+...+..... .+.|+++++||.|+......++....+... .. .+++++||++|.|+
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~--~~~~~~sa~~~~gv 152 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----NG--EPIIPLSAETGKNI 152 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----cC--CceEEeecCCCCCH
Confidence 9999877 6666655 45554444432 278999999999997653333333333221 12 27999999999999
Q ss_pred ccc
Q psy12173 207 LHV 209 (224)
Q Consensus 207 ~~~ 209 (224)
++.
T Consensus 153 ~~~ 155 (161)
T TIGR00231 153 DSA 155 (161)
T ss_pred HHH
Confidence 443
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=163.13 Aligned_cols=179 Identities=20% Similarity=0.223 Sum_probs=125.9
Q ss_pred hcCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC-CeEEEEEEcCCch
Q psy12173 32 RQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110 (224)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~D~~G~~ 110 (224)
+...+..+.++.....+-.....|+++|.+++|||||+++++..+....+....|..++...+.+. +..+.+||+||..
T Consensus 138 ~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGli 217 (424)
T PRK12297 138 RIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLI 217 (424)
T ss_pred CcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCc
Confidence 334444555666666777778899999999999999999999877444334456777777777776 6899999999964
Q ss_pred h-------HHHHHHhhccCCCEEEEEEECCCC---CCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCCC-CHHHHH
Q psy12173 111 N-------VRRFWNTYFEDTDLLVFVVDSADP---SKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGAL-SAEEVG 178 (224)
Q Consensus 111 ~-------~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~-~~~~~~ 178 (224)
+ ....+..+++.++++++|+|+++. ++++....+..++.... ...++|+++|+||+|+.+.. ..+++.
T Consensus 218 ega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~ 297 (424)
T PRK12297 218 EGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFK 297 (424)
T ss_pred ccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHH
Confidence 2 112223346679999999999865 56676666666665532 23478999999999985331 112222
Q ss_pred hhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 179 VALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
+.+. + +++++||+++.|+ +++...+.+.+.+.
T Consensus 298 ~~l~--------~--~i~~iSA~tgeGI-~eL~~~L~~~l~~~ 329 (424)
T PRK12297 298 EKLG--------P--KVFPISALTGQGL-DELLYAVAELLEET 329 (424)
T ss_pred HHhC--------C--cEEEEeCCCCCCH-HHHHHHHHHHHHhC
Confidence 2222 2 8999999999999 66667777766554
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=164.80 Aligned_cols=162 Identities=16% Similarity=0.187 Sum_probs=110.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCc----------hhHHHHH-Hh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQ----------ENVRRFW-NT 118 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~-~~ 118 (224)
..++|+++|.+++|||||+++|++..+... .....|.++....+.+++..+.+|||||. +.+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 458999999999999999999998875322 22333444555667778888999999995 3333332 34
Q ss_pred hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+++.+|++++|+|++++.+..... ++..+.. .++|+++|+||+|+.+........+.+... .. ....++++++
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~-l~-~~~~~~~~~~ 362 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRE-LA-QVPWAPRVNI 362 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHh-cc-cCCCCCEEEE
Confidence 578999999999999987776653 3443332 478999999999997542222222222110 11 1112389999
Q ss_pred ecCCCCccccchHHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
||++|.|+ +++...+.+.+.+
T Consensus 363 SAk~g~gv-~~lf~~i~~~~~~ 383 (472)
T PRK03003 363 SAKTGRAV-DKLVPALETALES 383 (472)
T ss_pred ECCCCCCH-HHHHHHHHHHHHH
Confidence 99999999 5566666666654
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=150.89 Aligned_cols=166 Identities=22% Similarity=0.240 Sum_probs=118.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe--C--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK--G--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++..+.+.. .+.+|.+........ . ...+.+|||+|+++++..+..++.++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPE--GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcc--cCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 4899999999999999999999999888 677776644443332 2 477999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH-HHhhcC----cc-----cccCcccceeEEE
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE-VGVALD----LS-----SISSRQHRIKLIA 197 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~----~~-----~~~~~~~~~~~~~ 197 (224)
+|+|..+..+..+....|...+........|+++++||+|+........ +..... .. ..........+++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 9999999666666555555444433224699999999999987633211 111100 00 0000111124899
Q ss_pred eecC--CCCccccchHHHHHHHHH
Q psy12173 198 TQAP--SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 198 ~Sa~--~~~gv~~~~~~~i~~~l~ 219 (224)
+|++ .+.|+++.+...+.....
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHH
Confidence 9999 999997666666655543
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-21 Score=143.20 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=100.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH------HHHhhc--cCCCEEEE
Q psy12173 57 ILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR------FWNTYF--EDTDLLVF 128 (224)
Q Consensus 57 v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~~~d~ii~ 128 (224)
++|.+|+|||||++++.+..+........|.......+.+++..+.+|||||+..+.. ....++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999988654422333455566667777788999999999876442 234444 49999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH-HHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE-EVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
|+|+.+++... .++..+.. .++|+++++||+|+.+..... +....... . +++++++||++|.|+
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~-----~--~~~~~~iSa~~~~~~- 145 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSEL-----L--GVPVVPTSARKGEGI- 145 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHh-----h--CCCeEEEEccCCCCH-
Confidence 99999865432 33333332 368999999999997652221 11111110 1 128999999999999
Q ss_pred cchHHHHHHHH
Q psy12173 208 HVSVVEAEQAM 218 (224)
Q Consensus 208 ~~~~~~i~~~l 218 (224)
+.+...+.++.
T Consensus 146 ~~l~~~l~~~~ 156 (158)
T cd01879 146 DELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=164.16 Aligned_cols=180 Identities=21% Similarity=0.187 Sum_probs=126.1
Q ss_pred cCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh-
Q psy12173 33 QSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN- 111 (224)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~- 111 (224)
.+....+.++.....+-.....|+++|.|++|||||+++|+..+....+...+|..++...+...+..+.+||+||...
T Consensus 140 ~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg 219 (500)
T PRK12296 140 FALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG 219 (500)
T ss_pred cccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence 3445566677777777788899999999999999999999987755444556777888888888889999999999532
Q ss_pred ---HH---HHHHhhccCCCEEEEEEECCCC----CCHHHHHHHHHHHHhcC----------CCCCCcEEEEEeCCCCCCC
Q psy12173 112 ---VR---RFWNTYFEDTDLLVFVVDSADP----SKLPVAAMELKNLLGDQ----------RLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ---~~---~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~piilv~nK~Dl~~~ 171 (224)
.. .....+++.+|++++|+|+++. +.+.....+..++.... ....+|+++|+||+|+.+.
T Consensus 220 as~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 220 ASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred cchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 11 1223346789999999999863 34544444433443321 2347899999999999754
Q ss_pred CCHH-HHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 172 LSAE-EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 172 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
.... .+.+.+. ...+ +++++||+++.|+ +++...+.+.+..
T Consensus 300 ~el~e~l~~~l~-----~~g~--~Vf~ISA~tgeGL-dEL~~~L~ell~~ 341 (500)
T PRK12296 300 RELAEFVRPELE-----ARGW--PVFEVSAASREGL-RELSFALAELVEE 341 (500)
T ss_pred HHHHHHHHHHHH-----HcCC--eEEEEECCCCCCH-HHHHHHHHHHHHh
Confidence 2221 2222221 1234 8999999999999 6666666666654
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-21 Score=153.18 Aligned_cols=152 Identities=20% Similarity=0.137 Sum_probs=102.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCCeEEEEEEcCCchhH--------HHHHHhhccCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGEYTLNIFELGGQENV--------RRFWNTYFEDTD 124 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~~d 124 (224)
+|+++|.+|+|||||+|+|++.++...+....|+...... ...++.++.+|||||.... .......++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999998865433334444433333 3345678999999996532 112344578999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH-HHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE-EVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+..... ...+..+.. .. .+++++||++|
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~----~~--~~v~~iSA~~g 149 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILE----DF--KDIVPISALTG 149 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhc----CC--CceEEEecCCC
Confidence 999999999876654 333333333 478999999999996432111 111211111 11 27999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|+ +++.+.+.+.+
T Consensus 150 ~gi-~~L~~~l~~~l 163 (270)
T TIGR00436 150 DNT-SFLAAFIEVHL 163 (270)
T ss_pred CCH-HHHHHHHHHhC
Confidence 999 66666666654
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=156.47 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=105.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhH--------HHHHHhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENV--------RRFWNTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~ 120 (224)
.+..+|+++|.+|+|||||+++|.+.++... ....+|.+.....+..++.++.+|||||..+. .......+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4567999999999999999999999886431 12334445555667778889999999997431 11122347
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
..+|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...+..+.+... ... ..++++||
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~--~~i~~iSA 198 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPD--SLLFPISA 198 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCC--cEEEEEec
Confidence 89999999999766 355554444444333 25677899999999654 344444443211 111 27999999
Q ss_pred CCCCccccchHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~ 216 (224)
++|.|+ +++...+.+
T Consensus 199 ktg~gv-~eL~~~L~~ 213 (339)
T PRK15494 199 LSGKNI-DGLLEYITS 213 (339)
T ss_pred cCccCH-HHHHHHHHH
Confidence 999999 444444443
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-21 Score=141.41 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=89.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCch-----hHHHHHHhhccCCCEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQE-----NVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~ii~ 128 (224)
||+++|++|+|||||++++.+..+. +.+|.+ +.+.. .+|||||+. .++.... .++++|++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKKTQA-----VEYND---GAIDTPGEYVENRRLYSALIV-TAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccccee-----EEEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEE
Confidence 7999999999999999999987642 233332 22322 789999973 3444433 4899999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
|+|++++.++.. ..|. .. ...|+++++||+|+.+. ...++..+..+.. ... +++++||++|.|++
T Consensus 69 v~d~~~~~s~~~-~~~~-~~------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~--~~~~~Sa~~~~gi~ 134 (142)
T TIGR02528 69 VQSATDPESRFP-PGFA-SI------FVKPVIGLVTKIDLAEADVDIERAKELLETA----GAE--PIFEISSVDEQGLE 134 (142)
T ss_pred EecCCCCCcCCC-hhHH-Hh------ccCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCC--cEEEEecCCCCCHH
Confidence 999999988754 2222 22 13499999999999653 2333333322211 111 79999999999995
Q ss_pred cch
Q psy12173 208 HVS 210 (224)
Q Consensus 208 ~~~ 210 (224)
+.|
T Consensus 135 ~l~ 137 (142)
T TIGR02528 135 ALV 137 (142)
T ss_pred HHH
Confidence 444
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=146.37 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=99.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCC-----------chhHHHHHHhh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG-----------QENVRRFWNTY 119 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~~~ 119 (224)
..++|+++|.+|+|||||++++.+..+.. ...+++......+.+. .+.+||||| ++.++..+..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRV--GKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 45799999999999999999999887654 3344444433334334 689999999 56666655444
Q ss_pred c----cCCCEEEEEEECCCCCCHH---------HHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcc
Q psy12173 120 F----EDTDLLVFVVDSADPSKLP---------VAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLS 184 (224)
Q Consensus 120 ~----~~~d~ii~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~ 184 (224)
+ ..++++++|+|.+....+. .....+...... .++|+++|+||+|+.+.. ..+++.+.++..
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 4 3567889999886542220 011222233222 479999999999996543 233444444321
Q ss_pred cccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 185 SISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 185 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
. ..+.+..+++++||++| |++ ++...+.+.+
T Consensus 161 ~-~~~~~~~~~~~~SA~~g-gi~-~l~~~l~~~~ 191 (201)
T PRK04213 161 P-PWRQWQDIIAPISAKKG-GIE-ELKEAIRKRL 191 (201)
T ss_pred c-cccccCCcEEEEecccC-CHH-HHHHHHHHhh
Confidence 1 01112226899999999 994 4445555544
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-21 Score=145.97 Aligned_cols=152 Identities=17% Similarity=0.180 Sum_probs=103.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC-CeEEEEEEcCCchhHH-------HHHHhhccCCCEEEE
Q psy12173 57 ILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQENVR-------RFWNTYFEDTDLLVF 128 (224)
Q Consensus 57 v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~ii~ 128 (224)
++|++|+|||||++++.+..+.......+|.+.....+.++ +..+.+|||||..... ......++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999987522223344556666667777 8899999999974321 122334678999999
Q ss_pred EEECCCC------CCHHHHHHHHHHHHhcCC------CCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEE
Q psy12173 129 VVDSADP------SKLPVAAMELKNLLGDQR------LSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 129 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
|+|++++ +++.....+...+..... ..+.|+++|+||+|+.......+.. ......... .+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~--~~~~ 155 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEG--AEVV 155 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCC--CCEE
Confidence 9999998 467776666666654322 1478999999999997653333221 001111122 3899
Q ss_pred EeecCCCCccccchHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEA 214 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i 214 (224)
++||+++.|+ +++.+.+
T Consensus 156 ~~Sa~~~~gl-~~l~~~l 172 (176)
T cd01881 156 PISAKTEEGL-DELIRAI 172 (176)
T ss_pred EEehhhhcCH-HHHHHHH
Confidence 9999999999 4444444
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=137.40 Aligned_cols=145 Identities=18% Similarity=0.208 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCchhHHH--------HHHhhccCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQENVRR--------FWNTYFEDT 123 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~ 123 (224)
++|+++|++|+|||||++++.+..+...... ..+..+....+..++..+.+|||||...+.. ....++..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998774321122 2233444556666788999999999654321 223457799
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|++++|+|++++.+......+.. ..++|+++++||+|+.+.... .. ..+..+++++||+++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~--~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LS--LLAGKPIIAISAKTG 142 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------cc--ccCCCceEEEECCCC
Confidence 99999999999877766543322 257999999999999765322 01 111238999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+ +++...+.+.
T Consensus 143 ~~v-~~l~~~l~~~ 155 (157)
T cd04164 143 EGL-DELKEALLEL 155 (157)
T ss_pred CCH-HHHHHHHHHh
Confidence 999 5555555543
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=160.35 Aligned_cols=154 Identities=18% Similarity=0.126 Sum_probs=104.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchh--------HHHHHHhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQEN--------VRRFWNTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~ 120 (224)
...++|+++|.+|+|||||++++++..+... .....|.+.......+.+..+.+|||||.+. +......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3457999999999999999999998764321 1222233445556677888999999999762 344456678
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+.+|++|+|+|++++.+... ..+...+.. .++|+++|+||+|+.... .+..+.... ... ..+++||
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~--~~~~~~~~~-----g~~--~~~~iSA 181 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGE--ADAAALWSL-----GLG--EPHPVSA 181 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccc--hhhHHHHhc-----CCC--CeEEEEc
Confidence 89999999999999866543 333333333 479999999999986532 111121111 111 3569999
Q ss_pred CCCCccccchHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l 218 (224)
++|.|+++.+ ..+.+.+
T Consensus 182 ~~g~gi~eL~-~~i~~~l 198 (472)
T PRK03003 182 LHGRGVGDLL-DAVLAAL 198 (472)
T ss_pred CCCCCcHHHH-HHHHhhc
Confidence 9999995544 4444433
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=142.11 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------CCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHN----------------LKPTEGFNITILQKGEYTLNIFELGGQENVRRFWN 117 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 117 (224)
+|+++|.+|+|||||++++.+........ ...+...........+..+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999877554110 11223334444555678999999999999888888
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HHHHhhcCccccc------
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EEVGVALDLSSIS------ 187 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~------ 187 (224)
.+++.+|++++|+|+.++.... ....+..+.. .+.|+++++||+|+...... +++.+.++.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 8899999999999999875433 2233333322 47999999999999864332 2233333322110
Q ss_pred -CcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 188 -SRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 188 -~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
......+++++||++|.|+ +++...+.+.+
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi-~~l~~~l~~~l 186 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGV-EELLEAIVEHL 186 (189)
T ss_pred cccCCcceEEEEecccCcCH-HHHHHHHHhhC
Confidence 0112348999999999999 55555555443
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=144.76 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=100.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC----CCCC---CCCCCCCCceeEEEEEeC--------------CeEEEEEEcCCchh
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG----NTSL---SHNLKPTEGFNITILQKG--------------EYTLNIFELGGQEN 111 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~----~~~~---~~~~~~t~~~~~~~~~~~--------------~~~~~l~D~~G~~~ 111 (224)
++|+++|++++|||||+++++.. .+.. ......|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 1111 111224445444444443 67899999999987
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HHHHhhcCcc--c
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EEVGVALDLS--S 185 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~--~ 185 (224)
+........+.+|++++|+|+.+.........+. +... .+.|+++++||+|+...... +++.+.+... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6555545567899999999999865443322221 2222 26799999999999754222 2222221100 0
Q ss_pred ccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
..... .+++++||++|.|+ +++.+.+...
T Consensus 156 ~~~~~--~~vi~iSa~~g~gi-~~L~~~l~~~ 184 (192)
T cd01889 156 TRFKN--SPIIPVSAKPGGGE-AELGKDLNNL 184 (192)
T ss_pred cCcCC--CCEEEEeccCCCCH-HHHHHHHHhc
Confidence 00122 38999999999999 5555555443
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=158.11 Aligned_cols=151 Identities=19% Similarity=0.193 Sum_probs=105.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCCeEEEEEEcCCchhHHH--------HHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGEYTLNIFELGGQENVRR--------FWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 121 (224)
..++|+++|++|+|||||+|+|++......+.+.. |.++....+.+++..+.+|||||..+... ....+++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 46899999999999999999999876432223333 33455666778889999999999854332 1235678
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++++|+|++++.+.+.. |+..+.. .++|+++|+||+|+... ..+++.+.. +++++++||+
T Consensus 282 ~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~~~----------~~~~~~vSak 344 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVSSK----------VLNSSNLSAK 344 (442)
T ss_pred hCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhhhc----------CCceEEEEEe
Confidence 99999999999998877654 5544422 37899999999999654 222221111 1278999999
Q ss_pred CCCccccchHHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~ 220 (224)
+ .|+ ++....+.+.+.+
T Consensus 345 ~-~gI-~~~~~~L~~~i~~ 361 (442)
T TIGR00450 345 Q-LKI-KALVDLLTQKINA 361 (442)
T ss_pred c-CCH-HHHHHHHHHHHHH
Confidence 8 588 4444455555543
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=145.55 Aligned_cols=160 Identities=17% Similarity=0.099 Sum_probs=99.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCCCCceeEEEEEeC---------------------------C----
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNT---SLSHNLKPTEGFNITILQKG---------------------------E---- 98 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~---~~~~~~~~t~~~~~~~~~~~---------------------------~---- 98 (224)
++|+++|+.|+|||||++.+.+... ..+.....++......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976521 11001111111111111110 2
Q ss_pred --eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH--
Q psy12173 99 --YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA-- 174 (224)
Q Consensus 99 --~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-- 174 (224)
..+.+|||||++.+.......+..+|++++|+|++++.........+..+... ...|+++++||+|+.+....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 68999999999999888777788999999999999753222223333333222 23579999999999754222
Q ss_pred --HHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 175 --EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 175 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++.+.++.. ....++++++||++|+|+ +++...+.+.+..
T Consensus 158 ~~~~i~~~~~~~----~~~~~~i~~vSA~~g~gi-~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGT----IAENAPIIPISAQLKYNI-DVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhcc----ccCCCcEEEEeCCCCCCH-HHHHHHHHHhCCC
Confidence 2222222110 011238999999999999 5555666555443
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-21 Score=146.08 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=109.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CCCCCCCCceeEEEEE--eCCeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSL------------------SHNLKPTEGFNITILQ--KGEYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~------------------~~~~~~t~~~~~~~~~--~~~~~~~l~D~~G~~ 110 (224)
+.++|+++|+.++|||||+.+|....... +.....|.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 46799999999999999999999644221 0122345556666777 788999999999999
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcC--c-cccc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALD--L-SSIS 187 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~-~~~~ 187 (224)
.+.......+..+|++|+|+|+.++-. ....+.+..+.. .++|+++++||+|+... ..++..+.+. + ....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccc-cccccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 998888888999999999999998733 223344444433 47899999999999832 1112211111 0 0001
Q ss_pred Ccc-cceeEEEeecCCCCccccchHHHHHHH
Q psy12173 188 SRQ-HRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 188 ~~~-~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
... ..++++++||++|.|+ +.+.+.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi-~~Ll~~l~~~ 185 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGI-DELLEALVEL 185 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTH-HHHHHHHHHH
T ss_pred cCccccceEEEEecCCCCCH-HHHHHHHHHh
Confidence 111 1349999999999999 6666555543
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=141.08 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=93.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCCeEEEEEEcCCch----------hHHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGEYTLNIFELGGQE----------NVRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~D~~G~~----------~~~~~~~ 117 (224)
....+|+++|++|+|||||++++.+..+.. .+.++.+.+ ......+ ..+.+|||||.. .+.....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLA--RTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcc--cccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 567899999999999999999999876433 222232221 1112222 379999999942 3333333
Q ss_pred hhcc---CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCcc
Q psy12173 118 TYFE---DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSRQ 190 (224)
Q Consensus 118 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~ 190 (224)
.+++ .++++++|+|++++-+..+. .+...+.. .++|+++++||+|+..... .+++++.++. ..
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~-----~~ 162 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK-----DA 162 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh-----cc
Confidence 4444 46899999999886443332 33333333 4789999999999975422 2333333332 12
Q ss_pred cceeEEEeecCCCCccc
Q psy12173 191 HRIKLIATQAPSNLHHL 207 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~ 207 (224)
..++++++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 22389999999999983
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=136.23 Aligned_cols=157 Identities=12% Similarity=0.105 Sum_probs=101.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCchhH----------HH-HHHhh
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQENV----------RR-FWNTY 119 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~-~~~~~ 119 (224)
.++|+++|++|+|||||++++.+..+...... ..+.......+..++..+.+|||||..+. .. .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 46899999999999999999998764321122 22333334455667788999999996432 11 11234
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEE
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (224)
++.+|++++|+|++++.+.... ..+... .. .+.|+++++||+|+.+. ...++..+.+.... . ....+++++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~-~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 154 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLI-LE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL-P-FLDYAPIVF 154 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHH-Hh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhc-c-cccCCceEE
Confidence 6799999999999998765443 222222 22 36899999999999765 23333333332111 0 111238999
Q ss_pred eecCCCCccccchHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~ 216 (224)
+||++++|+ +++...+.+
T Consensus 155 ~Sa~~~~~i-~~~~~~l~~ 172 (174)
T cd01895 155 ISALTGQGV-DKLFDAIDE 172 (174)
T ss_pred EeccCCCCH-HHHHHHHHH
Confidence 999999999 444444443
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-20 Score=158.76 Aligned_cols=148 Identities=19% Similarity=0.284 Sum_probs=108.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH--------HHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTS-LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR--------FWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 121 (224)
..++|+++|.+|+|||||+|+|++.... ..+....|.++....+..++..+.+|||||.++... ....+++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIE 293 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 4589999999999999999999987642 222333455666677778889999999999764322 1233578
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++++|+|++++.+.+.... +.. ..+.|+++|+||+|+.+..... ....+ +++++||+
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~--~~i~iSAk 353 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGK--PVIRISAK 353 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCC--ceEEEEee
Confidence 9999999999999877764432 222 2578999999999997542221 01122 79999999
Q ss_pred CCCccccchHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~ 219 (224)
+|.|+ +++...+.+.+.
T Consensus 354 tg~GI-~~L~~~L~~~l~ 370 (449)
T PRK05291 354 TGEGI-DELREAIKELAF 370 (449)
T ss_pred CCCCH-HHHHHHHHHHHh
Confidence 99999 666667766654
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=137.53 Aligned_cols=145 Identities=20% Similarity=0.185 Sum_probs=97.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCchhHHH--------HHHhhccCCCEE
Q psy12173 56 LILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQENVRR--------FWNTYFEDTDLL 126 (224)
Q Consensus 56 ~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d~i 126 (224)
+++|.+|+|||||++++.+......... ..|.+.........+..+.+|||||...... .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999998753221122 2233455556667788999999999877443 334567889999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
++|+|..++.+... .++...+.. .+.|+++|+||+|+.+.....+ ...+. .. .+++++||++|.|+
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~--~~~~~-----~~--~~~~~~Sa~~~~gv 146 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAA--EFYSL-----GF--GEPIPISAEHGRGI 146 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHH--HHHhc-----CC--CCeEEEecccCCCH
Confidence 99999987654433 233333333 3699999999999976522211 11111 11 16899999999999
Q ss_pred ccchHHHHH
Q psy12173 207 LHVSVVEAE 215 (224)
Q Consensus 207 ~~~~~~~i~ 215 (224)
+++.+.+.
T Consensus 147 -~~l~~~l~ 154 (157)
T cd01894 147 -GDLLDAIL 154 (157)
T ss_pred -HHHHHHHH
Confidence 44444443
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-20 Score=158.68 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=107.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCchhH----------HHH-HHh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQENV----------RRF-WNT 118 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~-~~~ 118 (224)
..++|+++|.+++|||||++++++......... ..|.+.....+..++..+.+|||||..+. ... ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 468999999999999999999998764322222 23334445556667789999999996432 111 134
Q ss_pred hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC-CCCHHHHHhhcCcccccCcccceeEEE
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG-ALSAEEVGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (224)
.++.+|++++|+|++++.+.... ..+..... .++|+++|+||+|+.+ ....++..+.+.... .....+++++
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~vi~ 323 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKL--PFLDFAPIVF 323 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhc--ccCCCCceEE
Confidence 57899999999999988665543 23333322 4789999999999972 222333333332111 1111248999
Q ss_pred eecCCCCccccchHHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+||++|.|+ +++.+.+.+++..
T Consensus 324 ~SA~~g~~v-~~l~~~i~~~~~~ 345 (429)
T TIGR03594 324 ISALTGQGV-DKLLDAIDEVYEN 345 (429)
T ss_pred EeCCCCCCH-HHHHHHHHHHHHH
Confidence 999999999 5555566665543
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=154.87 Aligned_cols=155 Identities=16% Similarity=0.165 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchh---------HHHHHHhhccC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQEN---------VRRFWNTYFED 122 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~---------~~~~~~~~~~~ 122 (224)
++|+++|.+|+|||||+|+|++..+...+....|.++....+.+.+ ..+.+|||+|..+ +... ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~t-l~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKAT-LQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHH-HHHhhc
Confidence 6899999999999999999998775544455677777777777755 4889999999733 2222 234689
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+|++++|+|++++.+......+ ..++......++|+++|+||+|+...... .... ... ... .++++||++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~-~~~-----~~~--~~v~ISAkt 346 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDR-DEE-----NKP--IRVWLSAQT 346 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchhH-HHHH-Hhc-----CCC--ceEEEeCCC
Confidence 9999999999998776665332 22222222247899999999999653111 1111 100 011 358899999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+ +.+...+.+.+.
T Consensus 347 G~GI-deL~e~I~~~l~ 362 (426)
T PRK11058 347 GAGI-PLLFQALTERLS 362 (426)
T ss_pred CCCH-HHHHHHHHHHhh
Confidence 9999 666666666653
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=135.75 Aligned_cols=145 Identities=20% Similarity=0.312 Sum_probs=105.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCceeEEEEEeC----CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 57 ILGLDNSGKSTLIKQISSGNT-SLSHNLKPTEGFNITILQKG----EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 57 v~G~~~sGKSsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~----~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
++|++|+|||||++++.+... .. ...+|. ......... +..+.+||+||+..+.......++.+|++++|+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~--~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE--EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYD 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc--ccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEE
Confidence 589999999999999999875 23 333343 444444332 6789999999999888877888999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHH--hhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVG--VALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.+++.+......++..........++|+++++||+|+......+... .... .....+++++|+.++.|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 78 VTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA------KELGVPYFETSAKTGENVEEL 151 (157)
T ss_pred CcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH------hhcCCcEEEEecCCCCChHHH
Confidence 99998888877764333333344689999999999997764433321 1111 111238999999999999443
Q ss_pred h
Q psy12173 210 S 210 (224)
Q Consensus 210 ~ 210 (224)
+
T Consensus 152 ~ 152 (157)
T cd00882 152 F 152 (157)
T ss_pred H
Confidence 3
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=160.36 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=109.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCe-EEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEY-TLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.+.++|+++|++++|||||++++.+..+........|.......+.+++. .+.+|||||++.|..++...+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 46689999999999999999999988766532222344444455555444 89999999999999988888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCc--ccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSR--QHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++.. .+..+.+..... .++|+++++||+|+.+. ..+++.+.+........ ...++++++||++|.|+
T Consensus 165 VVda~dgv~-~qT~e~i~~~~~----~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVM-PQTIEAISHAKA----ANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCC-HhHHHHHHHHHH----cCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 999987632 222233332211 47899999999999653 33444444321111111 11237999999999999
Q ss_pred ccchHH
Q psy12173 207 LHVSVV 212 (224)
Q Consensus 207 ~~~~~~ 212 (224)
++.+..
T Consensus 239 ~eLl~~ 244 (587)
T TIGR00487 239 DELLDM 244 (587)
T ss_pred HHHHHh
Confidence 654443
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-20 Score=141.93 Aligned_cols=122 Identities=25% Similarity=0.386 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCC-CEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDT-DLLVF 128 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~-d~ii~ 128 (224)
+|+++|++++|||||+++|..+.+.. .+.++ ..+...... .+..+.+||+||+.+++..+..+++.+ +++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS--TVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence 78999999999999999999988766 33332 333333332 367899999999999998888889998 99999
Q ss_pred EEECCCC-CCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCCCCHHHHH
Q psy12173 129 VVDSADP-SKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGALSAEEVG 178 (224)
Q Consensus 129 v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~ 178 (224)
|+|+++. +++.....++..++.... ..++|+++++||.|+......+.++
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~ 131 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIK 131 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHH
Confidence 9999998 678888888877765321 2579999999999998765544433
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=153.02 Aligned_cols=182 Identities=20% Similarity=0.199 Sum_probs=123.8
Q ss_pred CCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchh-
Q psy12173 34 STPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQEN- 111 (224)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~- 111 (224)
..+..+.++.....+-.....|+++|.||+|||||+|+|+..+....+....|.......+.+.+ ..+.++||||..+
T Consensus 141 ~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~ 220 (390)
T PRK12298 141 KTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEG 220 (390)
T ss_pred cCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcccc
Confidence 33444555666666666778999999999999999999998775443344556667777777765 5699999999653
Q ss_pred ------HHHHHHhhccCCCEEEEEEECC---CCCCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCCCCHHHHHhhc
Q psy12173 112 ------VRRFWNTYFEDTDLLVFVVDSA---DPSKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGALSAEEVGVAL 181 (224)
Q Consensus 112 ------~~~~~~~~~~~~d~ii~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 181 (224)
.......+++.+|++++|+|++ +.++++....++.++.... ...++|+++|+||+|+.......+..+.+
T Consensus 221 a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l 300 (390)
T PRK12298 221 ASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAI 300 (390)
T ss_pred ccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHH
Confidence 1222234588999999999998 4556666666666665532 22468999999999996542222221111
Q ss_pred CcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 182 DLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 182 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
.. ...+..+++++||+++.|+ +++...+.+.+..
T Consensus 301 ~~----~~~~~~~Vi~ISA~tg~GI-deLl~~I~~~L~~ 334 (390)
T PRK12298 301 VE----ALGWEGPVYLISAASGLGV-KELCWDLMTFIEE 334 (390)
T ss_pred HH----HhCCCCCEEEEECCCCcCH-HHHHHHHHHHhhh
Confidence 10 0111126899999999999 6666677666643
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=159.26 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=109.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC---CCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG---NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~---~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+.|+++|++++|||||+++|++. .++.+.....|.+..+..+..++..+.+||+||++.|.......+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 46899999999999999999963 333322333455566666777779999999999999998888888999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCCHH----HHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALSAE----EVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
+|++++. ..+..+.+. ++.. .++| +++|+||+|+.+....+ ++.+.+..... .. +++++++||++|.
T Consensus 81 VDa~~G~-~~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~--~~~ii~vSA~tG~ 152 (581)
T TIGR00475 81 VDADEGV-MTQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LK--NAKIFKTSAKTGQ 152 (581)
T ss_pred EECCCCC-cHHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CC--CCcEEEEeCCCCC
Confidence 9999852 222233332 2222 3677 99999999997643222 22222211000 01 2489999999999
Q ss_pred ccccchHHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMYA 220 (224)
Q Consensus 205 gv~~~~~~~i~~~l~~ 220 (224)
|+ +++...+.+.+..
T Consensus 153 GI-~eL~~~L~~l~~~ 167 (581)
T TIGR00475 153 GI-GELKKELKNLLES 167 (581)
T ss_pred Cc-hhHHHHHHHHHHh
Confidence 99 5555566555543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=161.79 Aligned_cols=157 Identities=19% Similarity=0.214 Sum_probs=109.7
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
..+.+.|+++|+.++|||||+++|....+........|.......+.+++..+.+|||||++.|..++...+..+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45778999999999999999999998776542222233344455666778899999999999999998888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC--cccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS--RQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++.. ......+..... .++|+|+++||+|+.+. +.+++...+....... ....++++++||++|.|+
T Consensus 367 VVdAddGv~-~qT~e~i~~a~~----~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVM-PQTIEAINHAKA----AGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCC-HhHHHHHHHHHh----cCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999998632 222233332221 47899999999999653 2333333221111111 111248999999999999
Q ss_pred ccchH
Q psy12173 207 LHVSV 211 (224)
Q Consensus 207 ~~~~~ 211 (224)
++.+.
T Consensus 441 ~eLle 445 (787)
T PRK05306 441 DELLE 445 (787)
T ss_pred hHHHH
Confidence 55443
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=131.01 Aligned_cols=160 Identities=23% Similarity=0.358 Sum_probs=126.4
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-------CC---CCCCCceeEEEEEeCC-eEEEEEEcCCchhHHHHH
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLS-------HN---LKPTEGFNITILQKGE-YTLNIFELGGQENVRRFW 116 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-------~~---~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~ 116 (224)
......||++.|+.++||||+++++........ .. ...|+...+..+...+ ..+.++|||||++++.+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 345678999999999999999999998874211 01 1245567777777655 899999999999999999
Q ss_pred HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEE
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
...++++++.|+++|.+.+..+ -...+..++.... .+|++|++||.|+++...++++.+.++.... ..+.+
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~-----~~~vi 156 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLELL-----SVPVI 156 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhccC-----CCcee
Confidence 9999999999999999999888 2334444444432 3999999999999999999999999987641 12899
Q ss_pred EeecCCCCccccchHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+.+|..+++..+.+......
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999996665554443
|
|
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-21 Score=141.92 Aligned_cols=163 Identities=19% Similarity=0.259 Sum_probs=134.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEe--CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQK--GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...+|++++|..++||||++.+++.+-|.. ++..|++..... +.+ .++...+||++|++++..+...+++++.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTk--dykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTK--DYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhcccccc--ccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 457899999999999999999999999988 788888754433 322 45778899999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
.++||+-+|..||+....|...+.... ..+|.++|-||+|+.++ ....+.+...... .+.++.+|++..
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l-------~~RlyRtSvked 166 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL-------HKRLYRTSVKED 166 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHh-------hhhhhhhhhhhh
Confidence 999999999999999999999998775 58999999999999876 3334443333221 127889999999
Q ss_pred CccccchHHHHHHHHHHhhc
Q psy12173 204 LHHLHVSVVEAEQAMYALSQ 223 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~~~~ 223 (224)
.|+-+.|..++.+-.+++.|
T Consensus 167 ~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 99999999888887776654
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=132.55 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=100.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCCeEEEEEEcCCchhHH--------HHHHhhccC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGEYTLNIFELGGQENVR--------RFWNTYFED 122 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~~ 122 (224)
..+|+++|++|+|||||++++.+...........+.. .....+...+..+.+|||||..... ......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999876543222222222 2222334456889999999965322 223445788
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+|++++|+|++++. .....++...... .+.|+++++||+|+... ....+....+.. ....++++++|++
T Consensus 83 ~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~ 152 (168)
T cd04163 83 VDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE-----LGPFAEIFPISAL 152 (168)
T ss_pred CCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh-----ccCCCceEEEEec
Confidence 99999999999872 2233333333333 26899999999999742 222332222221 1112389999999
Q ss_pred CCCccccchHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQ 216 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~ 216 (224)
++.|+ +++...+.+
T Consensus 153 ~~~~~-~~l~~~l~~ 166 (168)
T cd04163 153 KGENV-DELLEEIVK 166 (168)
T ss_pred cCCCh-HHHHHHHHh
Confidence 99999 555555554
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=135.70 Aligned_cols=134 Identities=17% Similarity=0.216 Sum_probs=100.5
Q ss_pred CCCCCCCCCCCCCceeEEE--EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHh
Q psy12173 75 GNTSLSHNLKPTEGFNITI--LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLG 150 (224)
Q Consensus 75 ~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 150 (224)
+.|.. .+.||++..+.. +..+ ..++.+|||+|++++...+..+++++|++|+|||++++++++....|+..+..
T Consensus 3 ~~F~~--~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDN--NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCC--CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 34555 677888865543 4443 47899999999999999999999999999999999999999999999988876
Q ss_pred cCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 151 DQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 151 ~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
... .+.|+++|+||+|+.+. ...++.....+ ... +.|++|||++|.|+++.|. .+.+.+-
T Consensus 81 ~~~-~~~piilVgNK~DL~~~~~v~~~e~~~~~~-----~~~--~~~~e~SAk~g~nV~~lf~-~l~~~l~ 142 (176)
T PTZ00099 81 ERG-KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-----EYN--TMFHETSAKAGHNIKVLFK-KIAAKLP 142 (176)
T ss_pred hcC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcC--CEEEEEECCCCCCHHHHHH-HHHHHHH
Confidence 532 57899999999999643 33334333221 112 3799999999999966555 4444443
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=133.75 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=92.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc-----hhHHHHHHhhccCCCEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ-----ENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~-----~~~~~~~~~~~~~~d~ii~ 128 (224)
+|+++|.+++|||||++++.+.. .. . .++. .+.+... .+|||||. +.++... ..++++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~--~-~~~~-----~v~~~~~--~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL--A-RKTQ-----AVEFNDK--GDIDTPGEYFSHPRWYHALI-TTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc--C-ccce-----EEEECCC--CcccCCccccCCHHHHHHHH-HHHhcCCEEEE
Confidence 79999999999999999988654 22 1 1121 1222221 27999997 3333333 34789999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|+|+++.+++.. .++..+ ..++|+++++||+|+.+. ..+++.+.++.. ....+++++||++|+|+ +
T Consensus 71 v~d~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~-----~~~~p~~~~Sa~~g~gi-~ 136 (158)
T PRK15467 71 VHGANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET-----GFEEPIFELNSHDPQSV-Q 136 (158)
T ss_pred EEeCCCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc-----CCCCCEEEEECCCccCH-H
Confidence 999998876532 333332 136799999999998653 344444433211 11138999999999999 5
Q ss_pred chHHHHHHHHH
Q psy12173 209 VSVVEAEQAMY 219 (224)
Q Consensus 209 ~~~~~i~~~l~ 219 (224)
++...+.+++.
T Consensus 137 ~l~~~l~~~~~ 147 (158)
T PRK15467 137 QLVDYLASLTK 147 (158)
T ss_pred HHHHHHHHhch
Confidence 55556665553
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-19 Score=151.96 Aligned_cols=150 Identities=20% Similarity=0.223 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCc--------hhHHHHHHhhccCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQ--------ENVRRFWNTYFEDTD 124 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~~~~~~~d 124 (224)
+|+++|.+|+|||||+|+|.+......... ..|.+.......+.+..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 589999999999999999998774322222 23445666777788899999999996 444555666789999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++++|+|..++.+.. ...+..++.. .++|+++|+||+|+.+.... ..+...+ .. .+++++||++|.
T Consensus 81 ~vl~vvD~~~~~~~~--d~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~l-----g~--~~~~~vSa~~g~ 146 (429)
T TIGR03594 81 VILFVVDGREGLTPE--DEEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYSL-----GF--GEPIPISAEHGR 146 (429)
T ss_pred EEEEEEeCCCCCCHH--HHHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHhc-----CC--CCeEEEeCCcCC
Confidence 999999999864433 2333444433 37899999999998754221 1111111 11 168999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+ +++.+.+.+.+
T Consensus 147 gv-~~ll~~i~~~l 159 (429)
T TIGR03594 147 GI-GDLLDAILELL 159 (429)
T ss_pred Ch-HHHHHHHHHhc
Confidence 99 55555555443
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.8e-19 Score=159.40 Aligned_cols=162 Identities=14% Similarity=0.190 Sum_probs=110.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCch----------hHHHHH-Hh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQE----------NVRRFW-NT 118 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~-~~ 118 (224)
..++|+++|.+|+|||||++++++..+...... ..|.+.....+.+++..+.+|||||.. .+.... ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 458999999999999999999999875322233 334445555567788889999999953 222222 34
Q ss_pred hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
.++.+|++++|+|++++.+..... .+..+.. .++|+++|+||+|+.+....+.+.+.+........ .++++++
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~--~~~ii~i 601 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVT--WARRVNL 601 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCC--CCCEEEE
Confidence 478999999999999987776653 3333332 37899999999999764333333333221110111 2378999
Q ss_pred ecCCCCccccchHHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
||++|.|+ +.+.+.+.+.+.+
T Consensus 602 SAktg~gv-~~L~~~i~~~~~~ 622 (712)
T PRK09518 602 SAKTGWHT-NRLAPAMQEALES 622 (712)
T ss_pred ECCCCCCH-HHHHHHHHHHHHH
Confidence 99999999 5666666666554
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-19 Score=152.78 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=107.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCCeEEEEEEcCCchh----------HHHH-HHh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGEYTLNIFELGGQEN----------VRRF-WNT 118 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~-~~~ 118 (224)
..++|+++|.+|+|||||++++++........... |.+.....+..++..+.+|||||... +... ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 46999999999999999999999866322112222 22333344556788899999999532 2211 233
Q ss_pred hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+++.+|++|+|+|++++.+.... .+...... .++|+++++||+|+.+....+++.+.+.... .....++++++
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l--~~~~~~~i~~~ 324 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDL--RIAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRL--PFLDYAPIVFI 324 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhc--ccccCCCEEEE
Confidence 57899999999999998665443 22233322 3789999999999975433333433332111 11123489999
Q ss_pred ecCCCCccccchHHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
||++|.|+ +++.+.+.++...
T Consensus 325 SA~~~~gv-~~l~~~i~~~~~~ 345 (435)
T PRK00093 325 SALTGQGV-DKLLEAIDEAYEN 345 (435)
T ss_pred eCCCCCCH-HHHHHHHHHHHHH
Confidence 99999999 5566666666554
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=152.25 Aligned_cols=148 Identities=20% Similarity=0.211 Sum_probs=102.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCCCCceeEEEEEeCCeEEEEEEcCCchh--------HHHHHHhhccCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHN-LKPTEGFNITILQKGEYTLNIFELGGQEN--------VRRFWNTYFEDT 123 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~~ 123 (224)
++|+++|.+|+|||||+++|.+........ ...|.+.....+.+++..+.+|||||++. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 589999999999999999999877432212 22344566677778889999999999876 333445568899
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|++++|+|+.++.+.. ..++..++.. .++|+++|+||+|+.+. .....+...+. .. .++++||++|
T Consensus 82 d~il~vvd~~~~~~~~--~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~lg-----~~--~~~~iSa~~g 147 (435)
T PRK00093 82 DVILFVVDGRAGLTPA--DEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSLG-----LG--EPYPISAEHG 147 (435)
T ss_pred CEEEEEEECCCCCCHH--HHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhcC-----CC--CCEEEEeeCC
Confidence 9999999999864433 2233333333 37899999999997542 12222222211 11 4889999999
Q ss_pred CccccchHHHHH
Q psy12173 204 LHHLHVSVVEAE 215 (224)
Q Consensus 204 ~gv~~~~~~~i~ 215 (224)
.|+++.+ +.+.
T Consensus 148 ~gv~~l~-~~I~ 158 (435)
T PRK00093 148 RGIGDLL-DAIL 158 (435)
T ss_pred CCHHHHH-HHHH
Confidence 9995444 4443
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-19 Score=136.06 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=99.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeCCeEEEEEEcCCc----------hhHHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKGEYTLNIFELGGQ----------ENVRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~D~~G~----------~~~~~~~~ 117 (224)
...++|+++|++|+|||||++++++..+.. .+.++.+.... ... .+.++.+|||||. +.+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~--~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLA--RTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcc--cccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 356899999999999999999999876544 33333332211 111 2468999999994 34444444
Q ss_pred hhcc---CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCccccee
Q psy12173 118 TYFE---DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 118 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
.++. .++++++|+|.+++.+... .++...+.. .+.|+++++||+|+.+....++..+.+... ..... .+
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~--~~ 170 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGD--DE 170 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcC--Cc
Confidence 4444 3468889999887644332 233333333 478999999999997643222222211110 01112 28
Q ss_pred EEEeecCCCCccccchHHHHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
++++||++|.|+ +++.+.+.+.+
T Consensus 171 ~~~~Sa~~~~gi-~~l~~~i~~~~ 193 (196)
T PRK00454 171 VILFSSLKKQGI-DELRAAIAKWL 193 (196)
T ss_pred eEEEEcCCCCCH-HHHHHHHHHHh
Confidence 999999999999 66666666554
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-19 Score=143.56 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=102.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCCeEEEEEEcCCchhHH--------HHHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGEYTLNIFELGGQENVR--------RFWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~ 121 (224)
+.-.|+++|.+|+|||||+|++++.+....+....|+...... ...++.++.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4557999999999999999999998764433333344433333 23355899999999964322 22344578
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
.+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... ....+..+.+.. ... .++++++||
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~--~~~i~~iSA 153 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMD--FAEIVPISA 153 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCC--CCeEEEecC
Confidence 99999999999983 33333444444433 36899999999999743 222222222211 011 238999999
Q ss_pred CCCCccccchHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l 218 (224)
++|.|+ +++...+.+.+
T Consensus 154 ~~~~gv-~~L~~~L~~~l 170 (292)
T PRK00089 154 LKGDNV-DELLDVIAKYL 170 (292)
T ss_pred CCCCCH-HHHHHHHHHhC
Confidence 999999 55555555443
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-20 Score=132.09 Aligned_cols=112 Identities=25% Similarity=0.467 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC--CCcee--EEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKP--TEGFN--ITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~--t~~~~--~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
||+|+|++|+|||||+++|.+..+.......+ ...+. ..........+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761111111 12222 222223445699999999998887666668999999999
Q ss_pred EECCCCCCHHHHHHH---HHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 130 VDSADPSKLPVAAME---LKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~piilv~nK~D 167 (224)
||++++++++.+.++ +..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887544 4444432 24699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-19 Score=139.64 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=112.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCCeEEEEEEcCCchhH--------HHHHHhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGEYTLNIFELGGQENV--------RRFWNTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~D~~G~~~~--------~~~~~~~~ 120 (224)
++.--|+++|.|++|||||+|++.+.+....+.-..|+.....- ...++.++.++||||..+- .......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 45567999999999999999999999976655555566544444 4557899999999994432 22234457
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEee
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
..+|+++||+|++++ +....+++.+.++. .+.|+++++||.|..++.. ...+.+.+... .... .++++|
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~--~ivpiS 153 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFK--EIVPIS 153 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcc--eEEEee
Confidence 899999999999986 33345555555544 4689999999999987744 23333333221 1222 899999
Q ss_pred cCCCCccccchHHHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~ 219 (224)
|++|.|+ +.+.+.+...|-
T Consensus 154 A~~g~n~-~~L~~~i~~~Lp 172 (298)
T COG1159 154 ALKGDNV-DTLLEIIKEYLP 172 (298)
T ss_pred ccccCCH-HHHHHHHHHhCC
Confidence 9999999 777766666543
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-19 Score=157.10 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=107.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
.+.++|+++|++++|||||+++|....+........|.......+.+ .+..+.+|||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 46789999999999999999999987765422222233222333332 35899999999999999999888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC--cccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS--RQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|++++.... ..+.+..+. . .++|+++++||+|+... ..+++.+.+....... ....++++++||++|
T Consensus 322 aILVVDA~dGv~~Q-T~E~I~~~k-~---~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQ-TIEAINYIQ-A---ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChh-hHHHHHHHH-h---cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 99999998863322 222333322 1 47899999999999753 2333333332111000 111248999999999
Q ss_pred CccccchHHHHH
Q psy12173 204 LHHLHVSVVEAE 215 (224)
Q Consensus 204 ~gv~~~~~~~i~ 215 (224)
.|+++ +...+.
T Consensus 396 ~GIde-Lle~I~ 406 (742)
T CHL00189 396 TNIDK-LLETIL 406 (742)
T ss_pred CCHHH-HHHhhh
Confidence 99954 444443
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-19 Score=159.50 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=106.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH----------HHHhh-
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR----------FWNTY- 119 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~- 119 (224)
...+|+++|++|+|||||+|++++.+....+....|.+.....+.+++.++.+|||||..++.. ....+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3568999999999999999999988765544444555556666777889999999999876532 11222
Q ss_pred -ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HHHHhhcCcccccCccccee
Q psy12173 120 -FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 120 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~ 194 (224)
.+.+|++++|+|+++.++.. .++.++.. .++|+++++||+|+.++... +++.+.+ +++
T Consensus 82 ~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L----------G~p 144 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARL----------GCP 144 (772)
T ss_pred hccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh----------CCC
Confidence 35899999999999875532 23334333 37999999999998754222 2222222 238
Q ss_pred EEEeecCCCCccccchHHHHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
++++||++|+|+ +++.+.+.+..
T Consensus 145 VvpiSA~~g~GI-deL~~~I~~~~ 167 (772)
T PRK09554 145 VIPLVSTRGRGI-EALKLAIDRHQ 167 (772)
T ss_pred EEEEEeecCCCH-HHHHHHHHHhh
Confidence 999999999999 56666666543
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-19 Score=136.99 Aligned_cols=151 Identities=20% Similarity=0.161 Sum_probs=96.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------------------------CCCCCCCceeEEEEEeCCeEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLS-------------------------------HNLKPTEGFNITILQKGEYTLN 102 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 102 (224)
+|+++|++++|||||+++|+...-... .....|.+.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975331110 0122234444555667788999
Q ss_pred EEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHHHHhh
Q psy12173 103 IFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEEVGVA 180 (224)
Q Consensus 103 l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~ 180 (224)
+|||||++++.......++.+|++++|+|++++.. ..... ...+.... ...++|+|+||+|+.+... .+++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999999887666667899999999999988632 22222 22222221 2345788999999965311 1122111
Q ss_pred cCc--ccccCcccceeEEEeecCCCCccccch
Q psy12173 181 LDL--SSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 181 ~~~--~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
++. ....... .+++++||++|.|+++..
T Consensus 157 ~~~~~~~~~~~~--~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 157 YLAFAAKLGIED--ITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHcCCCC--ceEEEEeCCCCCCCccCC
Confidence 110 0011111 279999999999996543
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-19 Score=146.69 Aligned_cols=151 Identities=20% Similarity=0.220 Sum_probs=112.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchh---------HHHHHHhhccC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQEN---------VRRFWNTYFED 122 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~~ 122 (224)
..|+++|-||+|||||+|||++.+....+++. -|-+..+....+.+..+.++||+|.+. .+.+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 68999999999999999999998865443443 456678888999999999999999652 22344556789
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
||++|||+|...+ .....+.+..++.. .++|+++|+||+|-... .+...+.+.+. .. +++++||.+
T Consensus 84 ADvilfvVD~~~G--it~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~~~~efyslG-----~g--~~~~ISA~H 149 (444)
T COG1160 84 ADVILFVVDGREG--ITPADEEIAKILRR---SKKPVILVVNKIDNLKA--EELAYEFYSLG-----FG--EPVPISAEH 149 (444)
T ss_pred CCEEEEEEeCCCC--CCHHHHHHHHHHHh---cCCCEEEEEEcccCchh--hhhHHHHHhcC-----CC--CceEeehhh
Confidence 9999999999986 44455666666664 47999999999998733 22222333221 11 799999999
Q ss_pred CCccccchHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAM 218 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l 218 (224)
|.|+ ..+.+++.+.+
T Consensus 150 g~Gi-~dLld~v~~~l 164 (444)
T COG1160 150 GRGI-GDLLDAVLELL 164 (444)
T ss_pred ccCH-HHHHHHHHhhc
Confidence 9999 66666666554
|
|
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-20 Score=130.84 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=133.6
Q ss_pred cccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC--CeEEEEEEcCCchhHHHHHHhhc
Q psy12173 45 SKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG--EYTLNIFELGGQENVRRFWNTYF 120 (224)
Q Consensus 45 ~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~ 120 (224)
+.....-.+||.++|++..|||||+-.+.++.+.+ .+..+.|.+. +.+..+ +..+.+||++|++++..+.....
T Consensus 13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de--~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac 90 (205)
T KOG1673|consen 13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDE--EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIAC 90 (205)
T ss_pred cccccceEEEEEeecccccCceeeehhhhcchhHH--HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceee
Confidence 33344567899999999999999999999999877 6667777554 344444 47899999999999999998889
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
.++-+++|+||.+.++++..+.+|+.+..+... ..--|++++|.|+.-..+.+...+.....+.-.+.++++.+.||+
T Consensus 91 ~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~St 168 (205)
T KOG1673|consen 91 KDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCST 168 (205)
T ss_pred cCcEEEEEEEecCchHHHHHHHHHHHHHhccCC--ccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeec
Confidence 999999999999999999999999999877642 333488999999977655555444443333233555669999999
Q ss_pred CCCCccccchHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l 218 (224)
....|+.+.|...+.+.+
T Consensus 169 s~sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 169 SHSINVQKIFKIVLAKLF 186 (205)
T ss_pred cccccHHHHHHHHHHHHh
Confidence 999999888887766654
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=129.01 Aligned_cols=152 Identities=19% Similarity=0.164 Sum_probs=101.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeC-CeEEEEEEcCCchhHH-------HHHHhhccCCCEEE
Q psy12173 57 ILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKG-EYTLNIFELGGQENVR-------RFWNTYFEDTDLLV 127 (224)
Q Consensus 57 v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~ii 127 (224)
++|++|+|||||++++.+....... ....+........... ...+.+||+||..... .....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987655222 2222333444444444 6799999999976543 23345678999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|+|.++........ +...... .+.|+++++||+|+.......+.......... ....++++++||+++.|+
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sa~~~~~v- 152 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILL--LLLGLPVIAVSALTGEGI- 152 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcc--cccCCceEEEeeeccCCH-
Confidence 999999987766654 2222222 47999999999999876444433211111111 222348999999999999
Q ss_pred cchHHHHHH
Q psy12173 208 HVSVVEAEQ 216 (224)
Q Consensus 208 ~~~~~~i~~ 216 (224)
+++.+.+.+
T Consensus 153 ~~l~~~l~~ 161 (163)
T cd00880 153 DELREALIE 161 (163)
T ss_pred HHHHHHHHh
Confidence 555555443
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=152.69 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=105.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCC----------CCCceeEEEEEe---C--CeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSL-----SHNLK----------PTEGFNITILQK---G--EYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-----~~~~~----------~t~~~~~~~~~~---~--~~~~~l~D~~G~~ 110 (224)
+..+++++|+.++|||||+++|+...... .+.+. .|.......+.+ + ...+.+|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 35699999999999999999998752110 00111 122222223333 2 2789999999999
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCccccc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSIS 187 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 187 (224)
++...+..++..+|++|+|+|++++.+......|+... . .+.|+++|+||+|+.+.... +++.+.++.
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~---- 152 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGL---- 152 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCC----
Confidence 99988888999999999999999987766655554433 2 36899999999999654211 233333321
Q ss_pred CcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 188 SRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
... .++++||++|.|+ +++.+.+.+.+
T Consensus 153 -~~~--~vi~vSAktG~GI-~~Lle~I~~~l 179 (595)
T TIGR01393 153 -DAS--EAILASAKTGIGI-EEILEAIVKRV 179 (595)
T ss_pred -Ccc--eEEEeeccCCCCH-HHHHHHHHHhC
Confidence 111 5899999999999 44555554433
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=149.59 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=103.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL-------------------------------SHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 98 (224)
...++|+++|++++|||||+++|+...-.. +.....|.+.....+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 467899999999999999999998432110 0123345556666777788
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-----
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----- 173 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----- 173 (224)
..+.+|||||++.+.......+..+|++++|+|+++...+.....+...+.... ...|+++++||+|+.+...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 999999999999887655555789999999999997322322222222222221 2347999999999975211
Q ss_pred -HHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 174 -AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 174 -~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.+++.+.+....+.... ++++++||++|.|+++.
T Consensus 162 ~~~~i~~~l~~~g~~~~~--~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDD--IPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHhhCCCcCc--ceEEEeecccCCCcccc
Confidence 12333333221111112 38999999999999653
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=137.16 Aligned_cols=150 Identities=16% Similarity=0.159 Sum_probs=97.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCCCCCceeEEEEEeCCeEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTS-------------------------------LSHNLKPTEGFNITILQKGEYTLN 102 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 102 (224)
+|+++|++++|||||+.+|+...-. .+.....|.+.....+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999999742100 000112233455566777889999
Q ss_pred EEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC------CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CC--
Q psy12173 103 IFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS------KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LS-- 173 (224)
Q Consensus 103 l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~-- 173 (224)
+|||||+..+.......++.+|++++|+|++++. ........+... ... ..+|+++++||+|+... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 9999999888877767788999999999999852 111222222222 221 23689999999999742 11
Q ss_pred -HHHHHhhcC----cccccCcccceeEEEeecCCCCcccc
Q psy12173 174 -AEEVGVALD----LSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 174 -~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
.+++.+.++ ........ ++++++||++|.|+++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~--~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKD--VPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCC--ceEEEeecCcCCCCCc
Confidence 223333221 11111122 3899999999999964
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-18 Score=154.53 Aligned_cols=153 Identities=19% Similarity=0.152 Sum_probs=102.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCchh--------HHHHHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQEN--------VRRFWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 121 (224)
...+|+++|.+++|||||+|+|++......... ..|.+.......+++..+.+|||||.+. +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 457899999999999999999998764321121 2233344445566788999999999653 3445556789
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++|+|+|+++. +......+...+.. .++|+++|+||+|+.... .+..+...+ ... ..+++||+
T Consensus 354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l-----g~~--~~~~iSA~ 419 (712)
T PRK09518 354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL-----GLG--EPYPISAM 419 (712)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc-----CCC--CeEEEECC
Confidence 99999999999875 33344444444443 479999999999986531 111222111 111 45789999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|+++.+ +.+.+.+
T Consensus 420 ~g~GI~eLl-~~i~~~l 435 (712)
T PRK09518 420 HGRGVGDLL-DEALDSL 435 (712)
T ss_pred CCCCchHHH-HHHHHhc
Confidence 999995444 4444443
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.6e-19 Score=150.15 Aligned_cols=155 Identities=16% Similarity=0.100 Sum_probs=101.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC--CCC-----------------------------CCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN--TSL-----------------------------SHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 98 (224)
...++|+++|+.++|||||+.+|+... ... +.....|.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 467899999999999999999998521 110 0011234445555666678
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGALS---- 173 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---- 173 (224)
..+.+|||||++++.......+..+|++++|+|++++++.... ..+...+.... ...|+++++||+|+.+...
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHH
Confidence 9999999999999877666678899999999999998543111 11111222221 2357999999999964211
Q ss_pred --HHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 174 --AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 174 --~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
.+++.+.++........ ++++++||++|.|+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~--~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDT--VPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHcCCCccc--ceEEEeeccccccccc
Confidence 12222222211111122 3899999999999965
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-18 Score=135.64 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=65.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH-------HHHHhhccCCCEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR-------RFWNTYFEDTDLL 126 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~i 126 (224)
+|+++|++|+|||||+++|++......+...+|.+.....+.+++..+.+||+||..+.. ......++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 789999999999999999998774433334456666777788889999999999975322 2334568999999
Q ss_pred EEEEECCCCC
Q psy12173 127 VFVVDSADPS 136 (224)
Q Consensus 127 i~v~d~~~~~ 136 (224)
++|+|+++++
T Consensus 82 l~V~D~t~~~ 91 (233)
T cd01896 82 LMVLDATKPE 91 (233)
T ss_pred EEEecCCcch
Confidence 9999998764
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-18 Score=130.31 Aligned_cols=149 Identities=19% Similarity=0.130 Sum_probs=97.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTS----------------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
.++|+++|..++|||||+++|+..... .+.....|.......+..++.++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 478999999999999999999864100 0001122333333445556789999999999988877
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-HH----HHHhhcCcccccCc
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-AE----EVGVALDLSSISSR 189 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~ 189 (224)
....+..+|++++|+|+..+-. ......+..+ .. .++| +|+++||+|+..+.. .+ ++.+.+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 7777899999999999987522 2223333333 32 3566 789999999964311 12 22222221111111
Q ss_pred ccceeEEEeecCCCCccc
Q psy12173 190 QHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~ 207 (224)
+++++++||++|.|+.
T Consensus 157 --~v~iipiSa~~g~n~~ 172 (195)
T cd01884 157 --NTPIVRGSALKALEGD 172 (195)
T ss_pred --CCeEEEeeCccccCCC
Confidence 3589999999999874
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-18 Score=141.06 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=122.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCCchh----------HHH-HHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQEN----------VRR-FWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~-~~~ 117 (224)
...++|+++|-|++|||||+|++++..-...+ ....|.+.-...+++++.++.++||.|..+ |.. ...
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 35689999999999999999999998744322 333455566777888999999999999432 222 123
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
..+..+|++++|+|++.+ +.+....+..+... .+.++++|+||+|+.+. ...++.++.+......... +++
T Consensus 256 ~aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~--a~i 328 (444)
T COG1160 256 KAIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF--API 328 (444)
T ss_pred hHHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccC--CeE
Confidence 447889999999999998 66666666666665 58999999999999776 5556665555542222233 499
Q ss_pred EEeecCCCCccccchHHHHHHHHHHhh
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~~~ 222 (224)
+.+||++|.|+ ..+...+.++...+.
T Consensus 329 ~~iSA~~~~~i-~~l~~~i~~~~~~~~ 354 (444)
T COG1160 329 VFISALTGQGL-DKLFEAIKEIYECAT 354 (444)
T ss_pred EEEEecCCCCh-HHHHHHHHHHHHHhc
Confidence 99999999999 666677777776543
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=153.18 Aligned_cols=140 Identities=22% Similarity=0.221 Sum_probs=96.8
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH------HHhh--ccCCCEEEEEE
Q psy12173 59 GLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF------WNTY--FEDTDLLVFVV 130 (224)
Q Consensus 59 G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~--~~~~d~ii~v~ 130 (224)
|++|+|||||+|++++.++...+....|.+.....+.+++.++.+|||||+.++... ...+ .+.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 899999999999999988655333334445555667778888999999998765432 2222 24789999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|.++.+.. ..+..++.. .++|+++++||+|+.++.. .+++.+.++ ++++++||++|.|+
T Consensus 81 Dat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg----------~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 81 DASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERLG----------VPVVPTSATEGRGI 143 (591)
T ss_pred cCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC----------CCEEEEECCCCCCH
Confidence 99985432 233333332 3799999999999865322 222333222 38999999999999
Q ss_pred ccchHHHHHH
Q psy12173 207 LHVSVVEAEQ 216 (224)
Q Consensus 207 ~~~~~~~i~~ 216 (224)
++ +.+.+.+
T Consensus 144 ~e-L~~~i~~ 152 (591)
T TIGR00437 144 ER-LKDAIRK 152 (591)
T ss_pred HH-HHHHHHH
Confidence 54 4445444
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=149.14 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=114.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhH------HHHHHhh--ccC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENV------RRFWNTY--FED 122 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~------~~~~~~~--~~~ 122 (224)
+..+|+++|+||+|||||+|++++.+....|...-|++-....+..++..++++|+||.-+. +.....+ -..
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 34579999999999999999999999777777777888888888899999999999993221 1122222 357
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+|+++.|+|+++.++.-.+.-.+.++ +.|++++.|+.|+.+. .+.+++.+.++. |++++
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv----------PVv~t 144 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDIEKLSKLLGV----------PVVPT 144 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccHHHHHHHhCC----------CEEEE
Confidence 79999999999986655444433333 8999999999999764 777888888865 99999
Q ss_pred ecCCCCccccchHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~ 215 (224)
||++|.|+ +++...+.
T Consensus 145 vA~~g~G~-~~l~~~i~ 160 (653)
T COG0370 145 VAKRGEGL-EELKRAII 160 (653)
T ss_pred EeecCCCH-HHHHHHHH
Confidence 99999998 55555554
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=147.65 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=105.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC--CCC---CC----------CCCCCCceeEEEEEe-----CCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN--TSL---SH----------NLKPTEGFNITILQK-----GEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~---~~----------~~~~t~~~~~~~~~~-----~~~~~~l~D~~G~ 109 (224)
.+.++++++|+.++|||||+.+|+... +.. .+ ....|+......+.+ ++..+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 356799999999999999999998632 110 00 111222222333433 2588999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCcccc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSI 186 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~ 186 (224)
.++...+..++..+|++|+|+|++++........+.. ... .++|+++|+||+|+.+.... +++.+.++.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~--- 156 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGI--- 156 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCC---
Confidence 9999888888999999999999998766554444332 222 37899999999998654221 233333221
Q ss_pred cCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 187 SSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
... .++++||++|.|+ +++.+.+.+.+
T Consensus 157 --~~~--~vi~iSAktG~GI-~~Ll~~I~~~l 183 (600)
T PRK05433 157 --DAS--DAVLVSAKTGIGI-EEVLEAIVERI 183 (600)
T ss_pred --Ccc--eEEEEecCCCCCH-HHHHHHHHHhC
Confidence 112 5899999999999 55555554443
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=139.44 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=112.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CceeEEEEEeCCeEEEEEEcCCchhHHH--------HHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT-EGFNITILQKGEYTLNIFELGGQENVRR--------FWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 121 (224)
..++++++|.||+|||||+|.|.+....-.++...| -+.-...+..+++++.++||.|..+-.. .....++
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 468999999999999999999999885544444444 4567777889999999999999553211 1233478
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.||.+++|+|.+.+.+-. ...+... ...++|+++|.||.|+..+...... +.. ... +++.+||+
T Consensus 296 ~ADlvL~v~D~~~~~~~~--d~~~~~~----~~~~~~~i~v~NK~DL~~~~~~~~~-~~~-------~~~--~~i~iSa~ 359 (454)
T COG0486 296 EADLVLFVLDASQPLDKE--DLALIEL----LPKKKPIIVVLNKADLVSKIELESE-KLA-------NGD--AIISISAK 359 (454)
T ss_pred hCCEEEEEEeCCCCCchh--hHHHHHh----cccCCCEEEEEechhcccccccchh-hcc-------CCC--ceEEEEec
Confidence 999999999999972222 2222221 1257999999999999887543333 111 111 69999999
Q ss_pred CCCccccchHHHHHHHHHHh
Q psy12173 202 SNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~~ 221 (224)
+|+|+ +.+...+.+.+...
T Consensus 360 t~~Gl-~~L~~~i~~~~~~~ 378 (454)
T COG0486 360 TGEGL-DALREAIKQLFGKG 378 (454)
T ss_pred CccCH-HHHHHHHHHHHhhc
Confidence 99999 88888888777653
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-18 Score=149.12 Aligned_cols=159 Identities=18% Similarity=0.103 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC---CCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSG---NTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~---~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.|+++|+.++|||||+++|++. .+..+.....|++..+..+.. ++..+.+|||||++.|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999963 233322334555555444444 456789999999999987777778999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+|++++- .....+.+ .+... .++| +++|+||+|+.++...++..+.+...........++++++||++|.|+ +
T Consensus 82 Vda~eg~-~~qT~ehl-~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI-~ 155 (614)
T PRK10512 82 VACDDGV-MAQTREHL-AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGI-D 155 (614)
T ss_pred EECCCCC-cHHHHHHH-HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC-H
Confidence 9998752 22223333 33333 2455 689999999975422222222221000000111238999999999999 6
Q ss_pred chHHHHHHHH
Q psy12173 209 VSVVEAEQAM 218 (224)
Q Consensus 209 ~~~~~i~~~l 218 (224)
.+.+.+.+..
T Consensus 156 ~L~~~L~~~~ 165 (614)
T PRK10512 156 ALREHLLQLP 165 (614)
T ss_pred HHHHHHHHhh
Confidence 6666665543
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=144.70 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=100.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCCCCCceeEEE----------------E----Ee------CCeE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL---SHNLKPTEGFNITI----------------L----QK------GEYT 100 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~---~~~~~~t~~~~~~~----------------~----~~------~~~~ 100 (224)
+..++|+++|++++|||||+++|.+..... +.....|+...+.. . .. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999999997643211 00111111111000 0 00 1467
Q ss_pred EEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HH
Q psy12173 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EE 176 (224)
Q Consensus 101 ~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~ 176 (224)
+.+|||||+++|...+......+|++++|+|++++....+..+.+..+ ... ...|+++++||+|+.+.... ++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888877788999999999999763222333333332 221 23579999999999764221 22
Q ss_pred HHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 177 VGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
+.+.+... ... .++++++||++|.|+ +++.+.+...
T Consensus 159 i~~~l~~~--~~~--~~~ii~vSA~~g~gi-~~L~e~L~~~ 194 (406)
T TIGR03680 159 IKEFVKGT--VAE--NAPIIPVSALHNANI-DALLEAIEKF 194 (406)
T ss_pred HHhhhhhc--ccC--CCeEEEEECCCCCCh-HHHHHHHHHh
Confidence 22222110 011 248999999999999 5555555543
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=135.12 Aligned_cols=175 Identities=21% Similarity=0.224 Sum_probs=129.4
Q ss_pred hcCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCch
Q psy12173 32 RQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQE 110 (224)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~ 110 (224)
+.+.+....++.....+-.....|.++|.|++|||||++++...+....+..+.|+.+....+.+++ .++.+-|.||..
T Consensus 176 ~~~~~G~~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI 255 (366)
T KOG1489|consen 176 KFSKPGLNGEERVIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGII 255 (366)
T ss_pred ccccCCCCCceEEEEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCcccc
Confidence 3344555667777777777889999999999999999999999886655566677777777777765 559999999955
Q ss_pred hHHH-------HHHhhccCCCEEEEEEECCCC---CCHHHHHHHHHHHHhc-CCCCCCcEEEEEeCCCCCCCCC--HHHH
Q psy12173 111 NVRR-------FWNTYFEDTDLLVFVVDSADP---SKLPVAAMELKNLLGD-QRLSTVPILVIANKQDVPGALS--AEEV 177 (224)
Q Consensus 111 ~~~~-------~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~--~~~~ 177 (224)
+-.. .+..+++.|+..+||+|++.+ +.++.....+.++-.+ ..+.+.|.++|+||+|+.+... .+++
T Consensus 256 ~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L 335 (366)
T KOG1489|consen 256 EGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSL 335 (366)
T ss_pred ccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHH
Confidence 3221 233457889999999999998 7888877777776554 3456789999999999964421 1444
Q ss_pred HhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 178 GVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
.+.++. ..++++||++++|+ +.+...+++
T Consensus 336 ~~~lq~---------~~V~pvsA~~~egl-~~ll~~lr~ 364 (366)
T KOG1489|consen 336 AKRLQN---------PHVVPVSAKSGEGL-EELLNGLRE 364 (366)
T ss_pred HHHcCC---------CcEEEeeeccccch-HHHHHHHhh
Confidence 444432 14999999999999 665555543
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=130.38 Aligned_cols=152 Identities=17% Similarity=0.221 Sum_probs=97.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------------CCC-------CCceeE-----------------EEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHN--------------LKP-------TEGFNI-----------------TILQ 95 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~--------------~~~-------t~~~~~-----------------~~~~ 95 (224)
+|+++|+.++|||||++++..+.|..... ... .+++.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999999766543110 000 111111 2233
Q ss_pred eCCeEEEEEEcCCchhHHHHHHhhcc--CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC
Q psy12173 96 KGEYTLNIFELGGQENVRRFWNTYFE--DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 173 (224)
.++..+.++||||++.+.......+. .+|++++|+|+..+.. .....+..+... .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 45688999999999998765554453 7899999999987633 333333333333 4789999999999865422
Q ss_pred H----HHHHhhcCccccc-------------------CcccceeEEEeecCCCCccccchH
Q psy12173 174 A----EEVGVALDLSSIS-------------------SRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 174 ~----~~~~~~~~~~~~~-------------------~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
. +++.+.+...... .....++++.+||.+|.|+ +++.
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi-~~L~ 215 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGL-DLLH 215 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCH-HHHH
Confidence 2 2233333311100 1122348999999999999 4444
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=145.39 Aligned_cols=115 Identities=21% Similarity=0.186 Sum_probs=81.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCceeEEEEEe----------------CCeEEEEEEcCCchhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS--HNLKPTEGFNITILQK----------------GEYTLNIFELGGQENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--~~~~~t~~~~~~~~~~----------------~~~~~~l~D~~G~~~~ 112 (224)
+.+.|+++|++++|||||+++|.+..+... ....++++........ ....+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 346899999999999999999998876431 1223344433322211 0124889999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
..++..+++.+|++++|+|+++...... ...+..+ .. .++|+++++||+|+..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt-~e~i~~l-~~---~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQT-QEALNIL-RM---YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhH-HHHHHHH-HH---cCCCEEEEEECCCccc
Confidence 9988888999999999999998532221 1222222 22 3789999999999964
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=144.20 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CCCCC--------------CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG--NTSLS--------------HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFW 116 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~--~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 116 (224)
.+|+++|+.++|||||+++|+.. .+... .....|+......+.+++..+.+|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999863 22210 011233344455677889999999999999999888
Q ss_pred HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCcccccCcccce
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDLSSISSRQHRI 193 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~ 193 (224)
...++.+|++++|+|+.++ .......++..... .++|+++++||+|+.+... .+++.+.+...........+
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 8889999999999999875 34555666666554 3789999999999865422 23333333211111122234
Q ss_pred eEEEeecCCCCc
Q psy12173 194 KLIATQAPSNLH 205 (224)
Q Consensus 194 ~~~~~Sa~~~~g 205 (224)
+++++||++|.+
T Consensus 157 pvl~~SA~~g~~ 168 (594)
T TIGR01394 157 PIVYASGRAGWA 168 (594)
T ss_pred cEEechhhcCcc
Confidence 899999999974
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-17 Score=128.95 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=83.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--------C----------CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSL--------S----------HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~--------~----------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
+|+++|+.|+|||||+++++...-.. . .....|.......+.+++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999998642110 0 01111233455667788999999999999999888
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
...+++.+|++++|+|+.++-.. ....++..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccC
Confidence 88889999999999999987432 33444444432 3789999999999875
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=141.36 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=99.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCCCCCceeEEEEE------------------eC--------CeE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS---LSHNLKPTEGFNITILQ------------------KG--------EYT 100 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~---~~~~~~~t~~~~~~~~~------------------~~--------~~~ 100 (224)
...++|+++|+.++|||||+.+|.+.... .+.....|+......+. .+ ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 45789999999999999999999653211 11011122221111100 00 257
Q ss_pred EEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HH
Q psy12173 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EE 176 (224)
Q Consensus 101 ~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~ 176 (224)
+.+|||||++++..........+|++++|+|++++.........+..+... ...|+++|+||+|+.+.... ++
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHHHHH
Confidence 999999999998876666677889999999999764222222333322221 23479999999999764222 22
Q ss_pred HHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 177 VGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
+.+.++.. ... .++++++||++|.|+ +.+.+.+...+
T Consensus 164 i~~~l~~~--~~~--~~~ii~vSA~~g~gI-~~L~~~L~~~l 200 (411)
T PRK04000 164 IKEFVKGT--VAE--NAPIIPVSALHKVNI-DALIEAIEEEI 200 (411)
T ss_pred HHHHhccc--cCC--CCeEEEEECCCCcCH-HHHHHHHHHhC
Confidence 22222110 011 238999999999999 55555665543
|
|
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-18 Score=125.08 Aligned_cols=156 Identities=17% Similarity=0.271 Sum_probs=128.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---C-CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---G-EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..++++++|+.|.|||++.++...+.|.. .+.+|++....+..+ . ...+..|||.|++.+......++-+..+.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~--~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcA 86 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEK--TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA 86 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhccccee--cccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEeccee
Confidence 57899999999999999999999999998 889999977776554 2 38899999999999999888888889999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|++||+...-+..++..|..++.... .++|+++++||.|........+ ... - .+..++.++++||+++.|.
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k---~v~--~--~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAK---PVS--F--HRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccccc---cce--e--eecccceeEEeeccccccc
Confidence 99999999989999999999998865 5799999999999865421111 111 1 1222349999999999999
Q ss_pred ccchHHHHHHH
Q psy12173 207 LHVSVVEAEQA 217 (224)
Q Consensus 207 ~~~~~~~i~~~ 217 (224)
+..|.-.+++.
T Consensus 158 ekPFl~LarKl 168 (216)
T KOG0096|consen 158 ERPFLWLARKL 168 (216)
T ss_pred ccchHHHhhhh
Confidence 98888766654
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=144.03 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=103.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc--CCCCCCC----------CCCCCCc----eeEEEEEeCCeEEEEEEcCCchhHHH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS--GNTSLSH----------NLKPTEG----FNITILQKGEYTLNIFELGGQENVRR 114 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~--~~~~~~~----------~~~~t~~----~~~~~~~~~~~~~~l~D~~G~~~~~~ 114 (224)
...+|+++|+.++|||||+++|+. +.+.... ....+.+ .....+.+++..+.+|||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 467999999999999999999996 3332210 0111222 23345566889999999999999999
Q ss_pred HHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCcccccCccc
Q psy12173 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSISSRQH 191 (224)
Q Consensus 115 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~ 191 (224)
.+..+++.+|++|+|+|+.++.. ......+..... .++|.++++||+|+...... +++.+.+..........
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 88889999999999999998632 233444444433 37899999999999765332 33333331101111112
Q ss_pred ceeEEEeecCCCCcc
Q psy12173 192 RIKLIATQAPSNLHH 206 (224)
Q Consensus 192 ~~~~~~~Sa~~~~gv 206 (224)
.++++++||++|.|.
T Consensus 159 ~~PVi~~SA~~G~~~ 173 (607)
T PRK10218 159 DFPIVYASALNGIAG 173 (607)
T ss_pred CCCEEEeEhhcCccc
Confidence 348999999999853
|
|
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-17 Score=121.15 Aligned_cols=128 Identities=30% Similarity=0.430 Sum_probs=101.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhcc---CCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFE---DTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~---~~d~ii~ 128 (224)
...|+++|+.+||||+|+-+|..+.+.. ..+++..+........-..+++|.|||.+.+.....++. .+.+++|
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~---TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRG---TVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccC---eeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 3589999999999999999999987554 334555666666666666899999999999987766666 7999999
Q ss_pred EEECCC-CCCHHHHHHHHHHHHhcC--CCCCCcEEEEEeCCCCCCCCCHHHHHhhcC
Q psy12173 129 VVDSAD-PSKLPVAAMELKNLLGDQ--RLSTVPILVIANKQDVPGALSAEEVGVALD 182 (224)
Q Consensus 129 v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 182 (224)
|+|... ..-.....+.++.++... ...++|+++++||.|+......+.+++.++
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LE 171 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLE 171 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHH
Confidence 999875 344677788888887765 345789999999999988877766655554
|
|
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=114.22 Aligned_cols=158 Identities=20% Similarity=0.292 Sum_probs=118.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-eEEEEEeC---CeEEEEEEcCCchhH-HHHHHhhccCCCE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF-NITILQKG---EYTLNIFELGGQENV-RRFWNTYFEDTDL 125 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~---~~~~~l~D~~G~~~~-~~~~~~~~~~~d~ 125 (224)
+..||+++|..++|||+++.++..++......+.||++- ....++.+ ...+.++||.|...+ ..+..++++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 457999999999999999999999887776677777763 33334332 268999999998777 5567888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++||+..+++||+.+...-..+-+....+.+|+++++||.|+.+. .+.+-.....+.+. ++.++++|...
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEk-------vkl~eVta~dR 160 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREK-------VKLWEVTAMDR 160 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhh-------eeEEEEEeccc
Confidence 9999999999999988776666666655567899999999999654 22222222222111 27889999988
Q ss_pred CccccchHHHHH
Q psy12173 204 LHHLHVSVVEAE 215 (224)
Q Consensus 204 ~gv~~~~~~~i~ 215 (224)
..+-+.|....-
T Consensus 161 ~sL~epf~~l~~ 172 (198)
T KOG3883|consen 161 PSLYEPFTYLAS 172 (198)
T ss_pred hhhhhHHHHHHH
Confidence 887566554443
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-18 Score=144.80 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=123.1
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
....++|+++|+.|+|||||+..+....|+. ..++-.+...-+.++ +.+...++|++..+..+......++.+|++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~--~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVD--AVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccc--cccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 3568999999999999999999999999887 555544433333333 457799999997777777767779999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCCCCH--HH-HHhhcCcccccCcccceeEEEeecC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGALSA--EE-VGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++.+++++++.+...|..++.... +..+|+|+|+||+|....... +. ..-.+. ..... ..+++|||+
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~---~f~Ei--EtciecSA~ 158 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMI---AFAEI--ETCIECSAL 158 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHH---HhHHH--HHHHhhhhh
Confidence 999999999999999998888887643 457999999999999876333 22 111110 00011 168999999
Q ss_pred CCCccccchHHHHHHHHHHh
Q psy12173 202 SNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~~ 221 (224)
+..++ .+.+..+++++..+
T Consensus 159 ~~~n~-~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 159 TLANV-SELFYYAQKAVIHP 177 (625)
T ss_pred hhhhh-Hhhhhhhhheeecc
Confidence 99999 55555777766544
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-18 Score=128.96 Aligned_cols=129 Identities=26% Similarity=0.400 Sum_probs=86.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---CCeEEEEEEcCCchhHHHHHHh---hccCCCE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---GEYTLNIFELGGQENVRRFWNT---YFEDTDL 125 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~D~~G~~~~~~~~~~---~~~~~d~ 125 (224)
...|+++|+.|+|||+|+.+|..+.+.. +..+ +..+.. ... .+..+.++|+|||++.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~--T~tS-~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP--TVTS-MENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-----B----SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC--eecc-ccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 4589999999999999999999997555 3322 233332 222 4568999999999998875444 4788999
Q ss_pred EEEEEECCC-CCCHHHHHHHHHHHHhcC--CCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcc
Q psy12173 126 LVFVVDSAD-PSKLPVAAMELKNLLGDQ--RLSTVPILVIANKQDVPGALSAEEVGVALDLS 184 (224)
Q Consensus 126 ii~v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 184 (224)
||||+|++. ...+.+..+.++.++... ....+|++|++||.|+........+++.++.+
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~E 140 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKE 140 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHH
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHH
Confidence 999999984 345677777888777653 23578999999999999887777776666543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=118.85 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=90.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCCeEEEEEEcCCch----------hHHHHHHhhc-
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGEYTLNIFELGGQE----------NVRRFWNTYF- 120 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~- 120 (224)
.|+++|++|+|||||++.+.++.+.. ...++.+. ....+..+ ..+.+|||||.. .+......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~--~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLA--RTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcee--eecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999655444 22333332 22222233 389999999943 2333333333
Q ss_pred --cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 121 --EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 121 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
...+++++++|.....+... ..+...+.. .+.|+++++||+|+................ ........+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKE-LKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHH-HHhccCCCceEEE
Confidence 34678999999987633221 122222232 258999999999996542222221111100 0001112389999
Q ss_pred ecCCCCccccchHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~ 216 (224)
||+++.|+ +++.+.+.+
T Consensus 152 Sa~~~~~~-~~l~~~l~~ 168 (170)
T cd01876 152 SSLKGQGI-DELRALIEK 168 (170)
T ss_pred ecCCCCCH-HHHHHHHHH
Confidence 99999999 555555544
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=127.29 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=88.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC--C----------CC----------CCCCCCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTS--L----------SH----------NLKPTEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~--~----------~~----------~~~~t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
.+|+++|++|+|||||+++|+...-. . .+ ....++......+.+++.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 58999999999999999999853211 0 00 00112223445677789999999999999
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDL 183 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~ 183 (224)
++.......++.+|++|+|+|++++... ....++. .... .++|+++++||+|+..... .+++++.++.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCRL---RGIPIITFINKLDREGRDPLELLDEIEEELGI 153 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHCC
Confidence 9887677778999999999999876332 2233333 3322 4789999999999876533 4566665554
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=126.31 Aligned_cols=148 Identities=17% Similarity=0.236 Sum_probs=111.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCch--------hHHHH-HHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQE--------NVRRF-WNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~-~~~~~~ 121 (224)
..++|++.|.||+|||||++.+++.+.......+.|.+.+.+++..+...++++||||.- ....+ ....-+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 578999999999999999999999986665566788899999999999999999999921 11111 111223
Q ss_pred CCCEEEEEEECCC--CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 122 DTDLLVFVVDSAD--PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 122 ~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
-.++|+|++|.+. +.+++.+...+.++... .+.|+++|.||.|..+....+++...+..... .....++
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~------~~~~~~~ 317 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGG------EEPLKIS 317 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhcc------cccccee
Confidence 4688999999986 56788888888888776 35999999999999876556665554432211 1355677
Q ss_pred cCCCCccc
Q psy12173 200 APSNLHHL 207 (224)
Q Consensus 200 a~~~~gv~ 207 (224)
+..+.+++
T Consensus 318 ~~~~~~~d 325 (346)
T COG1084 318 ATKGCGLD 325 (346)
T ss_pred eeehhhHH
Confidence 77777773
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=129.57 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=120.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC-CeEEEEEEcCCc---------hhHHHHHHhh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQ---------ENVRRFWNTY 119 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~D~~G~---------~~~~~~~~~~ 119 (224)
...+.|.++|-+|+|||||+|+|++......+..+.|+++....+... +..+.+-||.|- +.|++....
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE- 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE- 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-
Confidence 456899999999999999999999887666678888999999999886 589999999993 345655554
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
...+|.+++|+|+++++... ..+....++.......+|+++|.||+|+..+.. ....+... .. ..+.+|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~-~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~-----~~--~~v~iS 337 (411)
T COG2262 269 VKEADLLLHVVDASDPEILE-KLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERG-----SP--NPVFIS 337 (411)
T ss_pred hhcCCEEEEEeecCChhHHH-HHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhc-----CC--CeEEEE
Confidence 67899999999999995444 344455555655556799999999999876533 11111110 01 488999
Q ss_pred cCCCCccccchHHHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~ 219 (224)
|++|.|+ +.+...+.+.+.
T Consensus 338 A~~~~gl-~~L~~~i~~~l~ 356 (411)
T COG2262 338 AKTGEGL-DLLRERIIELLS 356 (411)
T ss_pred eccCcCH-HHHHHHHHHHhh
Confidence 9999999 888888877766
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=133.89 Aligned_cols=154 Identities=18% Similarity=0.074 Sum_probs=97.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC-------C---------CCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN-------T---------SLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~-------~---------~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
.+.++|+++|+.++|||||+++|++.. + ..+.....|.+.....+..++..+.+|||||+++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 467899999999999999999997421 0 000112234444344444467889999999999988
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcE-EEEEeCCCCCCCCC-HH----HHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPI-LVIANKQDVPGALS-AE----EVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 187 (224)
.........+|++++|+|+.++.. ....+.+..+.. .++|. |+++||+|+.+... .+ ++.+.+.....
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~- 163 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF- 163 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC-
Confidence 766666788999999999998522 223333333332 25665 57899999975321 11 23333321111
Q ss_pred CcccceeEEEeecCCCCccccch
Q psy12173 188 SRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
....++++++||++|.+.....
T Consensus 164 -~~~~~~ii~vSa~~g~~g~~~~ 185 (394)
T TIGR00485 164 -PGDDTPIIRGSALKALEGDAEW 185 (394)
T ss_pred -CccCccEEECccccccccCCch
Confidence 1112489999999986433433
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=138.99 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=78.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCceeEEEEEeC----C------------eEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS--HNLKPTEGFNITILQKG----E------------YTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--~~~~~t~~~~~~~~~~~----~------------~~~~l~D~~G~~~ 111 (224)
.+.+.|+++|++++|||||+++|.+...... ....++++....+.... + ..+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3567899999999999999999987653321 11222344332222110 0 1278999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
|...+...+..+|++++|+|+++.-. ......+. +... .++|+++++||+|+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~-~qt~e~i~-~~~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQ-PQTIEAIN-ILKR---RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCC-HhHHHHHH-HHHH---cCCCEEEEEECcCCc
Confidence 99988888899999999999998421 11122222 2222 478999999999985
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-16 Score=133.68 Aligned_cols=148 Identities=20% Similarity=0.127 Sum_probs=95.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS----------------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
..+++|+++|+.++|||||+++|++.... .+.....|.+.....+..++..+.++||||+++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 45789999999999999999999863110 00011223333333344466789999999999988
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-HH----HHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-AE----EVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 187 (224)
.........+|++++|+|+.++-. ....+.+..+. . .++| +|+++||+|+.+... .+ ++.+.+....+.
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~-~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLAR-Q---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 777667789999999999987522 22333333332 2 3677 788999999974321 11 222222211111
Q ss_pred CcccceeEEEeecCCCC
Q psy12173 188 SRQHRIKLIATQAPSNL 204 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~ 204 (224)
.. .++++++||++|.
T Consensus 165 ~~--~~~ii~vSa~~g~ 179 (394)
T PRK12736 165 GD--DIPVIRGSALKAL 179 (394)
T ss_pred cC--CccEEEeeccccc
Confidence 11 2489999999984
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-16 Score=132.42 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=110.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---CCeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---GEYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+.+-|+++|+...|||||+..+..........-..|-....+.+.. +...+.++|||||+.|..++.....-+|.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 4568999999999999999999987754432223343344455554 3468999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCccc--ceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQH--RIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~g 205 (224)
+|++++++- ..+..+.+..... .++|++++.||+|.++. .++.....+....+....| .+.++++||++|+|
T Consensus 84 LVVa~dDGv-~pQTiEAI~hak~----a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGV-MPQTIEAINHAKA----AGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCc-chhHHHHHHHHHH----CCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 999999972 2222333333322 58999999999999854 3444444443333322222 36899999999999
Q ss_pred cccchH
Q psy12173 206 HLHVSV 211 (224)
Q Consensus 206 v~~~~~ 211 (224)
+++.+.
T Consensus 158 i~eLL~ 163 (509)
T COG0532 158 IDELLE 163 (509)
T ss_pred HHHHHH
Confidence 954443
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=128.49 Aligned_cols=201 Identities=18% Similarity=0.145 Sum_probs=144.2
Q ss_pred HHHHHhhhhhhHHHHHhhcCCCCccccccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEE
Q psy12173 15 IIASVCTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL 94 (224)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~ 94 (224)
.-..++........+.++.+.+..+.++.....+-....-|.++|.|++|||||++.+...+....+..+.|+.++...+
T Consensus 122 ~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV 201 (369)
T COG0536 122 RGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVV 201 (369)
T ss_pred CCCccchhhcCcccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEE
Confidence 33445566666777888888899999999998888889999999999999999999999988666566677877777777
Q ss_pred Ee-CCeEEEEEEcCCchhHHH-------HHHhhccCCCEEEEEEECCCCCC---HHHHHHHHHHHHhc-CCCCCCcEEEE
Q psy12173 95 QK-GEYTLNIFELGGQENVRR-------FWNTYFEDTDLLVFVVDSADPSK---LPVAAMELKNLLGD-QRLSTVPILVI 162 (224)
Q Consensus 95 ~~-~~~~~~l~D~~G~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~piilv 162 (224)
.. ....|.+-|.||..+-.+ .+..+++.|.++++|+|++..+. .++......++-.+ ..+..+|.+||
T Consensus 202 ~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv 281 (369)
T COG0536 202 RVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVV 281 (369)
T ss_pred EecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEE
Confidence 75 556799999999554322 23445788999999999997653 55555555555444 34568999999
Q ss_pred EeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 163 ANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 163 ~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
+||+|+... ...++..+.+.. ...|...++ +||.++.|+ +.+...+.+.+.+.
T Consensus 282 ~NKiD~~~~~e~~~~~~~~l~~----~~~~~~~~~-ISa~t~~g~-~~L~~~~~~~l~~~ 335 (369)
T COG0536 282 LNKIDLPLDEEELEELKKALAE----ALGWEVFYL-ISALTREGL-DELLRALAELLEET 335 (369)
T ss_pred EeccCCCcCHHHHHHHHHHHHH----hcCCCccee-eehhcccCH-HHHHHHHHHHHHHh
Confidence 999996554 233333333321 112211222 999999999 66666776666543
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-16 Score=124.36 Aligned_cols=137 Identities=18% Similarity=0.088 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTS------------------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~------------------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
+|+++|++++|||||+++|+...-. .+.....|+......+.+++.++.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999742110 0011223444556677888999999999999988888
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC---CHHHHHhhcCcccccCcccc
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL---SAEEVGVALDLSSISSRQHR 192 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~ 192 (224)
+...++.+|++++|+|+.+...- .....+..... .++|+++++||+|+.+.. ..+++.+.++...+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~----~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~------ 149 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR----YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPV------ 149 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCce------
Confidence 88889999999999999886332 22333443332 478999999999987532 23445555543211
Q ss_pred eeEEEeecC
Q psy12173 193 IKLIATQAP 201 (224)
Q Consensus 193 ~~~~~~Sa~ 201 (224)
...+++|+.
T Consensus 150 ~~~~Pisa~ 158 (270)
T cd01886 150 PLQLPIGEE 158 (270)
T ss_pred EEEeccccC
Confidence 145666665
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=115.93 Aligned_cols=150 Identities=34% Similarity=0.562 Sum_probs=125.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.-|++++|-.|+|||||++.|.+.... ...||..++...+...+..++.+|++|+...++.+..++..+|++++.+|
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~---qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvd 96 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVD 96 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccc---ccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeee
Confidence 358999999999999999999988733 45678888888889999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc------------CcccceeEEEee
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS------------SRQHRIKLIATQ 199 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~S 199 (224)
+.+.+++.+.+..+..++........|+++.+||.|.+.....++..-.+.+.... .+.. .++.||
T Consensus 97 a~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~--evfmcs 174 (193)
T KOG0077|consen 97 AYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPL--EVFMCS 174 (193)
T ss_pred hhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeE--EEEEEE
Confidence 99999999999999998887666789999999999999988777766555543221 1333 566777
Q ss_pred cCCCCcc
Q psy12173 200 APSNLHH 206 (224)
Q Consensus 200 a~~~~gv 206 (224)
...+.|-
T Consensus 175 i~~~~gy 181 (193)
T KOG0077|consen 175 IVRKMGY 181 (193)
T ss_pred EEccCcc
Confidence 7666654
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=135.57 Aligned_cols=152 Identities=20% Similarity=0.132 Sum_probs=100.4
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCC------C----------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNT------S----------LSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~------~----------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.....++|+++|++++|||||+++|+.... . .+.....|++.....+..++..+.++|+||++.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 345789999999999999999999995211 0 001112233333444555778999999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-HH----HHHhhcCccc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-AE----EVGVALDLSS 185 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~ 185 (224)
|.......+..+|++++|+|+.++.. ....+.+..... .++| +++++||+|+.+... .+ ++.+.+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 98877777889999999999997632 333444444332 3677 788999999975311 12 2222222111
Q ss_pred ccCcccceeEEEeecCCCCcc
Q psy12173 186 ISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv 206 (224)
+.. .+++++++||.+|.++
T Consensus 232 ~~~--~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 232 FPG--DDIPIISGSALLALEA 250 (478)
T ss_pred CCc--CcceEEEEEccccccc
Confidence 111 2348999999998654
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=134.49 Aligned_cols=152 Identities=16% Similarity=0.078 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC---------------------------------CCCCCCCCceeEEEEEeCCe
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSL---------------------------------SHNLKPTEGFNITILQKGEY 99 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~~~~ 99 (224)
++|+++|+.++|||||+.+|+...-.. +.....|.+.....+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999997432110 00111233444555666788
Q ss_pred EEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHHH
Q psy12173 100 TLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEEV 177 (224)
Q Consensus 100 ~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~ 177 (224)
++.++||||++.|.......+..+|++++|+|+..+..- ...+.+...... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHHH
Confidence 999999999999977666678999999999999876321 122222222221 2346899999999975311 1222
Q ss_pred HhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 178 GVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
.+.+...........++++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2222100000011124899999999999964
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.9e-16 Score=132.26 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=101.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-------------------------------SLSHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 98 (224)
..+++|+++|+.++|||||+.+|+...- ..+.....|++.....+..++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4678999999999999999999974211 000111223344455566678
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCH-------HHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKL-------PVAAMELKNLLGDQRLSTV-PILVIANKQDVPG 170 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~ 170 (224)
..+.++|+||+++|.......+..+|++|+|+|+.+. .+ ....+.+..... .++ ++|+++||+|+.+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCc
Confidence 9999999999999998888889999999999999974 22 233333333222 356 5788999999862
Q ss_pred C-CC---H----HHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 171 A-LS---A----EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 171 ~-~~---~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
. .. . +++.+.++...+... .++|+++||++|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~--~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPD--KIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcc--cceEEEEeccccccccc
Confidence 1 11 2 223333321111111 24899999999999954
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=122.04 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=79.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CC----------CCCCceeEEEEEe-----CCeEEEEEEcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSH---------NL----------KPTEGFNITILQK-----GEYTLNIFELGG 108 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~---------~~----------~~t~~~~~~~~~~-----~~~~~~l~D~~G 108 (224)
++|+++|+.++|||||+++|+...+.... .+ ..++......+.+ ....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 37899999999999999999975533210 00 0111111222222 247899999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
+.++......++..+|++++|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 99998888888999999999999998765532 333343332 358999999999985
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-16 Score=132.19 Aligned_cols=150 Identities=19% Similarity=0.119 Sum_probs=95.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC-------CCC---------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG-------NTS---------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~-------~~~---------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
.+.++|+++|++++|||||+++|++. ++. .+.....|.+.....+..++.++.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 46789999999999999999999862 100 00011123333333344466789999999999887
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEE-EEEeCCCCCCCCC-HH----HHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPIL-VIANKQDVPGALS-AE----EVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 187 (224)
......+..+|++++|+|+.+... ....+.+..+. . .++|.+ +++||+|+.+... .+ ++.+.+....+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~-~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~- 163 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR-Q---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF- 163 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC-
Confidence 776677889999999999987532 22333343332 2 367755 6899999974311 11 22222211111
Q ss_pred CcccceeEEEeecCCCCcc
Q psy12173 188 SRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv 206 (224)
...+++++++||++|.|.
T Consensus 164 -~~~~~~ii~~Sa~~g~n~ 181 (396)
T PRK12735 164 -PGDDTPIIRGSALKALEG 181 (396)
T ss_pred -CcCceeEEecchhccccC
Confidence 111248999999999764
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-16 Score=113.55 Aligned_cols=134 Identities=18% Similarity=0.305 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCC----chhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG----QENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~ii~v 129 (224)
||+++|+.|||||||+++|.+..... ..|.. +.+.+ ..+|||| +..+...+......||.+++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~----~KTq~-----i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY----KKTQA-----IEYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc----Cccce-----eEecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 89999999999999999999876322 22222 22222 4599999 444555445556799999999
Q ss_pred EECCCCCC-HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC-CCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDVP-GALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
.|++++.+ +... +.. ...+|+|=|+||+|+. ++.+.+..++.++..... ++|++|+.+|+|+
T Consensus 71 ~dat~~~~~~pP~---fa~------~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~------~if~vS~~~~eGi- 134 (143)
T PF10662_consen 71 QDATEPRSVFPPG---FAS------MFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK------EIFEVSAVTGEGI- 134 (143)
T ss_pred ecCCCCCccCCch---hhc------ccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC------CeEEEECCCCcCH-
Confidence 99999744 2211 111 1368999999999998 444555555566543322 6799999999999
Q ss_pred cchHHHHH
Q psy12173 208 HVSVVEAE 215 (224)
Q Consensus 208 ~~~~~~i~ 215 (224)
+++.+.+.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 66665543
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=135.35 Aligned_cols=157 Identities=15% Similarity=0.080 Sum_probs=99.0
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------CCCCCCCceeEEEEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLS---------------------------------HNLKPTEGFNITILQ 95 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~---------------------------------~~~~~t~~~~~~~~~ 95 (224)
.+..++|+++|++++|||||+.+|+...-... .....|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35679999999999999999999985431110 001123334444566
Q ss_pred eCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--C
Q psy12173 96 KGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--S 173 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~ 173 (224)
.++.++.++||||++.+.......+..+|++++|+|+..+-.-. ..+.+. +.... ...|+++++||+|+.+.. .
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~-l~~~l--g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSF-IATLL--GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHH-HHHHh--CCCceEEEEEeeccccchhHH
Confidence 67789999999999998766655679999999999998752211 111111 12111 135789999999997431 1
Q ss_pred HHHHHhhcCcccccCc-ccceeEEEeecCCCCccccc
Q psy12173 174 AEEVGVALDLSSISSR-QHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 174 ~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.+++.+.+........ ...++++++||++|.|+++.
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2233322211000000 11248999999999999643
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=133.11 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=101.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT--S-----------------------------LSHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~--~-----------------------------~~~~~~~t~~~~~~~~~~~~ 98 (224)
...++|+++|+.++|||||+.+|+...- . .+.....|++.....+.+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4678999999999999999999985210 0 00111223344455566778
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCC---H---HHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCC-
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSK---L---PVAAMELKNLLGDQRLSTVP-ILVIANKQDVPG- 170 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~- 170 (224)
..+.++||||+.+|.......+..+|++++|+|+..+.- + ....+.+..... .++| +|+++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccccc
Confidence 999999999999998887778899999999999997621 1 223333333322 3655 789999999532
Q ss_pred ---CCCHHHHHhhc----CcccccCcccceeEEEeecCCCCcccc
Q psy12173 171 ---ALSAEEVGVAL----DLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 171 ---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+...+++.+.+ ....+... +++++++||.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~--~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPE--KVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcc--cceEEEeecccCCCccc
Confidence 12233333322 21111112 34999999999999954
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-16 Score=132.88 Aligned_cols=150 Identities=20% Similarity=0.138 Sum_probs=97.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC----------------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL----------------SHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
...++|+++|++++|||||+++|++..-.. +.....|.+.....+..++.++.++||||+..+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 467899999999999999999999642110 0011122222333444567889999999999887
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-HH----HHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-AE----EVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 187 (224)
......+..+|++++|+|+..+-. ....+.+.. ... .++| +|+++||+|+.+... .+ ++.+.+....+.
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~-~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILL-AKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHH-HHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 777777889999999999987622 223333333 332 3678 778999999975321 11 222222211111
Q ss_pred CcccceeEEEeecCCCCcc
Q psy12173 188 SRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv 206 (224)
.. ..+++++||.+|.|+
T Consensus 165 ~~--~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 165 GD--DIPIVSGSALLALEA 181 (409)
T ss_pred CC--cceEEEcchhhcccc
Confidence 11 248999999999865
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=114.17 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=104.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCceeEEEEEeCCeEEEEEEcCC----------chhHHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL--SHNLKPTEGFNITILQKGEYTLNIFELGG----------QENVRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~ 117 (224)
.....|+++|-.++|||||+|+|++.+-.. +.....|--.++..+ ++ .+.++|+|| .+.+.....
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC-cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 356799999999999999999999977322 112222322333332 22 389999999 334444444
Q ss_pred hhcc---CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HHHHhhcCcccccCcc
Q psy12173 118 TYFE---DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EEVGVALDLSSISSRQ 190 (224)
Q Consensus 118 ~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~ 190 (224)
.|++ +..++++++|+..+ ....+..+.+++.. .++|+++++||+|....... ..+.+.+... ..
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~----~~ 169 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP----PP 169 (200)
T ss_pred HHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC----CC
Confidence 4443 46789999999987 55555666677666 58999999999999775333 3333333321 12
Q ss_pred cceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 191 HRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+...++..|+.++.|+ +++...|.+.+..
T Consensus 170 ~~~~~~~~ss~~k~Gi-~~l~~~i~~~~~~ 198 (200)
T COG0218 170 DDQWVVLFSSLKKKGI-DELKAKILEWLKE 198 (200)
T ss_pred ccceEEEEecccccCH-HHHHHHHHHHhhc
Confidence 2112888899999998 7777777776643
|
|
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-18 Score=125.75 Aligned_cols=165 Identities=19% Similarity=0.220 Sum_probs=129.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC---eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE---YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
...++++++|+.|+|||+++++.....|.. .+..|++ +......+++ +.+.+||..||+++..+..-+++.++
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~--~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSY--HYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHH--HHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 456899999999999999999999998887 6666766 3444456654 67889999999999999999999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcC---CCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCcccccCcccceeEEEe
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQ---RLSTVPILVIANKQDVPGALS---AEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+..+|||+++..+|+....|..++-... +....|+|+..||+|...... ...+.+..+ ......++++
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k------engf~gwtet 174 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK------ENGFEGWTET 174 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh------ccCccceeee
Confidence 9999999999999999999998886653 334578999999999876522 223333322 2222379999
Q ss_pred ecCCCCccccchHHHHHHHHHHhh
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~~~~ 222 (224)
|+|.+.|++|..-..+.+++.+.-
T Consensus 175 s~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 175 SAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred ccccccChhHHHHHHHHHHHhhcc
Confidence 999999997777777777776653
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=127.22 Aligned_cols=149 Identities=19% Similarity=0.114 Sum_probs=95.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS----------------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
...++|+++|+.++|||||+++|+..... .+.....|.+.....+..++.++.++||||+.++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 46789999999999999999999863110 00011223333333344467889999999999887
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEE-EEEeCCCCCCCCC-HH----HHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPIL-VIANKQDVPGALS-AE----EVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 187 (224)
......+..+|++++|+|+.++-. ....+.+.. ... .++|.+ +++||+|+.+... .+ ++.+.+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~-~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILL-ARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHH-HHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777677899999999999987622 222333333 333 367865 6899999974311 11 222222211111
Q ss_pred CcccceeEEEeecCCCCc
Q psy12173 188 SRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~g 205 (224)
..+++++++||++|.+
T Consensus 165 --~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 165 --GDDTPIIRGSALKALE 180 (396)
T ss_pred --ccCCcEEEeecccccC
Confidence 1134899999999864
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=136.63 Aligned_cols=155 Identities=15% Similarity=0.068 Sum_probs=97.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------C------------------CCCCCCceeEEEEEe
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS---------------H------------------NLKPTEGFNITILQK 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~---------------~------------------~~~~t~~~~~~~~~~ 96 (224)
...++|+++|++++|||||+++|+...-... + ....|.+.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 3467899999999999999999996431110 0 011123344455666
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCH
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSA 174 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 174 (224)
++.++.++||||++.+.......+..+|++++|+|+..+.. ....+.+..+... ...++++++||+|+.+. ...
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh---CCCeEEEEEEecccccchhHHH
Confidence 77899999999999887666666889999999999987632 1112222222212 23678999999999742 112
Q ss_pred HHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 175 EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+++.+.+..........+++++++||++|.|+++
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 2222222100000011123799999999999964
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-15 Score=128.14 Aligned_cols=116 Identities=19% Similarity=0.143 Sum_probs=81.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC------CC----------CCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG------NT----------SLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~------~~----------~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
..+++|+++|+.++|||||+++|.+. .. ..+.....|.+.....+..++.++.++||||+..+.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 46789999999999999999999722 10 011112334444455555577899999999999887
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCC
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPG 170 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 170 (224)
.........+|++++|+|+.++.. .+..+.+. +... .++| +|+++||+|+.+
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~-~~~~---~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHIL-LARQ---VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHH-HHHH---cCCCeEEEEEEeeccCC
Confidence 766666778999999999987632 22233333 3333 3678 578999999975
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=116.89 Aligned_cols=158 Identities=12% Similarity=0.121 Sum_probs=92.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce---e--EEEEEe-CCeEEEEEEcCCchhH----HH-HHHhhcc
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF---N--ITILQK-GEYTLNIFELGGQENV----RR-FWNTYFE 121 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~---~--~~~~~~-~~~~~~l~D~~G~~~~----~~-~~~~~~~ 121 (224)
++|+++|++|+|||||+|.+.+..+... ...+.+. . ...+.. ....+.+|||||.... .. .....+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--GAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--CccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 6899999999999999999998664331 1111110 1 111111 1247899999996432 11 1223367
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-C--------CHHHHHhhcCccc---ccC-
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-L--------SAEEVGVALDLSS---ISS- 188 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~--------~~~~~~~~~~~~~---~~~- 188 (224)
.+|+++++.+ +++......+...+.. .+.|+++|+||+|+... . ..+++.+.+.... ...
T Consensus 80 ~~d~~l~v~~----~~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISS----TRFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeC----CCCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 8899988843 2355555555555554 36899999999998432 1 1122221111110 000
Q ss_pred cccceeEEEeecC--CCCccccchHHHHHHHHHH
Q psy12173 189 RQHRIKLIATQAP--SNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 189 ~~~~~~~~~~Sa~--~~~gv~~~~~~~i~~~l~~ 220 (224)
.....+++.+|+. .++|+ ..+.+.+...|-.
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~-~~l~~~~~~~l~~ 185 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDF-PKLRETLLKDLPA 185 (197)
T ss_pred CCCCCCEEEEeCCChhhcCh-HHHHHHHHHHhhH
Confidence 0111289999998 56777 7777777666653
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=129.42 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=102.5
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCCC--CceeEE---------------EEEe-----------
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNT---SLSHNLKPT--EGFNIT---------------ILQK----------- 96 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~---~~~~~~~~t--~~~~~~---------------~~~~----------- 96 (224)
..+..++|+++|+...|||||+++|++... ..+-....| ++|... ....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 446789999999999999999999997432 111111112 222211 0000
Q ss_pred -----CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 97 -----GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 97 -----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
-...+.++|+||++.|..........+|++++|+|+.++....+..+.+.. .... .-.++++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i-~~~l--gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAA-VEIM--KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHH-HHHc--CCCcEEEEEecccccCH
Confidence 024789999999999988777778899999999999975222223333332 2221 23578999999999754
Q ss_pred CCH----HHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 172 LSA----EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 172 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
... +++.+.+... ....++++++||++|.|+ +.+.+.+.+.
T Consensus 187 ~~~~~~~~ei~~~l~~~----~~~~~~iipVSA~~G~nI-~~Ll~~L~~~ 231 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGT----IADNAPIIPISAQLKYNI-DVVLEYICTQ 231 (460)
T ss_pred HHHHHHHHHHHHHHHhh----ccCCCeEEEeeCCCCCCH-HHHHHHHHhh
Confidence 222 2222222110 012348999999999999 6666666653
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=123.44 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=109.5
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--CceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
..++.+-|.++|+...|||||+..|..........-..| +|.....+. ++..+++.|||||.-|..++.....-+|.
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 345778899999999999999999998764432122223 333333333 67899999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccc--ccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSS--ISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+.+.|+- +.+..+-+... ...+.|+|+++||+|.++. +++.....+-... ....+.+++++++||++|
T Consensus 228 vVLVVAadDGV-mpQT~EaIkhA----k~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 228 VVLVVAADDGV-MPQTLEAIKHA----KSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEEEccCCc-cHhHHHHHHHH----HhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 99999999872 22222223322 2258999999999998765 4444444442222 223455679999999999
Q ss_pred Cccc
Q psy12173 204 LHHL 207 (224)
Q Consensus 204 ~gv~ 207 (224)
.|++
T Consensus 302 ~nl~ 305 (683)
T KOG1145|consen 302 ENLD 305 (683)
T ss_pred CChH
Confidence 9994
|
|
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-15 Score=115.99 Aligned_cols=124 Identities=22% Similarity=0.212 Sum_probs=86.2
Q ss_pred ccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCCeEEEEEEcCCchhHH---------
Q psy12173 44 VSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGEYTLNIFELGGQENVR--------- 113 (224)
Q Consensus 44 ~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~D~~G~~~~~--------- 113 (224)
....+..+..+|+++|.||+|||||.|.+.+.+....+.-..|+. -....+..+..++.++||||...-.
T Consensus 64 rde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~ 143 (379)
T KOG1423|consen 64 RDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMM 143 (379)
T ss_pred CCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHH
Confidence 334566789999999999999999999999998766444444444 3344455678999999999943211
Q ss_pred ---HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 114 ---RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 114 ---~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+........+|.+++|+|+++..... .-+.+..+... .++|-++|.||.|....
T Consensus 144 s~lq~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~y---s~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 144 SVLQNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEY---SKIPSILVMNKIDKLKQ 200 (379)
T ss_pred HhhhCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHH---hcCCceeeccchhcchh
Confidence 11233467899999999999742211 12223333333 57899999999997553
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=102.82 Aligned_cols=106 Identities=24% Similarity=0.344 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEEEeCCeEEEEEEcCCchh---------HHHHHHhhccCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQKGEYTLNIFELGGQEN---------VRRFWNTYFEDT 123 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~~~ 123 (224)
+|+++|.+|+|||||+|+|++.+... ......|.......+..++..+.++||||... ........+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999865322 22333444555566778889999999999532 111223335899
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANK 165 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 165 (224)
|++++|+|.+++ .-....+.+..+ + .++|+++|+||
T Consensus 81 d~ii~vv~~~~~-~~~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP-ITEDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH-SHHHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHH-h----cCCCEEEEEcC
Confidence 999999997772 112233333344 2 48999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-15 Score=133.66 Aligned_cols=116 Identities=21% Similarity=0.122 Sum_probs=89.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCC--------C----------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTS--------L----------SHNLKPTEGFNITILQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~--------~----------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~ 112 (224)
..++|+++|+.++|||||+++|+..... . +..+..|+......+.+++..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 4679999999999999999999853210 0 002334556666778888999999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
...+..+++.+|++++|+|++++...... ..+..+.. .++|+++++||+|+...
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 88888889999999999999987665543 33333322 37899999999998764
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=127.90 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=115.1
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCC---------------CCCCCCCCCceeEEEEEeCC---eEEEEEEcCCc
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTS---------------LSHNLKPTEGFNITILQKGE---YTLNIFELGGQ 109 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~---------------~~~~~~~t~~~~~~~~~~~~---~~~~l~D~~G~ 109 (224)
...+..++.++-+...|||||..+|+..--. .+.+...|+-.....+.+.+ ..++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 3367889999999999999999999853311 11233334444555566655 89999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCcccc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDLSSI 186 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~ 186 (224)
.+|..-....+..||++|+|+|++.+-..+.....+..+- .+..+|.|+||+|++.... ..++.+.+++..
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~- 209 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPP- 209 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc-
Confidence 9999877777899999999999999866666666666663 3688999999999987632 233444444332
Q ss_pred cCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 187 SSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
.+++.+|||+|.|+++ +.+++.+.
T Consensus 210 ------~~~i~vSAK~G~~v~~-lL~AII~r 233 (650)
T KOG0462|consen 210 ------AEVIYVSAKTGLNVEE-LLEAIIRR 233 (650)
T ss_pred ------cceEEEEeccCccHHH-HHHHHHhh
Confidence 2899999999999944 55555443
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=116.49 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=83.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--------C----------CCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLS--------H----------NLKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~--------~----------~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
+|+++|++|+|||||++++........ + ....++......+.+++..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999975331110 0 0122334455667778899999999999988877
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
....+..+|++++|+|++++..... ...+..+.. .++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE----AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCccCCC
Confidence 7788999999999999998755432 233333322 47899999999998765
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-15 Score=115.87 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=79.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------CCCCCCCceeEEEEEeC----------CeEEEEEEc
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLS----------------HNLKPTEGFNITILQKG----------EYTLNIFEL 106 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~----------~~~~~l~D~ 106 (224)
++|+++|+.++|||||+.+|+...-... .....|+......+.+. +..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3799999999999999999985431110 01111222222222232 678999999
Q ss_pred CCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 107 GGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 107 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
||++.+.......++.+|++++|+|+.++..... ...+..... .++|+++++||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 9999999988888999999999999998755443 333444333 368999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=127.04 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=90.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC--CCC-------------C-------CCCCCCceeEEEEEeCCeEEEEEEcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT--SLS-------------H-------NLKPTEGFNITILQKGEYTLNIFELG 107 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~--~~~-------------~-------~~~~t~~~~~~~~~~~~~~~~l~D~~ 107 (224)
.+..+|+++|++++|||||+++|+...- ... . ....++......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999974211 000 0 00112223345577788999999999
Q ss_pred CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCc
Q psy12173 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDL 183 (224)
Q Consensus 108 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~ 183 (224)
|+..+.......++.+|++|+|+|++++-.. ....++.. ... .++|+++++||+|+..... .+++++.++.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~-~~~---~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEV-CRL---RDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHH-HHh---cCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 9999988777788999999999999986322 22333333 222 4799999999999876532 3556665554
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=115.14 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=111.3
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH-------HHHhhc
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR-------FWNTYF 120 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~ 120 (224)
.+....+++++|.|++|||||++.|++-+.......+.|+......+.+++.+++++|+||.....+ ......
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3456789999999999999999999998866555666788888889999999999999998543222 233457
Q ss_pred cCCCEEEEEEECCCCCC-HHHHHH----------------------------------------HHHHHHhcC-------
Q psy12173 121 EDTDLLVFVVDSADPSK-LPVAAM----------------------------------------ELKNLLGDQ------- 152 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s-~~~~~~----------------------------------------~~~~~~~~~------- 152 (224)
+.||.+++|+|+..... .+-+.+ .+..++.+-
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 89999999999996422 111111 111111110
Q ss_pred -----------------CCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHH
Q psy12173 153 -----------------RLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 153 -----------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
+..-+|.++|.||.|+......+.+.+.. ..+++||..+.|+ +++.+.+.
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~------------~~v~isa~~~~nl-d~L~e~i~ 285 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP------------NSVPISAKKGINL-DELKERIW 285 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc------------ceEEEecccCCCH-HHHHHHHH
Confidence 01146889999999998754444443333 6889999999999 67776666
Q ss_pred HHH
Q psy12173 216 QAM 218 (224)
Q Consensus 216 ~~l 218 (224)
+.|
T Consensus 286 ~~L 288 (365)
T COG1163 286 DVL 288 (365)
T ss_pred Hhh
Confidence 654
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-14 Score=117.22 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=57.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe------------------------CCeEEEEEEcCCc-
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK------------------------GEYTLNIFELGGQ- 109 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~l~D~~G~- 109 (224)
|+++|.+++|||||+++++...+...+..+.|.+++.....+ ...++.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999998765433334444444433221 2368999999997
Q ss_pred ---hhHHHH---HHhhccCCCEEEEEEECCC
Q psy12173 110 ---ENVRRF---WNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 110 ---~~~~~~---~~~~~~~~d~ii~v~d~~~ 134 (224)
.+++.+ ....++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 344443 2335899999999999973
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-14 Score=129.06 Aligned_cols=143 Identities=19% Similarity=0.111 Sum_probs=97.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC-----CC-------------CCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL-----SH-------------NLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-----~~-------------~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
++.++|+++|++++|||||+++|+...-.. .. ....|+......+.+++.++.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 456799999999999999999997422110 00 112234455667788899999999999998
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC---CHHHHHhhcCcccccC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL---SAEEVGVALDLSSISS 188 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~ 188 (224)
+.......++.+|++++|+|+.++..... ...+..+ .. .++|+++++||+|+.... ..+++.+.+.....
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~-- 160 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAV-- 160 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCce--
Confidence 88777888999999999999998644432 2333333 22 368999999999998643 22334444332211
Q ss_pred cccceeEEEeecCCC
Q psy12173 189 RQHRIKLIATQAPSN 203 (224)
Q Consensus 189 ~~~~~~~~~~Sa~~~ 203 (224)
...+++|+..+
T Consensus 161 ----~~~ipis~~~~ 171 (689)
T TIGR00484 161 ----PIQLPIGAEDN 171 (689)
T ss_pred ----eEEeccccCCC
Confidence 13566666655
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=118.44 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=103.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC--CCC-----------------------------CCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN--TSL-----------------------------SHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 98 (224)
..+++++++|+..+|||||+-+|+..- ++. +.+..-|++.....+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 467899999999999999999998532 111 1111223334444455567
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCC-----HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSK-----LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-- 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-----~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-- 171 (224)
..++++|+||+..|-..+.....++|+.|+|+|+.+.+. ...+.....-+.... .-..+|+++||+|+.+-
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wde 162 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccCH
Confidence 889999999999998877778899999999999998742 111222222222221 23568999999999862
Q ss_pred CCHHHHHhhcCcccccC---cccceeEEEeecCCCCccccc
Q psy12173 172 LSAEEVGVALDLSSISS---RQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 172 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
...+++...+.. ..+. ...+++|+++||..|.|+-+.
T Consensus 163 ~rf~ei~~~v~~-l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 163 ERFEEIVSEVSK-LLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHH-HHHHcCCCccCCeEEecccccCCccccc
Confidence 223444333322 1111 221358999999999999543
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-14 Score=110.02 Aligned_cols=116 Identities=21% Similarity=0.297 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHH-----HHHhhccCCCEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQK-GEYTLNIFELGGQENVRR-----FWNTYFEDTDLL 126 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~-----~~~~~~~~~d~i 126 (224)
||+++|+.+|||||+.+.+..+..+.. ....+|.......+.. ....+.+||.||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999998875442 2345788877777765 568999999999876544 345668999999
Q ss_pred EEEEECCCCCCHHHH---HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 127 VFVVDSADPSKLPVA---AMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 127 i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
|||+|+...+..+.+ ...+..+.+.. ++..+.+..+|+|+..+
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-H
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCH
Confidence 999999965533333 33333343333 67899999999999764
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=113.08 Aligned_cols=164 Identities=14% Similarity=0.209 Sum_probs=109.5
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCCeEEEEEEcCCchh-------HHHHHHhhc
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGEYTLNIFELGGQEN-------VRRFWNTYF 120 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~ 120 (224)
....++|+++|.+|+||||++|+|..+...+......+.+.... ....++..+.+||+||.++ +++....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 45678999999999999999999997664443333333333222 2344668899999999654 666677788
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---------HHHHhhcC-----cccc
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---------EEVGVALD-----LSSI 186 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---------~~~~~~~~-----~~~~ 186 (224)
...|.+++++++.++.- ..-...+.++.... .+.++++++|.+|....... ..+++.++ ...+
T Consensus 116 ~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRAL-GTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCccc-cCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998732 22344455555543 35899999999998665211 11111111 1111
Q ss_pred cCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 187 SSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
-.... +++..|...+.|+ +.+...+..++
T Consensus 193 ~q~V~--pV~~~~~r~~wgl-~~l~~ali~~l 221 (296)
T COG3596 193 FQEVK--PVVAVSGRLPWGL-KELVRALITAL 221 (296)
T ss_pred HhhcC--CeEEeccccCccH-HHHHHHHHHhC
Confidence 12344 7888889999999 77776766654
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=124.82 Aligned_cols=117 Identities=21% Similarity=0.104 Sum_probs=87.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC--C----------------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS--L----------------SHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~--~----------------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+.++|+++|++++|||||+++|+...-. . +.....|+......+.+++.++.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 35679999999999999999999752100 0 01222345556667788999999999999998
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+.......++.+|++++|+|+.++-... ....+..+ .. .++|+++++||+|+...
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~-~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQA-DK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 8887888899999999999998874322 22333333 22 47899999999999864
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-13 Score=104.39 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=77.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCCCCCceeEEEEEeCCeEEEEEEcCCchhH-------HH----HHHhh
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSH--NLKPTEGFNITILQKGEYTLNIFELGGQENV-------RR----FWNTY 119 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~----~~~~~ 119 (224)
++|+++|.+|+|||||+|.+++.+..... ....|.........+.+..+.++||||..+. .. .....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 47999999999999999999987643321 1233555566667778899999999994322 11 11223
Q ss_pred ccCCCEEEEEEECCCCCC-HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 120 FEDTDLLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..++|++++|+++.+... .....+++...+... .-.+++++.|++|.....
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCC
Confidence 467899999999887211 112233333332211 125889999999986653
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=118.54 Aligned_cols=86 Identities=20% Similarity=0.427 Sum_probs=76.1
Q ss_pred CCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCC----------CCHHHHHHHHHHHHhcCCC
Q psy12173 85 PTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADP----------SKLPVAAMELKNLLGDQRL 154 (224)
Q Consensus 85 ~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 154 (224)
||+|+....+.+++..+.+||++|+...+..|..++.+++++|||+|+++- .++.+....+..+.....+
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 455677778888899999999999999999999999999999999999973 4688888899999988777
Q ss_pred CCCcEEEEEeCCCCCC
Q psy12173 155 STVPILVIANKQDVPG 170 (224)
Q Consensus 155 ~~~piilv~nK~Dl~~ 170 (224)
.++|+++++||.|+..
T Consensus 250 ~~~piil~~NK~D~~~ 265 (342)
T smart00275 250 ANTSIILFLNKIDLFE 265 (342)
T ss_pred cCCcEEEEEecHHhHH
Confidence 8999999999999754
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=120.81 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=87.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC-CC-CC-----C---------------CCCCCCceeEEEEEeCCeEEEEEEcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN-TS-LS-----H---------------NLKPTEGFNITILQKGEYTLNIFELG 107 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~-~~-~~-----~---------------~~~~t~~~~~~~~~~~~~~~~l~D~~ 107 (224)
.+.++|+++|++++|||||+++|+... .. .. . ....++......+.+++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456799999999999999999986321 11 00 0 00111223345567788999999999
Q ss_pred CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC---CHHHHHhhcCc
Q psy12173 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL---SAEEVGVALDL 183 (224)
Q Consensus 108 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~ 183 (224)
|+..+.......+..+|++|+|+|+++. +......+...... .++|+++++||+|+.... -.+++++.++.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 9998887667778999999999999885 33222233333333 478999999999986531 13444555543
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=115.62 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=110.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchh-----HHH----HHHhh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQEN-----VRR----FWNTY 119 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~-----~~~----~~~~~ 119 (224)
+..++|+++|.||+|||||+|.|........+... .|-+.-...++++++++.+.||+|..+ ... ....-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 35689999999999999999999988754332223 344455667788999999999999654 010 12334
Q ss_pred ccCCCEEEEEEEC--CCCCCHHHHHHHHHHHHhc-----CCCCCCcEEEEEeCCCCCCCCCHHHH--HhhcCcccccCcc
Q psy12173 120 FEDTDLLVFVVDS--ADPSKLPVAAMELKNLLGD-----QRLSTVPILVIANKQDVPGALSAEEV--GVALDLSSISSRQ 190 (224)
Q Consensus 120 ~~~~d~ii~v~d~--~~~~s~~~~~~~~~~~~~~-----~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~ 190 (224)
++.+|++++|+|+ +..++-..+.+.+...-.. ....+.|++++.||.|+..+.+.-.. .-.... ......
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 7889999999999 4444444444444443222 12345899999999999876221111 001110 011122
Q ss_pred cceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 191 HRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
. ...++|+++++|+ +.+.+.+...+..+
T Consensus 425 ~--i~~~vs~~tkeg~-~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 425 P--IVVEVSCTTKEGC-ERLSTALLNIVERL 452 (531)
T ss_pred c--eEEEeeechhhhH-HHHHHHHHHHHHHh
Confidence 2 5666999999999 77877877776644
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=116.67 Aligned_cols=87 Identities=22% Similarity=0.418 Sum_probs=76.5
Q ss_pred CCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCC----------CCHHHHHHHHHHHHhcCC
Q psy12173 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADP----------SKLPVAAMELKNLLGDQR 153 (224)
Q Consensus 84 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~ 153 (224)
.+|+|+....+.+++..+.+||++|+...+..|..++.++++++||+|.++. +++.+....+..+.....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 3455777778888899999999999999999999999999999999999974 568888888999998877
Q ss_pred CCCCcEEEEEeCCCCCC
Q psy12173 154 LSTVPILVIANKQDVPG 170 (224)
Q Consensus 154 ~~~~piilv~nK~Dl~~ 170 (224)
..++|+++++||.|+..
T Consensus 226 ~~~~pill~~NK~D~f~ 242 (317)
T cd00066 226 FANTSIILFLNKKDLFE 242 (317)
T ss_pred ccCCCEEEEccChHHHH
Confidence 78999999999999644
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=124.81 Aligned_cols=117 Identities=20% Similarity=0.089 Sum_probs=85.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC--CC----C------------CCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT--SL----S------------HNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~--~~----~------------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+.++|+++|.+++|||||+++|+...- .. . .....|.......+.+++..+.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 4577999999999999999999974211 00 0 0122344445566778899999999999998
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+.......+..+|++++|+|+..+-... ....+..+.. .++|.++++||+|+...
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~q-t~~~~~~~~~----~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQ-SETVWRQADK----YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchh-hHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 8776777789999999999988763322 2333343333 37899999999999864
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-13 Score=112.43 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=57.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEE------------------------eCCeEEEEEEcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ------------------------KGEYTLNIFELGG 108 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~~~l~D~~G 108 (224)
++|+++|.|++|||||+++|++..+...+....|...+..... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999998876543333444444443322 1226789999999
Q ss_pred ch----hHHH---HHHhhccCCCEEEEEEECC
Q psy12173 109 QE----NVRR---FWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 109 ~~----~~~~---~~~~~~~~~d~ii~v~d~~ 133 (224)
.. ..+. .....++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 43 2222 2333489999999999997
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=102.87 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=89.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
......|+++|.+|+|||||++.+....-.. ......+. .......+..+.++||||.. .... ...+.+|++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~--~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVll 109 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ--NISDIKGP-ITVVTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLL 109 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC--cccccccc-EEEEecCCceEEEEeCCchH--HHHH-HHHHhcCEEEE
Confidence 4456789999999999999999998753111 11111221 11223367889999999864 2332 34688999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcE-EEEEeCCCCCCCC-CHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPI-LVIANKQDVPGAL-SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|.+.+.... ...+...... .+.|. ++++||+|+.++. ..++..+.+..........+.+++.+||++.-.+
T Consensus 110 viDa~~~~~~~--~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 110 LIDASFGFEME--TFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEecCcCCCHH--HHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 99998764332 2233333333 35674 5599999997432 1233332322111111112349999999988666
Q ss_pred cc
Q psy12173 207 LH 208 (224)
Q Consensus 207 ~~ 208 (224)
..
T Consensus 185 ~~ 186 (225)
T cd01882 185 PK 186 (225)
T ss_pred CH
Confidence 43
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-13 Score=116.54 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=70.5
Q ss_pred eEEEEEEcCCchh-----HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-
Q psy12173 99 YTLNIFELGGQEN-----VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL- 172 (224)
Q Consensus 99 ~~~~l~D~~G~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~- 172 (224)
.++.++||||... ........+..+|+|+||+|....-+..+ ..+...+.... ...|+++|+||+|+.+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 5788999999643 23344457899999999999987533332 33333333321 135999999999986432
Q ss_pred -CHHHHHhhcCcc--cccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 173 -SAEEVGVALDLS--SISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 173 -~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
..+++.+.+... ...... ..++++||+.|.|+ +.+..++.+
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f--~eIfPVSAlkG~ni-d~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITP--QQIFPVSSMWGYLA-NRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCC--ceEEEEeCCCCCCH-HHHHHHHHh
Confidence 234444443211 111112 27999999999999 666555544
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.3e-14 Score=116.46 Aligned_cols=154 Identities=18% Similarity=0.169 Sum_probs=111.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC---------------CCCCCCCCceeEEEEEe-----CCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL---------------SHNLKPTEGFNITILQK-----GEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~---------------~~~~~~t~~~~~~~~~~-----~~~~~~l~D~~G~ 109 (224)
.+..+..++-+-..|||||..|++...-.. +.+...|+-.+...+.+ +.+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 456788999999999999999999643111 11223333333334443 3489999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCcccc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---LSAEEVGVALDLSSI 186 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~ 186 (224)
..|.--....+..|.+.++|+|++.+=..+.+.+.+..+- .+..++-|.||.||+.. ...+++++.+++...
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence 9988666666889999999999999866666677776663 36889999999999875 334566666666543
Q ss_pred cCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 187 SSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
..+.+|||+|.|+ ++..+++.+
T Consensus 162 -------dav~~SAKtG~gI-~~iLe~Iv~ 183 (603)
T COG0481 162 -------DAVLVSAKTGIGI-EDVLEAIVE 183 (603)
T ss_pred -------hheeEecccCCCH-HHHHHHHHh
Confidence 7899999999999 445555543
|
|
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=113.71 Aligned_cols=89 Identities=20% Similarity=0.409 Sum_probs=79.8
Q ss_pred CCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCC----------CCHHHHHHHHHHHHhcC
Q psy12173 83 LKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADP----------SKLPVAAMELKNLLGDQ 152 (224)
Q Consensus 83 ~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~ 152 (224)
..+|+|.....+.+++.++.++|++||...+.-|.+++.+++++|||+++++- +++.+....+..+....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 35577888999999999999999999999999999999999999999999862 45777888999999999
Q ss_pred CCCCCcEEEEEeCCCCCCC
Q psy12173 153 RLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 153 ~~~~~piilv~nK~Dl~~~ 171 (224)
++.+.++|+++||.|+.++
T Consensus 259 ~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEE 277 (354)
T ss_pred ccccCcEEEEeecHHHHHH
Confidence 9999999999999998653
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=110.38 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=106.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC---------------------------------CCCCCCCCceeEEEEEe
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL---------------------------------SHNLKPTEGFNITILQK 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~ 96 (224)
...++++.+|...-|||||+-||+...... +.+...|++.-+..|.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 356899999999999999999999744211 12333455555666666
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCH
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSA 174 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 174 (224)
+.++|.+.|||||+.|-+.+......||+.|+++|+..+ +.+..+....+.... .=..+++++||+||.+- ...
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence 889999999999999999888888899999999999765 444433333333331 12568999999999764 223
Q ss_pred HHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 175 EEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+++...+.............++|+||+.|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 333333321111111222389999999999984
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.1e-13 Score=119.59 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=80.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCCC------------------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhh
Q psy12173 58 LGLDNSGKSTLIKQISSGNTSL------------------SHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTY 119 (224)
Q Consensus 58 ~G~~~sGKSsl~~~l~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 119 (224)
+|++++|||||+++|....-.. +.....|++.....+.+++..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 5999999999999996432110 0012334555667788899999999999999887777778
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+..+|++++|+|++....... ...+..+.. .++|+++++||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~-~~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQT-ETVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 899999999999998765443 233333332 37899999999998754
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=106.12 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=72.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------CCCCCceeEE--EEEeCC--eEEEEEEcCCchhH-------
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHN--------LKPTEGFNIT--ILQKGE--YTLNIFELGGQENV------- 112 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~--------~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~------- 112 (224)
.++|+++|++|+|||||+|++.+..+..... ..+|+..... .+..++ ..+.+|||||....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 5799999999999999999999988654321 2344443333 233344 57999999993211
Q ss_pred -----------HHH--------HHhhcc--CCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 113 -----------RRF--------WNTYFE--DTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 113 -----------~~~--------~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
... +...+. .+|+++++++.+.. .+... .+.+..+. .++|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 110 101222 46888888887752 23333 33333332 2589999999999965
Q ss_pred C
Q psy12173 171 A 171 (224)
Q Consensus 171 ~ 171 (224)
.
T Consensus 158 ~ 158 (276)
T cd01850 158 P 158 (276)
T ss_pred H
Confidence 3
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-13 Score=112.31 Aligned_cols=165 Identities=13% Similarity=0.151 Sum_probs=111.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh----HHHH----H-Hhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN----VRRF----W-NTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~----~-~~~~ 120 (224)
++..+++++|-|++|||||++.++..........++|.+...+++.++-..+.++||||.-+ .+.. . ....
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 46789999999999999999999987765544666777777888888778899999999321 1111 1 1112
Q ss_pred cCCCEEEEEEECCC--CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 121 EDTDLLVFVVDSAD--PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 121 ~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+---+|+|+.|++. +.|.......+..+... +.++|+|+|+||+|.....+.++-.+.+--... ...+++++++
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~--~~~~v~v~~t 321 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTII--DDGNVKVVQT 321 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHH--hccCceEEEe
Confidence 22346899999987 55778888888887554 368999999999999765433222211100000 1112489999
Q ss_pred ecCCCCccccchHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l 218 (224)
|+.+.+||-+.-..+.+..|
T Consensus 322 S~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred cccchhceeeHHHHHHHHHH
Confidence 99999999554444444433
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=119.25 Aligned_cols=116 Identities=20% Similarity=0.165 Sum_probs=80.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC---------------CCC-CCCCCCCCceeEE----EEEeCCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN---------------TSL-SHNLKPTEGFNIT----ILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~---------------~~~-~~~~~~t~~~~~~----~~~~~~~~~~l~D~~G~ 109 (224)
...++|+++|+.++|||||+++|+... +.. +.....|+..... .+.+++..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 356899999999999999999997531 110 0012223332221 24557789999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
.++.......++.+|++++|+|+.++-... ....+..... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~-t~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ-TETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCcc-HHHHHHHHHH----cCCCEEEEEEChhccc
Confidence 998877778899999999999998753222 2233333322 3678899999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6e-12 Score=116.61 Aligned_cols=103 Identities=20% Similarity=0.192 Sum_probs=68.5
Q ss_pred CCHHHHHHHHhcCCCCCCCC--CCCCCceeEEEEEe----------------CCeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 63 SGKSTLIKQISSGNTSLSHN--LKPTEGFNITILQK----------------GEYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 63 sGKSsl~~~l~~~~~~~~~~--~~~t~~~~~~~~~~----------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
++||||+.++.+........ .+..+|....+... +...+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999999877544222 22233333222221 0123899999999999888877888999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
++++|+|++++-.-. ....+. .... .++|+++++||+|+..
T Consensus 552 ivlLVVDa~~Gi~~q-T~e~I~-~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 552 LAVLVVDINEGFKPQ-TIEAIN-ILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEEECcccCCHh-HHHHHH-HHHH---cCCCEEEEEECCCCcc
Confidence 999999998752211 122222 2333 3689999999999964
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=104.93 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=110.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC---C--------------------CCCCCCCCceeE-EEEEeC------Ce
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS---L--------------------SHNLKPTEGFNI-TILQKG------EY 99 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~---~--------------------~~~~~~t~~~~~-~~~~~~------~~ 99 (224)
+..++|.++|+...|||||.++|.+-... + .+.+.+ ..+.. ..+... -+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~-~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP-ECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC-cccccCCCCCCCCCCccEEE
Confidence 46789999999999999999999973311 1 001100 00000 011111 16
Q ss_pred EEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHH
Q psy12173 100 TLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAE 175 (224)
Q Consensus 100 ~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~ 175 (224)
.+.++|.|||+-....+.....--|+.++|+.++.+....+..+.+..+--- .-+.+|++-||.|+... ...+
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence 7999999999999887766566679999999999988877777766655222 24679999999999875 3344
Q ss_pred HHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 176 EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++++.++-.. .-+++++++||..+.|+ +.+++++.+.+-
T Consensus 164 qIk~FvkGt~----Ae~aPIIPiSA~~~~NI-Dal~e~i~~~Ip 202 (415)
T COG5257 164 QIKEFVKGTV----AENAPIIPISAQHKANI-DALIEAIEKYIP 202 (415)
T ss_pred HHHHHhcccc----cCCCceeeehhhhccCH-HHHHHHHHHhCC
Confidence 4555544221 12349999999999999 888888777653
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-12 Score=110.27 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=83.4
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CCCCCceeEEEEE----------------eCCeEEEEEEcCC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHN--LKPTEGFNITILQ----------------KGEYTLNIFELGG 108 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~--~~~t~~~~~~~~~----------------~~~~~~~l~D~~G 108 (224)
.+.-+.+-++++|+..+|||-|+..+.+.+...... ....+|.++.+.. ++---+.++||||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 445578899999999999999999999876544221 2223333333222 1123588999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
++.|..++.....-||.+|+|+|+.++ ++.. .+-+.-+ .. ++.|+||++||+|..
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhG--lepqtiESi~lL-R~---rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHG--LEPQTIESINLL-RM---RKTPFIVALNKIDRL 605 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhcc--CCcchhHHHHHH-Hh---cCCCeEEeehhhhhh
Confidence 999999999999999999999999986 2222 1222222 22 589999999999974
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-13 Score=107.88 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=73.0
Q ss_pred eEEEEEEcCCchhHHH---HH---HhhccC--CCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 99 YTLNIFELGGQENVRR---FW---NTYFED--TDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~---~~---~~~~~~--~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
..+.+||+||+.+... .. ...+.. ++++++|+|+....+.... ..++........ .++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 4689999999876432 22 122333 8999999999876544332 222222211111 479999999999998
Q ss_pred CCCCHHHHHhhcCc--------c---------------cccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 170 GALSAEEVGVALDL--------S---------------SISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 170 ~~~~~~~~~~~~~~--------~---------------~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.....++..+.++. . .........+++++||+++.|+ +++.+.+.+.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl-~~L~~~I~~~l 246 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGF-DELYAAIQEVF 246 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCH-HHHHHHHHHHc
Confidence 76544444443331 0 0001122237999999999999 77777777654
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-12 Score=115.57 Aligned_cols=116 Identities=20% Similarity=0.187 Sum_probs=82.4
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------CCCCCCCceeEEEEEe----------------
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLS----------------HNLKPTEGFNITILQK---------------- 96 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~---------------- 96 (224)
..+.++|+++|+.++|||||+.+|+...-... .....|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 34678999999999999999999986442100 0001111212222333
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
++..+.++||||+.+|.......++.+|++|+|+|+..+-... ....|..... .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHHH----CCCCEEEEEECCccc
Confidence 2577899999999999988888899999999999999873322 2344444443 478999999999997
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=96.17 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=77.3
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhHH------H----HH
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENVR------R----FW 116 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~~------~----~~ 116 (224)
......+|+++|.+|+|||||+|++++......+... .|..........++..+.++||||..+.. . ..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 3356789999999999999999999997754432332 34444455556678899999999965431 0 11
Q ss_pred Hhhc--cCCCEEEEEEECCCCC-CHH--HHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 117 NTYF--EDTDLLVFVVDSADPS-KLP--VAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 117 ~~~~--~~~d~ii~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
..++ ...|++++|..++... ... .+.+.+...+.... -.++++|.||+|...
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~ 163 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCC
Confidence 2223 2678888887666532 121 23333333333211 257999999999854
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.8e-11 Score=96.46 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=73.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCCeEEEEEEcCCchhHHH-------HHHhhc-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGEYTLNIFELGGQENVRR-------FWNTYF- 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~- 120 (224)
.+.++|+++|.+|+||||++|++++......+...+ +..........++..+.++||||..+... ....++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999876432212221 12222333445789999999999664321 111111
Q ss_pred -cCCCEEEEEEECCCCCCHHH----HHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 121 -EDTDLLVFVVDSADPSKLPV----AAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 121 -~~~d~ii~v~d~~~~~s~~~----~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
...|+++||.+++.. ++.. +.+.+...+... --.+.|++.|++|..
T Consensus 116 ~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFS 166 (313)
T ss_pred cCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccC
Confidence 368999999665532 2322 233334433321 125789999999975
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.6e-12 Score=114.92 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=80.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------CCCCCCCceeEEEEEeC----------CeEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS----------------HNLKPTEGFNITILQKG----------EYTLNI 103 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~----------~~~~~l 103 (224)
...++|+++|+.++|||||+++|+...-... .....|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4567999999999999999999986321110 00011111112233333 577999
Q ss_pred EEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 104 FELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 104 ~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
+||||+.++.......++.+|++|+|+|+.++-... ....+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999887788899999999999999863322 3344444443 368999999999997
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=102.05 Aligned_cols=84 Identities=20% Similarity=0.157 Sum_probs=63.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchh-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQEN- 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~- 111 (224)
...++|+++|.|++|||||+|+|++......+....|...+...+.+.+ .++.++||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 3567999999999999999999988775554455566677777766542 3589999999432
Q ss_pred ------HHHHHHhhccCCCEEEEEEECC
Q psy12173 112 ------VRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 112 ------~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2223344578899999999984
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.5e-12 Score=104.36 Aligned_cols=149 Identities=22% Similarity=0.281 Sum_probs=104.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCC----------CCCCCCCCce----eEEEEEeCCeEEEEEEcCCchhHHH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSL----------SHNLKPTEGF----NITILQKGEYTLNIFELGGQENVRR 114 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~----------~~~~~~t~~~----~~~~~~~~~~~~~l~D~~G~~~~~~ 114 (224)
...+|+++-+...|||||+..|+.+. |.. +++....-|. .-..+.+++..++++|||||-.|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 45799999999999999999999755 221 1111111122 2234667889999999999999988
Q ss_pred HHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccc---ccCccc
Q psy12173 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSS---ISSRQH 191 (224)
Q Consensus 115 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~ 191 (224)
-....+.=.|++++++|+.++ .+.+.+-.+...+.. +.+.|+|+||+|.++....+-+.+.+++.. ....+.
T Consensus 84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 777778889999999999987 444444444444443 677799999999988755544444443321 112333
Q ss_pred ceeEEEeecCCCC
Q psy12173 192 RIKLIATQAPSNL 204 (224)
Q Consensus 192 ~~~~~~~Sa~~~~ 204 (224)
+.+++..||+.|.
T Consensus 159 dFPivYAS~~~G~ 171 (603)
T COG1217 159 DFPIVYASARNGT 171 (603)
T ss_pred CCcEEEeeccCce
Confidence 4599999999886
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-12 Score=103.77 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=98.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCC--------------C------CCCCCCCceeEEEEEeCCeEEEEEEcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSL--------------S------HNLKPTEGFNITILQKGEYTLNIFELGG 108 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~--------------~------~~~~~t~~~~~~~~~~~~~~~~l~D~~G 108 (224)
+..+.+++-+|.+|||||...|+--. ... + .....++..+..++.+++..+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 34589999999999999999988421 100 0 0112223345666777899999999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCccc
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDLSS 185 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~ 185 (224)
|+.+...+...+..+|..+.|+|+..+ .+.....+.++.+. +++|++-++||.|...... .+|+++.+++..
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~ 165 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQC 165 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence 999999888889999999999999998 66666666666665 6999999999999876533 467777777643
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-12 Score=100.89 Aligned_cols=152 Identities=19% Similarity=0.177 Sum_probs=107.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCch---------hHHHHHHhh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQE---------NVRRFWNTY 119 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~---------~~~~~~~~~ 119 (224)
.....|.++|-+++|||||+++|+.....+.+..+.|++++...... .+..+.+.||.|-- .|++....
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee- 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE- 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH-
Confidence 45678999999999999999999977666666777888877777666 56788999999932 34444443
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc----EEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeE
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP----ILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
...+|.++.|.|+++|+. +.........++....++.| ++=|-||.|........| - . .-
T Consensus 255 VaeadlllHvvDiShP~a-e~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----~---------n--~~ 318 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNA-EEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----K---------N--LD 318 (410)
T ss_pred HhhcceEEEEeecCCccH-HHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----c---------C--Cc
Confidence 678999999999999965 33444444444443323333 566778888755422211 1 1 25
Q ss_pred EEeecCCCCccccchHHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+.+||++|+|+ +++..++...+.
T Consensus 319 v~isaltgdgl-~el~~a~~~kv~ 341 (410)
T KOG0410|consen 319 VGISALTGDGL-EELLKAEETKVA 341 (410)
T ss_pred cccccccCccH-HHHHHHHHHHhh
Confidence 68899999999 888878776654
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-11 Score=99.17 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchh----
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQEN---- 111 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~---- 111 (224)
++|+++|.|++|||||+|++++......+....|.+++...+.+.+ .++.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999999884444445566677766666543 2589999999432
Q ss_pred ---HHHHHHhhccCCCEEEEEEECC
Q psy12173 112 ---VRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 112 ---~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
........++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1223344578999999999985
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-12 Score=86.97 Aligned_cols=134 Identities=18% Similarity=0.205 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCC----chhHHHHHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG----QENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~ii~v 129 (224)
+++++|..|+|||||++.+.+..... ..|- .+++++ =-.+|||| +..+...+......+|++++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly----kKTQ-----Ave~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v 71 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY----KKTQ-----AVEFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYV 71 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh----cccc-----eeeccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeee
Confidence 78999999999999999999876222 1111 133322 12679998 333333334457899999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
-.++++++.-.- .+..+ ..+|+|=+++|.|+.++.+.+..+..+.... . -++|++|+.++.|+ ++
T Consensus 72 ~~and~~s~f~p--~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a--~~IF~~s~~d~~gv-~~ 136 (148)
T COG4917 72 HAANDPESRFPP--GFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAG----A--EPIFETSAVDNQGV-EE 136 (148)
T ss_pred ecccCccccCCc--ccccc------cccceEEEEecccccchHhHHHHHHHHHHcC----C--cceEEEeccCcccH-HH
Confidence 999998653211 11111 3566999999999998755555555442211 1 18999999999999 44
Q ss_pred hHHH
Q psy12173 210 SVVE 213 (224)
Q Consensus 210 ~~~~ 213 (224)
+.+.
T Consensus 137 l~~~ 140 (148)
T COG4917 137 LVDY 140 (148)
T ss_pred HHHH
Confidence 4433
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-12 Score=100.03 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=60.2
Q ss_pred EEEEEEcCCchhHHHHHHhh------c--cCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 100 TLNIFELGGQENVRRFWNTY------F--EDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 100 ~~~l~D~~G~~~~~~~~~~~------~--~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
.+.++|||||.++-..+... + ...-++++++|.....+.... ...+..+.... ..+.|.|.|.||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEeeeccCccc
Confidence 79999999999876644332 2 345578999998876553332 23233322110 03799999999999987
Q ss_pred CC---------CH---------------HHHHhhcCcccccCcccce-eEEEeecCCCCccccchHHHHHHHHH
Q psy12173 171 AL---------SA---------------EEVGVALDLSSISSRQHRI-KLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 171 ~~---------~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+. +. +++.+.++ ..... .++++|+.+++|+ +.+...+.+++.
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~------~~~~~~~f~pls~~~~~~~-~~L~~~id~a~~ 237 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLD------DFGLVIRFIPLSSKDGEGM-EELLAAIDKANQ 237 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCC------CCSSS---EE-BTTTTTTH-HHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh------hcCCCceEEEEECCChHHH-HHHHHHHHHHhc
Confidence 21 01 11111111 11122 7999999999999 888888888764
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-11 Score=91.79 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=73.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCCCCCceeEEEEEeCCeEEEEEEcCCch-------hHHH----HHHhh
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSH--NLKPTEGFNITILQKGEYTLNIFELGGQE-------NVRR----FWNTY 119 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~D~~G~~-------~~~~----~~~~~ 119 (224)
.+|+++|.+|+||||++|.+++....... ....|.........+++..+.++||||-. .... .....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 48999999999999999999988744321 12234456666678899999999999922 1111 12233
Q ss_pred ccCCCEEEEEEECCCCCC-HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH
Q psy12173 120 FEDTDLLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA 174 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 174 (224)
..+.|++++|+....... -....+++..++.... -..++|+.|..|.......
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~ 134 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSL 134 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTH
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccH
Confidence 567899999999983311 1223334444444321 2468999998887766543
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-12 Score=88.97 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=78.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
+|++++|+.|+|||+|+.++....|.. .+. +|.+ +........++++.++.|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~--~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~ 55 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDY--VPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWR 55 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccc--cCceehhh-----------------------hhhccccccCCCCEEEEEEE
Confidence 489999999999999999998777654 333 3333 33333456788999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
..+.++++.. |...+... ...+.|.++++||.|+.+.. ++.+... ..++++|+++|.|+
T Consensus 56 ~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~~----------~~~~~~s~~~~~~~ 114 (124)
T smart00010 56 VDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEEG----------LEFAETSAKTPEEG 114 (124)
T ss_pred ccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHHH----------HHHHHHhCCCcchh
Confidence 9999888654 54444433 22568899999999984321 1111111 15778999999988
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-11 Score=97.46 Aligned_cols=111 Identities=16% Similarity=0.094 Sum_probs=70.7
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA--- 174 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--- 174 (224)
+..+.++||+|...-... ....+|.+++|.+...++.+...... .+. ..-++|+||+|+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~E------~aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IME------LADLIVINKADGDNKTAARRA 215 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hhh------hhheEEeehhcccchhHHHHH
Confidence 478999999996633322 35579999999764444444332221 211 223899999999765322
Q ss_pred -HHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 175 -EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 175 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
.++...+.........|..+++.+||++|.|+ +++.+.+.+++..+
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GI-deL~~~I~~~~~~l 262 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGI-DEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCH-HHHHHHHHHHHHHh
Confidence 33444443322111234458999999999999 88888888876643
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-11 Score=104.32 Aligned_cols=168 Identities=18% Similarity=0.158 Sum_probs=109.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC-------------------------------CCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL-------------------------------SHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 98 (224)
...++++++|+.++|||||+.+++..--.. +....-|++.....++-..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 478999999999999999999998522111 1111122233334444466
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCC---HH--HHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC--C
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSK---LP--VAAMELKNLLGDQRLSTVPILVIANKQDVPG--A 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~ 171 (224)
..++++|.||+..|-.........+|+.++|+|++..+- |+ ........+++.. .-..+++++||+|+.+ .
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccCccH
Confidence 889999999999888877777889999999999986421 11 1222333333332 2456899999999965 2
Q ss_pred CCHHHHHhhcCccc---ccCcccceeEEEeecCCCCccccc-hHHHHHHHHH
Q psy12173 172 LSAEEVGVALDLSS---ISSRQHRIKLIATQAPSNLHHLHV-SVVEAEQAMY 219 (224)
Q Consensus 172 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~gv~~~-~~~~i~~~l~ 219 (224)
...+++...+.-.. +......+.|++||+.+|+|+-.. -..++.+|+.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~ 384 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYK 384 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhc
Confidence 33445444443211 112333448999999999999644 4446777765
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.5e-11 Score=109.04 Aligned_cols=116 Identities=21% Similarity=0.175 Sum_probs=80.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------------CCCCCCceeEEEEEe----CCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSH----------------NLKPTEGFNITILQK----GEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~----~~~~~~l~D~~G~ 109 (224)
.+.++|+++|+.++|||||+.+|+...-.... ....|+......+.+ ++..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45779999999999999999999853211100 001122222223333 4688999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
.++.......++.+|++|+|+|+..+-.. .....+...... +.|.++++||+|+..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~~----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALRE----RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHHc----CCCeEEEEECchhhc
Confidence 99988778889999999999999876332 233344443332 567899999999863
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.7e-11 Score=99.08 Aligned_cols=157 Identities=15% Similarity=0.075 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNT---SLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
.|+..|+-..|||||++.+++..- ++......|++..++.....+..+.++|+||++++-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 578899999999999999998652 22234445666777777777789999999999999887777788999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
+.+++-.. +..+.+. ++... .-...++|+||+|..++...++..+.+..... ... .+++.+|+++|.|+ +++
T Consensus 82 ~~deGl~~-qtgEhL~-iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~--~~i~~~s~~~g~GI-~~L 153 (447)
T COG3276 82 AADEGLMA-QTGEHLL-ILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LAN--AKIFKTSAKTGRGI-EEL 153 (447)
T ss_pred eCccCcch-hhHHHHH-HHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-ccc--ccccccccccCCCH-HHH
Confidence 99765221 1222222 22221 23457999999999876443333222221111 122 38899999999999 777
Q ss_pred HHHHHHHH
Q psy12173 211 VVEAEQAM 218 (224)
Q Consensus 211 ~~~i~~~l 218 (224)
.+.+.+..
T Consensus 154 k~~l~~L~ 161 (447)
T COG3276 154 KNELIDLL 161 (447)
T ss_pred HHHHHHhh
Confidence 77776665
|
|
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-11 Score=94.75 Aligned_cols=117 Identities=16% Similarity=0.215 Sum_probs=71.1
Q ss_pred eEEEEEEcCCchhHH------HHHHhhc--cCCCEEEEEEECCC---CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 99 YTLNIFELGGQENVR------RFWNTYF--EDTDLLVFVVDSAD---PSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~------~~~~~~~--~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
.+..++|||||.+.- .+....+ ...-++++|+|... +.+|-.-+-+.-.++.. .+.|+|++.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence 568999999976421 1222222 23456778888654 33444444444455554 5899999999999
Q ss_pred CCCCCCHHHH-------HhhcCc-c--ccc-----------CcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 168 VPGALSAEEV-------GVALDL-S--SIS-----------SRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 168 l~~~~~~~~~-------~~~~~~-~--~~~-----------~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+.+.....++ ++.++- . ... .-......+-+|+.+|.|. +.|..++.+.+.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~-ddf~~av~~~vd 264 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF-DDFFTAVDESVD 264 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH-HHHHHHHHHHHH
Confidence 9886433332 222221 0 000 0111337899999999999 777777777655
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=93.45 Aligned_cols=163 Identities=18% Similarity=0.179 Sum_probs=98.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC----C---CCCCCCCCCCceeEEEEEe---------CCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN----T---SLSHNLKPTEGFNITILQK---------GEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~----~---~~~~~~~~t~~~~~~~~~~---------~~~~~~l~D~~G~~~~~ 113 (224)
+.++++.++|+..||||+|.+++..-. | +.+.+...|++..+..+.. +..++.++|.||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 356899999999999999999998633 1 2222333444433333332 23678999999999888
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHH-HHHHHhcCCCCCCcEEEEEeCCCCC-CCCCHHHHH---hhcCcccccC
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAME-LKNLLGDQRLSTVPILVIANKQDVP-GALSAEEVG---VALDLSSISS 188 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~---~~~~~~~~~~ 188 (224)
+......+-.|..++|+|+..+-.-...+-. +.++ .-...|+|+||.|.. +......+. ..+.......
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 7766667778999999999986333222221 2222 224467778877764 433332222 2221111111
Q ss_pred -cccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 189 -RQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 189 -~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
-..+.|++++||+.|+-- ++.+.++.+++.
T Consensus 159 ~f~g~~PI~~vsa~~G~~~-~~~i~eL~e~l~ 189 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFK-EEMIQELKEALE 189 (522)
T ss_pred CcCCCCceeEEecCCCccc-hhHHHHHHHHHH
Confidence 122359999999999533 444444444443
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=89.57 Aligned_cols=161 Identities=18% Similarity=0.092 Sum_probs=100.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC---C-------------CCCCCCCCCCCceeEEEEEe--CCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG---N-------------TSLSHNLKPTEGFNITILQK--GEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~---~-------------~~~~~~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~ 111 (224)
..+++|..+|+.+.|||||..+++.. . -+++.....| .+..++.+ .++++..+|+||+..
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGIT--Intahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGIT--INTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCce--eccceeEEecCCceEEeccCCChHH
Confidence 36789999999999999998888741 1 1111111222 34444444 678999999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCCCCCCH-----HHHHhhcCccc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTV-PILVIANKQDVPGALSA-----EEVGVALDLSS 185 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~~-----~~~~~~~~~~~ 185 (224)
|-........+.|+.|+|+.+++. .+.+.++.+.-..+. +. .+++++||+|+.++.+. .|+.+.+....
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqv----Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~ 162 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQV----GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG 162 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhc----CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence 988776667889999999999987 334344433333222 55 47888899999875322 22233332222
Q ss_pred ccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+ ...++|++.-||..-..-++.....+.+.+.
T Consensus 163 f--~gd~~Pii~gSal~ale~~~~~~~~i~eLm~ 194 (394)
T COG0050 163 F--PGDDTPIIRGSALKALEGDAKWEAKIEELMD 194 (394)
T ss_pred C--CCCCcceeechhhhhhcCCcchHHHHHHHHH
Confidence 2 2233488888887543322334444444443
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-11 Score=96.12 Aligned_cols=156 Identities=21% Similarity=0.213 Sum_probs=98.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCCCC---------------------CceeEEEEEe--------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSL-----SHNLKPT---------------------EGFNITILQK-------- 96 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-----~~~~~~t---------------------~~~~~~~~~~-------- 96 (224)
+...|.+.|+||+|||||+++|....-.. .-...|+ -+.....+.-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 46799999999999999999987422000 0000011 0122222221
Q ss_pred ------------CCeEEEEEEcCC--chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEE
Q psy12173 97 ------------GEYTLNIFELGG--QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVI 162 (224)
Q Consensus 97 ------------~~~~~~l~D~~G--~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 162 (224)
-+.++.++.|.| |.+.. ...-+|.+++|....-++..+....-+.++.. ++|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~v 173 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFV 173 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEE
Confidence 146788888886 33333 24569999999999988888777766666622 899
Q ss_pred EeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 163 ANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 163 ~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
+||.|+... ....++...+.+.......|..+++.|||.+|.|+ +++.+.+.++...+
T Consensus 174 VNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi-~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 174 VNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGI-DELWEAIDEHRDYL 232 (266)
T ss_dssp EE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSH-HHHHHHHHHHHHHH
T ss_pred EeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCH-HHHHHHHHHHHHHH
Confidence 999996554 33455666665554445667779999999999999 88888888876654
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.5e-11 Score=101.16 Aligned_cols=84 Identities=24% Similarity=0.460 Sum_probs=72.3
Q ss_pred CCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC----------CCCHHHHHHHHHHHHhcCCC
Q psy12173 86 TEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD----------PSKLPVAAMELKNLLGDQRL 154 (224)
Q Consensus 86 t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 154 (224)
|+|.....+.+ .+..+.++|++|+...+..|..++.++++||||+++++ ..++.+....+..+.....+
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 44677778888 88999999999999999999999999999999999874 23477888899999998888
Q ss_pred CCCcEEEEEeCCCCC
Q psy12173 155 STVPILVIANKQDVP 169 (224)
Q Consensus 155 ~~~piilv~nK~Dl~ 169 (224)
.+.|++|+.||.|+.
T Consensus 302 ~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 302 KNTPIILFLNKIDLF 316 (389)
T ss_dssp TTSEEEEEEE-HHHH
T ss_pred ccCceEEeeecHHHH
Confidence 899999999999963
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.3e-10 Score=91.07 Aligned_cols=109 Identities=18% Similarity=0.081 Sum_probs=65.1
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHH
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEV 177 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 177 (224)
+.++.++||+|...... .....+|.++++.+.. +-.++......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e~---~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEV---DIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhhh---HHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 57899999998542221 2356788888885433 333333333333 35777999999999765332221
Q ss_pred Hhhc--Ccccc--cCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 178 GVAL--DLSSI--SSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 178 ~~~~--~~~~~--~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
...+ .+... ....|..+++++||++|.|+ +++...+.+.+.
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi-~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGI-DELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCH-HHHHHHHHHHHH
Confidence 2111 11111 11234347999999999999 667667666543
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-10 Score=100.84 Aligned_cols=130 Identities=24% Similarity=0.169 Sum_probs=94.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-----C-------------CCCCCCceeEEEEEeCC-eEEEEEEcCCc
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLS-----H-------------NLKPTEGFNITILQKGE-YTLNIFELGGQ 109 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-----~-------------~~~~t~~~~~~~~~~~~-~~~~l~D~~G~ 109 (224)
..+.++|.++|+.++|||||..+++...-..+ . ....|+......+.|++ ..++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 34678999999999999999999995331110 0 11112223344667785 99999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---LSAEEVGVALDL 183 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~ 183 (224)
.+|..-....++-+|++++|+|+..+-.. +.+..|.+...+ ++|.++++||+|.... ...+++.+.+..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~~----~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADKY----GVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhhc----CCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 99999888889999999999999987332 234455555443 8999999999999765 344555555543
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=89.17 Aligned_cols=83 Identities=20% Similarity=0.272 Sum_probs=64.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC------------------CeEEEEEEcCCchh--
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG------------------EYTLNIFELGGQEN-- 111 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~l~D~~G~~~-- 111 (224)
.+++.++|-|++|||||+|.++.......+..+.|++++.....+. ...++++|.+|...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4689999999999999999999988555667778888777655542 15689999999443
Q ss_pred -----HHHHHHhhccCCCEEEEEEECCC
Q psy12173 112 -----VRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 112 -----~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
....+...++.+|+++.|++..+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 33344455899999999999885
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-10 Score=90.13 Aligned_cols=160 Identities=23% Similarity=0.200 Sum_probs=105.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CCCCC---Cc------------------eeEEEEEe-------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSH-----NLKPT---EG------------------FNITILQK------- 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-----~~~~t---~~------------------~~~~~~~~------- 96 (224)
-+...|.+.|.||+|||||+..|......... ...|+ ++ ....++.-
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 35669999999999999999998753311100 00111 00 11111111
Q ss_pred -------------CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEE
Q psy12173 97 -------------GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIA 163 (224)
Q Consensus 97 -------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 163 (224)
.+..+.++.|.|.-.-... ..+-+|.+++|.-..-++..+....-+.++.. ++|+
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vI 196 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVI 196 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeE
Confidence 1366778888763322221 23468999999888888778777766666632 8999
Q ss_pred eCCCCCCC-CCHHHHHhhcCccc--ccCcccceeEEEeecCCCCccccchHHHHHHHHHHhh
Q psy12173 164 NKQDVPGA-LSAEEVGVALDLSS--ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 164 nK~Dl~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~~ 222 (224)
||.|+... ....++...++... .....|..+++.|||.+|+|+ +++.+.+.++...+.
T Consensus 197 NKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi-~~L~~ai~~h~~~~~ 257 (323)
T COG1703 197 NKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGI-DELWDAIEDHRKFLT 257 (323)
T ss_pred eccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCH-HHHHHHHHHHHHHHH
Confidence 99997654 33455555555554 455777779999999999999 888889998887553
|
|
| >KOG0447|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-09 Score=91.02 Aligned_cols=161 Identities=9% Similarity=0.148 Sum_probs=114.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-CCCC-----------------------------------------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-SLSH----------------------------------------------- 81 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-~~~~----------------------------------------------- 81 (224)
+..++|+++|+..+||||.+..+..... +..+
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 4578999999999999999998886442 2100
Q ss_pred ------CCCCCCceeEEEEEeCC---eEEEEEEcCCch-------------hHHHHHHhhccCCCEEEEEEECCCCCCHH
Q psy12173 82 ------NLKPTEGFNITILQKGE---YTLNIFELGGQE-------------NVRRFWNTYFEDTDLLVFVVDSADPSKLP 139 (224)
Q Consensus 82 ------~~~~t~~~~~~~~~~~~---~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 139 (224)
.-..|+......+++++ ..+.++|+||.. ..-++...+..+.++||+|+-- .|.+
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVD 462 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVD 462 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcc
Confidence 00011122223344433 579999999932 3445667789999999999842 2444
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 140 VAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
.-+...-.+....++.+...|+|.+|.|+.++ .+++.+.+.++...+..+.. .|+.+ .+|.|-..+.+++|++-
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKAL--GYfaV--VTGrGnssdSIdaIR~Y 538 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKAL--GYFAV--VTGKGNSSESIEAIREY 538 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhc--ceeEE--EecCCCcchhHHHHHHH
Confidence 44555666777777788999999999999876 78999999998887777665 67766 47777778888887764
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.4e-10 Score=83.48 Aligned_cols=64 Identities=20% Similarity=0.355 Sum_probs=43.2
Q ss_pred eEEEEEEcCCchh----HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCC
Q psy12173 99 YTLNIFELGGQEN----VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166 (224)
Q Consensus 99 ~~~~l~D~~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 166 (224)
..+.++||||... .......+++.+|++|+|.+++..-+-..... +...... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC---CCCeEEEEEcCC
Confidence 4589999999643 22456777899999999999999644443333 3333333 244589999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-10 Score=88.48 Aligned_cols=147 Identities=22% Similarity=0.268 Sum_probs=97.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHH-----HHHhhccCCCE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRR-----FWNTYFEDTDL 125 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~-----~~~~~~~~~d~ 125 (224)
.||+++|-+|+||||+=.-+..+.... ......|+++...+..+ ++..+.+||.+|++.+.. .....++..++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~v 84 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQV 84 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehee
Confidence 589999999999999765555443211 11345566766666655 458899999999996543 33556889999
Q ss_pred EEEEEECCCCCC---HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHh-hcCcccccCcccceeEEEeecC
Q psy12173 126 LVFVVDSADPSK---LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGV-ALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 126 ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+++|||+...+- +......+..++++. +...+++...|.|+.+.-..+++-+ ..+......+.+.|.++++|..
T Consensus 85 li~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 85 LIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 999999997643 444455666676654 5678999999999987633333222 2222222223444577887754
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-10 Score=94.70 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=59.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CCCCCCceeEEEEEeCC-eEEEEEEcCCchhHHHHH-----Hhh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH-----NLKPTEGFNITILQKGE-YTLNIFELGGQENVRRFW-----NTY 119 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-----~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~-----~~~ 119 (224)
..++|+|+|++|+|||||+|.|.+-...... ....|..... +.... .++.+||+||........ ...
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~--Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTP--YPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EE--EE-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCee--CCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4679999999999999999999874322211 1112222222 22222 359999999954322111 223
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
+...|.+|++.+ ++|....-++..-.+. .++|+.+|-+|+|.
T Consensus 112 ~~~yD~fiii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred ccccCEEEEEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence 667898887654 3455555555555555 58999999999995
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.4e-09 Score=88.02 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=72.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC----CCC------------CCCCCC---CCCceeE---EEEEe--C---CeEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG----NTS------------LSHNLK---PTEGFNI---TILQK--G---EYTLN 102 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~----~~~------------~~~~~~---~t~~~~~---~~~~~--~---~~~~~ 102 (224)
...+.|+++|+.++|||||+|+|.+. ... +.+... .|+++.+ ..+.. . ..+++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 35689999999999999999999987 322 111222 3445444 33433 1 27899
Q ss_pred EEEcCCchh--------HHH---------------------HHHhhcc-CCCEEEEEE-ECCC----CCCHHHHHHHHHH
Q psy12173 103 IFELGGQEN--------VRR---------------------FWNTYFE-DTDLLVFVV-DSAD----PSKLPVAAMELKN 147 (224)
Q Consensus 103 l~D~~G~~~--------~~~---------------------~~~~~~~-~~d~ii~v~-d~~~----~~s~~~~~~~~~~ 147 (224)
++||+|-.. ... =+...++ +++..|+|. |.+- ++.....+..+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999998221 111 0222344 899999888 7651 1223344433333
Q ss_pred HHhcCCCCCCcEEEEEeCCCC
Q psy12173 148 LLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 148 ~~~~~~~~~~piilv~nK~Dl 168 (224)
.++. .++|++++.||.|-
T Consensus 175 eLk~---~~kPfiivlN~~dp 192 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHP 192 (492)
T ss_pred HHHh---cCCCEEEEEECcCC
Confidence 3333 48999999999994
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=93.56 Aligned_cols=119 Identities=14% Similarity=0.138 Sum_probs=75.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCCCCceeEEEEEeCCeEEEEEEcCCchhH------H-H---HHHh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHN-LKPTEGFNITILQKGEYTLNIFELGGQENV------R-R---FWNT 118 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~------~-~---~~~~ 118 (224)
....+|+++|.+|+||||++|.|++........ ...|+..........+..+.++||||.... . . ....
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 456799999999999999999999976333222 233444333334457789999999995431 1 1 1122
Q ss_pred hcc--CCCEEEEEEECCCCCCHHH---HHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 119 YFE--DTDLLVFVVDSADPSKLPV---AAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 119 ~~~--~~d~ii~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
++. .+|++|+|..++......+ ..+.+..++.... -..+||+.|+.|...
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence 333 5899999998764433212 2333444443211 246899999999875
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-08 Score=79.58 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=70.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CCCCC---------------------------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHN----LKPTE--------------------------------------- 87 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~----~~~t~--------------------------------------- 87 (224)
..+.++++|+.|+||||+++.+.+..+.+.+. ..|+.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999875322100 00000
Q ss_pred ----cee--EEEEEe---CCeEEEEEEcCCchh-------------HHHHHHhhcc-CCCEEEEEEECCCCCCHHHHHHH
Q psy12173 88 ----GFN--ITILQK---GEYTLNIFELGGQEN-------------VRRFWNTYFE-DTDLLVFVVDSADPSKLPVAAME 144 (224)
Q Consensus 88 ----~~~--~~~~~~---~~~~~~l~D~~G~~~-------------~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~ 144 (224)
++. .-.+.. .-.++.++||||... ...+...+++ ..+.+++|+|+...-.-....+.
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 000 001111 126799999999641 2224455666 44689999988754222222222
Q ss_pred HHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 145 LKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 145 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
...+.. .+.|+++|+||.|..+.
T Consensus 185 a~~ld~----~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDP----QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHH----cCCcEEEEEECCCCCCc
Confidence 333322 47899999999999765
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=88.26 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=59.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCe-----------------EEEEEEcCCchh------
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEY-----------------TLNIFELGGQEN------ 111 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~D~~G~~~------ 111 (224)
|+++|.|++|||||+|++++......+....|.+.+...+.+.+. .+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998865544556676777777666442 599999999432
Q ss_pred -HHHHHHhhccCCCEEEEEEECC
Q psy12173 112 -VRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 112 -~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
........++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 2223334478899999999975
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG0099|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-10 Score=88.61 Aligned_cols=83 Identities=29% Similarity=0.534 Sum_probs=71.0
Q ss_pred CceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC----------CCCHHHHHHHHHHHHhcCCCCC
Q psy12173 87 EGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD----------PSKLPVAAMELKNLLGDQRLST 156 (224)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~ 156 (224)
.|.....+.++.+++..+|++|+...+..|...+....++|||+..+. .+++.+....+..+.++.++..
T Consensus 190 sGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t 269 (379)
T KOG0099|consen 190 SGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT 269 (379)
T ss_pred cceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh
Confidence 356666777888999999999999999999999999999999998775 2346667778888888888889
Q ss_pred CcEEEEEeCCCCC
Q psy12173 157 VPILVIANKQDVP 169 (224)
Q Consensus 157 ~piilv~nK~Dl~ 169 (224)
+.+|+.+||.|+.
T Consensus 270 isvIlFLNKqDll 282 (379)
T KOG0099|consen 270 ISVILFLNKQDLL 282 (379)
T ss_pred hheeEEecHHHHH
Confidence 9999999999974
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.1e-09 Score=83.70 Aligned_cols=148 Identities=17% Similarity=0.099 Sum_probs=96.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhc----CC------CCCCC----CCCCCCceeEEEEEe--CCeEEEEEEcCCchhH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISS----GN------TSLSH----NLKPTEGFNITILQK--GEYTLNIFELGGQENV 112 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~----~~------~~~~~----~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~~ 112 (224)
...+.+|.-+|+...|||||.-+++. .. |..-+ +...-+..+..++.+ ..+++--.|+||+-+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 35689999999999999999877763 11 11100 111223355666665 4588999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH-----HHhhcCccccc
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE-----VGVALDLSSIS 187 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~ 187 (224)
-........+-|+.|+|+.++|+ .+.+.++.+.-..+- .-..+++.+||.|+.++.+.-| +.+.+. .+.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLs--e~g 204 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLS--EFG 204 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHH--HcC
Confidence 88777777888999999999997 444455544443332 2356899999999986522211 122221 122
Q ss_pred CcccceeEEEeecCC
Q psy12173 188 SRQHRIKLIATQAPS 202 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~ 202 (224)
..+.++|++.=||+.
T Consensus 205 f~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 205 FDGDNTPVIRGSALC 219 (449)
T ss_pred CCCCCCCeeecchhh
Confidence 234455888877764
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=87.26 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=65.8
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCC-CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH-HHHhhcCccccc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPS-KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE-EVGVALDLSSIS 187 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 187 (224)
+++..+...++.++|.+++|+|+.+++ ++..+.+|+..+.. .++|+++|+||+|+.+..... +..+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 466666667899999999999999887 78888888875532 479999999999997542221 2222221
Q ss_pred CcccceeEEEeecCCCCccccch
Q psy12173 188 SRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
.. +.+++++||++|.|+++.+
T Consensus 95 ~~--g~~v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 95 NI--GYQVLMTSSKNQDGLKELI 115 (245)
T ss_pred HC--CCeEEEEecCCchhHHHHH
Confidence 12 2389999999999995544
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.4e-09 Score=80.80 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=56.5
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcE--EEEEeCCCCCCC--CCH
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPI--LVIANKQDVPGA--LSA 174 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi--ilv~nK~Dl~~~--~~~ 174 (224)
....++++.|..-..... . .-+|.+|.|+|+.+.++... ... .+... ++++||+|+.+. ...
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~~ 157 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGADL 157 (199)
T ss_pred CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhccccccccH
Confidence 355677777732111111 1 12578999999998755321 111 12333 899999999853 233
Q ss_pred HHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 175 EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+.+.+.+.... ...+++++||++|+|+ +++.+.+.+
T Consensus 158 ~~~~~~~~~~~-----~~~~i~~~Sa~~g~gi-~el~~~i~~ 193 (199)
T TIGR00101 158 GVMERDAKKMR-----GEKPFIFTNLKTKEGL-DTVIDWIEH 193 (199)
T ss_pred HHHHHHHHHhC-----CCCCEEEEECCCCCCH-HHHHHHHHh
Confidence 33333333211 1238999999999999 555555544
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.4e-11 Score=91.06 Aligned_cols=88 Identities=18% Similarity=0.395 Sum_probs=74.5
Q ss_pred CCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC----------CCCCHHHHHHHHHHHHhcCC
Q psy12173 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DPSKLPVAAMELKNLLGDQR 153 (224)
Q Consensus 84 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~ 153 (224)
.||+|...+++......++++|++|+...+..|.+++++.-.++|++..+ +.+++++....+..++...+
T Consensus 184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW 263 (359)
T KOG0085|consen 184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 263 (359)
T ss_pred cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence 45677777888888899999999999999999999888887777766544 45678888889999999999
Q ss_pred CCCCcEEEEEeCCCCCCC
Q psy12173 154 LSTVPILVIANKQDVPGA 171 (224)
Q Consensus 154 ~~~~piilv~nK~Dl~~~ 171 (224)
+.+.++|+..||.|+.++
T Consensus 264 F~nssVIlFLNKkDlLEe 281 (359)
T KOG0085|consen 264 FQNSSVILFLNKKDLLEE 281 (359)
T ss_pred ccCCceEEEechhhhhhh
Confidence 999999999999998654
|
|
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-09 Score=92.30 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=84.6
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC---C---CCCCC-------ceeEE--EEEe-------CCeEEEEEE
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSH---N---LKPTE-------GFNIT--ILQK-------GEYTLNIFE 105 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~---~---~~~t~-------~~~~~--~~~~-------~~~~~~l~D 105 (224)
.....++|+++|+-.+|||+|+..|.....+..+ . ..+++ +..++ ..+. +.+-+++.|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 3456789999999999999999999987654310 0 00110 11111 1111 237799999
Q ss_pred cCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 106 LGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 106 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
||||..+..-....++.+|++++|+|+.++-.+. .++.+.+..++ +.|+++|.||.|+
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikhaiq~----~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKHAIQN----RLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHHHHhc----cCcEEEEEehhHH
Confidence 9999999988877899999999999999985544 45556666554 7999999999996
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.3e-09 Score=83.79 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=66.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--------CCCCCceeEEEEEe--CC--eEEEEEEcCCch---------
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHN--------LKPTEGFNITILQK--GE--YTLNIFELGGQE--------- 110 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~--------~~~t~~~~~~~~~~--~~--~~~~l~D~~G~~--------- 110 (224)
.++|+|+|+.|+|||||+|.|.......... ..++.......... ++ ..+.++||||..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 5799999999999999999999876444221 11222233332222 32 689999999921
Q ss_pred ---------hHHHHHHhh---------ccCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 111 ---------NVRRFWNTY---------FEDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 111 ---------~~~~~~~~~---------~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.+....... =...|+++|+++.+.. .+... .+.+..+. ..+++|-|+.|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS-----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc-----ccccEEeEEecccccCH
Confidence 111111111 1245899999998754 23333 23444442 35789999999998665
Q ss_pred CCH
Q psy12173 172 LSA 174 (224)
Q Consensus 172 ~~~ 174 (224)
...
T Consensus 158 ~el 160 (281)
T PF00735_consen 158 EEL 160 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-08 Score=85.33 Aligned_cols=155 Identities=20% Similarity=0.240 Sum_probs=102.2
Q ss_pred cccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhc
Q psy12173 45 SKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQK--GEYTLNIFELGGQENVRRFWNTYF 120 (224)
Q Consensus 45 ~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~ 120 (224)
.+....+.+++.++|+.++|||.+++.+.++.+.. ....+.. +....+.. ....+.+-|.+-. .........
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke- 493 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE- 493 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhcccccc--ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-
Confidence 34455678999999999999999999999988776 3323322 22222222 3355666676643 222222222
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-----CCHHHHHhhcCcccccCcccceeE
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-----LSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
..||++.++||.+++.++......+...... ...|+++|++|+|+.+. ...+++...+++. +.
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~---------~P 561 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP---------PP 561 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC---------CC
Confidence 6799999999999999999887766555443 58999999999999653 3456666666653 45
Q ss_pred EEeecCCCCccccchHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+.+|.++ .+-.+.|...+..
T Consensus 562 ~~~S~~~-~~s~~lf~kL~~~ 581 (625)
T KOG1707|consen 562 IHISSKT-LSSNELFIKLATM 581 (625)
T ss_pred eeeccCC-CCCchHHHHHHHh
Confidence 6667764 2223444444433
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-09 Score=83.33 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=35.2
Q ss_pred CCcEEEEEeCCCCCCCCC--HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 156 TVPILVIANKQDVPGALS--AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 156 ~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
..|.++++||+|+.+... ..+..+.++.. ... ++++++||++|.|+ +.+.+.+.+
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~---~~~--~~i~~~Sa~~g~gv-~~l~~~i~~ 204 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKI---NPE--AEIILMSLKTGEGL-DEWLEFLEG 204 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHh---CCC--CCEEEEECCCCCCH-HHHHHHHHH
Confidence 467899999999975422 23333333211 122 38999999999999 555555543
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-08 Score=82.20 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=100.1
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--------------CCCCceeEEEEEe-----------------
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNL--------------KPTEGFNITILQK----------------- 96 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~--------------~~t~~~~~~~~~~----------------- 96 (224)
+.+.++.|.+.|+.+.|||||+-.|..+.....+.. ..+.+.+...+-+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 446688999999999999999999987765442111 1111222222211
Q ss_pred ------CCeEEEEEEcCCchhHHHHH--HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 97 ------GEYTLNIFELGGQENVRRFW--NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 97 ------~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
.+.-+.++||.|++.|-+.. ...-++.|..++++.+++.-+ ...+...-+... ...|++++.+|+|+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a---~~lPviVvvTK~D~ 267 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA---MELPVIVVVTKIDM 267 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh---hcCCEEEEEEeccc
Confidence 13568899999999988744 445578899999999999743 233333333332 47999999999999
Q ss_pred CCCCCH----HHHHhhcCccc------------------ccCcccceeEEEeecCCCCcc
Q psy12173 169 PGALSA----EEVGVALDLSS------------------ISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 169 ~~~~~~----~~~~~~~~~~~------------------~~~~~~~~~~~~~Sa~~~~gv 206 (224)
..+... +++...++... .+....-+|++.+|+.+|+|.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gl 327 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGL 327 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccH
Confidence 776332 33333332210 111222369999999999998
|
|
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.6e-08 Score=77.76 Aligned_cols=82 Identities=17% Similarity=0.335 Sum_probs=57.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC----eEEEEEEcCCchhHHHHHHhhccCC---
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE----YTLNIFELGGQENVRRFWNTYFEDT--- 123 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~l~D~~G~~~~~~~~~~~~~~~--- 123 (224)
..-+|+++|+.++|||||+.+|.+.. .. ...+-+++-+-++..+. .++.+|-+.|..-...++...+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e-~~--KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE-TV--KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc-cc--CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 45689999999999999999999876 22 23344445554444322 5688898888776666655444333
Q ss_pred -CEEEEEEECCCC
Q psy12173 124 -DLLVFVVDSADP 135 (224)
Q Consensus 124 -d~ii~v~d~~~~ 135 (224)
-.+|++.|++++
T Consensus 128 etlviltasms~P 140 (473)
T KOG3905|consen 128 ETLVILTASMSNP 140 (473)
T ss_pred ceEEEEEEecCCc
Confidence 458899999998
|
|
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.9e-08 Score=77.50 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=67.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC-----------------CeEEEEEEcCCchh-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-----------------EYTLNIFELGGQEN- 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~D~~G~~~- 111 (224)
.+++++.++|.|++|||||+|.++.......+..+.|++++...+... .-.++++|++|...
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 467899999999999999999999988777677777888777766552 15689999999543
Q ss_pred ------HHHHHHhhccCCCEEEEEEECCC
Q psy12173 112 ------VRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 112 ------~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
........++++|+++.|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 23334445899999999999775
|
|
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=78.08 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=86.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeC-------------------------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKG------------------------------- 97 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~------------------------------- 97 (224)
....=|+++|+-..||||+++.|+...|+.. ....||+++....+..+
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 4567799999999999999999999988752 13345554333222110
Q ss_pred -------C---eEEEEEEcCCchh-----------HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCC
Q psy12173 98 -------E---YTLNIFELGGQEN-----------VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLST 156 (224)
Q Consensus 98 -------~---~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 156 (224)
+ ..++++||||.-+ +......+...+|.|+++||....+--++....+.++..+ .
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----E 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----c
Confidence 0 3589999999432 3445677889999999999999887777777777777654 4
Q ss_pred CcEEEEEeCCCCCCC
Q psy12173 157 VPILVIANKQDVPGA 171 (224)
Q Consensus 157 ~piilv~nK~Dl~~~ 171 (224)
-.+-||.||+|..+.
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred ceeEEEeccccccCH
Confidence 567889999998654
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-08 Score=84.17 Aligned_cols=80 Identities=25% Similarity=0.413 Sum_probs=56.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--ceeEEEEEeC---C-eEEEEEEcCCchhHHHHHHhhccCC-
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTE--GFNITILQKG---E-YTLNIFELGGQENVRRFWNTYFEDT- 123 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~--~~~~~~~~~~---~-~~~~l~D~~G~~~~~~~~~~~~~~~- 123 (224)
...+|+|+|+.++|||||+.+|.+.. ...++. +|.+..+..+ + ..+.+|-+.|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e-----~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~ 98 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE-----DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN 98 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC-----CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence 34699999999999999999997654 223343 4555444332 2 4689999988777777765544432
Q ss_pred ---CEEEEEEECCCC
Q psy12173 124 ---DLLVFVVDSADP 135 (224)
Q Consensus 124 ---d~ii~v~d~~~~ 135 (224)
-.+|+|+|.+.|
T Consensus 99 l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKP 113 (472)
T ss_pred ccceEEEEEecCCCh
Confidence 358999999996
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-08 Score=74.12 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=59.4
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCccc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQH 191 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 191 (224)
++....+..+++|++++|+|++++..... ..+...... .++|+++|+||+|+.+.....+.....+ ...
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-----~~~- 70 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKE-----SEG- 70 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHH-----hCC-
Confidence 34556677788999999999988643222 122222222 3689999999999964311112111111 111
Q ss_pred ceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 192 RIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 192 ~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.+++++||++|.|+ +.+...+.+.+
T Consensus 71 -~~~~~iSa~~~~gi-~~L~~~l~~~~ 95 (156)
T cd01859 71 -IPVVYVSAKERLGT-KILRRTIKELA 95 (156)
T ss_pred -CcEEEEEccccccH-HHHHHHHHHHH
Confidence 27899999999999 66666666654
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-07 Score=73.76 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=73.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH-------HHhhccC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF-------WNTYFED 122 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~~~~~ 122 (224)
....+|+++|.|.+|||||+..++.-+....+.-+.|+......+.+++-.+.+.|+||..+..++ .....+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 467799999999999999999999876443334445666666778889999999999996554332 2334678
Q ss_pred CCEEEEEEECCCCCCHHH-HHHHHHHH
Q psy12173 123 TDLLVFVVDSADPSKLPV-AAMELKNL 148 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~-~~~~~~~~ 148 (224)
+|.++.|+|++..+-... ++..+...
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 999999999998765443 34445544
|
|
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-08 Score=86.92 Aligned_cols=157 Identities=18% Similarity=0.252 Sum_probs=111.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
-..+|+.++|..++|||+|+.+++.+.|.. ...|.-+-..+.+.. ....+.+.|.+|..... |..+.|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~--~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ-----ft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQ--DESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ-----FCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceecc--ccCCcCccceeeEEeeccceEeeeecccCCchhh-----hhhhccceE
Confidence 467899999999999999999999988776 444444433333333 45677888888744332 567899999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC----CCCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP----GALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|||.+.+..+++.+......+..+.....+|+++++++.-.. ......+..+... ... .|.+++++|-.|
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~----~~k--rcsy~et~atyG 174 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSA----QMK--RCSYYETCATYG 174 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHH----hcC--ccceeecchhhh
Confidence 999999999999998888888777665678888888865332 2122222211111 112 248999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.+++..|.....+.+.
T Consensus 175 lnv~rvf~~~~~k~i~ 190 (749)
T KOG0705|consen 175 LNVERVFQEVAQKIVQ 190 (749)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9998888877776655
|
|
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-09 Score=83.52 Aligned_cols=165 Identities=15% Similarity=0.039 Sum_probs=103.4
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCCCC--c------------------------------eeEEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGN---TSLSHNLKPTE--G------------------------------FNITI 93 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~---~~~~~~~~~t~--~------------------------------~~~~~ 93 (224)
.+..++|.-+|+...||||+++++.+-+ |..+-+...|+ + +....
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 3567899999999999999999998744 11100000010 0 00000
Q ss_pred EEeC-----CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 94 LQKG-----EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 94 ~~~~-----~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
.... -+++.++|.||++-....+.....--|+.++++..+......+..+.+..+--- .-+.++++-||.|+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDl 191 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDL 191 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhh
Confidence 0001 157889999999998887766555668999999888876655555555443111 23678999999999
Q ss_pred CCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 169 PGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
..+....+..+...........-+++++++||-.++|+ +...+.+.+.
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNI-d~v~eyivkk 239 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNI-DVVCEYIVKK 239 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccCh-HHHHHHHHhc
Confidence 87644333322222111111222349999999999999 6666666554
|
|
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=74.49 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=90.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCcee-EEEEEeCCeEEEEEEcCCc----------hhHHHHH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFN-ITILQKGEYTLNIFELGGQ----------ENVRRFW 116 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~-~~~~~~~~~~~~l~D~~G~----------~~~~~~~ 116 (224)
....+.++++|-.++|||||+|.++..+-.. .... +.+.. .-....-+..+.++|.||. .++..+.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~--~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIA--DTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhh--hhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhH
Confidence 3567899999999999999999999877443 2222 33322 2223334678999999991 1222233
Q ss_pred Hhhc---cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC------HHHHHhhc-Cccc-
Q psy12173 117 NTYF---EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS------AEEVGVAL-DLSS- 185 (224)
Q Consensus 117 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~~~~~-~~~~- 185 (224)
..++ ++--.+.+.+|++-+ +........+++.+ .++|+.+|.||+|...... ...+...+ .+..
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 2222 122345556677654 44444444455555 5899999999999865411 11111100 0000
Q ss_pred ccCcccceeEEEeecCCCCccccchH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
..... -+|+.+|+.++.|+++.+.
T Consensus 286 ~f~~~--~Pw~~~Ssvt~~Grd~Ll~ 309 (320)
T KOG2486|consen 286 VFLVD--LPWIYVSSVTSLGRDLLLL 309 (320)
T ss_pred ceecc--CCceeeecccccCceeeee
Confidence 01112 2788999999999965544
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-07 Score=77.48 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchhH--
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNT-SLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQENV-- 112 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~-- 112 (224)
+++.++|.|++|||||++.++.... ...+....|..++...+.+.+ ..+.++|.||....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999999885 443445566777777666643 36899999995542
Q ss_pred -----HHHHHhhccCCCEEEEEEECCC
Q psy12173 113 -----RRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 113 -----~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
.......++.+|++++|++..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 2244456899999999999864
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=69.56 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=44.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
.-|+|+|++.++-... ...+... ..=++|+||.|+.+.. +.+........- ..+++|+.+|+++
T Consensus 120 ~~v~VidvteGe~~P~--------K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~-----np~~~ii~~n~kt 185 (202)
T COG0378 120 LRVVVIDVTEGEDIPR--------KGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEV-----NPEAPIIFTNLKT 185 (202)
T ss_pred eEEEEEECCCCCCCcc--------cCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHh-----CCCCCEEEEeCCC
Confidence 6788888887643210 0011101 1348999999998753 334444433221 1233999999999
Q ss_pred CCccccchHHHHH
Q psy12173 203 NLHHLHVSVVEAE 215 (224)
Q Consensus 203 ~~gv~~~~~~~i~ 215 (224)
|+|+ +++...+.
T Consensus 186 g~G~-~~~~~~i~ 197 (202)
T COG0378 186 GEGL-DEWLRFIE 197 (202)
T ss_pred CcCH-HHHHHHHH
Confidence 9999 55444433
|
|
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=73.08 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=101.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhHHH---HHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENVRR---FWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~ii 127 (224)
..+|+++|...|||||+.+-...+-.+..+... +|......++...-.++.+||.|||..+-. -....++++.+.|
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 356999999999999999888877644422211 222233333333447899999999876432 2244588999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhc--CCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcc--cccCcccceeEEEee
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGD--QRLSTVPILVIANKQDVPGA----LSAEEVGVALDLS--SISSRQHRIKLIATQ 199 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~S 199 (224)
+|+|+.+. ..+....+...... .--+++.+-+...|.|...+ ..+.++.+..+-. ........+.|.-+|
T Consensus 107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 99999885 33322222222221 12256788899999998654 1222232222111 111122234788887
Q ss_pred cCCCCccccchHHHHHHHHHHhhc
Q psy12173 200 APSNLHHLHVSVVEAEQAMYALSQ 223 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~~~~~ 223 (224)
-. ...+-|+|...+.+.+-+|+.
T Consensus 185 Iy-DHSIfEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 185 IY-DHSIFEAFSKVVQKLIPQLPT 207 (347)
T ss_pred ec-chHHHHHHHHHHHHHhhhchh
Confidence 65 444668888777777666653
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.4e-08 Score=77.61 Aligned_cols=55 Identities=20% Similarity=0.092 Sum_probs=35.6
Q ss_pred CCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 156 TVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 156 ~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
..+-++++||+|+.... +.++..+.+.. .....+++++||++|+|+ +++.+.+.+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~-----lnp~a~I~~vSA~tGeGl-d~L~~~L~~ 286 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE-----VNPEIEIILISATSGEGM-DQWLNWLET 286 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh-----hCCCCcEEEEECCCCCCH-HHHHHHHHH
Confidence 35669999999997632 23333333321 122348999999999999 666655544
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-07 Score=71.66 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=60.3
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhc---Cccccc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVAL---DLSSIS 187 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~---~~~~~~ 187 (224)
++.++..+++.+|++++|+|+.++..- ....+ ... ..++|+++|+||+|+.... ...+..... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~--~~~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS--LIPRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc--cchhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 677888889999999999999986421 11111 111 1468999999999996542 222222221 000000
Q ss_pred CcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 188 SRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.... .++++||++|.|+ +++...+.+.+
T Consensus 97 ~~~~--~i~~vSA~~~~gi-~eL~~~l~~~l 124 (190)
T cd01855 97 LKPK--DVILISAKKGWGV-EELINAIKKLA 124 (190)
T ss_pred CCcc--cEEEEECCCCCCH-HHHHHHHHHHh
Confidence 0112 6899999999999 55556665544
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-06 Score=76.86 Aligned_cols=147 Identities=18% Similarity=0.275 Sum_probs=88.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-----------------------------------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG----------------------------------------- 88 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~----------------------------------------- 88 (224)
+.+.||++.|..++||||++|+++.++..+++ ..+++.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g-~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSG-IGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCccc-ccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 46789999999999999999999987743311 111110
Q ss_pred ---eeEEEEEeCC-------eEEEEEEcCCchh---HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCC
Q psy12173 89 ---FNITILQKGE-------YTLNIFELGGQEN---VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLS 155 (224)
Q Consensus 89 ---~~~~~~~~~~-------~~~~l~D~~G~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 155 (224)
.....+.+.+ ..+.++|.||.+. ..+-...+...+|++|+|.++.+. +...+..+...... .
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~---~ 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE---E 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc---c
Confidence 1111222211 3688999999553 333446678899999999988775 44444444443333 3
Q ss_pred CCcEEEEEeCCCCCCC--CCHHHHHhhc-CcccccCcccceeEEEeecCC
Q psy12173 156 TVPILVIANKQDVPGA--LSAEEVGVAL-DLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 156 ~~piilv~nK~Dl~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++.++++.||+|.... ...+++.... ++.....+..+..++.+||+.
T Consensus 261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 5557888889998654 2234443331 222222222233688888653
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-07 Score=81.56 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=79.4
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC------------CCCCceeEEE----EEeCCeEEEEEEcCCchhH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNL------------KPTEGFNITI----LQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~------------~~t~~~~~~~----~~~~~~~~~l~D~~G~~~~ 112 (224)
.....++.++.+...|||||...|....-..+... ..+-+.+.+. ...++..++++|+|||.+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 34678999999999999999999986542221111 1112222221 2236789999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
.+......+-+|++++.+|+..+---+ ....+.+. +..+...++|.||+|.
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~q-t~~vlrq~----~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQ-TYAVLRQA----WIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchh-HHHHHHHH----HHccCceEEEEehhhh
Confidence 998888888999999999998862222 22222222 2246778999999993
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.9e-07 Score=76.22 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=89.4
Q ss_pred ccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 46 KVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 46 ~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
..+.++.+-++++|+||+|||||++.|....... ....+.-.+..+..+.+.+++..+| ....++.. ...-+|.
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~---ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDL 136 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ---TIDEIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADL 136 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh---hhhccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhhe
Confidence 3455677889999999999999999998654211 1111112233344466889999999 44444433 3567999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+++.+|.+-+-.++.. + +..++.. ++.| ++-|++..|+... ......++.+..--......++++|..|-.
T Consensus 137 VlLlIdgnfGfEMETm-E-FLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 137 VLLLIDGNFGFEMETM-E-FLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred eEEEeccccCceehHH-H-HHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 9999999987443332 2 3344444 3555 6678899999876 345555555432111111113477777754
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.4e-07 Score=76.56 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=57.3
Q ss_pred HhhccCCCEEEEEEECCCCC-CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeE
Q psy12173 117 NTYFEDTDLLVFVVDSADPS-KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
...+.++|.+++|+|+.+++ ....+..++.... . .++|+++|+||+|+.......++.+.+. ..+ .++
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~-~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g--~~v 152 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAE-S---TGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWG--YQP 152 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEEchhcCChHHHHHHHHHHH-----hcC--CeE
Confidence 34578999999999999876 3334566665442 2 4799999999999975422223333221 112 279
Q ss_pred EEeecCCCCccccchHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEA 214 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i 214 (224)
+++||++|.|+ +++...+
T Consensus 153 ~~iSA~tg~GI-~eL~~~L 170 (352)
T PRK12289 153 LFISVETGIGL-EALLEQL 170 (352)
T ss_pred EEEEcCCCCCH-HHHhhhh
Confidence 99999999999 4444333
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-07 Score=66.81 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
+++++|.+|+|||||+|++.+......... +..+.....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSAT-PGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCC-CCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998875432121 11122223333333 6899999995
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-07 Score=68.46 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=37.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
...+|+++|.+|+|||||+|++.+...........++. ....+. .+..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~-~~~~~~-~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETK-VWQYIT-LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeE-eEEEEE-cCCCEEEEECcCC
Confidence 35689999999999999999999876433222222211 111111 2345899999993
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-07 Score=74.67 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=58.8
Q ss_pred HhhccCCCEEEEEEECCCCC-CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeE
Q psy12173 117 NTYFEDTDLLVFVVDSADPS-KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
+..+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.++........... ... .++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~g--~~v 141 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEAL-----ALG--YPV 141 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHH-----hCC--CeE
Confidence 44588999999999999987 77777777665543 3789999999999976521111111111 112 289
Q ss_pred EEeecCCCCccccchHHH
Q psy12173 196 IATQAPSNLHHLHVSVVE 213 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~ 213 (224)
+++||+++.|+ +.+...
T Consensus 142 ~~vSA~~g~gi-~~L~~~ 158 (287)
T cd01854 142 LAVSAKTGEGL-DELREY 158 (287)
T ss_pred EEEECCCCccH-HHHHhh
Confidence 99999999999 444433
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=84.35 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=69.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CCCCc-eeEEEEEe-CCeEEEEEEcCC----ch----hHHHHHHhh-
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNL--KPTEG-FNITILQK-GEYTLNIFELGG----QE----NVRRFWNTY- 119 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~--~~t~~-~~~~~~~~-~~~~~~l~D~~G----~~----~~~~~~~~~- 119 (224)
+=.+|+|++|+||||++.+- +..|+..... ..+.+ -....+.+ -..+-.++||+| ++ ..+..|..+
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 44799999999999999988 4444432111 11111 01112332 223567999999 21 122223222
Q ss_pred --------ccCCCEEEEEEECCCCCC---------HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 120 --------FEDTDLLVFVVDSADPSK---------LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 120 --------~~~~d~ii~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
-+..|++|+++|+.+.-. ...+...+.++..... ...|+.+++||+|+...
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhcC
Confidence 256899999999887422 1233444455544322 47999999999999754
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-06 Score=72.77 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=90.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCC----------------CCCCCCCCceeEE-----------------EEEe-
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSL----------------SHNLKPTEGFNIT-----------------ILQK- 96 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~----------------~~~~~~t~~~~~~-----------------~~~~- 96 (224)
-..+|+++|+..+|||||+--|+++.... ++...++++.++. .++|
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 46899999999999999998887655322 1122222221111 1111
Q ss_pred -----CCeEEEEEEcCCchhHHHHH--HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 97 -----GEYTLNIFELGGQENVRRFW--NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 97 -----~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
....+.++|+.|++.|.... ...-+-.|..++++-++-. -.....+.+.-.+. ..+|+++|++|+|.+
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa----L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA----LHVPVFVVVTKIDMC 286 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh----hcCcEEEEEEeeccC
Confidence 12568999999999998643 3334567888888877654 11112222222222 379999999999998
Q ss_pred CCCCHHHHH----hhcCccccc---------------------CcccceeEEEeecCCCCcc
Q psy12173 170 GALSAEEVG----VALDLSSIS---------------------SRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 170 ~~~~~~~~~----~~~~~~~~~---------------------~~~~~~~~~~~Sa~~~~gv 206 (224)
..--.+|-. ..++....+ .+. |++|.+|..+|.|+
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~--CPIFQvSNVtG~NL 346 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERV--CPIFQVSNVTGTNL 346 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccc--cceEEeccccCCCh
Confidence 763333321 122211111 123 69999999999998
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-06 Score=70.21 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=73.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC--------CCCCCCceeEEEEEe--CC--eEEEEEEcCCchh-------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH--------NLKPTEGFNITILQK--GE--YTLNIFELGGQEN------- 111 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~--------~~~~t~~~~~~~~~~--~~--~~~~l~D~~G~~~------- 111 (224)
-.++|+++|+.|+|||||+|.|++....... ...+++......... ++ ..++++||||--+
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 4689999999999999999999987432211 123444444444333 33 6899999999211
Q ss_pred -------HHHHHHhhc--------------cCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 112 -------VRRFWNTYF--------------EDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 112 -------~~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
...+...++ ..+|+++|.+..+.- .+..+ ...+..+. ..+-+|-|+.|+|..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeeccccC
Confidence 011111111 246889999886653 23333 23344443 246688899999987
Q ss_pred CCCCHHHH
Q psy12173 170 GALSAEEV 177 (224)
Q Consensus 170 ~~~~~~~~ 177 (224)
......++
T Consensus 176 T~~El~~~ 183 (373)
T COG5019 176 TDDELAEF 183 (373)
T ss_pred CHHHHHHH
Confidence 65444333
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.47 E-value=6e-07 Score=66.73 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=55.6
Q ss_pred hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
.++.+|.+++|+|+.++..- ....+...+... ..++|+++|+||+|+.++....+..+.+.. .+....+++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~------~~~~~~~~i 75 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK------EYPTIAFHA 75 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc------CCcEEEEEe
Confidence 47889999999999987321 122233333221 246899999999999654222222222221 111146889
Q ss_pred ecCCCCccccchHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l 218 (224)
||+.+.|+ +.+...+.+.+
T Consensus 76 Sa~~~~~~-~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGK-GSLIQLLRQFS 94 (157)
T ss_pred eccccccH-HHHHHHHHHHH
Confidence 99999999 66666666543
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.3e-07 Score=74.61 Aligned_cols=83 Identities=14% Similarity=0.051 Sum_probs=55.2
Q ss_pred hccCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhcCcccccCcccceeEE
Q psy12173 119 YFEDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
...++|.+++|+|+.++++.... ..|+..+ .. .++|+++|+||+|+.+.. ...+..+.++ .... +++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~~g~--~v~ 145 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALYR-----AIGY--DVL 145 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----HCCC--eEE
Confidence 36899999999999988776655 4444443 33 478999999999996331 1112222221 1122 899
Q ss_pred EeecCCCCccccchHHH
Q psy12173 197 ATQAPSNLHHLHVSVVE 213 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~ 213 (224)
++||+++.|+ +++...
T Consensus 146 ~vSA~~g~gi-~~L~~~ 161 (298)
T PRK00098 146 ELSAKEGEGL-DELKPL 161 (298)
T ss_pred EEeCCCCccH-HHHHhh
Confidence 9999999999 444433
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.9e-07 Score=68.26 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=37.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
..++++++|.+|+|||||+|++.+.......... .|.+. ..+.. +..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~-~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHL-DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEe-CCCEEEEECcCC
Confidence 4579999999999999999999987743322222 12222 22222 246899999993
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.9e-07 Score=65.58 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=49.2
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (224)
..++.+|++++|+|+.++.+.. ...+..++.... .++|+++|+||+|+.++....+..+.++. ... ++++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~-----~~~--~ii~ 76 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKK-----EGI--VVVF 76 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHh-----cCC--eEEE
Confidence 3478999999999999875533 122333332211 47899999999999654222222232221 112 7899
Q ss_pred eecCCCCc
Q psy12173 198 TQAPSNLH 205 (224)
Q Consensus 198 ~Sa~~~~g 205 (224)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998863
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.6e-06 Score=68.63 Aligned_cols=117 Identities=17% Similarity=0.263 Sum_probs=70.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------CCCCCCceeEEEEEe--CC--eEEEEEEcCCchh--------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH-------NLKPTEGFNITILQK--GE--YTLNIFELGGQEN-------- 111 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-------~~~~t~~~~~~~~~~--~~--~~~~l~D~~G~~~-------- 111 (224)
..+++.++|+.|.|||||+|.|+...+.... ....|..+....... ++ .+++++||||--+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 4589999999999999999999987543311 111133333333333 33 6788999999211
Q ss_pred ------HHHHHHhh-----------cc--CCCEEEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 ------VRRFWNTY-----------FE--DTDLLVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ------~~~~~~~~-----------~~--~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.......+ +. ..|+++|.+..+.- .+..+. ..+..+. ..+.+|-|.-|+|....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccCCH
Confidence 11111111 12 56889999987653 233332 2233332 36788999999998765
Q ss_pred CC
Q psy12173 172 LS 173 (224)
Q Consensus 172 ~~ 173 (224)
..
T Consensus 174 ~E 175 (366)
T KOG2655|consen 174 DE 175 (366)
T ss_pred HH
Confidence 33
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=64.43 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=51.2
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH-HHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELK-NLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
|.+++|+|+.++.+... .++. ..... .++|+++|+||+|+.......++...+.. . ....++.+||++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~-----~-~~~~ii~vSa~~ 69 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRH-----S-YPTIPFKISATN 69 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHh-----h-CCceEEEEeccC
Confidence 78999999998755432 2233 23222 47999999999999644211222111110 0 112789999999
Q ss_pred CCccccchHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQA 217 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~ 217 (224)
|.|+ +++.+.+.+.
T Consensus 70 ~~gi-~~L~~~i~~~ 83 (155)
T cd01849 70 GQGI-EKKESAFTKQ 83 (155)
T ss_pred CcCh-hhHHHHHHHH
Confidence 9999 6666666543
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=66.35 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=38.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
..++++++|.+++|||||++++.+..+.... ..+.+......+..+ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 4579999999999999999999987753311 112222222223332 56899999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=65.24 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=57.9
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQ 190 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 190 (224)
+........+..+|.+++|+|++++...... .+.... .++|.++|+||+|+.+.....+..+.++. ..
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~ 75 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KG 75 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cC
Confidence 3344556668999999999999876442221 122211 35799999999999644211122122111 11
Q ss_pred cceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 191 HRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
. .++.+||+++.|+ +++...+.+.+
T Consensus 76 ~--~vi~iSa~~~~gi-~~L~~~l~~~l 100 (171)
T cd01856 76 E--KVLFVNAKSGKGV-KKLLKAAKKLL 100 (171)
T ss_pred C--eEEEEECCCcccH-HHHHHHHHHHH
Confidence 2 6899999999999 66666666553
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-05 Score=63.65 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=57.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCC-CCceeEEEEEe---CCeEEEEEEcCCchhHHH------HHHh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG--NTSLSHNLKP-TEGFNITILQK---GEYTLNIFELGGQENVRR------FWNT 118 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~--~~~~~~~~~~-t~~~~~~~~~~---~~~~~~l~D~~G~~~~~~------~~~~ 118 (224)
+..-|.++|++++|||+|+|++.+. .|.......+ |.|.-...... .+..+.++||+|...... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4567899999999999999999998 7765444333 44444444443 357899999999543211 1111
Q ss_pred hcc--CCCEEEEEEECCCCC
Q psy12173 119 YFE--DTDLLVFVVDSADPS 136 (224)
Q Consensus 119 ~~~--~~d~ii~v~d~~~~~ 136 (224)
.+. -++.+|+..+....+
T Consensus 86 ~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 86 ALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHhCEEEEeccCcccH
Confidence 222 378888888776543
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-06 Score=72.14 Aligned_cols=151 Identities=15% Similarity=0.223 Sum_probs=93.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------------C-----CCCCCceeEE--EEEe-----------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH----------------N-----LKPTEGFNIT--ILQK----------- 96 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~----------------~-----~~~t~~~~~~--~~~~----------- 96 (224)
-.++++++|...+|||||+--|+.+.....+ . ...+++|+.. .+++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 4689999999999999999988876533211 0 1112232211 0111
Q ss_pred -CCeEEEEEEcCCchhHHHHHHhhcc--CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC
Q psy12173 97 -GEYTLNIFELGGQENVRRFWNTYFE--DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173 (224)
Q Consensus 97 -~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 173 (224)
...-+.++|++|+.+|.......+. ..|..++|+++..+-... .++.+.-+.. -++|++++++|+|+.....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence 1245889999999999875533332 458888999888764332 2233333322 3899999999999988744
Q ss_pred HHH----HHhhcCcccccC-------------------cccceeEEEeecCCCCcc
Q psy12173 174 AEE----VGVALDLSSISS-------------------RQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 174 ~~~----~~~~~~~~~~~~-------------------~~~~~~~~~~Sa~~~~gv 206 (224)
.+. +...+......+ ...-+|++.+|..+|+|+
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl 376 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGL 376 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccch
Confidence 333 222222111111 122358999999999998
|
|
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=68.56 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=60.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH-------HHHhhccCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR-------FWNTYFEDT 123 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~ 123 (224)
...+|.++|.|.+||||++..+.+...+.......|.-.......+++-++.+.|+||..+... +.....+.|
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3458999999999999999999987744422333333334445556788999999999553221 223346789
Q ss_pred CEEEEEEECCCC
Q psy12173 124 DLLVFVVDSADP 135 (224)
Q Consensus 124 d~ii~v~d~~~~ 135 (224)
+.+++|+|+..|
T Consensus 138 nli~~vld~~kp 149 (358)
T KOG1487|consen 138 NLIFIVLDVLKP 149 (358)
T ss_pred cEEEEEeeccCc
Confidence 999999998874
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-06 Score=67.08 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSL-------SHNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
..+++++|.+|+|||||+|+|.+..... .....|.+......+..+. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 4689999999999999999999854211 0011111111122222222 5899999993
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.4e-06 Score=70.54 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=58.8
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
..++|.+++|++.....++..+..|+.... . .++|.++|+||+|+......+...+..+. ..... .+++++|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g--~~v~~vS 189 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-T---LGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIG--YRVLMVS 189 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-h---cCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCC--CeEEEEe
Confidence 467999999999988888888888876443 2 47899999999999765322222222211 11122 2899999
Q ss_pred cCCCCccccchHHHH
Q psy12173 200 APSNLHHLHVSVVEA 214 (224)
Q Consensus 200 a~~~~gv~~~~~~~i 214 (224)
|+++.|+ +++...+
T Consensus 190 A~tg~Gi-deL~~~L 203 (347)
T PRK12288 190 SHTGEGL-EELEAAL 203 (347)
T ss_pred CCCCcCH-HHHHHHH
Confidence 9999999 4444444
|
|
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=5e-06 Score=64.75 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=70.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------CCCCCCceeEE--EEEeCC--eEEEEEEcCCc----------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH-------NLKPTEGFNIT--ILQKGE--YTLNIFELGGQ---------- 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-------~~~~t~~~~~~--~~~~~~--~~~~l~D~~G~---------- 109 (224)
..++|.++|..|.|||||+|.+...+..... .+..|+..... .+..++ .++.++||||-
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 5789999999999999999999875533210 11112221111 122233 57889999991
Q ss_pred --------hhHHHHH--------Hhhcc--CCCEEEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 110 --------ENVRRFW--------NTYFE--DTDLLVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 110 --------~~~~~~~--------~~~~~--~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+.+...+ ...+. ..+++++.+..+.- ++..+. +.+..+.. -+.+|-|.-|+|-..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeeccccc
Confidence 1112211 11222 45778888877754 333332 23333322 356788889999755
Q ss_pred CCCHHHHHhhc
Q psy12173 171 ALSAEEVGVAL 181 (224)
Q Consensus 171 ~~~~~~~~~~~ 181 (224)
-....++++..
T Consensus 199 leEr~~FkqrI 209 (336)
T KOG1547|consen 199 LEERSAFKQRI 209 (336)
T ss_pred HHHHHHHHHHH
Confidence 43344444444
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-06 Score=62.84 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=38.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCCeEEEEEEcCCc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~l~D~~G~ 109 (224)
...+++++|.+++||||+++++.+.... .+.++.+.+.. .+...+..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA---STSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc---ccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 4578999999999999999999976532 23344443322 11113347999999993
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=69.14 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=60.8
Q ss_pred CCchh-HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccc
Q psy12173 107 GGQEN-VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSS 185 (224)
Q Consensus 107 ~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 185 (224)
|||.. ........++.+|++++|+|+..+.+-.. ..+.... .++|+++|.||+|+.+.....++.+.++.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 55442 23345566899999999999987644322 1222332 25799999999999643212222222211
Q ss_pred ccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
... +++.+||+++.|+ +.+...+.+.+
T Consensus 76 ---~~~--~vi~iSa~~~~gi-~~L~~~i~~~~ 102 (276)
T TIGR03596 76 ---KGI--KALAINAKKGKGV-KKIIKAAKKLL 102 (276)
T ss_pred ---cCC--eEEEEECCCcccH-HHHHHHHHHHH
Confidence 112 7899999999999 66666666554
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.5e-06 Score=63.26 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=38.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
....+++++|.+|+|||||+|++.+...... .....|....... . +..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK--L-DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE--e-cCCEEEEECCCC
Confidence 3568899999999999999999998763221 1222233333222 2 246899999993
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.5e-07 Score=75.86 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=102.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-------------------------------SLSHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 98 (224)
....+++++|...+||||+-.++....- .++..-..|++.....+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 4678999999999999998766653210 001122234455555666677
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCC---HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSK---LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---- 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---- 171 (224)
..+++.|.||+-.|-..+.....++|..++|+++...+- |+.--+.....+......-...|+++||+|-+..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 899999999999998877777889999999999865421 3322222222222222235679999999998653
Q ss_pred CCHHHHHhhcCcccc---cCcccceeEEEeecCCCCcccc
Q psy12173 172 LSAEEVGVALDLSSI---SSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 172 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
...++..+.+..... .....+..|+++|..+|.++.+
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~ 276 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKD 276 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhh
Confidence 334454444432211 0122234899999999999854
|
|
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.8e-07 Score=75.48 Aligned_cols=129 Identities=16% Similarity=0.066 Sum_probs=90.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC--------CCC----------CCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT--------SLS----------HNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~--------~~~----------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+..+|.++..-.+||||...|++...- ... .....|+..-...++|++..+.++||||+..
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 3567999999999999999999985321 110 0112233334456778999999999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---LSAEEVGVALDL 183 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~ 183 (224)
|+--...+++--|+++.|||.+.+-..+.+.-|. +....++|-+...||+|.... ...+.+++.++.
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwr-----qadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWR-----QADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeeh-----hccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 8877777888899999999999763333322222 222357899999999998654 334556666654
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.3e-06 Score=68.63 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=38.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
..++++++|.+|+|||||+|++.+.+......... |... ..+... ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeC-CCEEEEECCCc
Confidence 45789999999999999999999876443222221 2222 223232 36899999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.4e-06 Score=68.29 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=38.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
..++++++|.+|+|||||+|+|.+.+........ .|.+. ..+.. +..+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKL-GKGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEe-CCcEEEEECCCcC
Confidence 4579999999999999999999987743322211 12121 12222 3468999999953
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-06 Score=71.37 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=61.7
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCccccc
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSIS 187 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 187 (224)
.+++..+...+.+.++++++|+|+.+... .....+.... .+.|+++|+||+|+... ...+++.+.+.. ...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~-~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKK-RAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHH-HHH
Confidence 56788888888899999999999987642 1122222222 26799999999999654 333343332210 011
Q ss_pred Cccc-ceeEEEeecCCCCccccchHHHHHH
Q psy12173 188 SRQH-RIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 188 ~~~~-~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
.... ...++.+||++|.|+ +++...+.+
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv-~eL~~~l~~ 150 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGI-DELLDKIKK 150 (360)
T ss_pred HcCCCcCcEEEecCCCCCCH-HHHHHHHHH
Confidence 1111 015899999999999 555545543
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.3e-06 Score=67.40 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=60.8
Q ss_pred cCCchh-HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcc
Q psy12173 106 LGGQEN-VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLS 184 (224)
Q Consensus 106 ~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 184 (224)
-|||.. ........+..+|++++|+|+.++.+... ..+.... .++|+++|.||+|+.+....+++.+.++.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~- 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEE- 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence 356543 22344556899999999999987644322 2233332 26899999999999643212222222211
Q ss_pred cccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 185 SISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 185 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.. .+++.+||+++.|+ +.+...+.+.+
T Consensus 79 ----~~--~~vi~vSa~~~~gi-~~L~~~l~~~l 105 (287)
T PRK09563 79 ----QG--IKALAINAKKGQGV-KKILKAAKKLL 105 (287)
T ss_pred ----cC--CeEEEEECCCcccH-HHHHHHHHHHH
Confidence 11 27899999999999 56666665554
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.4e-06 Score=68.34 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=38.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~ 110 (224)
...++.++|.|++||||++|+|.+.+.... ...| |++.....+ -+..+.++||||..
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~P--G~Tk~~q~i~~~~~i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRP--GTTKGIQWIKLDDGIYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCC--ceecceEEEEcCCCeEEecCCCcC
Confidence 347899999999999999999999885321 2222 322222222 22348999999943
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.4e-06 Score=63.40 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc------eeEEEEEeCCeEEEEEEcCCchhH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG------FNITILQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~------~~~~~~~~~~~~~~l~D~~G~~~~ 112 (224)
-.++++|+.|+|||||+|.|....-..........+ .....+... ....++||||..++
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-CCcEEEECCCCCcc
Confidence 588999999999999999999875322111111111 112222232 24589999995543
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.3e-05 Score=55.32 Aligned_cols=111 Identities=20% Similarity=0.363 Sum_probs=62.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcC-C-------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELG-G------------------- 108 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~-G------------------- 108 (224)
..++|.+.|+||+||||++.++.+.--.. . ...-|+....+..++ .-|.++|+. |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~--g-~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK--G-YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc--C-ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 45799999999999999999888532111 0 111123333332222 445666655 2
Q ss_pred -----chh-HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 109 -----QEN-VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 109 -----~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
.++ ........++.+|++ ++|--.+ ++...+.+..........++|++.++.+.+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEE--EEecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 111 112334455667754 4565554 5555555555555443358898888887765
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.7e-05 Score=57.94 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-++++|..|+|||||++++....
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc
Confidence 46899999999999999998653
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=6e-06 Score=69.09 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC------ceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTE------GFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~------~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
.++++|.+|+|||||+|+|.+............. ......+...+ ...++||||..++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCccc
Confidence 4799999999999999999987643322221111 11111122221 13599999966543
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=6e-05 Score=62.42 Aligned_cols=138 Identities=12% Similarity=0.128 Sum_probs=75.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC--------CCCCCC-----------CCceeEEEE-----------------E
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSL--------SHNLKP-----------TEGFNITIL-----------------Q 95 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~--------~~~~~~-----------t~~~~~~~~-----------------~ 95 (224)
...++++|++|+||||++..+....... .+.+.. ..+...... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999998887532111 000000 001111110 0
Q ss_pred eCCeEEEEEEcCCchh--------HHHHHHh----hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEE
Q psy12173 96 KGEYTLNIFELGGQEN--------VRRFWNT----YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIA 163 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~--------~~~~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 163 (224)
..+..+.++||||... ....... .-..++..++|+|++.+ .....+ ...+... -.+--++.
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIl 266 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIIL 266 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEE
Confidence 1346899999999542 2221111 12357889999999965 233332 2333221 13457899
Q ss_pred eCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 164 NKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 164 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
||.|...... .-.+....+. |+..++ +|+++++
T Consensus 267 TKlD~t~~~G~~l~~~~~~~~----------Pi~~v~--~Gq~~~D 300 (318)
T PRK10416 267 TKLDGTAKGGVVFAIADELGI----------PIKFIG--VGEGIDD 300 (318)
T ss_pred ECCCCCCCccHHHHHHHHHCC----------CEEEEe--CCCChhh
Confidence 9999754421 2222233332 777877 7788743
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.3e-05 Score=64.28 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=52.1
Q ss_pred CeEEEEEEcCCchhHH----HHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 98 EYTLNIFELGGQENVR----RFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+..+.++||+|..... ..+... .-..|.+++|+|+..+...... ...+... -..--++.||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~---a~~f~~~----~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ---AREFNEA----VGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH---HHHHHhc----CCCCEEEEeeecCCCC
Confidence 4679999999965321 111111 2357899999999776432222 2222221 1234788999998654
Q ss_pred CCH-HHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 172 LSA-EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
... -.+....+. |+..++ +|+++++.
T Consensus 295 ~G~~ls~~~~~~~----------Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 295 GGAALSIAYVIGK----------PILFLG--VGQGYDDL 321 (336)
T ss_pred ccHHHHHHHHHCc----------CEEEEe--CCCChhhc
Confidence 221 112222222 777776 78888443
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.6e-05 Score=63.59 Aligned_cols=113 Identities=18% Similarity=0.186 Sum_probs=64.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc------CCCC-C-CCCCC-----------CCCceeEEEEE--e--------------
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS------GNTS-L-SHNLK-----------PTEGFNITILQ--K-------------- 96 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~------~~~~-~-~~~~~-----------~t~~~~~~~~~--~-------------- 96 (224)
...|+++|.+|+||||++..|.. .+.. . .+.+. ...+....... .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45789999999999999988862 1210 0 01111 01111111111 0
Q ss_pred -CCeEEEEEEcCCchhHHHH----HHh--hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 97 -GEYTLNIFELGGQENVRRF----WNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 97 -~~~~~~l~D~~G~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
.+.++.++||+|....... ... ....++-+++|+|+..+....+..+.+... -.+--+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence 2468999999995433221 111 123578899999988764443333333221 23567889999985
Q ss_pred CC
Q psy12173 170 GA 171 (224)
Q Consensus 170 ~~ 171 (224)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 44
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00023 Score=57.72 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=53.4
Q ss_pred CCeEEEEEEcCCchhHHHHH-------Hhhc-----cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q psy12173 97 GEYTLNIFELGGQENVRRFW-------NTYF-----EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIAN 164 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~-------~~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 164 (224)
++..+.++||||........ .... ..+|.+++|+|++.. .+.. .....+.+.. .+--++.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC----CCCEEEEE
Confidence 34789999999965322211 1111 248999999999854 3333 2333333221 24588999
Q ss_pred CCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 165 KQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 165 K~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|.|...... .-.+....+. |+..++ +|+++++
T Consensus 226 KlDe~~~~G~~l~~~~~~~~----------Pi~~~~--~Gq~~~d 258 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELKL----------PIKFIG--VGEKIDD 258 (272)
T ss_pred ccCCCCCccHHHHHHHHHCc----------CEEEEe--CCCChHh
Confidence 999866522 2222222222 777776 7777743
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=67.29 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-------CCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKP-------TEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-------t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
.++++|++|+|||||+|+|.+........... |+. ....+...+ ...++||||..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~-~~~l~~l~~-g~~liDTPG~~ 235 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTR-HVELFELPN-GGLLADTPGFN 235 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCc-eeEEEECCC-CcEEEeCCCcc
Confidence 48999999999999999999765332212111 221 222233321 13799999954
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00011 Score=61.97 Aligned_cols=120 Identities=9% Similarity=0.110 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC------CC----CCCCCC-----------CCceeEEEEE-----------eCCe
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT------SL----SHNLKP-----------TEGFNITILQ-----------KGEY 99 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~------~~----~~~~~~-----------t~~~~~~~~~-----------~~~~ 99 (224)
.-.++++|++|+||||++..|..... .. .+.+.. ..+....... +.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 45889999999999999999875321 00 001100 0011111111 1356
Q ss_pred EEEEEEcCCchhHH----HHHHh--hccCCCEEEEEEECCCC-CCHHHHHHHHHHHHhcCCCC-CCcEEEEEeCCCCCCC
Q psy12173 100 TLNIFELGGQENVR----RFWNT--YFEDTDLLVFVVDSADP-SKLPVAAMELKNLLGDQRLS-TVPILVIANKQDVPGA 171 (224)
Q Consensus 100 ~~~l~D~~G~~~~~----~~~~~--~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 171 (224)
.+.++||+|..... ..... ....+.-.++|++++.. +.+.+....+.......... ..+-=++.||.|....
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 89999999955322 22222 12334556889998875 22333333333332211100 0123567799998765
|
|
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=1e-05 Score=70.47 Aligned_cols=118 Identities=20% Similarity=0.135 Sum_probs=82.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-----CCCCCCC-------------CCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-----SLSHNLK-------------PTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-----~~~~~~~-------------~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+..+|.+.-.-.+||||+-.+.+...- ....... .|+..-...+.|++..+.++|||||..
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 3677899999999999999999885331 1111111 111222334667889999999999988
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
|---....++-.|+.++|++...+-. .+....+.+...+ ++|.|..+||.|.....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~ry----~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKRY----NVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHhc----CCCeEEEEehhhhcCCC
Confidence 76655566788899999999887622 2234445555444 79999999999987763
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.2e-05 Score=62.71 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=36.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC--------CCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLK--------PTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
...++++|.+|+|||||+|+|.+.......... .|.......+ .+ ..++||||...
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 357899999999999999999986532211111 1222233333 22 37999999654
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=69.93 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=68.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEe-CCeEEEEEEcCC----c----hhHHHHHHhh----
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQK-GEYTLNIFELGG----Q----ENVRRFWNTY---- 119 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~D~~G----~----~~~~~~~~~~---- 119 (224)
=.+|+|++|+||||++..--.+..... .......+.....+++ -...-.++||.| + +..+..|..+
T Consensus 127 Wy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred ceEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 368999999999999865443332110 1111122222333443 335678999998 2 1223334332
Q ss_pred -----ccCCCEEEEEEECCCCCCHHH---------HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 120 -----FEDTDLLVFVVDSADPSKLPV---------AAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 120 -----~~~~d~ii~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.+..|+||+.+|+.+.-+.+. +..-+.++...- .-..|+.+++||.|+...
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEeccccccc
Confidence 467899999999987433221 222344443321 147899999999999764
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.88 E-value=2e-05 Score=66.45 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC------CCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNT------SLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~------~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.++.++|.+|+|||||+|++..... ..+.....|.+. ..+.. +..+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~-~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPL-DDGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEe-CCCCEEEECCCCCC
Confidence 5899999999999999999998542 111111112222 22222 23467999999654
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00028 Score=54.37 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=59.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC----CC----CCCCCC-----------CCceeEEEEE-----------------eC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNT----SL----SHNLKP-----------TEGFNITILQ-----------------KG 97 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~----~~----~~~~~~-----------t~~~~~~~~~-----------------~~ 97 (224)
.++++|++|+||||.+-+|..... .. .+.+.. ..+....... .+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 689999999999999877764221 00 000000 0112222111 12
Q ss_pred CeEEEEEEcCCchhHH--------HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 98 EYTLNIFELGGQENVR--------RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
+.++.++||+|..... ..... ...+-+++|.+++... +... .+....... + +-=++.||.|..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~--~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~---~-~~~lIlTKlDet 153 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEA--LNPDEVHLVLSATMGQ--EDLE-QALAFYEAF---G-IDGLILTKLDET 153 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHH--HSSSEEEEEEEGGGGG--HHHH-HHHHHHHHS---S-TCEEEEESTTSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhh--cCCccceEEEecccCh--HHHH-HHHHHhhcc---c-CceEEEEeecCC
Confidence 3679999999943322 12222 2678899999999863 3333 233332221 2 225669999987
Q ss_pred CC
Q psy12173 170 GA 171 (224)
Q Consensus 170 ~~ 171 (224)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 65
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.5e-05 Score=62.38 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=36.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC------CceeEEEEEeCCeEEEEEEcCCchhH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT------EGFNITILQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t------~~~~~~~~~~~~~~~~l~D~~G~~~~ 112 (224)
..++++|++|+|||||+|.|.+...........+ +......+...+ ...++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence 6799999999999999999998664332111110 111112222221 2369999998765
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0012 Score=56.02 Aligned_cols=150 Identities=9% Similarity=0.104 Sum_probs=80.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC----CC----CCCCC-----------CCCceeEEEEEe--------------CC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT----SL----SHNLK-----------PTEGFNITILQK--------------GE 98 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~----~~----~~~~~-----------~t~~~~~~~~~~--------------~~ 98 (224)
...|+++|++|+||||++..|...-. .. .+.+. ...++....... .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 36899999999999999999863211 00 00000 011111111110 13
Q ss_pred eEEEEEEcCCchhHH----HHHHhhc--cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 99 YTLNIFELGGQENVR----RFWNTYF--EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..+.++||+|..... ......+ ...+.+++|+|++-. -......+..+.. -..-=+++||.|.....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k~ 393 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETASS 393 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCCc
Confidence 579999999953211 1111212 345778999988644 2333333434321 12236789999987652
Q ss_pred C-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 173 S-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 173 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
. .-.+....++ |+..++ +|.+|.+.+..+-.+.|.+
T Consensus 394 G~iLni~~~~~l----------PIsyit--~GQ~VPeDI~~A~~~~L~~ 430 (436)
T PRK11889 394 GELLKIPAVSSA----------PIVLMT--DGQDVKKNIHIATAEHLAK 430 (436)
T ss_pred cHHHHHHHHHCc----------CEEEEe--CCCCCCcchhhCCHHHHHH
Confidence 2 2222223322 555554 6888877766555444443
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00015 Score=56.57 Aligned_cols=62 Identities=31% Similarity=0.385 Sum_probs=40.3
Q ss_pred EEEEEEcC-CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCC-CcEEEEEeCCCCC
Q psy12173 100 TLNIFELG-GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLST-VPILVIANKQDVP 169 (224)
Q Consensus 100 ~~~l~D~~-G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piilv~nK~Dl~ 169 (224)
.+.++||- |.+.+.+ ...+++|.+|.|+|.+.. ++.. .+.+..+... -+ +++.+|+||.|..
T Consensus 135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~t-aeri~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRT-AERIKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHH-HHHHHHHHHH---hCCceEEEEEeeccch
Confidence 34555553 4444432 235789999999999875 3333 3445555554 35 8999999999975
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.6e-05 Score=61.38 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=35.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-------CCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-------TEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-------t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
...++++|++|+|||||+|.|.+........... |+ .....+...+ ...++||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT-~~~~~~~~~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTT-THVELYDLPG-GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCccc-ccEEEEEcCC-CcEEEECCCcCc
Confidence 4578999999999999999999765333211111 11 1112222222 247899999653
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=6.7e-05 Score=63.42 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=34.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC----C--CCCCCCCCCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT----S--LSHNLKPTEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~----~--~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
..++.++|.+|+|||||+|+|..... . .+.....|.+ ...+..++ ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCC-CcEEEECCCcc
Confidence 35799999999999999999986431 1 1111112222 22222222 24799999964
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00019 Score=60.68 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=55.5
Q ss_pred hhHHHHHHhhccCCC-EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCccccc
Q psy12173 110 ENVRRFWNTYFEDTD-LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSIS 187 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 187 (224)
+.+...... +...+ .+++|+|+.+... .....+..+. .+.|+++|+||+|+... ...+++.+..... ..
T Consensus 57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~-~k 127 (365)
T PRK13796 57 DDFLKLLNG-IGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQE-AK 127 (365)
T ss_pred HHHHHHHHh-hcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHH-HH
Confidence 345555544 44455 9999999988531 1222333322 26799999999999653 2233333222110 00
Q ss_pred Cccc-ceeEEEeecCCCCccccchHHHHHH
Q psy12173 188 SRQH-RIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 188 ~~~~-~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
.... ...++.+||++|.|+ +++...+.+
T Consensus 128 ~~g~~~~~v~~vSAk~g~gI-~eL~~~I~~ 156 (365)
T PRK13796 128 ELGLRPVDVVLISAQKGHGI-DELLEAIEK 156 (365)
T ss_pred hcCCCcCcEEEEECCCCCCH-HHHHHHHHH
Confidence 0111 015889999999999 555555544
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00018 Score=43.39 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=31.7
Q ss_pred ccCCCEEEEEEECCC--CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 120 FEDTDLLVFVVDSAD--PSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
-+-.++++|++|.+. +.+.++....+.++.... .++|+++|.||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 455789999999997 456788888888887763 4899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00069 Score=59.39 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=61.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC------CCC----CCCCC-----------CCCceeEEEEE-----------eCCe
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN------TSL----SHNLK-----------PTEGFNITILQ-----------KGEY 99 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~------~~~----~~~~~-----------~t~~~~~~~~~-----------~~~~ 99 (224)
.-.|+++|++|+||||++..|.... ... .+.+. ...++...... ..+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 4688999999999999998887421 000 00111 01112111111 1347
Q ss_pred EEEEEEcCCchhHHHH----HHh--hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 100 TLNIFELGGQENVRRF----WNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 100 ~~~l~D~~G~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
++.++||+|....... ... ... ....++|++.+.. ...+...+..+.. ..+.-+++||.|....
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETGR 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence 8999999995432211 110 111 2345777777653 4444444444322 2456799999998654
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00033 Score=59.07 Aligned_cols=83 Identities=14% Similarity=0.049 Sum_probs=51.7
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
..++|.+++|+++..+-....+..++..... .+++.++|+||+|+.++.. +........ .... +++.+|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~~-~~~~~~~~~----~~g~--~Vi~vS 178 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDAE-EKIAEVEAL----APGV--PVLAVS 178 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCHH-HHHHHHHHh----CCCC--cEEEEE
Confidence 5788999999999643333334444444333 4778899999999976511 112222211 1222 899999
Q ss_pred cCCCCccccchHHHH
Q psy12173 200 APSNLHHLHVSVVEA 214 (224)
Q Consensus 200 a~~~~gv~~~~~~~i 214 (224)
|++|.|+ +.+...+
T Consensus 179 a~~g~gl-~~L~~~L 192 (356)
T PRK01889 179 ALDGEGL-DVLAAWL 192 (356)
T ss_pred CCCCccH-HHHHHHh
Confidence 9999998 5444444
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00037 Score=51.29 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=34.6
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
+..+.++||+|..... ..++..+|-+++|....-. +...-.-...+ ..-=+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~---D~y~~~k~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAG---DDIQAIKAGIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCch---hHHHHhhhhHh------hhcCEEEEeCCC
Confidence 4678999998865332 2367889988888866622 11111111221 122388999988
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00078 Score=57.75 Aligned_cols=113 Identities=9% Similarity=0.073 Sum_probs=61.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-----CC-----CCCCCC-----------CCceeEEEE-----------EeCCe
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT-----SL-----SHNLKP-----------TEGFNITIL-----------QKGEY 99 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~-----~~-----~~~~~~-----------t~~~~~~~~-----------~~~~~ 99 (224)
.-.++++|++|+||||++..|..... .. .+.+.. -.+...... ...+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 45899999999999999998765310 00 000000 001111110 11346
Q ss_pred EEEEEEcCCchhH----HHHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 100 TLNIFELGGQENV----RRFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 100 ~~~l~D~~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.+.++||+|.... ......+ .....-.++|+|++.. ...+.+.+..+.. --.-=++.||.|....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAAS 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCCC
Confidence 7899999994432 2222222 1234567889998854 3334444433311 1233678899998765
|
|
| >KOG3859|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00021 Score=57.10 Aligned_cols=117 Identities=19% Similarity=0.236 Sum_probs=68.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCcee--EEEEEeCC--eEEEEEEcCCc-------hhHHH--
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS--HNLKPTEGFN--ITILQKGE--YTLNIFELGGQ-------ENVRR-- 114 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~-------~~~~~-- 114 (224)
-..++|+.+|.+|.|||||++.|.+-+|... +...|++... .+.++..+ .+++++||.|- ++|+.
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 3578999999999999999999998886541 1222333322 22222233 67899999981 11111
Q ss_pred -----HHHh-------------hc--cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 115 -----FWNT-------------YF--EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 115 -----~~~~-------------~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.+.. .+ ...+++++.+..+.- ++..+...-..-+ ..++.+|-++-|.|-...
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~L----dskVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKL----DSKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHH----hhhhhhHHHHHHhhhhhH
Confidence 1111 12 245778888877653 3433332211111 135667777888887654
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00086 Score=57.26 Aligned_cols=151 Identities=14% Similarity=0.151 Sum_probs=82.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-C----C----CCCCC-----------CCCceeEEEEE----------eCCeEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT-S----L----SHNLK-----------PTEGFNITILQ----------KGEYTL 101 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~-~----~----~~~~~-----------~t~~~~~~~~~----------~~~~~~ 101 (224)
...++++|++|+||||++.+|..... . . .+.+. ...+....... ..+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 34688999999999999999875220 0 0 00000 01111111110 035688
Q ss_pred EEEEcCCchh----HHHHHHhhcc-----CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 102 NIFELGGQEN----VRRFWNTYFE-----DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 102 ~l~D~~G~~~----~~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
.++||+|... ....+..+++ ...-.++|+|++.. .....+.+..+ .. --+-=++.||.|.....
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~~----~~~~glIlTKLDEt~~~ 375 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-ES----LNYRRILLTKLDEADFL 375 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-cC----CCCCEEEEEcccCCCCc
Confidence 9999999542 1111222221 23468899999886 33333333333 11 12346789999986552
Q ss_pred C-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 173 S-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 173 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
. .-.+....++ |+..++ .|.+|.+.+..+-.+.+.++
T Consensus 376 G~il~i~~~~~l----------PI~ylt--~GQ~VPeDi~~A~~~~l~~~ 413 (432)
T PRK12724 376 GSFLELADTYSK----------SFTYLS--VGQEVPFDILNATKNLMAEC 413 (432)
T ss_pred cHHHHHHHHHCC----------CEEEEe--cCCCCCCCHHHhhHHHHHHH
Confidence 2 1222222222 555554 68888877777766666543
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00088 Score=57.76 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=38.2
Q ss_pred CeEEEEEEcCCchhHH----HHHHhhcc---CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCC
Q psy12173 98 EYTLNIFELGGQENVR----RFWNTYFE---DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVP 169 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 169 (224)
+..+.++||+|..... ..+..++. ...-+.+|++.+-. ...+.+.+..+. ..+ --++.||.|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~------~~~~~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS------RLPLDGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC------CCCCCEEEEeccccc
Confidence 4689999999953221 12222222 33467788888754 333444444432 222 36889999986
Q ss_pred CC
Q psy12173 170 GA 171 (224)
Q Consensus 170 ~~ 171 (224)
..
T Consensus 371 ~~ 372 (424)
T PRK05703 371 SS 372 (424)
T ss_pred cc
Confidence 55
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0001 Score=59.80 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..+++|+.|+|||||+|+|....
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 77899999999999999999744
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0012 Score=55.75 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....++++|+.|+||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999988874
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0026 Score=54.07 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+=+.++||.-+|||||++||-..
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHH
Confidence 5677999999999999999999863
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=49.84 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=39.7
Q ss_pred CeEEEEEEcCCchhH----HHHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 98 EYTLNIFELGGQENV----RRFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+..+.++|++|.... -.....+ ....+.+++|+|..... ...+....+.... + ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 456899999997422 1111111 23589999999986542 2333444443321 2 35677799998664
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0021 Score=52.01 Aligned_cols=149 Identities=9% Similarity=0.093 Sum_probs=80.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC----C----CC-----------CCCCCCceeEEEEE--------------eCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTS----L----SH-----------NLKPTEGFNITILQ--------------KGE 98 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~----~----~~-----------~~~~t~~~~~~~~~--------------~~~ 98 (224)
.-+++++|++|+||||++..+...... . .+ .+....++...... ..+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 369999999999999998877643110 0 00 00111122222110 024
Q ss_pred eEEEEEEcCCchhHH----HHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 99 YTLNIFELGGQENVR----RFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..+.++||+|..... ..+... ....+-+++|+|++.. -.+..+.+..+.. -.+-=++.||.|.....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~~ 227 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETASS 227 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCCc
Confidence 689999999955211 111111 2245678999998754 2334444444321 12346789999987652
Q ss_pred C-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 173 S-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 173 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
. .-.+....+. |+..++ +|.++.+.+..+-.+.+.
T Consensus 228 G~~l~~~~~~~~----------Pi~~it--~Gq~vp~di~~a~~~~l~ 263 (270)
T PRK06731 228 GELLKIPAVSSA----------PIVLMT--DGQDVKKNIHIATAEHLA 263 (270)
T ss_pred cHHHHHHHHHCc----------CEEEEe--CCCCCCcchhhCCHHHHH
Confidence 2 1222222222 565654 688887666655444443
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0023 Score=55.23 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=62.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC----CCC----CCCCCCC-----------CceeEEEEE---------------e
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN----TSL----SHNLKPT-----------EGFNITILQ---------------K 96 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~----~~~----~~~~~~t-----------~~~~~~~~~---------------~ 96 (224)
....|+++|.+|+||||.+..+...- +.. .+.+.+. .+....... .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 35688999999999999987776311 110 0111110 111111100 0
Q ss_pred CCeEEEEEEcCCchhHHHHH------HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCC
Q psy12173 97 GEYTLNIFELGGQENVRRFW------NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTV-PILVIANKQDVP 169 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~ 169 (224)
.+..+.++||+|........ ......+|.+++|+|++... +..+....+.. .. ..-++.||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccCC
Confidence 13478999999955432211 11234688999999987752 22233333221 12 236778999975
Q ss_pred CC
Q psy12173 170 GA 171 (224)
Q Consensus 170 ~~ 171 (224)
..
T Consensus 246 a~ 247 (437)
T PRK00771 246 AK 247 (437)
T ss_pred Cc
Confidence 44
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0017 Score=53.85 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..-.++.|.-|||||||+++++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 345688899999999999999864
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0038 Score=51.84 Aligned_cols=136 Identities=22% Similarity=0.207 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-----------C--C--CCCCCCceeEEEE-------E---------------e
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSL-----------S--H--NLKPTEGFNITIL-------Q---------------K 96 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~-----------~--~--~~~~t~~~~~~~~-------~---------------~ 96 (224)
-.++.|.=||||||++++++.+..-. . + ......+.....+ + .
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 45788999999999999999765311 0 0 0111111111111 1 0
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhc--------cCCCEEEEEEECCCCCCHHH-HHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYF--------EDTDLLVFVVDSADPSKLPV-AAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
+.....++.+.|.-.-......+. -..|+++-|+|+.+...... ..+.+..=+.. .=+|++||.|
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~D 156 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTD 156 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEeccc
Confidence 124566777777544333322222 23488999999988533222 22222222222 2299999999
Q ss_pred CCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 168 VPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+.++...+.++..+... ...++++.+|.
T Consensus 157 lv~~~~l~~l~~~l~~l-----np~A~i~~~~~ 184 (323)
T COG0523 157 LVDAEELEALEARLRKL-----NPRARIIETSY 184 (323)
T ss_pred CCCHHHHHHHHHHHHHh-----CCCCeEEEccc
Confidence 98875444444444322 22237777766
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0017 Score=55.93 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=37.1
Q ss_pred CeEEEEEEcCCchhH----HHHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 98 EYTLNIFELGGQENV----RRFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+..+.++||+|.-.. ....... .-..+.+++|+|.... .+..+....+.... + ..-++.||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~-i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---G-LTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 367999999994321 1111111 2256788999998654 33334444443221 1 2356679999744
|
|
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00031 Score=60.39 Aligned_cols=128 Identities=19% Similarity=0.231 Sum_probs=82.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC------CCCC------CCCceeEEE--------------------EEeC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS------HNLK------PTEGFNITI--------------------LQKG 97 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~------~~~~------~t~~~~~~~--------------------~~~~ 97 (224)
.+..++-++.+...|||||...|..+.-... ..+. ..-+..++. -+.+
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 4567888899999999999999986542210 0000 000111111 1112
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC---CCCH
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG---ALSA 174 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~ 174 (224)
+.-++++|.||+..|.+-....++-.|+.++|+|.-++--. +.+..+.+.+.+ .+.-+++.||.|..- ..++
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQ 171 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHHh----hccceEEeehhhHHHHhhcCCH
Confidence 46799999999999999888889999999999998776222 223334444443 444588999999632 3455
Q ss_pred HHHHhhcC
Q psy12173 175 EEVGVALD 182 (224)
Q Consensus 175 ~~~~~~~~ 182 (224)
+++-+.++
T Consensus 172 EeLyqtf~ 179 (842)
T KOG0469|consen 172 EELYQTFQ 179 (842)
T ss_pred HHHHHHHH
Confidence 66555443
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0031 Score=53.32 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC--C-CCCCCCCc------------------eeEEEE-----------EeCCe
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSL--S-HNLKPTEG------------------FNITIL-----------QKGEY 99 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~--~-~~~~~t~~------------------~~~~~~-----------~~~~~ 99 (224)
...|+++||+|+||||-+-.|.....-. . ..-..|++ .+.... ...+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 6789999999999999887776544300 0 00001111 111111 11357
Q ss_pred EEEEEEcCCchhHH----HHHHhhcc--CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcE-EEEEeCCCCCCC
Q psy12173 100 TLNIFELGGQENVR----RFWNTYFE--DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPI-LVIANKQDVPGA 171 (224)
Q Consensus 100 ~~~l~D~~G~~~~~----~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~ 171 (224)
++.++||.|...+. ..+..++. ...-+.+|++++.. ...+...+..+. ..|+ =++.||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~------~~~i~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFS------LFPIDGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhc------cCCcceeEEEcccccCc
Confidence 89999999954322 22233332 23445667777765 444555555542 2222 466899998765
|
|
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00026 Score=60.93 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=38.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
.++|.+||-||+||||.||.|.+.+....+ +...|..|.... . ...+.+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~--l-s~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF--L-SPSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE--c-CCCceecCCCCc
Confidence 589999999999999999999998844321 222222222222 2 335789999994
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0025 Score=51.94 Aligned_cols=103 Identities=12% Similarity=0.146 Sum_probs=63.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchh-------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN------------------- 111 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~------------------- 111 (224)
....++++|++|.|||++++++...+.+. ..+. ....++..+.+|....
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~---~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~ 127 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQ---SDED---------AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR 127 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCC---CCCC---------CccccEEEEecCCCCChHHHHHHHHHHhCcccCCC
Confidence 45689999999999999999999877433 1111 0123556666664221
Q ss_pred -----HHHHHHhhccCCCEEEEEEECCC---CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q psy12173 112 -----VRRFWNTYFEDTDLLVFVVDSAD---PSKLPVAAMELKNLLGDQRLSTVPILVIANK 165 (224)
Q Consensus 112 -----~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 165 (224)
........++..++=++++|--+ ..+.......+..+....+.-++|+|.+|++
T Consensus 128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 12222345677788899998543 1233444444444433333368999999975
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0052 Score=56.35 Aligned_cols=115 Identities=12% Similarity=0.103 Sum_probs=61.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC----------CCCCCC-----------CCceeEEEE-----------EeCCeE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSL----------SHNLKP-----------TEGFNITIL-----------QKGEYT 100 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~----------~~~~~~-----------t~~~~~~~~-----------~~~~~~ 100 (224)
-.|+++|++|+||||.+..|....... .+.+.. ..+...... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 478999999999999999888533100 000000 001111100 113467
Q ss_pred EEEEEcCCch----hHHHHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 101 LNIFELGGQE----NVRRFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 101 ~~l~D~~G~~----~~~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+.++||+|.. ......... ....+-+++|+|.+.. .+.+.+.+..+.... .-.+-=+++||.|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~--~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGA--GEDVDGCIITKLDEATH 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcc--cCCCCEEEEeccCCCCC
Confidence 9999999932 222222221 2345678899998854 333333333332110 00123577999998765
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=54.92 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..++++|++|+||||.+..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4789999999999999998885
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=41.90 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=57.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH-HHhhccCCCEEEEEEECC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF-WNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~ii~v~d~~ 133 (224)
+++.|.+|+|||++...+...--. .+.....+. .+.++|+++....... .......+|.++++++..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~--------~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~ 69 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK--------RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPE 69 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCc
Confidence 678899999999998888754311 111222222 7899999986544431 133466889999998877
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIAN 164 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 164 (224)
.. +....................+..++.|
T Consensus 70 ~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 70 AL-AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 65 3444433332222222223455555544
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.012 Score=50.12 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=62.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--------CC----CCCC-----------CCCCceeEEEEE-----------eC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT--------SL----SHNL-----------KPTEGFNITILQ-----------KG 97 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~--------~~----~~~~-----------~~t~~~~~~~~~-----------~~ 97 (224)
...|+++|++|+||||.+..+..... .. .+.+ ....+....... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45889999999999999988864211 00 0000 001122221111 13
Q ss_pred CeEEEEEEcCCchhHH----HHHHhhcc---CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 98 EYTLNIFELGGQENVR----RFWNTYFE---DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+..+.++||+|..... ......+. ...-+++|+|++.. ...+.+.+..+.. -.+-=++.||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 5789999999943211 11111222 22358899999886 4444444444421 123467899999866
Q ss_pred C
Q psy12173 171 A 171 (224)
Q Consensus 171 ~ 171 (224)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 5
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=49.66 Aligned_cols=54 Identities=15% Similarity=0.345 Sum_probs=35.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
...-+.++|..|||||||++++...-.. .++....+.+....+.+ |.+|.+.++
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~--------~g~~vg~Ik~~~~~~~~-d~~g~Ds~~ 58 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA--------RGIRPGLIKHTHHDMDV-DKPGKDSYE 58 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh--------cCCeEEEEEEcCCCccc-CCCCcHHHH
Confidence 3457899999999999999999965311 12333444444444444 778876655
|
|
| >KOG1534|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0013 Score=50.59 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=47.6
Q ss_pred eEEEEEEcCCchhHHH------HHHhhccCC---CEEEEEEECCCC-CC---HHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q psy12173 99 YTLNIFELGGQENVRR------FWNTYFEDT---DLLVFVVDSADP-SK---LPVAAMELKNLLGDQRLSTVPILVIANK 165 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~------~~~~~~~~~---d~ii~v~d~~~~-~s---~~~~~~~~~~~~~~~~~~~~piilv~nK 165 (224)
-.+-++|.|||.+... ....++++. -++++++|..-. ++ +......+..... -.+|-|=|.+|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 4688999999765322 112223332 246666665531 11 2222222333333 36888999999
Q ss_pred CCCCCCCCHHHHHhhcCcc
Q psy12173 166 QDVPGALSAEEVGVALDLS 184 (224)
Q Consensus 166 ~Dl~~~~~~~~~~~~~~~~ 184 (224)
.|+..+...++++..++..
T Consensus 174 MDLlk~~~k~~l~~Fl~~d 192 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFLNPD 192 (273)
T ss_pred HHHhhhhhHHHHHHhcCCc
Confidence 9998887777777666643
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00051 Score=42.42 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..++.|+.|+||||++.++..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.01 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++.|.-|+|||||+++++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 35688899999999999999864
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00046 Score=48.59 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|++.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999975
|
... |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0072 Score=43.15 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...+++.|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998764
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=55.43 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=38.1
Q ss_pred CeEEEEEEcCCchhH----HHHHHh--hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 98 EYTLNIFELGGQENV----RRFWNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~----~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+..+.++||+|.... ...... ..-.++.+++|+|+... .+..+....+.... + ..=++.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 367999999994322 111111 12357889999998754 33444444443221 2 2356699999644
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00063 Score=51.08 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.+|+|+|++|||||||.+.|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998653
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00061 Score=51.36 Aligned_cols=23 Identities=48% Similarity=0.674 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.+|+++|++|||||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0006 Score=49.39 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
|+++|++||||||+++++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999843
|
... |
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00071 Score=56.59 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=40.2
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
....+++.|+|-|++||||++|+|...+.... ...|++......+. -+..+.+.|.||.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~-Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVK-LDKKIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhhee-ccCCceeccCCce
Confidence 35689999999999999999999998885331 11222221111121 3467899999994
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.005 Score=45.39 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-+++.|++|+|||+++.++...-
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999988643
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0062 Score=48.22 Aligned_cols=95 Identities=16% Similarity=0.246 Sum_probs=51.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc--hhHHHHHHhhccCCCEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ--ENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~~~~~~~~~d~ii 127 (224)
.+..++++.|+.|+||||+++.+....... + ++++.++.. .....+....-....-+|
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~------------------G--LRlIev~k~~L~~l~~l~~~l~~~~~kFI 109 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQ------------------G--LRLIEVSKEDLGDLPELLDLLRDRPYKFI 109 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhc------------------C--ceEEEECHHHhccHHHHHHHHhcCCCCEE
Confidence 356799999999999999999999765332 1 444544431 222233222222334455
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEe
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIAN 164 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~n 164 (224)
+.+|--.-+..+.....+..++...- ....-+++.+|
T Consensus 110 lf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 110 LFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred EEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 55553333344444455666655422 12233566554
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00079 Score=51.07 Aligned_cols=24 Identities=46% Similarity=0.617 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
++|+++|+||+||||+.++|....
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999873
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.007 Score=49.33 Aligned_cols=84 Identities=13% Similarity=0.023 Sum_probs=55.4
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH--HHhhcCcccccCcccceeEEE
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE--VGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 197 (224)
..+.|-.++|+.+.+|+--......+.-+... .++..++++||+|+.++..... ....+. ...+ +.+.
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~-----~~gy--~v~~ 146 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYE-----DIGY--PVLF 146 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHH-----hCCe--eEEE
Confidence 44577888888999887655554444444443 5787888999999988744442 222222 1222 8999
Q ss_pred eecCCCCccccchHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEA 214 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i 214 (224)
+|++++.|+ +++...+
T Consensus 147 ~s~~~~~~~-~~l~~~l 162 (301)
T COG1162 147 VSAKNGDGL-EELAELL 162 (301)
T ss_pred ecCcCcccH-HHHHHHh
Confidence 999999998 5544443
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.001 Score=47.86 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3478999999999999999999865
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0023 Score=52.03 Aligned_cols=59 Identities=15% Similarity=0.309 Sum_probs=36.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCcee--EE-EEEe-CCeEEEEEEcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS--HNLKPTEGFN--IT-ILQK-GEYTLNIFELGG 108 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--~~~~~t~~~~--~~-~~~~-~~~~~~l~D~~G 108 (224)
...+.+.|+|-||+|||||+|.+...+.... ......-|.+ .. .+.+ ....+-+.||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 3578999999999999999998875442220 0111111111 11 1222 445688999999
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.011 Score=48.65 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=79.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC----CCC------------------------CCCCCCCCceeEEEEEe------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN----TSL------------------------SHNLKPTEGFNITILQK------ 96 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~----~~~------------------------~~~~~~t~~~~~~~~~~------ 96 (224)
...-|+++|-+|+||||-+-.|.... +.. ........+-+...+-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 46789999999999999877776422 111 00000001111111111
Q ss_pred --CCeEEEEEEcCCchhHHHHH-------Hhhcc-----CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEE
Q psy12173 97 --GEYTLNIFELGGQENVRRFW-------NTYFE-----DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVI 162 (224)
Q Consensus 97 --~~~~~~l~D~~G~~~~~~~~-------~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 162 (224)
++..+.++||.|.-.....+ ..... ..+-+++++|++-+..--+..+.+.+.... -=++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~GiI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGII 290 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceEE
Confidence 35889999999943222111 11122 334589999999885555555555555432 1467
Q ss_pred EeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 163 ANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 163 ~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+||.|-... =..-.+...+++ |+..+- -|+++++.-.....+.+.
T Consensus 291 lTKlDgtAKGG~il~I~~~l~~----------PI~fiG--vGE~~~DL~~Fd~~~fv~ 336 (340)
T COG0552 291 LTKLDGTAKGGIILSIAYELGI----------PIKFIG--VGEGYDDLRPFDAEWFVD 336 (340)
T ss_pred EEecccCCCcceeeeHHHHhCC----------CEEEEe--CCCChhhccccCHHHHHH
Confidence 899995432 112234444443 555553 456665444434444333
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0014 Score=41.57 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999875
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00089 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
||+++|.+++|||||++.|....
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~g 23 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAARG 23 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHcC
Confidence 69999999999999999999763
|
|
| >KOG0780|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0042 Score=52.04 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=59.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CCCCC-----------CCcee-EE----------------EE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS--------HNLKP-----------TEGFN-IT----------------IL 94 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--------~~~~~-----------t~~~~-~~----------------~~ 94 (224)
..--|.++|-.|+||||.+-.+........ ++... ..+.. +. .+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 455789999999999999887765331110 00000 00111 11 11
Q ss_pred EeCCeEEEEEEcCCchhHHH-HHHh-----hccCCCEEEEEEECCCCCCHHHHHHHHHHHH
Q psy12173 95 QKGEYTLNIFELGGQENVRR-FWNT-----YFEDTDLLVFVVDSADPSKLPVAAMELKNLL 149 (224)
Q Consensus 95 ~~~~~~~~l~D~~G~~~~~~-~~~~-----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~ 149 (224)
..++..+.|+||.|...... +... -.-..|-+|+|.|++-+.........+.+..
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 12357899999999554332 1111 1235799999999999887777766666643
|
|
| >KOG0446|consensus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0011 Score=59.93 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=76.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------------CCC------C----CC-----------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSH---------------NLK------P----TE----------------- 87 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~---------------~~~------~----t~----------------- 87 (224)
...+.|+++|..++||||.+..+.+..|.+.. ... . ..
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 45689999999999999999999996654310 000 0 00
Q ss_pred ---------c-----eeEEEEEeCCeEEEEEEcCCc-------------hhHHHHHHhhccCCCEEEEEEECCCCCCHHH
Q psy12173 88 ---------G-----FNITILQKGEYTLNIFELGGQ-------------ENVRRFWNTYFEDTDLLVFVVDSADPSKLPV 140 (224)
Q Consensus 88 ---------~-----~~~~~~~~~~~~~~l~D~~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~ 140 (224)
+ .+.....-.-.+++++|+||. ...+.+...++...+.+|+.+...+- +-
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~---d~ 183 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANS---DI 183 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhh---hh
Confidence 0 000001112256889999993 24566778888999999999988773 22
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 141 AAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 141 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.......+.+..+..+...+-|.+|.|+.++
T Consensus 184 ats~alkiarevDp~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFMDK 214 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhhhc
Confidence 2223334445555567788888888887654
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.005 Score=44.65 Aligned_cols=106 Identities=17% Similarity=0.259 Sum_probs=60.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC
Q psy12173 56 LILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 56 ~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
+.-|.+|+|||++.-.+...-.... ....-..+.....+ +..+.++|+|+..... ....+..+|.++++.+.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---~yd~VIiD~p~~~~~~--~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---DYDYIIIDTGAGISDN--VLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---CCCEEEEECCCCCCHH--HHHHHHhCCeEEEEcCCCh
Confidence 3457889999998665553210000 00000000000000 1678999999754322 2346788999999998865
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 135 PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 135 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
. ++......+..+.... ...++.++.|+++..
T Consensus 79 ~-s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 T-SITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred h-HHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 4 4554444454443322 356788999999743
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0018 Score=48.13 Aligned_cols=51 Identities=22% Similarity=0.499 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
.+.++|.+|+|||||+.++...- ...+.....+......+.+ |.+|.+.++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l--------~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPAL--------SARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--------HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 68899999999999999999642 1223334455554444443 788876665
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.016 Score=39.45 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=48.3
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 55 ILILG-LDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 55 i~v~G-~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
|++.| .+|+||||+...+...--.. +.....++. ....+.++|+|+....... ..+..+|.++++++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~--------~~~vl~~d~d~~~d~viiD~p~~~~~~~~--~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR--------GKRVLLIDLDPQYDYIIIDTPPSLGLLTR--NALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC--------CCcEEEEeCCCCCCEEEEeCcCCCCHHHH--HHHHHCCEEEEeccC
Confidence 45666 66899999877666432111 111111111 1167899999986644332 456779999999977
Q ss_pred CCCCCHHHHHHHHH
Q psy12173 133 ADPSKLPVAAMELK 146 (224)
Q Consensus 133 ~~~~s~~~~~~~~~ 146 (224)
+.. ++....+.+.
T Consensus 72 ~~~-s~~~~~~~~~ 84 (104)
T cd02042 72 SPL-DLDGLEKLLE 84 (104)
T ss_pred CHH-HHHHHHHHHH
Confidence 653 4555544444
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0016 Score=48.96 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+|++.|++|+||||+++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998854
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0017 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..+|+++|+|||||||+.+.|....
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999997543
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0018 Score=50.31 Aligned_cols=26 Identities=31% Similarity=0.174 Sum_probs=22.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+...-|+++|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999864
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0016 Score=52.12 Aligned_cols=24 Identities=42% Similarity=0.409 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
--++++|++|||||||++.+.+--
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999999733
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.002 Score=45.69 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSL 79 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~ 79 (224)
..++++|++|+|||+++..+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 478999999999999999999766443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0025 Score=46.17 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
|+++|++|||||||++.+....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6899999999999999999753
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0031 Score=47.58 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=32.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHH--HhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhh
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNL--LGDQRLSTVPILVIANKQDVPGALSAEEVGVA 180 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 180 (224)
|++++|+|+.++.+-. ...+... ... .++|+++|+||+|+.+.....++.+.
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~~~l~~~~~~ 54 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVLQAG---GNKKLVLVLNKIDLVPKENVEKWLKY 54 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHHhcc---CCCCEEEEEehhhcCCHHHHHHHHHH
Confidence 7899999998863221 1222222 222 36899999999999654333333333
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0017 Score=51.24 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
-|.++|++|||||||++-+.+-..+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999986533
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.019 Score=48.92 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=57.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc----CCCCC----CCCCCC-----------CCceeEEEEE-------e-------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS----GNTSL----SHNLKP-----------TEGFNITILQ-------K------- 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~----~~~~~----~~~~~~-----------t~~~~~~~~~-------~------- 96 (224)
.....|+++|--|+||||..-.|.. ....+ .+.+.| .++..++... .
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4567899999999999998665553 11111 011111 0111111111 1
Q ss_pred ---CCeEEEEEEcCCchhHHHHH------HhhccCCCEEEEEEECCCCCCHHHHHHHHHHH
Q psy12173 97 ---GEYTLNIFELGGQENVRRFW------NTYFEDTDLLVFVVDSADPSKLPVAAMELKNL 148 (224)
Q Consensus 97 ---~~~~~~l~D~~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 148 (224)
...++.++||.|.......+ ....-++|-+++|+|+.-+....+..+.+.+-
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~ 238 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEA 238 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhh
Confidence 23689999999955443322 11234678999999999886655555555554
|
|
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0043 Score=53.66 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=57.1
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSR 189 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 189 (224)
+-++++|.- ++.+|+|+.++|+.++--|.. .-+..+.+... ..+..++++||+||........+.+.+...++
T Consensus 163 E~WRQLWRV-lErSDivvqIVDARnPllfr~--~dLe~Yvke~d-~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni--- 235 (562)
T KOG1424|consen 163 EIWRQLWRV-LERSDIVVQIVDARNPLLFRS--PDLEDYVKEVD-PSKANVLLVNKADLLPPEQRVAWAEYFRQNNI--- 235 (562)
T ss_pred HHHHHHHHH-HhhcceEEEEeecCCccccCC--hhHHHHHhccc-cccceEEEEehhhcCCHHHHHHHHHHHHhcCc---
Confidence 445666664 789999999999999843332 22333333322 45788999999999888666777776654433
Q ss_pred ccceeEEEeecCC
Q psy12173 190 QHRIKLIATQAPS 202 (224)
Q Consensus 190 ~~~~~~~~~Sa~~ 202 (224)
+++.-||..
T Consensus 236 ----~~vf~SA~~ 244 (562)
T KOG1424|consen 236 ----PVVFFSALA 244 (562)
T ss_pred ----eEEEEeccc
Confidence 888888886
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0026 Score=49.25 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=.++++|+.|||||||++.+..-.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc
Confidence 3478999999999999999999866
|
|
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0037 Score=48.56 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...-|+++|++|||||||+++|....
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 45678889999999999999997543
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.002 Score=45.70 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999999753
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.022 Score=39.25 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=55.7
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC
Q psy12173 58 LGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 58 ~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
=+.+|+||||+...|...-... . +....-++. ....+.++|+|+...... ...+..+|.++++.+.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~--~-----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~~--~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKE--A-----GRRVLLVDLDLQFGDDYVVVDLGRSLDEVS--LAALDQADRVFLVTQQDL 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhc--C-----CCcEEEEECCCCCCCCEEEEeCCCCcCHHH--HHHHHHcCeEEEEecCCh
Confidence 3567899999877665422111 0 001111110 112799999998665432 335678999999987665
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q psy12173 135 PSKLPVAAMELKNLLGDQRLSTVPILVIANK 165 (224)
Q Consensus 135 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 165 (224)
. +.......+..+..........+.+++|+
T Consensus 77 ~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 P-SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred H-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4 55555555555544322114567788775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0021 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.+|+++|.+||||||+.++|....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998653
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0023 Score=48.31 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-|++.|.+|||||||.++|...-
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678899999999999999998643
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0021 Score=45.44 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
|++.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
|
... |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0023 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+|+++|.+||||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999865
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0032 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-+++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 489999999999999999999755
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0023 Score=50.22 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
=-++++|+.|||||||++-+-+-.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 367999999999999999998755
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0065 Score=47.60 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
....+++.|++|+|||+++..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999988643
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0026 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.++++|++|||||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997654
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0065 Score=45.39 Aligned_cols=25 Identities=40% Similarity=0.384 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=.+++.|+.|||||+|++.+..--
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3467999999999999999998754
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0082 Score=47.58 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+.+.|++|+|||+|+..+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998754
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0028 Score=48.01 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..-.++++|++|+|||||++.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 445889999999999999998863
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0038 Score=54.90 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...+++.|++|+||||+++.+....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999998653
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0026 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
--++++||+|+|||||++.+++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4679999999999999999998
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0026 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998764
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.086 Score=39.41 Aligned_cols=66 Identities=14% Similarity=-0.066 Sum_probs=43.6
Q ss_pred EEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 100 TLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 100 ~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.+.++|+|+...... ...+..+|.+|++++.+.. ++......+..+... ......++.|+.|....
T Consensus 64 d~viiD~p~~~~~~~--~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERGF--ITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence 799999998654332 2346789999999987764 455555544444332 23457789999987644
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0047 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-|+++|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 458999999999999999998764
|
|
| >KOG4273|consensus | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0089 Score=47.28 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=67.3
Q ss_pred ccEEEEEcCCCC--CHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNS--GKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~s--GKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+-++++|-.|+ ||-+++.+|....|..+......+.+.-..+..+- -.+.+.-.+-.+++.-......+...+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 346789999998 99999999999888763333333332222221110 11222222222222211122245567899
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCCCC
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTV-PILVIANKQDVPGA 171 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~ 171 (224)
.|||.+....+..+..|+...-- ... .++.++||.|....
T Consensus 84 mvfdlse~s~l~alqdwl~htdi----nsfdillcignkvdrvph 124 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDI----NSFDILLCIGNKVDRVPH 124 (418)
T ss_pred EEEeccchhhhHHHHhhcccccc----ccchhheecccccccccc
Confidence 99999999888877766554311 233 34667899998543
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0031 Score=45.51 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988853
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0017 Score=54.47 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG 108 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G 108 (224)
.....+.|.++|-|++||||++|.|..++... ..+..-.....++-.--..+-++|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCk--vAPIpGETKVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCK--VAPIPGETKVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhccccc--ccCCCCcchHHHHHHHHhceeEecCCC
|
|
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0029 Score=48.23 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
+|+++|+|||||||+..+|....
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998644
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0033 Score=47.72 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999984
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0033 Score=49.11 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999999865
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0033 Score=48.00 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++||||||+++.+.+.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3489999999999999999998754
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0032 Score=47.59 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.|+++|++||||||+++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999999854
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0036 Score=48.61 Aligned_cols=25 Identities=32% Similarity=0.216 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|++.|++|||||||.+.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0029 Score=48.72 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
|++.|++|||||||.+.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0037 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999999865
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.012 Score=47.48 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
--|++.|++||||||+++.+...-
T Consensus 81 GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhh
Confidence 368999999999999999987643
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0037 Score=48.77 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999865
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0046 Score=46.87 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34478999999999999999999865
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0036 Score=45.58 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|.++|+.+||||||+..|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0039 Score=47.61 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||||++.+.+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.004 Score=48.39 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.004 Score=48.14 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||||++.+.+..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999865
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0039 Score=43.04 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q psy12173 53 RKILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~ 73 (224)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999986
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.004 Score=48.46 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.004 Score=49.26 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|+|||||++.+.+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999999865
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.03 Score=43.26 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-|.+.|.|||||||+.+.|..
T Consensus 3 LiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred eEEEecCCCCCchHHHHHHHH
Confidence 478899999999999887764
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0036 Score=52.06 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
-++++||+||||||+++.+.+-.-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998663
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0041 Score=46.95 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+|+++|.+||||||+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998654
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0042 Score=46.70 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+|+++|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988754
|
|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0042 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.+|+++|+|||||||+.+++....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0037 Score=48.56 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.++++|++|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999864
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 224 | ||||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 1e-30 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 2e-30 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 1e-29 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 2e-29 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 5e-28 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 6e-28 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 6e-28 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 3e-27 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 6e-27 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 8e-27 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 1e-23 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-23 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 3e-23 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 6e-23 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 7e-22 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 7e-22 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 8e-22 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 8e-22 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 9e-22 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 1e-21 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 1e-21 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 1e-21 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 1e-21 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 1e-21 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 1e-21 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 1e-21 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 1e-21 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 1e-21 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 2e-21 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 2e-21 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 3e-21 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 4e-21 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 5e-21 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 7e-21 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 7e-21 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 1e-20 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 1e-20 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-20 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 1e-20 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 1e-20 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-20 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 2e-20 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 2e-20 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 3e-20 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 1e-19 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 2e-19 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 9e-19 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 1e-18 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 1e-16 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 3e-16 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 1e-15 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 1e-15 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 3e-15 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 2e-05 | ||
| 3sn6_A | 380 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-04 | ||
| 1cul_C | 380 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 2e-04 | ||
| 1cjk_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 2e-04 | ||
| 3t5g_A | 181 | Structure Of Fully Modified Farnesylated Rheb In Co | 2e-04 | ||
| 1cs4_C | 394 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 2e-04 | ||
| 1azs_C | 402 | Complex Of Gs-Alpha With The Catalytic Domains Of M | 2e-04 | ||
| 2l0x_A | 169 | Solution Structure Of The 21 Kda Gtpase Rheb Bound | 2e-04 | ||
| 1xtq_A | 177 | Structure Of Small Gtpase Human Rheb In Complex Wit | 2e-04 | ||
| 3sea_A | 167 | Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo | 7e-04 |
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380 | Back alignment and structure |
|
| >pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380 | Back alignment and structure |
|
| >pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402 | Back alignment and structure |
|
| >pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181 | Back alignment and structure |
|
| >pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394 | Back alignment and structure |
|
| >pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402 | Back alignment and structure |
|
| >pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169 | Back alignment and structure |
|
| >pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177 | Back alignment and structure |
|
| >pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 6e-55
Identities = 45/142 (31%), Positives = 85/142 (59%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +ILILGLD +GK+T++ ++ G PT GFN+ + +++LGG +
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVGEVV---TTIPTIGFNVETVTYKNLKFQVWDLGGLTS 63
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W Y+ +TD +++VVDS D ++ ++ EL +L ++ L ++V ANKQD+ A
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
+++ E+ +L L ++ R+ +I
Sbjct: 124 MTSSEMANSLGLPALKDRKWQI 145
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 1e-54
Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ ++L+LGLDN+GK++++ ++ G+ PT G N+ LQ + +++LGGQ
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVV---TTVPTVGVNLETLQYKNISFEVWDLGGQTG 78
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
VR +W YF DTD +++VVDS D ++ VA EL LL + L +L+ ANKQD+P A
Sbjct: 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
S E+ L +SSI +R I
Sbjct: 139 ASEAEIAEQLGVSSIMNRTWTI 160
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 1e-54
Identities = 62/142 (43%), Positives = 99/142 (69%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +IL+LGLDN+GK+TL+KQ++S + S ++ PT+GFNI +Q + LN++++GGQ
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKSVQSQGFKLNVWDIGGQRK 72
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W +YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
A E+ L+L +I R +I
Sbjct: 133 APASEIAEGLNLHTIRDRVWQI 154
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 2e-54
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
K+L LGLDN+GK+TL+ + + + L+PT L G F+LGG R
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
R W YF + + +VF+VD+ADP + A +EL L L VP +++ NK D P A+S
Sbjct: 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 141
Query: 174 AEEVGVALDLSSISSRQHRIK 194
E+ AL L + + Q
Sbjct: 142 EAELRSALGLLNTTGSQRIEG 162
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 3e-54
Identities = 50/142 (35%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ ++ ++GL SGK+T + I+SG + + PT GFN+ + KG T+ ++++GGQ
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNED--MIPTVGFNMRKITKGNVTIKLWDIGGQPR 79
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
R W Y +V++VD+AD K+ + EL NLL +L +P+LV+ NK+D+PGA
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
L +E+ ++LS+I R+
Sbjct: 140 LDEKELIEKMNLSAIQDREICC 161
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 3e-54
Identities = 62/142 (43%), Positives = 97/142 (68%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ ++L+LGLDN+GK+T++K+ + + + PT GFNI L+ + LNI+++GGQ++
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRGFKLNIWDVGGQKS 74
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W YFE TD L++VVDSAD ++ EL++LL ++RL+ +L+ ANKQD+PGA
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
LS + AL+L SI S RI
Sbjct: 135 LSCNAIQEALELDSIRSHHWRI 156
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 4e-54
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G PT GFN+ ++ + ++++GGQ+ +R
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 58
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W YF++T L+FVVDS D ++ A EL +L + L +LV ANKQD+P A++
Sbjct: 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118
Query: 174 AEEVGVALDLSSISSRQHRI 193
A E+ L L S+ R I
Sbjct: 119 AAEITDKLGLHSLRHRNWYI 138
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 6e-54
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +L LGLDNSGK+T+I ++ N + L PT GF+I + + +F++ GQ
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRL--STVPILVIANKQDVP 169
R W Y+++ ++FV+DS+D ++ VA EL LL + +PIL ANK D+
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 170 GALSAEEVGVALDLSSISSRQHRI 193
A+++ +V L L +I + I
Sbjct: 140 DAVTSVKVSQLLCLENIKDKPWHI 163
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 7e-54
Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 45 SKVDDIFQRK---ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTL 101
+++ +F + ++I+GLDN+GK+T++ Q S + PT G N+ +
Sbjct: 6 TRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRF 62
Query: 102 NIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILV 161
++++GGQE++R WNTY+ +T+ ++ VVDS D ++ V EL +L + L +L+
Sbjct: 63 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 122
Query: 162 IANKQDVPGALSAEEVGVALDLSSISSRQHRI 193
ANKQDV ++ E+ L L+SI Q I
Sbjct: 123 FANKQDVKECMTVAEISQFLKLTSIKDHQWHI 154
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 8e-54
Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ K++I+GLDN+GK+T++ Q S + PT G N+ + ++++GGQE+
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R WNTY+ +T+ ++ VVDS D ++ V EL +L + L +L+ ANKQDV
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
++ E+ L L+SI Q I
Sbjct: 138 MTVAEISQFLKLTSIKDHQWHI 159
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 5e-53
Identities = 59/142 (41%), Positives = 86/142 (60%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ +ILILGLD +GK+T++ ++ G KPT GFN+ L LN+++LGGQ +
Sbjct: 18 ELRILILGLDGAGKTTILYRLQIGEVV---TTKPTIGFNVETLSYKNLKLNVWDLGGQTS 74
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R +W Y+ DT ++FVVDS D ++ A+ EL +L ++ L +LV ANKQD PGA
Sbjct: 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
LSA EV L+L + R I
Sbjct: 135 LSASEVSKELNLVELKDRSWSI 156
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 7e-53
Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
Q +IL++GLD +GK+T++ ++ G PT GFN+ ++ ++++GGQ+
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIGFNVETVEYKNICFTVWDVGGQDK 85
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R W YF++T L+FVVDS D ++ +A EL+ +L + L +LV ANKQD+P A
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145
Query: 172 LSAEEVGVALDLSSISSRQHRI 193
+ E+ L L + SR +
Sbjct: 146 MPVSELTDKLGLQHLRSRTWYV 167
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 9e-53
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
K++ LGLDN+GK+TL+ + PT L T F+LGG R
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMTFTTFDLGGHIQAR 83
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
R W Y + +VF+VD AD +L + EL +L+ D+ ++ VPIL++ NK D P A+S
Sbjct: 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS 143
Query: 174 AEEVGVALDLSSISSRQHRIKL 195
E + L ++ + + L
Sbjct: 144 EERLREMFGLYGQTTGKGSVSL 165
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 6e-45
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
Query: 28 WKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTE 87
W + + +IL++GLD +GK+T++ ++ G PT
Sbjct: 142 WSLESSPAQNWTPPQPRGLFGK-KEMRILMVGLDAAGKTTILYKLKLGEIV---TTIPTI 197
Query: 88 GFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKN 147
GFN+ ++ + ++++GGQ+ +R W YF++T L+FVVDS D ++ A EL
Sbjct: 198 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 257
Query: 148 LLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRI 193
+L + L +LV ANKQD+P A++A E+ L L S+ R I
Sbjct: 258 MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 303
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 2e-39
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN---ITILQKGEYTLNIFELGG 108
QR +L +GL +SGK+ L ++ +G + + + + +L + +L G
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDLPG 63
Query: 109 QENVR-RFWNTYFEDTDLLVFVVDSAD-PSKLPVAAMELKNLLGDQRLS--TVPILVIAN 164
E++R + + + +VFVVDSA ++ A L +L D + +L+ N
Sbjct: 64 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123
Query: 165 KQDVPGALSAEEVGVALDLSSISSRQHRIK 194
KQD+ A SA+ + L+ + R R
Sbjct: 124 KQDIAMAKSAKLIQQQLEKELNTLRVTRSA 153
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 4e-36
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 19/150 (12%)
Query: 54 KILILGLDNSGKSTLIKQISSGNT--------SLSHNLKPTEGFNITILQKGEYT----- 100
KI+ G SGK+T +K I S SL+ + T F+ L GE
Sbjct: 16 KIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTR 75
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGD-----QRLS 155
+++ + GQ D +VFV DSA +L A ++N+ + L
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPN-RLRANAESMRNMRENLAEYGLTLD 134
Query: 156 TVPILVIANKQDVPGALSAEEVGVALDLSS 185
VPI++ NK+D+P AL E V +D
Sbjct: 135 DVPIVIQVNKRDLPDALPVEMVRAVVDPEG 164
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-35
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
Q I+I G NSGK++L+ +++ + + ++ G + + + G
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTV---VSQEPLSAADYDG-SGVTLVDFPGHVK 103
Query: 112 VRRFWNTYFED----TDLLVFVVDSA-DPSKLPVAAMELKNLLGDQRLST---VPILVIA 163
+R + Y + L+F+VDS DP KL A L ++L S + IL+
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163
Query: 164 NKQDVPGALSAEEVGVALDLSSISSRQHR 192
NK ++ A ++ AL+ + R
Sbjct: 164 NKSELFTARPPSKIKDALESEIQKVIERR 192
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 6e-35
Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
Q I+I G NSGK++L+ +++ + + ++ G + + + G
Sbjct: 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTV---VSQEPLSAADYDG-SGVTLVDFPGHVK 67
Query: 112 VRRFWNTYFED----TDLLVFVVDSA-DPSKLPVAAMELKNLLGDQRLST---VPILVIA 163
+R + Y + L+F+VDS DP KL A L ++L S + IL+
Sbjct: 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127
Query: 164 NKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200
NK ++ A ++ AL+ + R K +
Sbjct: 128 NKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVE 164
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 6e-24
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNI-TILQKGEYTLNIFELGGQEN 111
+IL++GL SGKS++ K + + + L+ T I I++ GQ +
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81
Query: 112 VRRFW---NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
F T L++V+D+ D + + + + + V +K D
Sbjct: 82 FFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVD 140
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 4e-19
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQ-KGEYTLNIFELGGQ 109
K+L++G SGKS++ I S ++ + L T + L+ G TLN+++ GGQ
Sbjct: 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62
Query: 110 EN-----VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLST-VPILVIA 163
+ + + F+ +L+ V D L + K L ++ S I V+
Sbjct: 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122
Query: 164 NKQDVPGALSAEEV 177
+K D+ EE+
Sbjct: 123 HKMDLVQLDKREEL 136
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 2e-14
Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 17/140 (12%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
Q K IL L ++ + + ++++ + + G + +
Sbjct: 68 QHKFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEGDD-------------QQGSRYS 114
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPV--AAMELKNLLGDQRLST-VPILVI-ANKQD 167
V E D ++V ++ + + + S+ P+LV+ Q
Sbjct: 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQG 174
Query: 168 VPGALSAEEVGVALDLSSIS 187
+ + L L+ ++
Sbjct: 175 DVKRMPCFYLAHELHLNLLN 194
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 1e-13
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+L++G+ GKS++ K + L + L+ T ++ L + EL GQ N
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYF 60
Query: 114 RFW---NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
F+ LV+V+DS D + + + + ++ I V+ +K D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 4e-12
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 105 ELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVA---AMELKNLLGDQRLSTVPILV 161
+ G + +V E D ++V ++ + + + S P+LV
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 162 IA-NKQDVPGALSAEEVGVALDLSSIS 187
++ Q + + L L+ ++
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLLN 279
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-------LQKGEYTLNIFEL 106
K++I+G SGK+TL++Q+ S T G ++ +K + LN+++
Sbjct: 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 107 GGQENVRRFWNT---YFEDTDLLVFVVDSADPSKLPVAAME--LKNLLGDQRLSTVPILV 161
G+E F++T + L + V D + V AM+ L N+ R S+ P+++
Sbjct: 64 AGRE---EFYSTHPHFMTQRALYLAVYDLSKGQAE-VDAMKPWLFNI--KARASSSPVIL 117
Query: 162 IANKQDVPGALSAEEV 177
+ DV +
Sbjct: 118 VGTHLDVSDEKQRKAC 133
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-06
Identities = 40/239 (16%), Positives = 78/239 (32%), Gaps = 55/239 (23%)
Query: 1 MSSKIKLLMIASSGIIASVCTYATYQYWKKRRQSTPEDEGFEEVSKVDDIFQRK------ 54
+ S IK S + Y + R + + VS++ + +
Sbjct: 94 LMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 55 -----ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ 109
+LI G+ SGK+ + LS+ ++ F I + LN+
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALD-----VCLSYKVQCKMDFKI-------FWLNL----KN 191
Query: 110 EN-----VRRFWNTYFEDTDLLVFVVDSADPSKLPV--AAMELKNLLGDQRLSTVPILVI 162
N + ++ D + KL + EL+ LL + +LV+
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVL 250
Query: 163 ANKQDVPGALSAEEVGVALDLSS---ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218
N Q+ + A +LS +++R ++ T S H+S+ +
Sbjct: 251 LNVQN-------AKAWNAFNLSCKILLTTRFKQV----TDFLSAATTTHISLDHHSMTL 298
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 31/158 (19%)
Query: 26 QYWKKRRQSTPEDEGFEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP 85
QY++ ++ + E + ++ K+ ++G +GK++L+KQ+ +
Sbjct: 21 QYFQSIEEARSKGEALVHLQEI------KVHLIGDGMAGKTSLLKQLIGE--TFDPKESQ 72
Query: 86 TEGFNITI------------LQKGEYTLNIFELGGQENVRRFWNT---YFEDTDLLVFVV 130
T G N+ + E + ++ GGQE + + + + + ++
Sbjct: 73 THGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQE---IMHASHQFFMTRSSVYMLLL 129
Query: 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
DS S ++ G P++V+ NK D
Sbjct: 130 DSRTDSNKHYWLRHIEKYGGK-----SPVIVVMNKIDE 162
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGG 108
+ KI+++G GK+ L+ + ++ PT E + + + L++++ G
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYV--PTVFENYTASFEIDTQRIELSLWDTSG 64
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLG------DQRLSTVPIL 160
+ D+D L+ F + + L ++L + +L
Sbjct: 65 SPYYDNVRPLSYPDSDAVLICFDISRPE---------TLDSVLKKWKGEIQEFCPNTKML 115
Query: 161 VIANKQD 167
++ K D
Sbjct: 116 LVGCKSD 122
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 6e-05
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE-YTLNIFELGGQEN 111
K+ I+G +SGKS L+ + +G + P G F I+ G+ Y L I + GG
Sbjct: 22 KVGIVGNLSSGKSALVHRYLTG--TYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP- 78
Query: 112 VRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLGDQR----LSTVPILVIANK 165
+ D + VF ++ + + N S VP++++ +
Sbjct: 79 --EL--QFAAWVDAVVFVFSLEDEISFQ------TVYNYFLRLCSFRNASEVPMVLVGTQ 128
Query: 166 QDVPGA 171
+ A
Sbjct: 129 DAISAA 134
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 6e-05
Identities = 29/166 (17%), Positives = 64/166 (38%), Gaps = 23/166 (13%)
Query: 30 KRRQSTPE--DEGFEEVSKVDDI--FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP 85
+ ++ E + + + ++I G N GKSTL+K +++ ++
Sbjct: 141 RDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT 200
Query: 86 TEGFNITILQKGEYTLNIFELGG-------QENV--RRFWNTYFEDTDLLVFVVDSADPS 136
T G N+ + G + I + G + N ++ +L++++ D ++
Sbjct: 201 TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC 260
Query: 137 KLPVAAM-----ELKNLLGDQRLSTVPILVIANKQDVPGALSAEEV 177
P+ E+ D +P LV+ NK DV + + +
Sbjct: 261 GFPLEEQIHLFEEVHGEFKD-----LPFLVVINKIDVADEENIKRL 301
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-05
Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ ++ + + ++ ++ G+ L +++ GQE
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADP--SKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
+ R + TD L+ F + S + E++ PI+++ K
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-----HHCPNTPIILVGTKL 119
Query: 167 D 167
D
Sbjct: 120 D 120
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 3e-04
Identities = 17/122 (13%), Positives = 47/122 (38%), Gaps = 12/122 (9%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQE 110
+ K++++G GK+ +++ ++ ++ E + + + + L++++ G
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAM---ELKNLLGDQRLSTVPILVIANK 165
+ D+D LL F + + + E+ + +L+I K
Sbjct: 87 YYDNVRPLCYSDSDAVLLCFDISRPE-TVDSALKKWRTEILDYCPS-----TRVLLIGCK 140
Query: 166 QD 167
D
Sbjct: 141 TD 142
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGG 108
++K++++G GK+ L+ S + PT E + I G+ L +++ G
Sbjct: 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYV--PTVFENYVADIEVDGKQVELALWDTAG 82
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADPSKLPVAAMELKNLLG------DQRLSTVPIL 160
QE+ R + DTD L+ F VDS D L+N+ VPI+
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSVDSPD---------SLENIPEKWVPEVKHFCPNVPII 133
Query: 161 VIANKQD 167
++ANK+D
Sbjct: 134 LVANKKD 140
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 3e-04
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 81 HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPV 140
T G T Q + ++F++GGQ + RR W F D ++FVV S+ + +
Sbjct: 199 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 258
Query: 141 ---------AAMEL-KNLLGDQRLSTVPILVIANKQDV 168
A+ L K++ ++ L T+ +++ NKQD+
Sbjct: 259 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 4e-04
Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 81 HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD------ 134
PT G + ++GGQ + RR W FE+ ++F+V ++
Sbjct: 149 RVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV 208
Query: 135 ----PSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+++ + + ++ +++ NK+D+
Sbjct: 209 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGG 108
K +++G GK++L+ ++ PT + F+ + G L + + G
Sbjct: 20 GVKCVLVGDGAVGKTSLVVSYTTN--GYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 109 QENVRRFWNTYFEDTD--LLVFVVDSADP--SKLPVAAMELKNLLGDQRLSTVPILVIAN 164
Q+ + + +TD LL F V S + E++ PI+++
Sbjct: 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-----CHCPKAPIILVGT 132
Query: 165 KQD 167
+ D
Sbjct: 133 QSD 135
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 5e-04
Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPT--EGFNITILQKGE-YTLNIFELGGQE 110
K +++G GK+ L+ ++ + PT + ++ ++ G+ L +++ GQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYI--PTVFDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 111 NVRRFWNTYFEDTD--LLVFVVDSADP--SKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166
+ R + TD L+ F + S + E++ PI+++ K
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-----HHCPNTPIILVGTKL 144
Query: 167 D 167
D
Sbjct: 145 D 145
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 224 | |||
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.97 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.97 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.97 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.97 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.97 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.97 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.97 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.97 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.97 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.97 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.97 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.97 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.97 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.96 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.96 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.96 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.95 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.95 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.95 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.95 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.95 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.95 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.95 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.95 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.95 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.95 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.95 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.95 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.95 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.95 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.95 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.95 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.95 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.95 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.95 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.95 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.95 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.95 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.95 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.95 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.95 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.95 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.95 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.95 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.95 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.95 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.95 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.95 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.95 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.95 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.95 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.95 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.95 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.95 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.94 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.94 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.94 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.94 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.94 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.94 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.94 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.94 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.94 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.94 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.94 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.94 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.94 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.94 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.94 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.94 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.94 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.94 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.94 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.94 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.94 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.94 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.94 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.94 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.94 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.94 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.94 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.94 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.94 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.94 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.94 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.93 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.93 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.93 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.93 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.93 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.93 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.93 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.93 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.93 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.93 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.93 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.92 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.92 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.92 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.91 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.91 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.91 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.91 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.91 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.85 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.91 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.9 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.9 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.9 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.9 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.89 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.89 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.89 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.89 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.89 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.89 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.88 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.88 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.88 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.88 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.88 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.88 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.88 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.88 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.87 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.87 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.87 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.87 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.86 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.86 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.86 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.86 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.86 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.86 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.85 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.85 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.85 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.85 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.85 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.84 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.84 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.84 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.83 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.82 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.82 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.82 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.82 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.82 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.82 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.82 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.82 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.81 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.81 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.81 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.81 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.81 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.8 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.8 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.8 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.8 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.8 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.8 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.79 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.79 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.79 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.78 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.78 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.78 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.78 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.77 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.76 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.74 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.74 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.73 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.73 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.72 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.72 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.7 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.7 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.69 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.68 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.68 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.67 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.66 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.66 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.66 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.65 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.65 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.63 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.59 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.56 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.56 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.55 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.53 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.53 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.53 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.5 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.5 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.5 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.48 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.48 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.46 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.46 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.44 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.44 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.44 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.37 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.31 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.3 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.27 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.94 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.93 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.83 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.68 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.68 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.67 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.59 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.56 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.5 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.47 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.37 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.31 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.3 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.22 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.16 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.12 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.03 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.01 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.88 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.88 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.83 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.41 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.34 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.18 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.17 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.11 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.91 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 96.85 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.8 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 96.8 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.77 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 96.75 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.72 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.72 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 96.71 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.69 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 96.64 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 96.64 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.64 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 96.63 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.62 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.62 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 96.61 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.58 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 96.58 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 96.54 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.54 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.52 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 96.5 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.5 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 96.48 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.47 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 96.46 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 96.45 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 96.45 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.45 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.44 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.44 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 96.43 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.42 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 96.42 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 96.42 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 96.41 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.41 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.41 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.4 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.4 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 96.4 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 96.39 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 96.37 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 96.37 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.37 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 96.36 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 96.36 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.35 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.34 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 96.34 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 96.33 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.33 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.32 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.32 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.32 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 96.31 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.31 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 96.31 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.3 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 96.3 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.29 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.29 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.28 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.27 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 96.26 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 96.26 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 96.25 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.24 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.24 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.23 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.22 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.21 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.21 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.19 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 96.19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 96.18 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 96.15 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.15 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.14 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.14 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.12 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.11 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.1 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.1 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.07 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.06 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.06 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.05 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.05 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 96.04 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.04 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.03 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.01 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.0 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.99 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.98 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 95.97 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.95 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.95 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.94 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.94 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 95.94 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.94 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 95.93 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.92 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 95.92 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 95.91 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 95.91 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.9 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 95.89 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.88 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.87 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 95.86 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.86 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.86 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.85 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 95.84 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 95.84 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 95.83 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 95.83 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 95.82 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.8 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.79 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.78 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.78 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 95.77 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.76 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 95.75 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 95.74 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 95.74 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 95.74 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.73 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 95.73 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 95.73 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.72 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.7 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.69 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 95.69 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 95.68 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.68 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 95.67 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 95.63 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 95.63 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.62 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.62 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.61 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 95.61 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.6 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 95.59 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 95.58 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 95.56 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 95.55 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 95.55 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.55 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.51 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 95.49 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.49 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.49 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.48 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 95.48 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.47 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.46 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 95.46 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.45 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 95.44 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 95.4 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.37 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 95.32 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.26 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 95.24 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 95.23 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 95.18 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.17 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 95.17 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.17 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.17 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 95.13 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 95.11 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.1 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.09 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.07 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 95.07 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.05 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.04 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.03 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.02 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 95.01 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 95.01 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 94.97 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 94.97 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 94.97 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.91 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.88 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.85 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.81 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 94.81 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 94.81 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.79 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 94.78 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.75 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 94.75 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 94.74 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 94.73 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 94.71 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 94.68 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 94.68 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 94.64 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 94.63 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 94.62 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.57 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 94.57 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 94.56 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 94.56 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 94.54 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.53 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 94.49 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 94.49 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.48 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 94.46 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 94.42 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 94.41 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 94.41 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 94.39 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.38 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.37 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.36 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 94.34 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.3 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.3 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 94.29 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 94.28 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.18 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.18 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 94.15 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 94.13 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 94.13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 94.04 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.01 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.99 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.98 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 93.96 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 93.96 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 93.94 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 93.91 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 93.9 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 93.9 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 93.89 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 93.86 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.86 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 93.82 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.79 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 93.78 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 93.77 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 93.76 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 93.76 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 93.74 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 93.72 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.71 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.69 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 93.65 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 93.62 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 93.62 |
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=197.55 Aligned_cols=165 Identities=32% Similarity=0.568 Sum_probs=138.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
....++|+++|++|+|||||++++.++.+.. .+.+|.+.....+...+..+.+|||||++++...+..+++.+|++++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE--DMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 3467999999999999999999999988876 67788998888888889999999999999999998889999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.++........ +++++|||++|.|+ +
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~SA~~g~gv-~ 173 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDRE--ICCYSISCKEKDNI-D 173 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSC--EEEEECCTTTCTTH-H
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCC--eeEEEEECCCCCCH-H
Confidence 99999999999999999998775434689999999999998876777777776654333333 38999999999999 4
Q ss_pred chHHHHHHHH
Q psy12173 209 VSVVEAEQAM 218 (224)
Q Consensus 209 ~~~~~i~~~l 218 (224)
++...+.+.+
T Consensus 174 ~l~~~l~~~~ 183 (188)
T 1zd9_A 174 ITLQWLIQHS 183 (188)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 4555555443
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=207.74 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=120.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.+||+++|++|+|||||++|+..+.|.. .+.||++..+ ..+..+ .+.+.+|||+|+++++.++..+++.+++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~--~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCC--CcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 467899999999999999999999999988 7788887543 344443 3789999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|||++++++|+++..|+..+..... .+.|++||+||+|+.+. ...++..+..+. ++++|++|||++|
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~-------~~~~~~e~SAktg 160 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAKE-------LNVMFIETSAKAG 160 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEEEBTTTT
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHHH-------hCCeeEEEeCCCC
Confidence 9999999999999999999999876543 57899999999999764 445554444321 2238999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.||++.|...+..
T Consensus 161 ~nV~e~F~~i~~~ 173 (216)
T 4dkx_A 161 YNVKQLFRRVAAA 173 (216)
T ss_dssp BSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9997777655544
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=190.41 Aligned_cols=160 Identities=33% Similarity=0.560 Sum_probs=134.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
+||+++|++|+|||||++++.++.+.. +.||.++....+..++..+.+|||||+++++..+..+++++|++++|+|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC---CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc---ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 489999999999999999999888654 46788888888888889999999999999999998899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHH
Q psy12173 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVV 212 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 212 (224)
++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+.........+ ++++|||++|.|+++ +..
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~-l~~ 154 (164)
T 1r8s_A 78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW--YIQATCATSGDGLYE-GLD 154 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE--EEEECBTTTTBTHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccE--EEEEcccCCCcCHHH-HHH
Confidence 99999999999999887764446899999999999988777777777776544433444 899999999999944 444
Q ss_pred HHHHHH
Q psy12173 213 EAEQAM 218 (224)
Q Consensus 213 ~i~~~l 218 (224)
.+.+.+
T Consensus 155 ~l~~~i 160 (164)
T 1r8s_A 155 WLSNQL 160 (164)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444433
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=197.59 Aligned_cols=167 Identities=31% Similarity=0.530 Sum_probs=138.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN-TSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
...++|+++|++|+|||||++++.+.. +.. .+.+|.++....+.+++..+.+|||||++++...+..+++.+|++++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ--NILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCS--SCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCC--CcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 467899999999999999999999887 455 56788898888888888999999999999999988889999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCC--CCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRL--STVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++.....++..+...... .+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi 174 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPW--HICASDAIKGEGL 174 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE--EEEECBTTTTBTH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCce--EEEEccCCCCcCH
Confidence 99999999999999999998876544 5799999999999988777788877776444333344 8999999999999
Q ss_pred ccchHHHHHHHHHHh
Q psy12173 207 LHVSVVEAEQAMYAL 221 (224)
Q Consensus 207 ~~~~~~~i~~~l~~~ 221 (224)
+++...+.+.+.++
T Consensus 175 -~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 175 -QEGVDWLQDQIQTV 188 (190)
T ss_dssp -HHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHHHh
Confidence 56666666665544
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=193.09 Aligned_cols=162 Identities=38% Similarity=0.640 Sum_probs=136.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.++. .. .+.+|.++....+..++..+.+|||||++++...+..+++.+|++++|+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~--~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VD--TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 93 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CS--SCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CC--cccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 45899999999999999999999888 54 6778889888888889999999999999999999899999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+++.+
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 94 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHW--RIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECCTTTCTTHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCce--EEEEeeCCCCCCHHHHH
Confidence 9999999999999999887764446799999999999988877777777776543333344 89999999999995444
Q ss_pred HHHHHHHH
Q psy12173 211 VVEAEQAM 218 (224)
Q Consensus 211 ~~~i~~~l 218 (224)
..+.+.+
T Consensus 172 -~~l~~~i 178 (186)
T 1ksh_A 172 -DWLLDDI 178 (186)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 4444443
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=189.09 Aligned_cols=163 Identities=28% Similarity=0.552 Sum_probs=137.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.++.+. .+.+|.++....+.+++..+.+|||||++.+...+..+++.+|++++|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV---TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC---CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4689999999999999999999988864 3567888888888889999999999999999998889999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+.........+ +++++||++|.|+ +++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi-~~l 159 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW--QIFKTSATKGTGL-DEA 159 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE--EEEECCTTTCTTH-HHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce--EEEECcCCCCcCH-HHH
Confidence 9999999999999999887764446899999999999988877777777776544444444 8999999999999 445
Q ss_pred HHHHHHHHH
Q psy12173 211 VVEAEQAMY 219 (224)
Q Consensus 211 ~~~i~~~l~ 219 (224)
...+.+.+.
T Consensus 160 ~~~l~~~i~ 168 (171)
T 1upt_A 160 MEWLVETLK 168 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=193.68 Aligned_cols=161 Identities=39% Similarity=0.669 Sum_probs=134.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.+..+. .+.+|.++....+..++..+.+|||||++.++..+..+++.+|++++|+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~---~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 91 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCE---EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC---cccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 4689999999999999999999988643 4567888888888888999999999999999999989999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+++.|
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVW--QIQSCSALTGEGVQDGM 169 (181)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECCTTTCTTHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCce--EEEEccCCCCCCHHHHH
Confidence 9999999999999998887654446799999999999988777777777776544333444 89999999999995544
Q ss_pred HHHHHHH
Q psy12173 211 VVEAEQA 217 (224)
Q Consensus 211 ~~~i~~~ 217 (224)
. .+.+.
T Consensus 170 ~-~l~~~ 175 (181)
T 1fzq_A 170 N-WVCKN 175 (181)
T ss_dssp H-HHHHT
T ss_pred H-HHHHH
Confidence 4 44433
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-30 Score=193.60 Aligned_cols=163 Identities=31% Similarity=0.494 Sum_probs=132.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.++.+. .+.+|.++....+.+++..+.+|||||++++...+..+++.+|++++|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 91 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 91 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE---EEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---cCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 3579999999999999999999988765 3467888888888888999999999999999888888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+ +++
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sa~~g~gi-~~l 168 (187)
T 1zj6_A 92 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW--HIQACCALTGEGL-CQG 168 (187)
T ss_dssp ETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE--EEEECBTTTTBTH-HHH
T ss_pred eCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCc--EEEEccCCCCcCH-HHH
Confidence 9999999999999999988764345899999999999988777777777776543333344 8999999999999 445
Q ss_pred HHHHHHHHH
Q psy12173 211 VVEAEQAMY 219 (224)
Q Consensus 211 ~~~i~~~l~ 219 (224)
...+.+.+.
T Consensus 169 ~~~l~~~~~ 177 (187)
T 1zj6_A 169 LEWMMSRLK 177 (187)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=193.46 Aligned_cols=157 Identities=32% Similarity=0.518 Sum_probs=133.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.+.++|+++|++|+|||||++++.++.+ . .+.+|.++....+.+++..+.+|||||++++...+..+++.+|++++|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-V--HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-E--EEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-C--ccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4678999999999999999999999987 3 567788888888888899999999999999999888999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+++.
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW--HIQACCALTGEGLCQG 173 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCce--EEEEccCCCCcCHHHH
Confidence 99999999999999999988754346899999999999988777888888776544433444 8999999999999544
Q ss_pred hH
Q psy12173 210 SV 211 (224)
Q Consensus 210 ~~ 211 (224)
+.
T Consensus 174 ~~ 175 (181)
T 2h17_A 174 LE 175 (181)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-30 Score=194.92 Aligned_cols=169 Identities=29% Similarity=0.528 Sum_probs=135.2
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
.......+|+++|++|+|||||++++.+..+... .+.+|.++....+...+..+.+|||||++++...+..+++.+|++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-HITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC-----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc-ccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 3445788999999999999999999999886541 246788888888888899999999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCC-------CCCcEEEEEeCCCCCCCCCHHHHHhhcCcccc-cCcccceeEEEe
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRL-------STVPILVIANKQDVPGALSAEEVGVALDLSSI-SSRQHRIKLIAT 198 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 198 (224)
|+|+|+++++++.....|+..+...... .++|+++|+||+|+.+....+++.+.+..... .... +++++|
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 168 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHP--FVIFAS 168 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSC--EEEEEC
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCe--eEEEEe
Confidence 9999999999999999999988765211 27899999999999988777888777764433 2233 499999
Q ss_pred ecCCCCccccchHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
||++|.|+++.|. .+.+.+.
T Consensus 169 Sa~~g~gv~~l~~-~l~~~~~ 188 (199)
T 4bas_A 169 NGLKGTGVHEGFS-WLQETAS 188 (199)
T ss_dssp BTTTTBTHHHHHH-HHHHHHH
T ss_pred eCCCccCHHHHHH-HHHHHHH
Confidence 9999999955554 4444443
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=191.56 Aligned_cols=164 Identities=37% Similarity=0.617 Sum_probs=134.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
..++|+++|++|+|||||++++.++.+ . .+.+|.++....+.+++..+.+|||||++++...+..+++.+|++++|+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-V--TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV 93 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-E--EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-C--ccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 468999999999999999999998876 3 5678888888888888899999999999998888888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........+ ++++|||++|.|+ +++
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sa~~~~gi-~~l 170 (183)
T 1moz_A 94 DSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSW--SIVASSAIKGEGI-TEG 170 (183)
T ss_dssp ETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCE--EEEEEBGGGTBTH-HHH
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCce--EEEEccCCCCcCH-HHH
Confidence 9999999999999999988765456899999999999988777788888776544433444 8999999999999 555
Q ss_pred HHHHHHHHHH
Q psy12173 211 VVEAEQAMYA 220 (224)
Q Consensus 211 ~~~i~~~l~~ 220 (224)
...+.+.+.+
T Consensus 171 ~~~l~~~~~~ 180 (183)
T 1moz_A 171 LDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555543
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=191.53 Aligned_cols=163 Identities=33% Similarity=0.563 Sum_probs=137.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+.++|+++|++|+|||||++++..+.+.. +.||.++....+..++..+.+|||||++++...+..+++.+|++++|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 97 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT---TVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV 97 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE---ECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC---cCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEE
Confidence 46899999999999999999999887653 467888888888889999999999999998888888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+.........+ ++++|||++|.|+ +++
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi-~~l 174 (189)
T 2x77_A 98 DSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTW--TIVKSSSKTGDGL-VEG 174 (189)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECCTTTCTTH-HHH
T ss_pred eCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCce--EEEEccCCCccCH-HHH
Confidence 9999999999999999988765556899999999999988777778877776544444444 8999999999999 555
Q ss_pred HHHHHHHHH
Q psy12173 211 VVEAEQAMY 219 (224)
Q Consensus 211 ~~~i~~~l~ 219 (224)
...+.+.+.
T Consensus 175 ~~~l~~~i~ 183 (189)
T 2x77_A 175 MDWLVERLR 183 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=193.42 Aligned_cols=162 Identities=32% Similarity=0.521 Sum_probs=131.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
...++|+++|++|+|||||++++..+.+.. +.||.++....+..++..+.+|||||++++...+..+++.+|++++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv 103 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 103 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE---EEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc---cCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 456899999999999999999999888653 46788888888888899999999999999988888889999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+.........+ ++++|||++|.|+++.
T Consensus 104 ~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~SA~~g~gi~~l 181 (192)
T 2b6h_A 104 VDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTW--YVQATCATQGTGLYDG 181 (192)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE--EEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCce--EEEECcCCCcCCHHHH
Confidence 99999999999999999987764446899999999999988777788887776544433444 8999999999999544
Q ss_pred hHHHHHHH
Q psy12173 210 SVVEAEQA 217 (224)
Q Consensus 210 ~~~~i~~~ 217 (224)
+ ..+.+.
T Consensus 182 ~-~~l~~~ 188 (192)
T 2b6h_A 182 L-DWLSHE 188 (192)
T ss_dssp H-HHHHHH
T ss_pred H-HHHHHH
Confidence 4 444443
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=189.43 Aligned_cols=158 Identities=32% Similarity=0.534 Sum_probs=131.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+..+|+++|++|+|||||++++.++.+. .+.+|.+.....+.+++..+.+|||||++.++..+..+++.+|++++|+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC---CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 4579999999999999999999998864 4567888888888888999999999999999988888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc-----CcccceeEEEeecCCCCc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS-----SRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~g 205 (224)
|++++++++....++..+.......+.|+++|+||+|+.+....+++.+.++..... .....+++++|||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 999999999999999998775444689999999999998877788888776543200 112335899999999999
Q ss_pred cccchH
Q psy12173 206 HLHVSV 211 (224)
Q Consensus 206 v~~~~~ 211 (224)
+++.+.
T Consensus 179 i~~l~~ 184 (190)
T 1m2o_B 179 YLEAFQ 184 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 955444
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=191.79 Aligned_cols=158 Identities=28% Similarity=0.444 Sum_probs=123.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+..+|+++|++|+|||||++++.++.+. .+.+|.+.....+.+++..+.+|||||++.++..+..+++.+|++++|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~---~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC---ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 4579999999999999999999998864 3567888777888888899999999999999988888999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccc---------ccC-cccceeEEEeec
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSS---------ISS-RQHRIKLIATQA 200 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~Sa 200 (224)
|+++++++.+...|+..+.......++|+++|+||+|+.+....+++.+.++... ... ....+++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999999987754446899999999999988777788877765332 110 113348999999
Q ss_pred CCCCccccchH
Q psy12173 201 PSNLHHLHVSV 211 (224)
Q Consensus 201 ~~~~gv~~~~~ 211 (224)
++|.|+++.|.
T Consensus 181 ~~g~gv~~l~~ 191 (198)
T 1f6b_A 181 LKRQGYGEGFR 191 (198)
T ss_dssp TTTBSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 99999944443
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=183.46 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=123.7
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
...+..+||+++|++|+|||||++++..+.+.. .+.+|.+.....+.+++ ..+.+|||+|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ--EESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC--CCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 445678999999999999999999999999877 56667555555666665 677889999999887 577899
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC----CCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG----ALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+ ....++..+..+.. . .++|++|||
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----~--~~~~~e~Sa 161 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL----K--RCTYYETCA 161 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT----T--TCEEEEEBT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc----C--CCeEEEecC
Confidence 9999999999999999999999887765445789999999999942 24444444443211 1 138999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
++|.|+++.|...+..++.
T Consensus 162 ~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 162 TYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999996666655555444
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-28 Score=185.13 Aligned_cols=162 Identities=20% Similarity=0.256 Sum_probs=121.9
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
..+..++|+++|++|+|||||++++....+.. .+.+|.+ +....+.+++ ..+.+|||||++++...+..+++.+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSE--RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCC--CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 34567999999999999999999999998776 5566655 4455566655 6899999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccce-eEEEeec
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRI-KLIATQA 200 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 200 (224)
|++|+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+..+. .++ ++++|||
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~~SA 174 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-------YDILCAIETSA 174 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------TTCSEEEECBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH-------cCCCEEEEEeC
Confidence 99999999999999999888888877653 257899999999999753 445555444321 123 7999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
++|.|+++.|...+.....
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999996655554444443
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=184.28 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=127.1
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
..+..++|+++|++|+|||||++++..+.+.. .+.+|.+. ....+..++ ..+.+|||||++++...+..+++.+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567999999999999999999999998877 55666664 344555555 6899999999999999999999999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|++++|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.... . ++++++|||+
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~Sa~ 171 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEA-----Q--DMYYLETSAK 171 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----H--TCCEEECCTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-----c--CCEEEEEeCC
Confidence 99999999999999988888888776643 257899999999999643 334444333211 1 2389999999
Q ss_pred CCCccccchHHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~ 220 (224)
+|.|+++.|...+...+.+
T Consensus 172 ~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999966666555555443
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-28 Score=199.41 Aligned_cols=164 Identities=32% Similarity=0.530 Sum_probs=135.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
...++|+++|++|+|||||++++.+..+.. . .+|.+.....+..++..+.+|||||++.+...+..+++.+|++|+|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--T-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEE--E-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCC--c-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 456799999999999999999999988654 3 4788888888888999999999999999998888899999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|+++++++.....++..+.......++|+++|+||+|+.+....+++.+.+.........+ ++++|||++|.|+ ++
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~vSAk~g~gi-~e 316 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW--YIQATCATSGDGL-YE 316 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCE--EEEECBTTTTBTH-HH
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCC--EEEEEECCCCcCH-HH
Confidence 99999999999999999988765556899999999999998888888888887655544444 9999999999999 44
Q ss_pred hHHHHHHHHH
Q psy12173 210 SVVEAEQAMY 219 (224)
Q Consensus 210 ~~~~i~~~l~ 219 (224)
+...+.+.+.
T Consensus 317 l~~~l~~~l~ 326 (329)
T 3o47_A 317 GLDWLSNQLR 326 (329)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 4445555443
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=179.42 Aligned_cols=161 Identities=20% Similarity=0.227 Sum_probs=126.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+.. .+.++.+. ....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD--DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 467899999999999999999999998877 55566653 344455555 689999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... . ++++++|||++|
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 157 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFAQE-----N--ELMFLETSALTG 157 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHHH-----c--CCEEEEecCCCC
Confidence 9999999999999888888877766432 57899999999999643 334444433321 1 238999999999
Q ss_pred CccccchHHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~ 220 (224)
.|+++.+...+...+.+
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 158 ENVEEAFVQCARKILNK 174 (186)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99966666555555543
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=179.96 Aligned_cols=161 Identities=18% Similarity=0.250 Sum_probs=126.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE---EEEeC-----------CeEEEEEEcCCchhHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT---ILQKG-----------EYTLNIFELGGQENVRRF 115 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~---~~~~~-----------~~~~~l~D~~G~~~~~~~ 115 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|.+.... .+..+ ...+.+|||||++++...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNS--KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCc--CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 467899999999999999999999988776 56677775544 34443 468999999999999999
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccce
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRI 193 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~ 193 (224)
+..+++.+|++|+|+|++++.++.....|+..+.......++|+++|+||+|+.+. ...++..+..+. .++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~ 159 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-------YGI 159 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-------cCC
Confidence 99999999999999999999999988888888877654468999999999999753 334444443321 123
Q ss_pred eEEEeecCCCCccccchHHHHHHHHH
Q psy12173 194 KLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 194 ~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+++++||++|.|+++.+...+.....
T Consensus 160 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 160 PYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999995555544444433
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=180.59 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=124.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++.+...+..+++.+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 467899999999999999999999998877 5555555 4445566655 689999999999999988899999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... .+++++++||++|
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~g 163 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-------LGIPFLETSAKNA 163 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-------TTCCEEEECTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHHHHHHH-------cCCcEEEEeCCCC
Confidence 9999999999999998888888766532 57899999999999765 233333332221 1238999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.|+++.|...+.....
T Consensus 164 ~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIKK 179 (196)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9996555544444433
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=180.62 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=124.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
..+.+||+++|++|+|||||++++..+.+.. .+.++++... .....++ ..+.+|||||++.+...+..+++.+|+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVD--DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3567999999999999999999999988777 6667766443 3344444 567779999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC-C
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP-S 202 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~ 202 (224)
+++|+|+++++++.....|+..+.......++|+++|+||+|+.+. ...++..+..+.. +++++++||+ +
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~~~Sa~~~ 165 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-------NIPYIETSAKDP 165 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-------TCCEEEEBCSSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-------CCeEEEeccCCC
Confidence 9999999999999999999888876544468999999999999763 4444444433211 2389999999 9
Q ss_pred CCccccchHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAM 218 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l 218 (224)
|.|+++.|. .+.+.+
T Consensus 166 ~~~v~~l~~-~l~~~i 180 (183)
T 3kkq_A 166 PLNVDKTFH-DLVRVI 180 (183)
T ss_dssp CBSHHHHHH-HHHHHH
T ss_pred CCCHHHHHH-HHHHHH
Confidence 999955554 454444
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=177.78 Aligned_cols=157 Identities=20% Similarity=0.219 Sum_probs=99.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.+||+++|++|+|||||++++.+..+.. ..++.+... ..+..+ ...+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP---EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------CEEEEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC---CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 5799999999999999999999776543 223333222 233333 4688999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|++++++++....|+..+.......++|+++|+||+|+.+. ...++....... .+++++++||++|.|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-------FDCKFIETSAALHHNV 151 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHH-------TTCEEEECBGGGTBSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHH-------hCCcEEEeccCCCCCH
Confidence 9999999999999999999887655568999999999999754 333333332211 1238999999999999
Q ss_pred ccchHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMY 219 (224)
Q Consensus 207 ~~~~~~~i~~~l~ 219 (224)
++.+ ..+.+.+.
T Consensus 152 ~~l~-~~l~~~~~ 163 (166)
T 3q72_A 152 QALF-EGVVRQIR 163 (166)
T ss_dssp HHHH-HHHHHHHH
T ss_pred HHHH-HHHHHHHH
Confidence 5554 45544443
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-28 Score=184.59 Aligned_cols=165 Identities=14% Similarity=0.219 Sum_probs=126.7
Q ss_pred ccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEe--CCeEEEEEEcCCchhHHHHHHhhcc
Q psy12173 46 KVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQK--GEYTLNIFELGGQENVRRFWNTYFE 121 (224)
Q Consensus 46 ~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~ 121 (224)
....+..+||+++|++|+|||||++++.+..+.. .+.++.+ +....+.. ....+.+|||||++.+...+..+++
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTP--AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYR 94 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCC--CEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHT
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCc--ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHc
Confidence 3445678999999999999999999999988776 4444444 44444444 4589999999999999999999999
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
.+|++++|+|++++++++....|+..+.... ..+.|+++|+||+|+.+. ...++.....+. .+++++++|
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~S 166 (191)
T 3dz8_A 95 GAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ-------LGFDFFEAS 166 (191)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEECB
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-------cCCeEEEEE
Confidence 9999999999999999998888888876643 357999999999999653 333333333221 123899999
Q ss_pred cCCCCccccchHHHHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~~ 220 (224)
|++|.|+++.|...+...+.+
T Consensus 167 a~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 167 AKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999966665555544443
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=181.34 Aligned_cols=164 Identities=20% Similarity=0.252 Sum_probs=124.8
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
.....+||+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 33567999999999999999999999998776 4444444 4555566654 6899999999999988888889999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|++++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+..+. .+++++++||+
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~ 166 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEGEAFARE-------HGLIFMETSAK 166 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEEECTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccCCccccCHHHHHHHHHH-------cCCEEEEEeCC
Confidence 999999999999999988888888876532 57899999999999653 334444433321 12389999999
Q ss_pred CCCccccchHHHHHHHHHHh
Q psy12173 202 SNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~~ 221 (224)
+|.|+++.|...+...+.+.
T Consensus 167 ~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999666666555555443
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=179.55 Aligned_cols=158 Identities=23% Similarity=0.270 Sum_probs=121.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
.+.++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++.+...+..+++.+|+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 467899999999999999999999998776 4555555 4455566666 789999999999998888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+.... .+.|+++|+||+|+.+. ....+....... .+++++++||++|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 155 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQ-------MGIQLFETSAKEN 155 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHH-------cCCeEEEEECCCC
Confidence 999999999999999988888887653 57999999999998754 233333332221 1238999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.|++ ++...+.+.+.
T Consensus 156 ~gi~-~l~~~l~~~~~ 170 (181)
T 3tw8_B 156 VNVE-EMFNCITELVL 170 (181)
T ss_dssp BSHH-HHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHH
Confidence 9994 44445555444
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=183.27 Aligned_cols=160 Identities=21% Similarity=0.261 Sum_probs=97.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.++|+++|++|+|||||++++.+..+.. .+.+|++ +....+.+++ ..+.+|||||++++...+..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS--TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp SEEEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 467899999999999999999999888766 5556665 3444556655 789999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~ 155 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVNDKRQVSKERGEKLALD-------YGIKFMETSAKAN 155 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-------HTCEEEECCC---
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccCCccCcCCHHHHHHHHHH-------cCCeEEEEeCCCC
Confidence 9999999999999999888888776532 57899999999999764 334444443321 1238999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.|+++.+...+.....
T Consensus 156 ~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 156 INVENAFFTLARDIKA 171 (183)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9996665555544443
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=182.12 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=119.4
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHH-HHHhhccCC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRR-FWNTYFEDT 123 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~-~~~~~~~~~ 123 (224)
......++|+++|++|+|||||++++.+..+........+.++....+.+++ ..+.+|||+|++.+.. ++..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3345679999999999999999999986543331122233344455555554 6788999999988765 667778999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|++|+|+|+++++++..+..|+..+.......+.|+++|+||+|+.+. ...++..+..+. . ++++++|||+
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----~--~~~~~e~Sa~ 170 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----L--SCKHIETSAA 170 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-----T--TCEEEEEBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-----h--CCEEEEEcCC
Confidence 999999999999999999999988876543357999999999999754 344444433321 1 2389999999
Q ss_pred CCCccccchHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQA 217 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~ 217 (224)
+|.|+++.|...+...
T Consensus 171 ~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQI 186 (195)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999966665555444
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=177.78 Aligned_cols=159 Identities=17% Similarity=0.218 Sum_probs=122.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+.++|+++|++|+|||||++++.++.+.. .+.+|.+..... +..+ ...+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 45899999999999999999999988776 666776644432 3333 478999999999999888888899999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|++++++++....|+..+.......+.|+++|+||+|+.+. ...++..+..+.. . +++++++||++|.|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~--~~~~~~~Sa~~~~g 153 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW----C--NCAFLESSAKSKIN 153 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----T--SCEEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc----c--CCcEEEecCCCCCC
Confidence 99999999999988888888776544468999999999999654 3344444333210 1 23899999999999
Q ss_pred cccchHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAM 218 (224)
Q Consensus 206 v~~~~~~~i~~~l 218 (224)
+ +++...+.+.+
T Consensus 154 i-~~l~~~l~~~i 165 (167)
T 1c1y_A 154 V-NEIFYDLVRQI 165 (167)
T ss_dssp H-HHHHHHHHHHH
T ss_pred H-HHHHHHHHHHH
Confidence 9 44444554443
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=186.17 Aligned_cols=165 Identities=18% Similarity=0.239 Sum_probs=124.6
Q ss_pred ccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC------------CeEEEEEEcCCchh
Q psy12173 46 KVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG------------EYTLNIFELGGQEN 111 (224)
Q Consensus 46 ~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~------------~~~~~l~D~~G~~~ 111 (224)
....++.++|+++|++|+|||||+++|.+..+.. .+.+|.+... ..+.++ ...+.+|||||+++
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 96 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNP--KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER 96 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCC--EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCc--CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh
Confidence 3444678999999999999999999999988766 5556655333 334333 57899999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCc
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSR 189 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~ 189 (224)
+...+..+++.+|++|+|+|+++++++.....|+..+.......++|+++|+||+|+.+. ...++..+..+.
T Consensus 97 ~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~------ 170 (217)
T 2f7s_A 97 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK------ 170 (217)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH------
T ss_pred HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH------
Confidence 999999999999999999999999999888888777655443367999999999999753 334444433321
Q ss_pred ccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
.++++++|||++|.|+++.+...+...+.
T Consensus 171 -~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 171 -YGIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp -TTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred -CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 12389999999999996555544444443
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=178.81 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=124.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+.. .+.++.+... ..+... ...+.+|||||++++...+..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTP--AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCS--CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 457899999999999999999999998877 5566666443 344444 4789999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 155 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADH-------LGFEFFEASAKDN 155 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH-------HTCEEEECBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHH-------CCCeEEEEECCCC
Confidence 999999999999998888888876643 257899999999999764 333443333321 1238999999999
Q ss_pred CccccchHHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~ 220 (224)
.|+++.+...+.....+
T Consensus 156 ~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 156 INVKQTFERLVDVICEK 172 (203)
T ss_dssp BSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99966555544444443
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=180.74 Aligned_cols=159 Identities=25% Similarity=0.280 Sum_probs=123.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++..+.+.. .+.+|.+.... .+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVD--SYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 457899999999999999999999888777 66777775543 344455 6789999999999988888889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++....|+..+.......++|+++|+||+|+.+. ...++..+..+. .+++++++||++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 154 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-------WNAAFLESSAKENQ 154 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-------TTCEEEECCTTSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH-------hCCcEEEEecCCCC
Confidence 999999999999999999988877655568999999999999654 334444443322 12389999999999
Q ss_pred ccccchHHHHHHH
Q psy12173 205 HHLHVSVVEAEQA 217 (224)
Q Consensus 205 gv~~~~~~~i~~~ 217 (224)
|+++.|...+..+
T Consensus 155 ~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 155 TAVDVFRRIILEA 167 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9955555444433
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=176.73 Aligned_cols=159 Identities=18% Similarity=0.218 Sum_probs=111.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHH-HHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRR-FWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~-~~~~~~~~~d~ii~ 128 (224)
.+||+++|++|+|||||++++.+..+.......++.+.....+..++ ..+.+|||||++++.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999998776653344455555566666654 6788999999998876 66667889999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++.....|+..+.......++|+++|+||+|+.+. ...++..+..+. . +++++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----L--SCKHIETSAALHHNT 154 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----T--TCEEEECBTTTTBSH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHH-----c--CCcEEEecCccCCCH
Confidence 9999999999999999999888755458999999999999743 444444433321 1 238999999999999
Q ss_pred ccchHHHHHHH
Q psy12173 207 LHVSVVEAEQA 217 (224)
Q Consensus 207 ~~~~~~~i~~~ 217 (224)
++.|...+...
T Consensus 155 ~~l~~~l~~~i 165 (169)
T 3q85_A 155 RELFEGAVRQI 165 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444433
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=186.55 Aligned_cols=160 Identities=15% Similarity=0.176 Sum_probs=122.4
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEe--CCeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQK--GEYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
..+..+||+++|++|+|||||++++.++.+.. .+.+|++..... +.. ....+.+|||+|++++...+..+++.+|
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCC--CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 33567999999999999999999999999877 777787755442 223 3478999999999999999999999999
Q ss_pred EEEEEEECCCCCCHHH-HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCc
Q psy12173 125 LLVFVVDSADPSKLPV-AAMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSR 189 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~ 189 (224)
++|+|+|+++++++.. ...|+..+.... .+.|+++|+||+|+.++ ...++..+..+
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~------- 171 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK------- 171 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-------
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-------
Confidence 9999999999999998 577777766553 58999999999999653 33333333322
Q ss_pred ccce-eEEEeecCCCCc-cccchHHHHHHHH
Q psy12173 190 QHRI-KLIATQAPSNLH-HLHVSVVEAEQAM 218 (224)
Q Consensus 190 ~~~~-~~~~~Sa~~~~g-v~~~~~~~i~~~l 218 (224)
..++ +|++|||++|.| +++.|...+..++
T Consensus 172 ~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 172 QLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 1234 899999999998 9665555544443
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=180.66 Aligned_cols=164 Identities=18% Similarity=0.255 Sum_probs=126.1
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEe--CCeEEEEEEcCCchhHHHHHHhhccC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQK--GEYTLNIFELGGQENVRRFWNTYFED 122 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ 122 (224)
......++|+++|++|+|||||+++|.+..+.. .+.++.+... ..+.. ....+.+|||||++++...+..+++.
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 97 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSH--DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCS--SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 344678999999999999999999999998877 5566666443 33444 34789999999999998888889999
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+|++|+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++....... . +++++++||
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa 169 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAEN-----N--GLLFLETSA 169 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEEECT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHHH-----c--CCEEEEEeC
Confidence 999999999999988888888888876643 257899999999999753 334444433321 1 238999999
Q ss_pred CCCCccccchHHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~~ 220 (224)
++|.|+++.+...+...+.+
T Consensus 170 ~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 170 LDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999966555555544444
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=179.65 Aligned_cols=163 Identities=15% Similarity=0.240 Sum_probs=125.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.+..++|+++|++|+|||||++++.+..+.. .+.++.+.. ...+... ...+.+|||||++++...+..+++.+|
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 96 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTP--AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCC--CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence 4567999999999999999999999998776 555665543 3444443 468999999999999888888999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+. ...++..+..+. .+++++++||++
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~ 168 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADD-------LGFEFFEASAKE 168 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHH-------cCCeEEEEECCC
Confidence 9999999999989988888888876653 257899999999999653 333444333321 123899999999
Q ss_pred CCccccchHHHHHHHHHHh
Q psy12173 203 NLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~~~ 221 (224)
|.|+++.+...+.....++
T Consensus 169 g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 169 NINVKQVFERLVDVICEKM 187 (189)
T ss_dssp TBSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999666655555554444
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=175.79 Aligned_cols=159 Identities=19% Similarity=0.281 Sum_probs=121.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|.+.... .+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 79 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 79 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCC--CCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEE
Confidence 356899999999999999999999988766 56666664443 344444 6899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+..+. ++++++++||++|.
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 80 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-------WNVNYVETSAKTRA 152 (168)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-------HTCEEEECCTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH-------cCCeEEEeCCCCCC
Confidence 999999999999999888888877654458999999999999653 344444444321 12389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.+. .+.+.+
T Consensus 153 gi~~l~~-~l~~~i 165 (168)
T 1u8z_A 153 NVDKVFF-DLMREI 165 (168)
T ss_dssp THHHHHH-HHHHHH
T ss_pred CHHHHHH-HHHHHH
Confidence 9955544 444443
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=174.50 Aligned_cols=161 Identities=18% Similarity=0.231 Sum_probs=122.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+.. ...+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 457899999999999999999999988776 566676644 34455555 689999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCC---CCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQR---LSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+++|+|+++++++.....|+..+..... ..+.|+++|+||+|+.+. ...++..+.... ... ++++++||+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~--~~~~~~Sa~ 156 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGD--YPYFETSAK 156 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTC--CCEEECCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----cCC--ceEEEEeCC
Confidence 9999999999888888888777765321 257899999999999743 445555444431 112 389999999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|+++.+...+...+
T Consensus 157 ~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 157 DATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999655554444433
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=178.59 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=124.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+.. ...+..+ ...+.+|||||++++...+..+++.+|+
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDP--ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 457899999999999999999999998877 566666543 3444554 4789999999999999888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
+|+|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+.... . +++++++||++|.
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-----H--SMLFIEASAKTCD 163 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-----T--TCEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-----c--CCEEEEecCCCCC
Confidence 9999999999999988888888876644467999999999999653 334444333321 1 2389999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++. ...+.+.+.
T Consensus 164 gi~~l-~~~l~~~~~ 177 (195)
T 1x3s_A 164 GVQCA-FEELVEKII 177 (195)
T ss_dssp THHHH-HHHHHHHHH
T ss_pred CHHHH-HHHHHHHHH
Confidence 99544 445554444
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-28 Score=184.79 Aligned_cols=163 Identities=19% Similarity=0.246 Sum_probs=121.4
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEe--CCeEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQK--GEYTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
+.....++|+++|++|+|||||++++.+..+.. .+.+|.+..... +.. ....+.+|||||++.+...+..+++.+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSE--GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCS--CCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 344578999999999999999999999998876 666777644422 222 458899999999999988888899999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
|++++|+|+++++++.....|+..+.......++|+++|+||+|+.+. ....+..+... ..+++++++||+
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~ 169 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-------SWGATFMESSAR 169 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-------HHTCEEEECCTT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-------HhCCeEEEEeCC
Confidence 999999999999999999999998887655567999999999999653 33333333322 112389999999
Q ss_pred CCCccccchHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~ 219 (224)
+|.|+++.|. .+.+.+.
T Consensus 170 ~~~~v~~l~~-~l~~~i~ 186 (201)
T 3oes_A 170 ENQLTQGIFT-KVIQEIA 186 (201)
T ss_dssp CHHHHHHHHH-HHHHHHH
T ss_pred CCCCHHHHHH-HHHHHHH
Confidence 9999955444 5544444
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=175.51 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=122.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.+|.+. ....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS--SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 467999999999999999999999998776 55566553 344445543 689999999999999999899999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 162 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRDVTYEEAKQFAEE-------NGLLFLEASAKTG 162 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTC
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHHH-------cCCEEEEEeCCCC
Confidence 9999999999999888888887766532 57899999999999643 334454444321 1238999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.|+++.+...+..
T Consensus 163 ~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 163 ENVEDAFLEAAKK 175 (179)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9995555444433
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=178.45 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=126.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|.+... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 467899999999999999999999988766 6666666443 3445554 5899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+..+. ++++++++||++|.
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-------WNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH-------hCCeEEEEeCCCCC
Confidence 999999999999999999888887654468999999999999753 344454444321 12389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.+...+..+.
T Consensus 163 gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 163 NVDKVFFDLMREIR 176 (206)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99655554444433
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=174.62 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=123.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..++|+++|++|+|||||++++.++.+.. .+.++.+.. ...+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 45899999999999999999999988776 555665533 33445554 56999999999999999888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|++++++++....++..+.......+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|.|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~g 152 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE-------WGCPFMETSAKSKTM 152 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-------HTSCEEEECTTCHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH-------hCCCEEEecCCCCcC
Confidence 99999999999999999888887655568999999999998643 333333333211 123899999999999
Q ss_pred cccchHHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAMY 219 (224)
Q Consensus 206 v~~~~~~~i~~~l~ 219 (224)
+ +++...+.+.+.
T Consensus 153 i-~~l~~~l~~~~~ 165 (167)
T 1kao_A 153 V-DELFAEIVRQMN 165 (167)
T ss_dssp H-HHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHh
Confidence 9 455555555443
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=177.48 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=123.1
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC----------------------------
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE---------------------------- 98 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~---------------------------- 98 (224)
.++.++|+++|++|+|||||+++|.+..+.. .+.+|++... ..+..++
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHE--NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCC--CcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 3567899999999999999999999998876 6667766433 3344433
Q ss_pred -----------eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 99 -----------YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 99 -----------~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
..+.+|||||++.+...+..+++.+|++++|+|+++++++.....|+..+.... +.|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC
Confidence 789999999999999888889999999999999999999999888888887753 499999999999
Q ss_pred CCC-CCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 168 VPG-ALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 168 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
+.. ....++..+.++. . +++++++||++|.|+++.+...+....
T Consensus 159 ~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQD-----N--NLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CC-CCSCHHHHHHHHHH-----T--TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHH-----c--CCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 432 2445555554432 1 238999999999999555554444443
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-27 Score=177.87 Aligned_cols=156 Identities=20% Similarity=0.295 Sum_probs=120.9
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHH-HHHHhhccC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVR-RFWNTYFED 122 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~-~~~~~~~~~ 122 (224)
..+..++|+++|++|+|||||++++.++.+.. .+.++.+ +....+..++ ..+.+|||||++++. ..+..+++.
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD--RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCS--SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 33567999999999999999999999988777 4555555 4445565654 689999999999998 788888999
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+|++|+|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+.... .+++++++||
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa 166 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADT-------HSMPLFETSA 166 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-------TTCCEEECCS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHH-------cCCEEEEEeC
Confidence 9999999999999999999899888877654468999999999999653 334443333221 1238999999
Q ss_pred CCC---CccccchHH
Q psy12173 201 PSN---LHHLHVSVV 212 (224)
Q Consensus 201 ~~~---~gv~~~~~~ 212 (224)
++| .|+++.|..
T Consensus 167 ~~~~~~~~i~~l~~~ 181 (189)
T 1z06_A 167 KNPNDNDHVEAIFMT 181 (189)
T ss_dssp SSGGGGSCHHHHHHH
T ss_pred CcCCcccCHHHHHHH
Confidence 999 888444443
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=181.88 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=118.7
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.+..++|+++|++|+|||||++++.++.+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQ--DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCc--cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 3578999999999999999999999988776 4555554 4455555655 78999999999998888888899999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++|+|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+. ....+..+..+. . ++++++|||++
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~SA~~ 171 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQE-----N--ELMFLETSALT 171 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEEECTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHHH-----c--CCEEEEEeCCC
Confidence 99999999999999988888888766533 57999999999999643 334444433321 1 23899999999
Q ss_pred CCccccchHHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~~ 220 (224)
|.|+++.+...+...+.+
T Consensus 172 g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 172 GENVEEAFLKCARTILNK 189 (200)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999966666555555443
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=175.21 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=121.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.++.+.. .+.++.+.. ...+..+ +..+.+|||||++++...+..+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHE--FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA 81 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence 457899999999999999999999988776 555666543 3344444 4789999999999999988889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... . +++++++||++|
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~g 153 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYADD-----N--SLLFMETSAKTS 153 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEECCTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccccCHHHHHHHHHH-----c--CCeEEEEeCCCC
Confidence 9999999999999999888888876532 57899999999998653 334444443321 1 238999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.|++ ++...+.+
T Consensus 154 ~gi~-~l~~~i~~ 165 (170)
T 1r2q_A 154 MNVN-EIFMAIAK 165 (170)
T ss_dssp TTHH-HHHHHHHH
T ss_pred CCHH-HHHHHHHH
Confidence 9994 44444433
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=179.35 Aligned_cols=160 Identities=16% Similarity=0.267 Sum_probs=117.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||+++|.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE--ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc--CCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 567899999999999999999999988776 4555555 4445555554 689999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+. ...++..+..+. ..++++++|||++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~~~SA~~g 174 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQ------ITGMRFCEASAKDN 174 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT------STTCEEEECBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHh------cCCCeEEEEeCCCC
Confidence 999999999999988888777665542 257999999999999653 334444333321 11238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|+++.+...+...+
T Consensus 175 ~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 175 FNVDEIFLKLVDDIL 189 (192)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999665555444443
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=175.06 Aligned_cols=158 Identities=18% Similarity=0.255 Sum_probs=123.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+ +....+... ...+.+|||||++++...+..+++.+|+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTT--TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC--cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 457899999999999999999999998777 4455555 444445554 3689999999999999888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|++++.+++....|+..+..... .+.|+++|+||+|+.+. ...++..+..+. . +++++++||++|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~g 159 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLDARKVTAEDAQTYAQE-----N--GLFFMETSAKTA 159 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----T--TCEEEECCSSSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccccCCHHHHHHHHHH-----c--CCEEEEEECCCC
Confidence 9999999999999999888888877532 57899999999999654 344555444321 1 238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|+ +++...+.+.+
T Consensus 160 ~gi-~~l~~~l~~~~ 173 (181)
T 2efe_B 160 TNV-KEIFYEIARRL 173 (181)
T ss_dssp TTH-HHHHHHHHHTC
T ss_pred CCH-HHHHHHHHHHH
Confidence 999 44444554443
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=181.90 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=92.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCc--eeEEEEEeC----CeEEEEEEcCCchhHHHHHHhhcc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEG--FNITILQKG----EYTLNIFELGGQENVRRFWNTYFE 121 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~--~~~~~~~~~~t~~--~~~~~~~~~----~~~~~l~D~~G~~~~~~~~~~~~~ 121 (224)
...++|+++|++|+|||||++++.+. .+.. .+.+|++ +....+.++ ...+.+|||||++.+...+..+++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK--DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp EEEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC--CCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 46789999999999999999999998 6665 5666765 455556665 568999999999999999999999
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCC---CCCHHHHHhhcCcccccCcccceeEE
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPG---ALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
.+|++|+|+|+++++++.....|+..+..... ..+.|+++|+||+|+.+ ....++..+..+. . +++++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----~--~~~~~ 168 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----N--TLDFF 168 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH-----T--TCEEE
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH-----c--CCEEE
Confidence 99999999999999999999988888877543 25789999999999976 2344454444321 1 13899
Q ss_pred EeecCC-CCccccchHHHHHHHH
Q psy12173 197 ATQAPS-NLHHLHVSVVEAEQAM 218 (224)
Q Consensus 197 ~~Sa~~-~~gv~~~~~~~i~~~l 218 (224)
+|||++ |.|+++.+...+....
T Consensus 169 ~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 169 DVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp ECCC-------CHHHHHHHHHHH
T ss_pred EeccCCCCcCHHHHHHHHHHHHH
Confidence 999999 9999665554444443
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-27 Score=178.47 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=124.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+.. .+.++.+.... .+.. ....+.+|||||++++...+..+++.+|+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH--NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT--TCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC--CcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 467999999999999999999999998776 56677765433 3333 45789999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC--CCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG--ALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+ ....++..+..+. . +++++++||++|
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 170 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAES-----I--GAIVVETSAKNA 170 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-----T--TCEEEECBTTTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH-----c--CCEEEEEeCCCC
Confidence 999999999999999988888876653 25789999999999974 3345555544421 1 238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|++ ++...+.+.+
T Consensus 171 ~gi~-~l~~~l~~~i 184 (192)
T 2fg5_A 171 INIE-ELFQGISRQI 184 (192)
T ss_dssp BSHH-HHHHHHHHTC
T ss_pred cCHH-HHHHHHHHHH
Confidence 9994 4444554433
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=172.17 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=109.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchh--HHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQEN--VRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~--~~~~~~~~~~~~d~i 126 (224)
+.++|+++|++|+|||||++++.+..+..... .+...+....+..++ ..+.+|||||++. +......+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46899999999999999999999988655211 122233344455554 5789999999988 455667788999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++.....|+..+.......++|+++|+||+|+.+. ...++...... ..++++++|||++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-------VFDCKFIETSATLQH 154 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-------HHTSEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-------HcCCeEEEEecCCCC
Confidence 999999999999999988888877544458999999999999764 33443333221 112389999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++.+ ..+.+.+.
T Consensus 155 gi~~l~-~~l~~~~~ 168 (175)
T 2nzj_A 155 NVAELF-EGVVRQLR 168 (175)
T ss_dssp SHHHHH-HHHHHHHH
T ss_pred CHHHHH-HHHHHHHH
Confidence 995544 45544443
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-27 Score=180.69 Aligned_cols=159 Identities=15% Similarity=0.175 Sum_probs=120.7
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
....++|+++|++|+|||||++++.+..+.. .+.+|.+..... +..++ ..+.+|||||++++...+..+++.+|+
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPT--AYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCC--ccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3567999999999999999999999998876 667777755443 33444 567999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCccccee-EEEee
Q psy12173 126 LVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIK-LIATQ 199 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~S 199 (224)
+++|+|+++++++... ..|+..+.... .+.|+++|+||+|+.++ ...++..+..+.. ++. ++++|
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~S 168 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL-------GCVAYIEAS 168 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH-------TCSCEEECB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc-------CCCEEEEee
Confidence 9999999999999987 44555554332 57999999999999743 3344444433221 125 99999
Q ss_pred cCCCCccccchHHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l 218 (224)
|++|.|+++.|...+..++
T Consensus 169 a~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 169 SVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999555554444443
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-27 Score=176.48 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=125.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|.+.... .+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC--cCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 467899999999999999999999988766 56666664443 344444 5899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++.....|+..+.......++|+++|+||+|+.+. ...++..+..+. ++++++++||++|.
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 166 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-------WNVNYVETSAKTRA 166 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-------cCCeEEEeCCCCCC
Confidence 999999999999999888888877654458999999999999653 344454444421 12389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.+...+..+.
T Consensus 167 gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 167 NVDKVFFDLMREIR 180 (187)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99555554444443
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=175.05 Aligned_cols=161 Identities=21% Similarity=0.248 Sum_probs=111.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeC---CeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKG---EYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..+ ...+.+|||||++.+...+..+++.+|
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ--QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT--TC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 457899999999999999999999988776 5555554 445555554 378999999999999999989999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcC---CCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQ---RLSTVPILVIANKQDVPGA---LSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
++++|+|+++++++.....|+..+.... ...+.|+++|+||+|+.+. ...++..+..+. ...++++++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~------~~~~~~~~~ 157 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS------LGDIPLFLT 157 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH------TTSCCEEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh------cCCCeEEEE
Confidence 9999999999999988888888776542 2257899999999999543 234444433321 112389999
Q ss_pred ecCCCCccccchHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l 218 (224)
||++|.|+++.+...+...+
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 158 SAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHH
Confidence 99999999555554444443
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=179.02 Aligned_cols=159 Identities=23% Similarity=0.298 Sum_probs=124.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||+++|.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN--DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT--TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 457899999999999999999999998877 5555555 4445555654 589999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+..+. . +++++++||++|
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~g 155 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-----N--KMPFLETSALDS 155 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----T--TCCEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-----c--CCeEEEEeCCCC
Confidence 999999999999999988888876653 257899999999999764 334444433321 1 238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|+++.+...+....
T Consensus 156 ~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIK 170 (206)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999655554444433
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-27 Score=176.67 Aligned_cols=160 Identities=18% Similarity=0.208 Sum_probs=124.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|++.... .+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVS--DYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCS--SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 457899999999999999999999998776 66777775543 344554 6889999999999988888889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++....... . +++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~Sa~~~~ 157 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-----H--HVAYFEASAKLRL 157 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEECBTTTTB
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----c--CCeEEEecCCCCC
Confidence 999999999999999999888866544468999999999999753 333443333211 1 2389999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
|+++.+. .+.+.+.
T Consensus 158 gv~~l~~-~l~~~~~ 171 (181)
T 2fn4_A 158 NVDEAFE-QLVRAVR 171 (181)
T ss_dssp SHHHHHH-HHHHHHH
T ss_pred CHHHHHH-HHHHHHH
Confidence 9955544 4444443
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=176.08 Aligned_cols=159 Identities=17% Similarity=0.199 Sum_probs=120.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..++|+++|++|+|||||++++.+..+.. .+.+|.+.. ...+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCC--CCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 46899999999999999999999988766 555655533 33344554 56888999999999999888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
+|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+.... .+++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARS-------YGIPFIETSAKTRQGV 153 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHH-------HTCCEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHH-------cCCeEEEEeCCCCCCH
Confidence 99999999999999999988887655568999999999999754 333333333221 1238999999999999
Q ss_pred ccchHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMY 219 (224)
Q Consensus 207 ~~~~~~~i~~~l~ 219 (224)
++.+ ..+.+.+.
T Consensus 154 ~~l~-~~l~~~~~ 165 (189)
T 4dsu_A 154 DDAF-YTLVREIR 165 (189)
T ss_dssp HHHH-HHHHHHHH
T ss_pred HHHH-HHHHHHHH
Confidence 5544 44444443
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-27 Score=174.23 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=114.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE--EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI--TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.+|.+... ..+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFND--KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCS--SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCc--CCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 457899999999999999999999988776 5556666443 4455443 689999999999999999889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.++ ...++..+..+. . +++++++||++|
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 153 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAES-----V--GAKHYHTSAKQN 153 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----T--TCEEEEEBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHH-----c--CCeEEEecCCCC
Confidence 999999999999998888887765532 147899999999999653 344444443321 1 238999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+++.+. .+.+.
T Consensus 154 ~gi~~l~~-~l~~~ 166 (170)
T 1z08_A 154 KGIEELFL-DLCKR 166 (170)
T ss_dssp BSHHHHHH-HHHHH
T ss_pred CCHHHHHH-HHHHH
Confidence 99955444 44443
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-27 Score=175.38 Aligned_cols=157 Identities=20% Similarity=0.281 Sum_probs=116.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+.++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 79 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGI 79 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEE
Confidence 45799999999999999999999988776 4555555 4445555544 6899999999999888888889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+..+. . +++++++||++|.|
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~g 151 (170)
T 1g16_A 80 ILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAKE-----L--GIPFIESSAKNDDN 151 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTCCSCHHHHHHHHHH-----H--TCCEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCCcCccCHHHHHHHHHH-----c--CCeEEEEECCCCCC
Confidence 999999999888888888888776532 57899999999999543 333443333221 1 23899999999999
Q ss_pred cccchHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAM 218 (224)
Q Consensus 206 v~~~~~~~i~~~l 218 (224)
+++.+. .+.+.+
T Consensus 152 v~~l~~-~l~~~~ 163 (170)
T 1g16_A 152 VNEIFF-TLAKLI 163 (170)
T ss_dssp HHHHHH-HHHHHH
T ss_pred HHHHHH-HHHHHH
Confidence 955554 444444
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-27 Score=180.35 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=112.3
Q ss_pred ccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhcc
Q psy12173 46 KVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFE 121 (224)
Q Consensus 46 ~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~ 121 (224)
.......++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 99 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE--NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFR 99 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHH
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCc--cCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHh
Confidence 3444567999999999999999999999988776 4555555 3444555544 67999999999999999988999
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC--------CCCHHHHHhhcCcccccCcccce
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG--------ALSAEEVGVALDLSSISSRQHRI 193 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~ 193 (224)
.+|++|+|+|+++++++.....|+..+..... .+.|+++|+||+|+.+ ....++..+... ..++
T Consensus 100 ~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~-------~~~~ 171 (199)
T 2p5s_A 100 KADGVLLLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM-------TYGA 171 (199)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH-------HHTC
T ss_pred hCCEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccccccccCHHHHHHHHH-------HcCC
Confidence 99999999999999999888888777655422 4789999999999852 122333322221 1123
Q ss_pred eEEEeecCCCCccccchHHHHH
Q psy12173 194 KLIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 194 ~~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
+++++||++|.|+++.+...+.
T Consensus 172 ~~~~~SA~~g~gv~el~~~l~~ 193 (199)
T 2p5s_A 172 LFCETSAKDGSNIVEAVLHLAR 193 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHH
Confidence 8999999999999555554443
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-27 Score=178.55 Aligned_cols=163 Identities=23% Similarity=0.220 Sum_probs=120.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CCCCCCceeEEEEEe-----CCeEEEEEEcCCchhHHH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSH---------NLKPTEGFNITILQK-----GEYTLNIFELGGQENVRR 114 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~---------~~~~t~~~~~~~~~~-----~~~~~~l~D~~G~~~~~~ 114 (224)
....+||+++|++|+|||||++.+.+.. .... .+.+|.+.+...... ....+.+|||||++++..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 3567999999999999999997666543 4311 123344444333221 347899999999999999
Q ss_pred HHHhhccCCCEEEEEEECC------CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC
Q psy12173 115 FWNTYFEDTDLLVFVVDSA------DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS 188 (224)
Q Consensus 115 ~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 188 (224)
.+..+++.+|++|+|+|++ +.+++..+..|+..+. ....+.|+++|+||+|+.+....++..+.++..
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~---- 163 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE---- 163 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT----
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHhc----
Confidence 9999999999999999999 4456666666666662 233689999999999998887888887776532
Q ss_pred cccce-eEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 189 RQHRI-KLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 189 ~~~~~-~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
++ +++++||++|.|+++.|...+...+.+.
T Consensus 164 ---~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 164 ---GKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp ---CCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 23 7999999999999666655555554443
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=171.98 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=120.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.++|+++|++|+|||||++++.+..+.. .+.++.+.. ...+...+ ..+.+|||||++++...+..+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDP--NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 456899999999999999999999998776 566666644 33444543 789999999999999888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|++++.++.....|+..+.... .+..|+++|+||+|+.+. ...++..+..+. . +++++++||++|
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 153 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYADS-----I--HAIFVETSAKNA 153 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----T--TCEEEECBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECCccccccccCHHHHHHHHHH-----c--CCEEEEEeCCCC
Confidence 999999999999998888888776642 267899999999999653 233333333221 1 238999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.|+++ +...+.+
T Consensus 154 ~~i~~-l~~~i~~ 165 (170)
T 1z0j_A 154 ININE-LFIEISR 165 (170)
T ss_dssp BSHHH-HHHHHHH
T ss_pred cCHHH-HHHHHHH
Confidence 99944 4444444
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=172.18 Aligned_cols=151 Identities=21% Similarity=0.268 Sum_probs=118.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+.++|+++|++|+|||||++++.++.+.. .+.++.+.. ...+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 79 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE--NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAA 79 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEE
Confidence 45899999999999999999999998776 556666643 34455543 6899999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-----CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-----LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... .+++++++||+
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~ 151 (170)
T 1ek0_A 80 LVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE-------KGLLFFETSAK 151 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-------HTCEEEECCTT
T ss_pred EEEEecCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCccccccccCCCHHHHHHHHHH-------cCCEEEEEeCC
Confidence 999999999999999888888876542 57899999999999643 223333322211 12389999999
Q ss_pred CCCccccchH
Q psy12173 202 SNLHHLHVSV 211 (224)
Q Consensus 202 ~~~gv~~~~~ 211 (224)
+|.|+++.+.
T Consensus 152 ~~~gi~~l~~ 161 (170)
T 1ek0_A 152 TGENVNDVFL 161 (170)
T ss_dssp TCTTHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9999954443
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=172.30 Aligned_cols=160 Identities=17% Similarity=0.274 Sum_probs=114.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+... .+.+|++.... .+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 4678999999999999999999999887431 34556664443 334454 589999999999999999899999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+. ...++..+..+. . +++++++||++|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 158 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAKE-----Y--GLPFMETSAKTG 158 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHHH-----H--TCCEEECCTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHHH-----c--CCeEEEEeCCCC
Confidence 9999999999888888888888776533 57899999999999764 234444333221 1 238999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.|+++.+ ..+.+.+.
T Consensus 159 ~gi~~l~-~~l~~~~~ 173 (180)
T 2g6b_A 159 LNVDLAF-TAIAKELK 173 (180)
T ss_dssp TTHHHHH-HHHHHHHH
T ss_pred CCHHHHH-HHHHHHHH
Confidence 9995544 44444443
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-27 Score=176.76 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=120.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC---eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE---YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
++.++|+++|++|+|||||++++.++.+.. .+.+|++ +....+...+ ..+.+|||||++.+...+..+++.+|
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 81 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGK--QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ 81 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTH--HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCC--CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence 457899999999999999999999988765 4556655 5556666654 79999999999999888888999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCC-CCCCc-EEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQR-LSTVP-ILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p-iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
++++|+|++++++++....|+..+..... ..+.| +++|+||+|+.+. ...++..+..+. . +++++++||
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa 154 (178)
T 2hxs_A 82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-----N--GFSSHFVSA 154 (178)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----H--TCEEEEECT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH-----c--CCcEEEEeC
Confidence 99999999999888888888777655310 01445 8999999999753 334444333321 1 238999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
++|.|+++.+ ..+.+.+.
T Consensus 155 ~~~~gi~~l~-~~l~~~~~ 172 (178)
T 2hxs_A 155 KTGDSVFLCF-QKVAAEIL 172 (178)
T ss_dssp TTCTTHHHHH-HHHHHHHT
T ss_pred CCCCCHHHHH-HHHHHHHH
Confidence 9999995544 45544443
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-27 Score=173.14 Aligned_cols=156 Identities=19% Similarity=0.292 Sum_probs=121.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..++|+++|++|+|||||++++.+..+.. .+.+|.+ +....+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK--DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 56899999999999999999999988776 5566655 4444555543 6899999999999888888889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++....|+..+.... .+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 152 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-------LKLRFYRTSVKEDL 152 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-------HTCEEEECBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHH-------cCCeEEEEecCCCC
Confidence 99999999988888888888876653 57899999999999653 334444443321 12389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.+. .+.+.+
T Consensus 153 ~i~~l~~-~l~~~~ 165 (168)
T 1z2a_A 153 NVSEVFK-YLAEKH 165 (168)
T ss_dssp SSHHHHH-HHHHHH
T ss_pred CHHHHHH-HHHHHH
Confidence 9954444 444443
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=176.52 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=122.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.++.+.. .+.+|.+..... +..++ ..+.+|||||++. ...+..+++.+|++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW--EYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 457899999999999999999999998876 666777654433 44443 6799999999988 66777788999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++....|+..+.......+.|+++|+||+|+.+. ...++..+..+. .++++++|||++|.
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-------LACAFYECSACTGE 175 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-------HTSEEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-------hCCeEEEECCCcCC
Confidence 999999999999988888888776544468999999999999753 334444333321 12389999999999
Q ss_pred -ccccchHHHHHHHH
Q psy12173 205 -HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 -gv~~~~~~~i~~~l 218 (224)
|+++.|...+...+
T Consensus 176 ~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 176 GNITEIFYELCREVR 190 (196)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 99655555444443
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=176.97 Aligned_cols=158 Identities=19% Similarity=0.271 Sum_probs=120.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+ +....+.+++ ..+.+|||||++.+...+..+++.+|+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC--SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 456899999999999999999999988776 4555554 4555566666 789999999999998888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
+++|+|++++.++.....|+..+..... .+.|+++|+||+|+... ...++..+..+. .+++++++||++|.
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAKE-------LGIPFIESSAKNDD 167 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCSSCCSCHHHHHHHHHH-------HTCCEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCcccccCHHHHHHHHHH-------cCCEEEEEeCCCCC
Confidence 9999999999888888888887766532 47899999999999543 333333333211 12389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|+++.+. .+.+.+
T Consensus 168 gi~~l~~-~l~~~~ 180 (213)
T 3cph_A 168 NVNEIFF-TLAKLI 180 (213)
T ss_dssp SSHHHHH-HHHHHH
T ss_pred CHHHHHH-HHHHHH
Confidence 9955554 444443
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=175.39 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=118.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.+..+.. .+.+|++... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPE--EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCC--SCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 467899999999999999999999998776 6667766443 3344444 7899999999999998888899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCccc
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSRQH 191 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 191 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+. ...++..+..+ ..
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~ 164 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK-------EI 164 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH-------HH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHH-------Hc
Confidence 9999999999999887 5666665542 47999999999999764 12222222111 11
Q ss_pred ce-eEEEeecCCCCccccchHHHHHH
Q psy12173 192 RI-KLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 192 ~~-~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
++ +|++|||++|.|+++.+...+..
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 22 79999999999995555544443
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=172.21 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=112.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.++.+.. .+.+|.+... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCcc--ccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 567899999999999999999999988766 5556655433 3344444 6699999999999999888999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++..+..+. .+++++++||++|.|
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~g 169 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-------YGIPFIETSAKTRQG 169 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-------HTCCEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-------cCCeEEEEeCCCCCC
Confidence 999999999899888888877766543357999999999999763 344444444321 123899999999999
Q ss_pred cccchHHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAMY 219 (224)
Q Consensus 206 v~~~~~~~i~~~l~ 219 (224)
+++.+. .+.+.+.
T Consensus 170 i~~l~~-~l~~~~~ 182 (190)
T 3con_A 170 VEDAFY-TLVREIR 182 (190)
T ss_dssp HHHHHH-HHHHHHH
T ss_pred HHHHHH-HHHHHHH
Confidence 955444 4444443
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=179.17 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=119.8
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.....+||+++|++|+|||||++++.+..+.. .+.+|.+.... .+..+ ...+.+|||||++.+...+..+++.+|
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 34567999999999999999999999998876 66677764443 33333 478999999999999988888999999
Q ss_pred EEEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCc
Q psy12173 125 LLVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSR 189 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~ 189 (224)
++|+|+|+++++++... ..|+..+.... .+.|+++|+||+|+.++ ...++..+..+.
T Consensus 102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------ 173 (205)
T 1gwn_A 102 AVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ------ 173 (205)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH------
Confidence 99999999999999888 56666665542 57999999999999742 222322222211
Q ss_pred ccceeEEEeecC-CCCccccchHHHHHHHH
Q psy12173 190 QHRIKLIATQAP-SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 190 ~~~~~~~~~Sa~-~~~gv~~~~~~~i~~~l 218 (224)
...++|++|||+ +|.|+++.|...+..++
T Consensus 174 ~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 174 IGAATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp HTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 001389999999 68999666665555544
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=174.06 Aligned_cols=157 Identities=21% Similarity=0.308 Sum_probs=121.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+.. .+.++.+ +....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 456899999999999999999999988777 5556665 4444555555 689999999999999888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... .+++++++||++|
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 161 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-------LNVMFIETSAKAG 161 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECGGGGGGCCSCHHHHHHHHHH-------HTCEEEEEBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccCcCCHHHHHHHHHH-------cCCeEEEEeCCCC
Confidence 9999999999889888888888766432 57899999999999653 334444333321 1238999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+ +++...+.+.
T Consensus 162 ~~i-~~l~~~l~~~ 174 (179)
T 2y8e_A 162 YNV-KQLFRRVAAA 174 (179)
T ss_dssp BSH-HHHHHHHHHT
T ss_pred CCH-HHHHHHHHHH
Confidence 999 4444455443
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=177.35 Aligned_cols=162 Identities=14% Similarity=0.217 Sum_probs=113.4
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.....++|+++|++|+|||||++++.+..+.. .+.+|++.... .+..++ ..+.+|||||++++...+..+++++|
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPT--EYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 34567999999999999999999999988776 66677764443 344555 57889999999999888888999999
Q ss_pred EEEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCc
Q psy12173 125 LLVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSR 189 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~ 189 (224)
++++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+. ...++.....+.. .
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~ 167 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI----K 167 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH----T
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc----C
Confidence 999999999999999886 5666665543 48999999999999653 2222222222110 1
Q ss_pred ccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
. .+|++|||++|.|+++.|...+...+.
T Consensus 168 ~--~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 168 A--ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp C--SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred C--cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 1 289999999999996655555544443
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=170.03 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=113.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..+||+++|++|+|||||++++.++.+.. +.+|.+.. ...+..++ ..+.+|||||+++. .+++++|++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~d~~ 76 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV 76 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCCH-----HHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCchh-----HHHHhCCEE
Confidence 467899999999999999999999988764 34565533 33455544 67899999999873 357789999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhc--CCCCCCcEEEEEeCCCCCC----CCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGD--QRLSTVPILVIANKQDVPG----ALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
++|+|+++++++.....|+..+... ....+.|+++|+||+|+.. ....++..+.... ..++++++|||
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~------~~~~~~~~~Sa 150 (178)
T 2iwr_A 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD------MKRCSYYETXA 150 (178)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH------HSSEEEEEEBT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh------hcCCeEEEEec
Confidence 9999999999999988865444332 1225789999999999942 2344444443321 11238999999
Q ss_pred CCCCccccchHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~ 219 (224)
++|.|+++.|...+...+.
T Consensus 151 ~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 151 TYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999996666555544443
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=176.61 Aligned_cols=161 Identities=20% Similarity=0.271 Sum_probs=122.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+.. ...+..++ ..+.+|||||++.+...+..+++.+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 457899999999999999999999998776 556666544 33444443 789999999999998888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCC---CCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQR---LSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+|+|+|+++++++.....|+..+..... ..+.|+++|+||+|+.+. ...++..+.... ... ++++++||+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~--~~~~~~Sa~ 157 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS----KNN--IPYFETSAK 157 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----TTS--CCEEECBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh----cCC--ceEEEEeCC
Confidence 9999999999888888888877765421 146899999999999743 334444443321 122 389999999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|+++.+...+...+
T Consensus 158 ~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 158 EAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999655554444443
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-26 Score=168.22 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=120.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+.++|+++|++|+|||||++++.+..+.. .+.++.+... ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVD--ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 35799999999999999999999988766 5556665433 3344443 67899999999998888888899999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
+|+|+++++++.....|+..+.......+.|+++++||+|+.+. ...++..+..+. .+++++++||++|.|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi 152 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARS-------YGIPYIETSAKTRQGV 152 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-------HTCCEEEECTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHH-------cCCeEEEecCCCCCCH
Confidence 99999999898888888888766543357999999999999763 334443333321 1238999999999999
Q ss_pred ccchHHHHHHHH
Q psy12173 207 LHVSVVEAEQAM 218 (224)
Q Consensus 207 ~~~~~~~i~~~l 218 (224)
++ +...+.+.+
T Consensus 153 ~~-l~~~l~~~~ 163 (166)
T 2ce2_X 153 ED-AFYTLVREI 163 (166)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 44 444444443
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=181.34 Aligned_cols=158 Identities=20% Similarity=0.227 Sum_probs=117.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||+++|.+..+.. .+.+|.+ +....+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM--DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 467899999999999999999999998877 4445554 4555566665 789999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+. ...++..+..+. . +++++++||++|
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-----N--QLLFTETSALNS 160 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-----T--TCEEEECCCC-C
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH-----c--CCEEEEEeCCCC
Confidence 999999999999999988888876653 257899999999999653 334444433321 1 238999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+++.|...+...
T Consensus 161 ~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 161 ENVDKAFEELINTI 174 (223)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99955554444433
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=175.29 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=118.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.+..+.. .+.+|.+.... .+..+ ...+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 456899999999999999999999998876 66677664432 33333 47899999999999988888899999999
Q ss_pred EEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCccc
Q psy12173 127 VFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSRQH 191 (224)
Q Consensus 127 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 191 (224)
++|+|+++++++... ..|+..+.... .+.|+++|+||+|+.++ ...++..+..+. ..
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~ 154 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ------IG 154 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH------HT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH------cC
Confidence 999999999999888 55666555432 57999999999999742 223333222211 00
Q ss_pred ceeEEEeecC-CCCccccchHHHHHHHH
Q psy12173 192 RIKLIATQAP-SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 192 ~~~~~~~Sa~-~~~gv~~~~~~~i~~~l 218 (224)
.++|++|||+ +|.|+++.|...+..++
T Consensus 155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 155 AATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp CSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 1389999999 68999666655554443
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-27 Score=177.46 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=117.0
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
....+||+++|++|+|||||++++.++.+.. .+.+|++..+. ....+ ...+.+|||||+++++.. ..+++.+|+
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFIS--EYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCc--ccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 3567999999999999999999999998776 67777775432 33343 368899999999987764 457899999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCC--CCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeec-
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQR--LSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQA- 200 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa- 200 (224)
+++|+|+++++++..+..|+..+..... ..+.|+++|+||+|+.+. ...++..+.... .++++++|||
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~e~Sa~ 167 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR-------FGCLFFEVSAC 167 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-------HTCEEEECCSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-------cCCcEEEEeec
Confidence 9999999999999999988888766421 147899999999999643 344444443321 1238999999
Q ss_pred CCCCccccchHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~ 216 (224)
++|.|+++.|...+..
T Consensus 168 ~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 168 LDFEHVQHVFHEAVRE 183 (187)
T ss_dssp SCSHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHH
Confidence 8999996555544443
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=178.08 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=121.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---CC--eEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---GE--YTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~--~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
...++|+++|++|+|||||++++.++.+.. .+.+|.+........ .+ ..+.+|||||++.+...+..++..+|
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEK--NYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTC--EEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 457899999999999999999999888776 666777755554443 12 78999999999998888888899999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++|+|+|++++.++.....|+..+..... .+.|+++|+||+|+.+. ...++..+.... . ++++++|||++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~ 158 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKISKKLVMEVLKG-----K--NYEYFEISAKT 158 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CCHHHHHHHTTT-----C--CCEEEEEBTTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHHHHHHH-----c--CCcEEEEecCC
Confidence 99999999999999888888877766432 46899999999999764 334444443332 2 23899999999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+++ +...+.+.+.
T Consensus 159 g~gv~~-l~~~l~~~~~ 174 (218)
T 4djt_A 159 AHNFGL-PFLHLARIFT 174 (218)
T ss_dssp TBTTTH-HHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHh
Confidence 999954 4455555554
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=168.95 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=117.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
...++|+++|++|+|||||++++.+..+........+..+....+..++..+.+|||||++++...+..+++.+|++++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 85 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILV 85 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEE
Confidence 35689999999999999999999998877633333344555666777888999999999999888888888999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCccc--ceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQH--RIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~ 207 (224)
+|++++.... ....+..+.. .+.|+++|+||+|+.+. ..++..+.++........+ .+++++|||++|.|+
T Consensus 86 ~d~~~~~~~~-~~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv- 158 (178)
T 2lkc_A 86 VAADDGVMPQ-TVEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL- 158 (178)
T ss_dssp EETTCCCCHH-HHHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH-
T ss_pred EECCCCCcHH-HHHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH-
Confidence 9999864433 3334443322 47899999999999764 3344444433222111122 258999999999999
Q ss_pred cchHHHHHHHHH
Q psy12173 208 HVSVVEAEQAMY 219 (224)
Q Consensus 208 ~~~~~~i~~~l~ 219 (224)
+++...+.+.+.
T Consensus 159 ~~l~~~l~~~~~ 170 (178)
T 2lkc_A 159 DHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 555555555544
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-26 Score=173.60 Aligned_cols=165 Identities=18% Similarity=0.211 Sum_probs=117.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...+||+++|++|+|||||++++.+..+.. .+.+|++... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCS--SCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 467899999999999999999999998876 5566665433 3344544 6899999999999998888899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc-------Ccccce-eEEE
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS-------SRQHRI-KLIA 197 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~ 197 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.....+........... ....++ ++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 9999999998998884 4544444332 479999999999997652111111000000000 001112 7999
Q ss_pred eecCCCCccccchHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
|||++|.|+ +++...+.+.+.
T Consensus 179 ~SA~~g~gi-~~l~~~i~~~~l 199 (201)
T 2gco_A 179 CSAKTKEGV-REVFEMATRAGL 199 (201)
T ss_dssp CCTTTCTTH-HHHHHHHHHHHH
T ss_pred eeCCCCCCH-HHHHHHHHHHHh
Confidence 999999999 444455555443
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-27 Score=183.30 Aligned_cols=160 Identities=18% Similarity=0.271 Sum_probs=121.8
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEE--e--CCeEEEEEEcCCchhHHHHHHhhccCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ--K--GEYTLNIFELGGQENVRRFWNTYFEDT 123 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~l~D~~G~~~~~~~~~~~~~~~ 123 (224)
.....+||+++|++|+|||||++++..+.+.. .+.++.+....... . ....+.+|||||++.+...+..+++.+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTC--EEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34567999999999999999999987776665 55666665544433 3 347899999999999988888889999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|++++|+|++++.++.....|+..+.... .++|+++|+||+|+.+.....+..+.. ...++++++|||++|
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~ 159 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFH-------RKKNLQYYDISAKSN 159 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHH-------HHHTCEEEECBGGGT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHH-------HHcCCEEEEEeCCCC
Confidence 99999999999999999988888887763 489999999999997653222111111 112238999999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.|+++.|. .+.+.+.
T Consensus 160 ~gi~~l~~-~l~~~l~ 174 (221)
T 3gj0_A 160 YNFEKPFL-WLARKLI 174 (221)
T ss_dssp BTTTHHHH-HHHHHHH
T ss_pred CCHHHHHH-HHHHHHH
Confidence 99955554 4444443
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=173.21 Aligned_cols=125 Identities=28% Similarity=0.341 Sum_probs=95.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeC---CeEEEEEEcCCchhHHH-HHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG---EYTLNIFELGGQENVRR-FWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~D~~G~~~~~~-~~~~~~~~~d~ 125 (224)
...++|+++|++|+|||||++++.++.+.. .+. ++......+.++ +..+.+|||||++++.. .+..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD--TQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCC--BCC-CCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccc--ccC-CcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 356899999999999999999999988776 443 344455556665 68899999999999998 77888999999
Q ss_pred EEEEEECCCCC-CHHHHHHHHHHHHhc--CCCCCCcEEEEEeCCCCCCCCCHHHH
Q psy12173 126 LVFVVDSADPS-KLPVAAMELKNLLGD--QRLSTVPILVIANKQDVPGALSAEEV 177 (224)
Q Consensus 126 ii~v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~ 177 (224)
+++|+|+++.+ ++.....++..++.. ....+.|+++|+||+|+.+....++.
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 136 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLI 136 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHH
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHH
Confidence 99999999843 355566666665443 12247899999999999877555443
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-26 Score=175.58 Aligned_cols=166 Identities=17% Similarity=0.242 Sum_probs=113.5
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
.+..++|+++|++|+|||||++++.+..+.. .+.+|++... ..+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 3567899999999999999999999988776 5566666443 3344544 689999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHH-HHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc-------Ccccce-eEE
Q psy12173 126 LVFVVDSADPSKLPVA-AMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS-------SRQHRI-KLI 196 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~ 196 (224)
+++|+|+++++++... ..|+..+.... .+.|+++|+||+|+.+.....+....+...... ....++ +++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL 177 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE
Confidence 9999999999888888 44555554432 579999999999997652111111111000000 001112 799
Q ss_pred EeecCCCCccccchHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
+|||++|.|+++.+...+..++
T Consensus 178 ~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 178 ECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999555554444433
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-26 Score=177.96 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=118.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
....++|+++|++|+|||||++++..+.+.. .+.+|++.... .+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 3467899999999999999999999998876 66677764433 344443 789999999999999888889999999
Q ss_pred EEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC----------CHHHHHhhcCcccccCccccee
Q psy12173 126 LVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGAL----------SAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
+|+|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.. ..++..+..+.. .. .+
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~----~~--~~ 155 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI----GA--AA 155 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH----TC--SE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc----CC--ce
Confidence 99999999999999886 5666665542 479999999999986542 233332222110 11 28
Q ss_pred EEEeecCCCCccccchHHHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
|++|||++|.|+++.|...+...
T Consensus 156 ~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 156 YIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEccCCCCCCHHHHHHHHHHHH
Confidence 99999999999955555444443
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=171.73 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=114.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCC--eEEEEEEcCCchh-HHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGE--YTLNIFELGGQEN-VRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~--~~~~l~D~~G~~~-~~~~~~~~~~~~d~ 125 (224)
...+||+++|++|+|||||++++.+........+.+ +.++....+.+++ ..+.+|||+|++. ++.....+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456899999999999999999999754321112222 2223344555655 4678999999887 45566677889999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|||++++++|+....|+..+.......++|+++|+||+|+.+. ...++...... ..+++|++|||++|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~-------~~~~~~~e~SAk~g 187 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV-------VFDCKFIETSAAVQ 187 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH-------HHTCEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH-------HcCCEEEEEeCCCC
Confidence 9999999999999999888887765432357999999999999643 33333222111 11238999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+++.|...+...
T Consensus 188 ~~v~elf~~l~~~i 201 (211)
T 2g3y_A 188 HNVKELFEGIVRQV 201 (211)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99966665555444
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-26 Score=175.69 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=100.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.++.+.. .+.+|.+... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 356899999999999999999999988766 5566665433 3344444 5899999999999999998899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccc-------cCcccce-eEEE
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSI-------SSRQHRI-KLIA 197 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~ 197 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.....+..+....... .....++ ++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence 9999999999998886 5666655432 57999999999999765221111110000000 0011122 8999
Q ss_pred eecCCCCccccchHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
|||++|.|+++.|...+..++.
T Consensus 188 ~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 188 CSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999996655555554443
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-26 Score=171.24 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=116.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..++|+++|++|+|||||++++.++.+.. .+.+|++... ..+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCC--CcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 467899999999999999999999988776 5566665433 2344444 6778999999999998888899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--------------HHHHHhhcCcccccCccc
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALS--------------AEEVGVALDLSSISSRQH 191 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~ 191 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+... .++..+.. ...
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~ 151 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA-------KEI 151 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH-------HHT
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH-------Hhc
Confidence 9999999999998887 4666655442 3799999999999965421 11111111 011
Q ss_pred ce-eEEEeecCCCCccccchHHHHHHHHH
Q psy12173 192 RI-KLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 192 ~~-~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++ ++++|||++|.|+++ +...+.+.+.
T Consensus 152 ~~~~~~~~Sa~~g~gi~~-l~~~l~~~~~ 179 (186)
T 1mh1_A 152 GAVKYLECSALTQRGLKT-VFDEAIRAVL 179 (186)
T ss_dssp TCSEEEECCTTTCTTHHH-HHHHHHHHHS
T ss_pred CCcEEEEecCCCccCHHH-HHHHHHHHHh
Confidence 22 899999999999954 4445544443
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=172.06 Aligned_cols=159 Identities=15% Similarity=0.180 Sum_probs=119.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.++.+.. .+.+|.+..... ...+ ...+.+|||||++++...+..+++.+|++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 356899999999999999999999988776 566776654433 3333 36899999999999999888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++....++..+..... ..+.|+++|+||+|+.+. ...++...... .++++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~ 156 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-------EWKCAFMETSAKMNY 156 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-------HHTCEEEECBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-------HhCCeEEEEecCCCC
Confidence 999999999888888777766554321 247899999999999764 33333333221 112389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
|++ ++...+.+.+
T Consensus 157 gi~-~l~~~l~~~~ 169 (199)
T 2gf0_A 157 NVK-ELFQELLTLE 169 (199)
T ss_dssp SHH-HHHHHHHHHC
T ss_pred CHH-HHHHHHHHHH
Confidence 994 4444554443
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=167.82 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=117.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.++|+++|++|+|||||++++.++.+.. .+.++.+..... ...+ ...+.+|||||++++...+..+++.+|++++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE--SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS--SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 5799999999999999999999988776 566676654433 3333 3679999999999999988888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
|+|++++++++....++..+.... ...+.|+++|+||+|+.+. ....+...... .++++++++||++|.|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~~~Sa~~~~g 153 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-------TWKCAFMETSAKLNHN 153 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-------HHTCEEEECBTTTTBS
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-------HhCCeEEEecCCCCcC
Confidence 999999988888888877766532 2247899999999998653 23333322221 1123899999999999
Q ss_pred cccchHHHHHHH
Q psy12173 206 HLHVSVVEAEQA 217 (224)
Q Consensus 206 v~~~~~~~i~~~ 217 (224)
+ +++...+.+.
T Consensus 154 i-~~l~~~l~~~ 164 (172)
T 2erx_A 154 V-KELFQELLNL 164 (172)
T ss_dssp H-HHHHHHHHHT
T ss_pred H-HHHHHHHHHH
Confidence 9 4455455443
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=173.64 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=113.6
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
....++|+++|++|+|||||++++..+.+.. .+.+|++.... .+..++ ..+.+|||||++++...+..+++.+|+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC---CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCC--CcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 3567999999999999999999999988776 55666653332 333443 667799999999999988889999999
Q ss_pred EEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccc--------cCcccceeEE
Q psy12173 126 LVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSI--------SSRQHRIKLI 196 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 196 (224)
+++|+|+++++++.... .|+..+.... .++|+++|+||+|+.+.....+.......... .......+++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 99999999999999887 5555555443 57999999999999765221111111110000 0011112699
Q ss_pred EeecCCCCccccchHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~ 215 (224)
+|||++|.|+++.+ ..+.
T Consensus 183 ~~SA~~g~gi~~l~-~~l~ 200 (204)
T 4gzl_A 183 ECSALTQRGLKTVF-DEAI 200 (204)
T ss_dssp ECCTTTCTTHHHHH-HHHH
T ss_pred EeeCCCCCCHHHHH-HHHH
Confidence 99999999995444 4443
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=174.08 Aligned_cols=156 Identities=16% Similarity=0.141 Sum_probs=106.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++..+.+.. .+.+|++.... .+.. ....+.+|||||++++...+..+++++|++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 457899999999999999999999988766 55566553221 1222 346677999999999998888899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC------------CHHHHHhhcCcccccCcccc-
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGAL------------SAEEVGVALDLSSISSRQHR- 192 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~- 192 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.. ..++..+..+ ..+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~ 154 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK-------LIGA 154 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH-------HHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH-------HcCC
Confidence 9999999999998887 4666555442 479999999999986542 1222222211 111
Q ss_pred eeEEEeecCCCCccccchHHHHHHH
Q psy12173 193 IKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 193 ~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
.++++|||++|.|+++.+. .+.+.
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~-~l~~~ 178 (182)
T 3bwd_D 155 PAYIECSSKSQENVKGVFD-AAIRV 178 (182)
T ss_dssp SEEEECCTTTCTTHHHHHH-HHHHH
T ss_pred CEEEEEECCCCCCHHHHHH-HHHHH
Confidence 2899999999999955444 44443
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-26 Score=171.72 Aligned_cols=160 Identities=17% Similarity=0.210 Sum_probs=110.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCCCceeEEEEEe-------CCeEEEEEEcCCchhHHHHHHhhccC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQK-------GEYTLNIFELGGQENVRRFWNTYFED 122 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~--~~~~~~~~~~t~~~~~~~~~~-------~~~~~~l~D~~G~~~~~~~~~~~~~~ 122 (224)
.+||+++|++|+|||||++++.+. .+.. .+.+|++........ ....+.+|||+|++++...+..++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~--~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 79 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLG--MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQ 79 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCC--CcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccC
Confidence 479999999999999999999985 3333 556777766544332 35789999999999998888888899
Q ss_pred CCEEEEEEECCCC-CCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH----HHHhhcCcccccCccc--ceeE
Q psy12173 123 TDLLVFVVDSADP-SKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE----EVGVALDLSSISSRQH--RIKL 195 (224)
Q Consensus 123 ~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~--~~~~ 195 (224)
++++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+..... +..+.+. ..... ..++
T Consensus 80 ~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 153 (184)
T 2zej_A 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELL----NKRGFPAIRDY 153 (184)
T ss_dssp SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT----TCTTSCEEEEE
T ss_pred CcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHH----HhcCCcchhhe
Confidence 9999999999998 46888888888876542 478999999999997642211 1112221 01111 0139
Q ss_pred EEeecCCCC-ccccchHHHHHHHHHH
Q psy12173 196 IATQAPSNL-HHLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~-gv~~~~~~~i~~~l~~ 220 (224)
+++||++|. |+ +.+...+.+.+.+
T Consensus 154 ~~~Sa~~~~~~~-~~l~~~i~~~~~~ 178 (184)
T 2zej_A 154 HFVNATEESDAL-AKLRKTIINESLN 178 (184)
T ss_dssp EECCTTSCCHHH-HHHHHHHHHHHHC
T ss_pred EEEecccCchhH-HHHHHHHHHHHhc
Confidence 999999997 88 5555566555543
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-27 Score=180.91 Aligned_cols=152 Identities=21% Similarity=0.263 Sum_probs=110.2
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
....++|+++|++|+|||||+++|.+..+........+..+....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35679999999999999999999999887762222223445566666665 6899999999999988888889999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-----CHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-----SAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+.. ...++.+.. +++++++||+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~----------~~~~~~vSA~ 178 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL----------GIPFLETSAK 178 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT----------TCCBCCCCC-
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHHc----------CCeEEEEECC
Confidence 99999999999999988888876543 2578999999999996541 122222222 2389999999
Q ss_pred CCCccccchH
Q psy12173 202 SNLHHLHVSV 211 (224)
Q Consensus 202 ~~~gv~~~~~ 211 (224)
+|.|+++.|.
T Consensus 179 ~g~gv~~l~~ 188 (199)
T 3l0i_B 179 NATNVEQSFM 188 (199)
T ss_dssp --HHHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9999954444
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=160.91 Aligned_cols=148 Identities=17% Similarity=0.205 Sum_probs=104.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH------HHHHhhcc--C
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR------RFWNTYFE--D 122 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~--~ 122 (224)
..++|+++|++|+|||||++++.+..+........|.+.....+.+++..+.+|||||++++. .....++. +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 357999999999999999999999876552222224455566677788999999999988653 33344453 8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+|++++|+|+++. +....|+..+.. .+.|+++|+||+|+... ...+++.+.++ ++++++
T Consensus 82 ~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------~~~~~~ 144 (165)
T 2wji_A 82 PDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG----------VKVVPL 144 (165)
T ss_dssp CSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------SCEEEC
T ss_pred CCEEEEEecCCch---hHhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC----------CCEEEE
Confidence 9999999999874 444456656544 37899999999998532 12333333332 289999
Q ss_pred ecCCCCccccchHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~ 216 (224)
||++|.|+++.|. .+.+
T Consensus 145 SA~~~~~v~~l~~-~l~~ 161 (165)
T 2wji_A 145 SAAKKMGIEELKK-AISI 161 (165)
T ss_dssp BGGGTBSHHHHHH-HHHH
T ss_pred EcCCCCCHHHHHH-HHHH
Confidence 9999999954444 4443
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-24 Score=167.07 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=107.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc------hh----HHHHHHhh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ------EN----VRRFWNTY 119 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~------~~----~~~~~~~~ 119 (224)
...++|+++|++|+|||||++++.+..+........|.......+..++..+.+|||||+ +. +... ..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTI-TAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHH-HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHH-HHh
Confidence 457899999999999999999999988754222233455666666777899999999998 43 3332 334
Q ss_pred ccCCCEEEEEEECCCCCCHHH--HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHH---HHhhcCcccccCcccc
Q psy12173 120 FEDTDLLVFVVDSADPSKLPV--AAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEE---VGVALDLSSISSRQHR 192 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~---~~~~~~~~~~~~~~~~ 192 (224)
+..+|++|+|+|++++.++.. ...++..+... ..+.|+++|+||+|+.+... .+. ..+..+. ....
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~ 178 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN-----VKNP 178 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH-----CCSC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh-----cCCC
Confidence 788999999999999888652 33455555432 24799999999999976422 221 1111110 1101
Q ss_pred eeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 193 IKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 193 ~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+++++|||++|.|+++.+. .+.+.+.
T Consensus 179 ~~~~~~SA~~g~gi~~l~~-~l~~~i~ 204 (228)
T 2qu8_A 179 IKFSSFSTLTGVGVEQAKI-TACELLK 204 (228)
T ss_dssp EEEEECCTTTCTTHHHHHH-HHHHHHH
T ss_pred ceEEEEecccCCCHHHHHH-HHHHHHH
Confidence 3899999999999955554 4444443
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-24 Score=163.25 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=109.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCC-CCceeEEEEEeCC--eEEEEEEcCCchh-HHHHHHhhccCCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSLSHNLKP-TEGFNITILQKGE--YTLNIFELGGQEN-VRRFWNTYFEDTD 124 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~~~~~~~-t~~~~~~~~~~~~--~~~~l~D~~G~~~-~~~~~~~~~~~~d 124 (224)
..+||+++|++|+|||||++++.+.. +.. .+.+ +.++....+.+++ ..+.+|||+|.+. ++.....+++.+|
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS--DXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC------GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCc--cccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 46899999999999999999999643 232 2222 2233344555655 4678999999876 3334566678899
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++++|||+++.+++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..+++|++|||++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~-------~~~~~~~e~SA~~ 155 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV-------VFDXKFIETSAAV 155 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-------HTTCEEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHH-------HhCCceEEecccc
Confidence 99999999999999999888877765433357999999999999643 33333222111 1123899999999
Q ss_pred CCccccchHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQA 217 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~ 217 (224)
|.|+++.|...+...
T Consensus 156 g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 156 QHNVKELFEGIVRQV 170 (192)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999966665555444
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=158.21 Aligned_cols=148 Identities=18% Similarity=0.247 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCCchh-------HHHHHHhhccCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQEN-------VRRFWNTYFEDTD 124 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d 124 (224)
++|+++|++|+|||||++++.+..+.... ....+.+.....+..++..+.+|||||++. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999988754221 222344556666777888999999999886 4556677789999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccce-eEEEeecCCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRI-KLIATQAPSN 203 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 203 (224)
++++|+|++++.+. ...++..+... .+.|+++|+||+|+.+. .++..+.. ..++ +++++||++|
T Consensus 82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~--------~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLY--------GLGFGDPIPTSSEHA 146 (161)
T ss_dssp EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGG--------GGSSCSCEECBTTTT
T ss_pred EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHH--------hCCCCCeEEEecccC
Confidence 99999999997443 33445555444 47899999999999754 11111111 1112 7999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.|+++ +...+.+
T Consensus 147 ~gv~~-l~~~l~~ 158 (161)
T 2dyk_A 147 RGLEE-LLEAIWE 158 (161)
T ss_dssp BSHHH-HHHHHHH
T ss_pred CChHH-HHHHHHH
Confidence 99944 4444433
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-25 Score=171.29 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=106.1
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEE-eCCeEEEEEEcCCchhHHHHH---HhhccC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQ-KGEYTLNIFELGGQENVRRFW---NTYFED 122 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~---~~~~~~ 122 (224)
...+.+||+++|++|+|||||++++.+......+ ....+.......+. .....+.+|||||++++.... ..++++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 3456899999999999999999988875422200 01111111222222 345899999999999987765 778999
Q ss_pred CCEEEEEEECCCC--CCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCc--ccccCccccee
Q psy12173 123 TDLLVFVVDSADP--SKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDL--SSISSRQHRIK 194 (224)
Q Consensus 123 ~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~--~~~~~~~~~~~ 194 (224)
+|++|+|+|++++ +++..+..|+..+.... .+.|+++|+||+|+.++.. ..++...... ........+++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 9999999999997 45555666666654332 5899999999999865311 1111111100 00000123459
Q ss_pred EEEeecCCCCccccchHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
|++|||++ .|+++.|...+.
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHH
T ss_pred eEEEEech-hhHHHHHHHHHH
Confidence 99999999 999666655544
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=175.92 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=117.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhH-----HHHHHhhccCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQK-GEYTLNIFELGGQENV-----RRFWNTYFEDT 123 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~-----~~~~~~~~~~~ 123 (224)
..+||+++|++|+|||||++++.++.... ...+.+|.+.....+.+ ++..+.+|||||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 35799999999999999999999874332 23567888888888776 6789999999999988 45667778999
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH---HHHhcCCCCCCcEEEEEeCCCCCCCCCH--------HHHHhhcCcccccCcccc
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELK---NLLGDQRLSTVPILVIANKQDVPGALSA--------EEVGVALDLSSISSRQHR 192 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~ 192 (224)
|++|+|+|++++++++++..|.. .+... ..++|+++|+||+|+.+.... ++..+..+.. ....
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~----g~~~ 155 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF----GFPN 155 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT----TCCS
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc----CCCC
Confidence 99999999999999998866543 33332 257999999999999762111 1222221110 1002
Q ss_pred eeEEEeecCCCCccccchHHHHHH
Q psy12173 193 IKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 193 ~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+++++|||++ .|+.+.+...+.+
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHT
T ss_pred eEEEEeeecC-ChHHHHHHHHHHH
Confidence 4999999999 7886777665543
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-26 Score=175.60 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=113.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
...++|+++|++|+|||||++++.++.+.. .+.+|++... ..+.. ....+.+|||||++++...+..+++.+|++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 567999999999999999999999888766 5555554322 22233 346677999999999999988899999999
Q ss_pred EEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHh--------hcCcccccCcccce-eEE
Q psy12173 127 VFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGV--------ALDLSSISSRQHRI-KLI 196 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~ 196 (224)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.....+..+ ..+..... ...++ +++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~ 182 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA-KEIGAVKYL 182 (204)
Confidence 9999999999999887 4555443322 3789999999999975421111000 00000111 12223 799
Q ss_pred EeecCCCCccccchHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEA 214 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i 214 (224)
+|||++|.|+++.+...+
T Consensus 183 ~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAI 200 (204)
Confidence 999999999965555443
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=159.76 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=102.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCCeEEEEEEcCC----------chhHHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGEYTLNIFELGG----------QENVRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~ 117 (224)
...++|+++|++|+|||||++++.+..+.. .+.++.+ ........+ ..+.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLA--RTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc--ccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 467899999999999999999999987554 2233322 112222232 3699999999 777877777
Q ss_pred hhccCC---CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH----HHHhhcCcccccCcc
Q psy12173 118 TYFEDT---DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE----EVGVALDLSSISSRQ 190 (224)
Q Consensus 118 ~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~ 190 (224)
.+++.+ |++++|+|++++.+..... +...+.. .+.|+++|+||+|+.+..... ++.+.+.. .
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~------~ 166 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI------D 166 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC------C
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc------c
Confidence 777666 9999999999987776532 2223333 478999999999998754332 23322321 1
Q ss_pred cceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 191 HRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 191 ~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
..++++++||++|.|+ +++...+.+.+
T Consensus 167 ~~~~~~~~Sa~~~~gv-~~l~~~l~~~l 193 (195)
T 1svi_A 167 PEDELILFSSETKKGK-DEAWGAIKKMI 193 (195)
T ss_dssp TTSEEEECCTTTCTTH-HHHHHHHHHHH
T ss_pred CCCceEEEEccCCCCH-HHHHHHHHHHh
Confidence 2338999999999999 55555555443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=156.13 Aligned_cols=153 Identities=21% Similarity=0.242 Sum_probs=107.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCCchhH----HH----HHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQENV----RR----FWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~----~~----~~~~~~~ 121 (224)
...+|+++|++|+|||||++++.+..+.... ....|.++....+..++..+.+|||||++++ .. ....+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 3469999999999999999999987643221 2233445666777788888999999998542 11 1123578
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++++|+|++++.++.. ..|+..+.... ..++|+++|+||+|+.+... + .. ....+++++|||+
T Consensus 83 ~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~--------~--~~--~~~~~~~~~~SA~ 148 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL--------G--MS--EVNGHALIRLSAR 148 (172)
T ss_dssp TCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC--------E--EE--EETTEEEEECCTT
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh--------h--hh--hccCCceEEEeCC
Confidence 9999999999999988763 45666555432 24799999999999854310 0 01 1123489999999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|++ ++...+.+.+
T Consensus 149 ~g~gv~-~l~~~l~~~~ 164 (172)
T 2gj8_A 149 TGEGVD-VLRNHLKQSM 164 (172)
T ss_dssp TCTTHH-HHHHHHHHHC
T ss_pred CCCCHH-HHHHHHHHHh
Confidence 999994 4444554443
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-24 Score=177.92 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH---HHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRR---FWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~ii~v 129 (224)
||+++|+.|+|||||++++.++.++.. ..+.+|+++....+. ...++.+|||+|+++|+. .+..++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 689999999999999999887754431 235688887776653 448899999999999964 467789999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhc--CCCCCCcEEEEEeCCCCCCCCC----HHHHHhhc--CcccccCcccceeEEEeecC
Q psy12173 130 VDSADPSKLPVAAMELKNLLGD--QRLSTVPILVIANKQDVPGALS----AEEVGVAL--DLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+|+++. +.+...+|..++.. ...++.|+++++||+|+.++.. ..++.+.. ++........++.|++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999998 44445555443321 1125799999999999976521 12222221 11111001245699999999
Q ss_pred CCCccccchHHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~ 220 (224)
+ .+|.++|...+.+.+.+
T Consensus 158 d-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp S-SHHHHHHHHHHTTSSTT
T ss_pred C-CcHHHHHHHHHHHHHhh
Confidence 7 58988888777655443
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=164.92 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=106.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCC-----------chhHHHHHHhhcc
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG-----------QENVRRFWNTYFE 121 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~~~~~ 121 (224)
++|+++|++|+|||||++++.+..+.. .+.+++.......... .+.+||||| ++.+...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRR--GKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSS--SSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCcc--CCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999998776 4445555444444444 689999999 6777777777776
Q ss_pred C-CCEEEEEEECCCCCCHHHH-HHHHHH--------HHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCc
Q psy12173 122 D-TDLLVFVVDSADPSKLPVA-AMELKN--------LLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSR 189 (224)
Q Consensus 122 ~-~d~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 189 (224)
. ++++++|+++.+..++.+. ..|... +.......+.|+++|+||+|+.+.. ..+++.+.++. ...
T Consensus 78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~ 154 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEV---PLS 154 (190)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTC---CGG
T ss_pred hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhh---hhh
Confidence 6 7766666666677777665 333221 1111111479999999999997753 12333333332 111
Q ss_pred ccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
.+.+++++|||++|.|+++.+. .+.+.+.
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~-~l~~~~~ 183 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKN-RIFEVIR 183 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHH-HHHHHHH
T ss_pred ccCCcEEEEecCCCCCHHHHHH-HHHHhcc
Confidence 1233689999999999955444 4544443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=157.74 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=109.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH------HHHHhhc--c
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR------RFWNTYF--E 121 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~--~ 121 (224)
++.++|+++|++|+|||||++++.+..+........|.+.....+..++..+.+|||||++.+. .....++ .
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 4568999999999999999999998775542232334455666777788999999999988663 3344444 3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEE
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (224)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+... ...+++.+.++ +++++
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------~~~~~ 147 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG----------VKVVP 147 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------SCEEE
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC----------CCeEE
Confidence 5999999999886 5556666666654 47899999999998532 23344444332 28999
Q ss_pred eecCCCCccccchHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+||++|.|+ +++.+.+.+.+.
T Consensus 148 ~Sa~~~~~v-~~l~~~i~~~~~ 168 (188)
T 2wjg_A 148 LSAAKKMGI-EELKKAISIAVK 168 (188)
T ss_dssp CBGGGTBSH-HHHHHHHHHHHT
T ss_pred EEecCCCCH-HHHHHHHHHHHH
Confidence 999999999 445555555443
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-23 Score=167.12 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=110.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH------HHHhhc--c
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR------FWNTYF--E 121 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~ 121 (224)
.+.++|+++|++|+|||||+++|++..+...+....|.......+..++..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 35689999999999999999999998866533334455556666777789999999999876542 223333 6
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEE
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (224)
.+|++++|+|+++.++. ..++..+.. .+.|+++|+||+|+.+. .+.+++.+.++ +++++
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg----------~~vi~ 145 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG----------IPVVF 145 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC----------SCEEE
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC----------CCEEE
Confidence 89999999999986443 345555543 37999999999998532 23444444443 38999
Q ss_pred eecCCCCccccchHHHHHHHHH
Q psy12173 198 TQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 198 ~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+||++|.|+ +++...+.+.+.
T Consensus 146 ~SA~~g~gi-~el~~~i~~~~~ 166 (258)
T 3a1s_A 146 TSSVTGEGL-EELKEKIVEYAQ 166 (258)
T ss_dssp CCTTTCTTH-HHHHHHHHHHHH
T ss_pred EEeeCCcCH-HHHHHHHHHHhh
Confidence 999999999 555555555443
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-23 Score=169.93 Aligned_cols=157 Identities=16% Similarity=0.162 Sum_probs=116.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
..++|+++|++|+|||||++++..+.+.. .+.+|++.... .+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCC--SCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCc--ccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 45899999999999999999999988776 56666664333 344554 45669999999999988888999999999
Q ss_pred EEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--------------CHHHHHhhcCcccccCcccc
Q psy12173 128 FVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGAL--------------SAEEVGVALDLSSISSRQHR 192 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~ 192 (224)
+|+|++++.++.... .|+..+.... .++|+++|+||+|+.+.. ..++..+..+ ..+
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~ 302 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK-------EIG 302 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH-------HTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH-------HcC
Confidence 999999999998887 4555554432 389999999999986531 1122211111 112
Q ss_pred e-eEEEeecCCCCccccchHHHHHHHHH
Q psy12173 193 I-KLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 193 ~-~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+ ++++|||++|.|+++. ...+.+.+.
T Consensus 303 ~~~~~~~Sa~~~~gi~~l-~~~l~~~~~ 329 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTV-FDEAIRAVL 329 (332)
T ss_dssp CSEEEECCTTTCTTHHHH-HHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHH-HHHHHHHHh
Confidence 2 8999999999999544 445554443
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-23 Score=155.41 Aligned_cols=158 Identities=14% Similarity=0.177 Sum_probs=103.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCCeEEEEEEcCC----------chhHHHHHHh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGEYTLNIFELGG----------QENVRRFWNT 118 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~D~~G----------~~~~~~~~~~ 118 (224)
...++|+++|++|+|||||++++.+..+.. ..++.+..... ....+..+.+||||| ++.+...+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF---VSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC---CCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc---ccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 467899999999999999999999987433 22232221111 112244688999999 6677776666
Q ss_pred hccCC---CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeE
Q psy12173 119 YFEDT---DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 119 ~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
+++.+ |++++|+|+++..+.... .+...+.. .+.|+++|+||+|+.+........+....... ....+++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~ 170 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS--KYGEYTI 170 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH--SSCCSCE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHh--hcCCCce
Confidence 66555 999999999887554332 22233333 27899999999999765433333222211111 1112389
Q ss_pred EEeecCCCCccccchHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
+++||++|.|+ +++...+.+.+
T Consensus 171 ~~~Sa~~~~gv-~~l~~~l~~~l 192 (195)
T 3pqc_A 171 IPTSSVTGEGI-SELLDLISTLL 192 (195)
T ss_dssp EECCTTTCTTH-HHHHHHHHHHH
T ss_pred EEEecCCCCCH-HHHHHHHHHHh
Confidence 99999999999 55555555544
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-24 Score=169.16 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH----------HHHhhc--
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR----------FWNTYF-- 120 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~~~-- 120 (224)
.+|+++|++|+|||||+++|++..+...+....|.+.....+..++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 48999999999999999999998765544444555677777888889999999999876542 445555
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEE
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
+.+|++|+|+|+++.++.. .+...+.. .+.|+++|+||+|+.+. ...+.+.+.++ ++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~---~l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg----------~~vi 144 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHL---YLTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG----------CSVI 144 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHH---HHHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC----------SCEE
T ss_pred CCCCEEEEEeeCCCchhHH---HHHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC----------CCEE
Confidence 8999999999999954333 23333322 37999999999998543 23344444443 3999
Q ss_pred EeecCCCCccccchHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~ 215 (224)
++||++|.|+ +++...+.
T Consensus 145 ~~SA~~g~gi-~el~~~i~ 162 (256)
T 3iby_A 145 PIQAHKNIGI-PALQQSLL 162 (256)
T ss_dssp ECBGGGTBSH-HHHHHHHH
T ss_pred EEECCCCCCH-HHHHHHHH
Confidence 9999999999 44444443
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=155.21 Aligned_cols=158 Identities=22% Similarity=0.295 Sum_probs=116.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..+.. .+.+|.+ +....+.+++ ..+.+||++|++.++.....+++.+++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 80 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG 80 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence 356899999999999999999999998776 5556654 4455666665 567899999999988777778889999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++..++.+...|+..+.... ..+.|+++++||+|+.+. ...++...... ..++.++++||+++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-------~~~~~~~d~Sal~~ 152 (199)
T 2f9l_A 81 ALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-------KNNLSFIETSALDS 152 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-------HTTCEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCcCHHHHHHHHH-------HcCCeEEEEeCCCC
Confidence 999999999888887777776665432 246899999999999653 33333333221 11238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|++ ++...+.+.+
T Consensus 153 ~~i~-~l~~~l~~~~ 166 (199)
T 2f9l_A 153 TNVE-EAFKNILTEI 166 (199)
T ss_dssp TTHH-HHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHH
Confidence 9995 4444554444
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=169.26 Aligned_cols=148 Identities=19% Similarity=0.228 Sum_probs=106.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH----------HHHHhh-
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR----------RFWNTY- 119 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~- 119 (224)
..++|+++|++|+|||||+|+|++..+...+....|.+.....+...+..+.+|||||+.++. .....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 468999999999999999999999886554444445566677777788899999999977644 222222
Q ss_pred -ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCccccee
Q psy12173 120 -FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 120 -~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
.+.+|++++|+|+++.++... +...+... ++|+++|+||+|+.+. ...+++.+.++ ++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg----------~~ 144 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLY---LTLQLLEL----GIPCIVALNMLDIAEKQNIRIEIDALSARLG----------CP 144 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH----TCCEEEEEECHHHHHHTTEEECHHHHHHHHT----------SC
T ss_pred hhcCCCEEEEEecCCChHHHHH---HHHHHHhc----CCCEEEEEECccchhhhhHHHHHHHHHHhcC----------CC
Confidence 379999999999998544333 33333332 7999999999998543 23344444443 38
Q ss_pred EEEeecCCCCccccchHHHHHH
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
++++||++|.|+ +++...+.+
T Consensus 145 ~i~~SA~~g~gi-~el~~~i~~ 165 (274)
T 3i8s_A 145 VIPLVSTRGRGI-EALKLAIDR 165 (274)
T ss_dssp EEECCCGGGHHH-HHHHHHHHT
T ss_pred EEEEEcCCCCCH-HHHHHHHHH
Confidence 999999999999 455555544
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-23 Score=160.32 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=105.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC-CC-CCCCCCCceeEEEEE-eCCeEEEEEEcCC----------chhHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS-LS-HNLKPTEGFNITILQ-KGEYTLNIFELGG----------QENVRRFW 116 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~-~~-~~~~~t~~~~~~~~~-~~~~~~~l~D~~G----------~~~~~~~~ 116 (224)
...++|+++|++|+|||||+++|++..+. .. .....|......... .++..+.+||||| ++.+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 45789999999999999999999998732 21 122223334444444 3568899999999 34555555
Q ss_pred HhhccC---CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHH----hhcCcccccCc
Q psy12173 117 NTYFED---TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVG----VALDLSSISSR 189 (224)
Q Consensus 117 ~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~ 189 (224)
..++.. +|++++|+|++++.+ .....+...+.. .++|+++|+||+|+.......+.. +.+........
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 555544 788999999998644 333334444443 478999999999997652222111 22111000000
Q ss_pred ccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
...++++++||++|.|+ +++...+.+.+.
T Consensus 182 ~~~~~~~~~SA~~g~gv-~~l~~~l~~~~~ 210 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGL-DDAHALIESWLR 210 (223)
T ss_dssp CSCEEEEEEBTTTTBSH-HHHHHHHHHHHC
T ss_pred CCCCeEEEeecCCCcCH-HHHHHHHHHhcC
Confidence 13348999999999999 555566666554
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=171.63 Aligned_cols=163 Identities=13% Similarity=0.069 Sum_probs=111.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCceeEEEEEeCCeEEEEEEcCCc----------hhHHHHHH-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS-LSHNLKPTEGFNITILQKGEYTLNIFELGGQ----------ENVRRFWN- 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~~- 117 (224)
...++|+++|.+|+|||||++++++..+. .......|.+.....+..++..+.+|||||+ +.+.....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 35689999999999999999999988754 2122233445556677778889999999997 66665543
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHHHHhhcCcccccCcccceeE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
.+++.+|++++|+|++++.+.... .++..+.. .++|+++|+||+|+.+... .++..+.+..... ....+++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~--~~~~~~~ 325 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ--FLDYAPI 325 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG--GGTTSCE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc--cCCCCCE
Confidence 468899999999999999887664 44444433 4799999999999976533 3333332211111 1112489
Q ss_pred EEeecCCCCccccchHHHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++||++|.|+ +++...+.+.+.+
T Consensus 326 ~~~SA~tg~~v-~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 326 LFMSALTKKRI-HTLMPAIIKASEN 349 (436)
T ss_dssp EECCTTTCTTG-GGHHHHHHHHHHH
T ss_pred EEEecccCCCH-HHHHHHHHHHHHH
Confidence 99999999999 4555555555543
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-24 Score=170.32 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=106.1
Q ss_pred cccccEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCCCCC-c--eeEEE----------------EEeC
Q psy12173 49 DIFQRKILILGLD---------NSGKSTLIKQISS---GNTSLSHNLKPTE-G--FNITI----------------LQKG 97 (224)
Q Consensus 49 ~~~~~~i~v~G~~---------~sGKSsl~~~l~~---~~~~~~~~~~~t~-~--~~~~~----------------~~~~ 97 (224)
.+..+||+++|++ |+|||||++++.+ ..+.. .+.+|+ + +.... +...
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~--~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHL--DHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCS--CCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCcccc--ccCCcccccccceeEeecccccccccccccccCCc
Confidence 3567999999999 9999999999999 44444 344443 1 11111 1224
Q ss_pred CeEEEEEE-----------------------cCCchhHHHHHHhhcc---------------------CCCEEEEEEECC
Q psy12173 98 EYTLNIFE-----------------------LGGQENVRRFWNTYFE---------------------DTDLLVFVVDSA 133 (224)
Q Consensus 98 ~~~~~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~ii~v~d~~ 133 (224)
...+.+|| ++|++++...+..++. ++|++|+|+|++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 47899999 5555555555555555 799999999999
Q ss_pred CC--CCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 134 DP--SKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 134 ~~--~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
++ ++++.+..|+..+.......++|+++|+||+|+.+....++..+... ...++++++|||++|.|+++.|.
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~------~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL------SKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH------TSSSCCEEECBTTTTBSHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH------hcCCCeEEEEECCCCCCHHHHHH
Confidence 98 99999999988876542224799999999999965422222222221 11123899999999999955444
Q ss_pred HHHHHHH
Q psy12173 212 VEAEQAM 218 (224)
Q Consensus 212 ~~i~~~l 218 (224)
.+.+.+
T Consensus 248 -~l~~~l 253 (255)
T 3c5h_A 248 -TLVQLI 253 (255)
T ss_dssp -HHHHHH
T ss_pred -HHHHHh
Confidence 444443
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=162.56 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=112.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH------HHHhhc--cC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR------FWNTYF--ED 122 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~--~~ 122 (224)
+.++|+++|++|+|||||+++|++..+...+....|.+.....+.+.+..+.+|||||+..+.. ....++ ..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4679999999999999999999998875533444455566677778889999999999776543 344444 78
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
+|++++|+|+++. .....++..+... ...|+++|+||+|+.+. ...+++.+.++ ++++++
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----------~~~~~~ 145 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG----------VPVIPT 145 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----------SCEEEC
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC----------CcEEEE
Confidence 9999999999985 3344455555543 23999999999997432 33455555554 289999
Q ss_pred ecCCCCccccchHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
||++|.|+ +++...+.+.+.
T Consensus 146 Sa~~g~gi-~~l~~~i~~~~~ 165 (271)
T 3k53_A 146 NAKKGEGV-EELKRMIALMAE 165 (271)
T ss_dssp BGGGTBTH-HHHHHHHHHHHH
T ss_pred EeCCCCCH-HHHHHHHHHHHh
Confidence 99999999 556666666554
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-23 Score=168.79 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=119.6
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchh----H---HHHHHhh
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQEN----V---RRFWNTY 119 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~----~---~~~~~~~ 119 (224)
+.....+|+++|.+++|||||+++++..++...+....|...+...+.+.+ ..+.+|||||..+ + ...+...
T Consensus 154 eLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~ 233 (342)
T 1lnz_A 154 ELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRH 233 (342)
T ss_dssp EEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHH
T ss_pred hhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHH
Confidence 333456899999999999999999998775433344567777777777765 8999999999654 1 1222233
Q ss_pred ccCCCEEEEEEECCC---CCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCCC-CHHHHHhhcCcccccCccccee
Q psy12173 120 FEDTDLLVFVVDSAD---PSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGAL-SAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
++.+|++|+|+|+++ .++++....++.++..... ...+|+++|+||+|+.... ..+++.+.+.. . ++
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~--~~ 305 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------D--YP 305 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------C--CC
T ss_pred HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------C--CC
Confidence 556999999999998 7788888888888776532 3579999999999997541 12233333321 1 27
Q ss_pred EEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 195 LIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 195 ~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
++++||+++.|+ +++...+.+.+...
T Consensus 306 v~~iSA~tg~gi-~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 306 VFPISAVTREGL-RELLFEVANQLENT 331 (342)
T ss_dssp BCCCSSCCSSTT-HHHHHHHHHHHTSC
T ss_pred EEEEECCCCcCH-HHHHHHHHHHHhhC
Confidence 999999999999 66666777766543
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=160.30 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=113.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeC-CeEEEEEEcCCchh----------HHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKG-EYTLNIFELGGQEN----------VRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~-~~~~~l~D~~G~~~----------~~~~~~ 117 (224)
.+.-.|+++|.+|+|||||+|+|++.++...+... .|..........+ +.++.+|||||+.. +.....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 45679999999999999999999998876432333 3334445556667 89999999999843 335566
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC-CCCCHHHHHhhcCcccccCcccceeEE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP-GALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
.+++.+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+. +.....+..+.+... ....++++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~----~~~~~~i~ 159 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK----HPELTEIV 159 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH----CTTCCCEE
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh----ccCCCeEE
Confidence 778999999999999998888776655555544 378999999999997 332222222222100 01123899
Q ss_pred EeecCCCCccccchHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
++||++|.|+ +++...+.+.+
T Consensus 160 ~vSA~~g~gv-~~L~~~l~~~l 180 (308)
T 3iev_A 160 PISALKGANL-DELVKTILKYL 180 (308)
T ss_dssp ECBTTTTBSH-HHHHHHHHHHS
T ss_pred EEeCCCCCCH-HHHHHHHHHhC
Confidence 9999999999 55555555443
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.7e-22 Score=160.52 Aligned_cols=154 Identities=19% Similarity=0.163 Sum_probs=107.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCCeEEEEEEcCCchh--------HHHHHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGEYTLNIFELGGQEN--------VRRFWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 121 (224)
+..+|+++|.+|+|||||+|+|++.++...+....|+. ........++.++.+|||||... +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45689999999999999999999988754323333333 33334556789999999999765 4556667789
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeec
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
.+|++++|+|++++.+. ...++...+.... .+.|+++|+||+|+.+... ..+..+.+ ... .+++++||
T Consensus 86 ~ad~il~VvD~~~~~~~--~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~--~~~~~iSA 154 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTP--EDELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPE--AEPRMLSA 154 (301)
T ss_dssp SCSEEEEEEETTSCCCH--HHHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STT--SEEEECCT
T ss_pred cCCEEEEEEECCCCCCh--HHHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCc--CcEEEEeC
Confidence 99999999999987443 3455544444321 4799999999999976522 22222222 112 27999999
Q ss_pred CCCCccccchHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~ 216 (224)
++|.|+ +.+.+.+.+
T Consensus 155 ~~g~gv-~~l~~~l~~ 169 (301)
T 1wf3_A 155 LDERQV-AELKADLLA 169 (301)
T ss_dssp TCHHHH-HHHHHHHHT
T ss_pred CCCCCH-HHHHHHHHH
Confidence 999999 445445443
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=161.90 Aligned_cols=146 Identities=21% Similarity=0.293 Sum_probs=102.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH------HHHHhhcc--CC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR------RFWNTYFE--DT 123 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~------~~~~~~~~--~~ 123 (224)
.++|+++|++|+|||||+++|++..+...+....|.......+.. +..+.+|||||+.++. .....++. .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 479999999999999999999997754433333344444444444 6789999999988764 34444454 69
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
|++++|+|+++.++ ...+...+.. .+.|+++|+||+|+... ...+++.+.++ ++++++|
T Consensus 82 d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----------~~vi~~S 144 (272)
T 3b1v_A 82 DSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG----------VPVVATS 144 (272)
T ss_dssp SEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------SCEEECB
T ss_pred CEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC----------CCEEEEE
Confidence 99999999998533 3344445443 37999999999998532 23444444443 3899999
Q ss_pred cCCCCccccchHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~ 216 (224)
|++|.|+++ +...+.+
T Consensus 145 A~~g~gi~e-l~~~i~~ 160 (272)
T 3b1v_A 145 ALKQTGVDQ-VVKKAAH 160 (272)
T ss_dssp TTTTBSHHH-HHHHHHH
T ss_pred ccCCCCHHH-HHHHHHH
Confidence 999999944 4444444
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-22 Score=151.40 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=116.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..++|+++|++|+|||||++++.+..++. .+.+|.+ +....+.+++ ..+.+||++|++++...+..+++.+++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 467899999999999999999999998877 5556665 3455666666 456679999999887777777889999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++..++++...|+..+.... ....|+++++||+|+.+. ...++...... ..++.++++||+++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-------~~~~~~ld~Sald~ 176 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-------KNGLSFIETSALDS 176 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-------HTTCEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-------HcCCEEEEEeCCCC
Confidence 999999999888877777776654432 246899999999999653 33333332221 11238999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.|+ +++.+.+.+
T Consensus 177 ~~v-~~l~~~l~~ 188 (191)
T 1oix_A 177 TNV-EAAFQTILT 188 (191)
T ss_dssp TTH-HHHHHHHHH
T ss_pred CCH-HHHHHHHHH
Confidence 999 444445544
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-22 Score=174.50 Aligned_cols=156 Identities=16% Similarity=0.255 Sum_probs=106.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEE--------Ee----CCeEEEEEEcCCchhHHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL--------QK----GEYTLNIFELGGQENVRRFWN 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~--------~~----~~~~~~l~D~~G~~~~~~~~~ 117 (224)
...+||+++|++|+|||||++++.+..+.. .+.+|.+...... .. .+..+.+|||||++.+.....
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~--~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDP--KESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 467999999999999999999999998876 6677877665543 11 258999999999999998888
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
.+++++|++|+|+|+++.+ ....|+..+.... .+.|+++|+||+|+.+. ...++..+..... ++++
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~-------~~~~ 184 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAI-------ENRF 184 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG-------TTCE
T ss_pred HHccCCcEEEEEEeCCCch---hHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhc-------CCce
Confidence 8899999999999998764 4455555555543 36899999999999764 3455555544321 2379
Q ss_pred EEeecCCCCccccchHHHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++||++|.|+ +++...+.+.+.+
T Consensus 185 ~~vSA~~g~gi-~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 185 HRISCKNGDGV-ESIAKSLKSAVLH 208 (535)
T ss_dssp EECCC-----C-TTHHHHHHHHHTC
T ss_pred EEEecCcccCH-HHHHHHHHHHHhc
Confidence 99999999999 5555566665543
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-23 Score=161.14 Aligned_cols=152 Identities=22% Similarity=0.322 Sum_probs=103.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccC----CC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFED----TD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~----~d 124 (224)
...++|+++|++|+|||||++++.+..+... ..+.++++. .+....+.+|||||++.++..+..+++. +|
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 84 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 84 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-----TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-----EeeCceEEEEECCCcHHHHHHHHHHHHhccccCC
Confidence 4568999999999999999999999876541 112232221 1256789999999999998877777776 89
Q ss_pred EEEEEEECC-CCCCHHHHHHHHHHHHhcC---CCCCCcEEEEEeCCCCCCCCCHHHHHhhcCccccc-CcccceeEEEee
Q psy12173 125 LLVFVVDSA-DPSKLPVAAMELKNLLGDQ---RLSTVPILVIANKQDVPGALSAEEVGVALDLSSIS-SRQHRIKLIATQ 199 (224)
Q Consensus 125 ~ii~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~S 199 (224)
++|+|+|++ +++++.....++..+.... ...++|+++|+||+|+......+++.+.+...... .....++|+++|
T Consensus 85 ~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~S 164 (218)
T 1nrj_B 85 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVE 164 (218)
T ss_dssp EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999 8899999999988887642 12579999999999998876655443332210000 011123788888
Q ss_pred cCCCCcc
Q psy12173 200 APSNLHH 206 (224)
Q Consensus 200 a~~~~gv 206 (224)
|++|.+.
T Consensus 165 a~~~~~~ 171 (218)
T 1nrj_B 165 RKINEED 171 (218)
T ss_dssp -------
T ss_pred ccccccc
Confidence 8877653
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=165.05 Aligned_cols=135 Identities=19% Similarity=0.270 Sum_probs=104.1
Q ss_pred CCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC----------CCCHHHHHHHHHHHHhcCC
Q psy12173 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD----------PSKLPVAAMELKNLLGDQR 153 (224)
Q Consensus 84 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 153 (224)
.+|+|+....+.+++..+.+|||+|+++++..|..++++++++|+|+|+++ .+++.+...|+..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 346677777888889999999999999999999999999999999999999 5679999999999988765
Q ss_pred CCCCcEEEEEeCCCCCC-----------------CCCHHHHHhhcC-----cccccCcccceeEEEeecCCCCccccchH
Q psy12173 154 LSTVPILVIANKQDVPG-----------------ALSAEEVGVALD-----LSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 154 ~~~~piilv~nK~Dl~~-----------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
..++|++|++||+|+.. ..+.++..+.+. +... .....+.+++|||++|.||++.|.
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~-~~~~~~~~~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKR-KDTKEIYTHFTCATDTKNVQFVFD 336 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSC-TTTCCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcc-cCCCceEEEEEECcCchhHHHHHH
Confidence 67899999999999852 133444444332 1110 012234899999999999977776
Q ss_pred HHHHHHHH
Q psy12173 212 VEAEQAMY 219 (224)
Q Consensus 212 ~~i~~~l~ 219 (224)
..+..++.
T Consensus 337 ~v~~~i~~ 344 (353)
T 1cip_A 337 AVTDVIIK 344 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=168.79 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=112.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCceeEEEEEeCCeEEEEEEcCC----------chhHHHHHH-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS-LSHNLKPTEGFNITILQKGEYTLNIFELGG----------QENVRRFWN- 117 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~~- 117 (224)
...++|+++|.+++|||||++++.+.... .......|.+.....+..++..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 45689999999999999999999976532 212223344455566778888999999999 777777654
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
.+++.+|++++|+|++++.+ ....++...... .++|+++|+||+|+.+. ...++..+.++....... .+++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 345 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD--YAPI 345 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGT--TSCE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCC--CCCE
Confidence 47889999999999998643 444444444444 47999999999999764 223444443321111111 2389
Q ss_pred EEeecCCCCccccchHHHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++||++|.|+ +++...+.+.+.+
T Consensus 346 ~~~SA~~g~gv-~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 346 LFMSALTKKRI-HTLMPAIIKASEN 369 (456)
T ss_dssp EECCTTTCTTG-GGHHHHHHHHHHH
T ss_pred EEEcCCCCcCH-HHHHHHHHHHHHH
Confidence 99999999999 5555566665543
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=168.44 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=110.7
Q ss_pred cccccccEEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhh
Q psy12173 47 VDDIFQRKILILGLDNSGKSTLIKQISSGN-------TSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTY 119 (224)
Q Consensus 47 ~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~-------~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 119 (224)
...+..++|+++|++++|||||+++|.+.. +..+.....|++..+..+..++..+.+|||||++++...+...
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHH
Confidence 344678999999999999999999999876 2232233456666666677788999999999999998888888
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC-cccceeEEEe
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS-RQHRIKLIAT 198 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 198 (224)
+..+|++|+|+|++++.. .+..+.+..+ .. .++|.++++||+|+.+....++..+.+....... ....++++++
T Consensus 94 ~~~aD~~ilVvda~~g~~-~qt~e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPK-TQTGEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp TTSCCEEEEEEETTTCSC-HHHHHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred HhhCCEEEEEEecCCCcc-HHHHHHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 999999999999998632 2233333332 22 3788899999999976322222222211000000 0113489999
Q ss_pred ecCCCCccccchHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
||++|.|+ +++.+.+.+.+.
T Consensus 169 SA~~g~gI-~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGV-DELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTH-HHHHHHHHHHHH
T ss_pred ECcCCCCH-HHHHHHHHHhhc
Confidence 99999999 666666666553
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=166.16 Aligned_cols=153 Identities=21% Similarity=0.242 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEEEeCCeEEEEEEcCCchh---------HHHHHHhhccC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQKGEYTLNIFELGGQEN---------VRRFWNTYFED 122 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~~~~ 122 (224)
.+|+++|.+|+|||||+|+|++..... .+....|.+.....+.+.+..+.+|||||.+. ++.....+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 489999999999999999999887432 22333455567788888999999999999653 45566778999
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHH-HhhcCcccccCcccceeEEEeecC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEV-GVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
+|++++|+|+.++.+.. ..++..++.. .++|+++|+||+|+.+.. ..+. .+..++ ... +++++||+
T Consensus 82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~l-----g~~--~~~~iSA~ 148 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELYSL-----GFG--EPIPVSAE 148 (439)
T ss_dssp CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGGG-----SSC--SCEECBTT
T ss_pred CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHhc-----CCC--CEEEEecc
Confidence 99999999999875543 3344444443 378999999999985320 1111 122111 111 68999999
Q ss_pred CCCccccchHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~ 219 (224)
+|.|+ +++.+.+.+.+.
T Consensus 149 ~g~gv-~~L~~~i~~~l~ 165 (439)
T 1mky_A 149 HNINL-DTMLETIIKKLE 165 (439)
T ss_dssp TTBSH-HHHHHHHHHHHH
T ss_pred CCCCH-HHHHHHHHHhcc
Confidence 99999 555555555443
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-21 Score=158.59 Aligned_cols=160 Identities=18% Similarity=0.273 Sum_probs=116.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhH---------HHHHHhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENV---------RRFWNTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~ 120 (224)
...++|+++|.+|+|||||++++.+..+...+....|.+.....+...+..+.+|||||.... ........
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 356799999999999999999999987543233445666666777777889999999997431 12223445
Q ss_pred cCCCEEEEEEECCCCC--CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 121 EDTDLLVFVVDSADPS--KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
..+|++++|+|++++. ++.....++..+.... .+.|+++|+||+|+......++..+.+. ..+++++++
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~-------~~~~~~~~i 315 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVK-------EKGLNPIKI 315 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHH-------HTTCCCEEC
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHH-------hcCCCeEEE
Confidence 6799999999999887 6777788888776653 2799999999999976532222322221 112389999
Q ss_pred ecCCCCccccchHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
||++|+|+ +++...+.+.+.
T Consensus 316 SA~~g~gi-~~l~~~i~~~l~ 335 (357)
T 2e87_A 316 SALKGTGI-DLVKEEIIKTLR 335 (357)
T ss_dssp BTTTTBTH-HHHHHHHHHHHH
T ss_pred eCCCCcCH-HHHHHHHHHHHH
Confidence 99999999 555556665554
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=165.15 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=95.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHH--------Hhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFW--------NTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--------~~~~~ 121 (224)
..++|+++|.+|+|||||+|+|.+...... +....|.++....+..++..+.+|||||+.++...+ ..+++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 457899999999999999999998763322 222334456667778889999999999987755332 34678
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH--HHhhcCcccccCcccceeEEEee
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE--VGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
.+|++++|+|++++.++.+...+ ..+.... .++|+++|+||+|+.+....+. +.+. .. ++++++|
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~-~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~--~~~i~vS 378 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEI-RELKAAH--PAAKFLTVANKLDRAANADALIRAIADG--------TG--TEVIGIS 378 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHH-HHHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HT--SCEEECB
T ss_pred cCCEEEEEEECCCCcchhhhHHH-HHHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc--------CC--CceEEEE
Confidence 99999999999999887643222 2222222 3799999999999987643321 1111 01 2899999
Q ss_pred cCCCCccccchHHHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~ 219 (224)
|++|.|+ +++...+.+.+.
T Consensus 379 Aktg~GI-~eL~~~i~~~~~ 397 (476)
T 3gee_A 379 ALNGDGI-DTLKQHMGDLVK 397 (476)
T ss_dssp TTTTBSH-HHHHHHHTHHHH
T ss_pred ECCCCCH-HHHHHHHHHHHh
Confidence 9999999 666666666654
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=166.34 Aligned_cols=151 Identities=19% Similarity=0.208 Sum_probs=112.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCch-hHH--------HHHHhhcc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQE-NVR--------RFWNTYFE 121 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~-~~~--------~~~~~~~~ 121 (224)
.++|+++|.+|+|||||+|+|.+..+... +....|.++....+..++..+.+|||||.. .+. .....+++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 37999999999999999999998864322 233345567777888889999999999987 432 22344688
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++|+|+|++++.+++.. +.+..+ .++|+++|+||+|+.+....+++.+... . .++++++||+
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~-~il~~l------~~~piivV~NK~DL~~~~~~~~~~~~~~------~--~~~~i~iSAk 387 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDR-KILERI------KNKRYLVVINKVDVVEKINEEEIKNKLG------T--DRHMVKISAL 387 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHH-HHHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHT------C--STTEEEEEGG
T ss_pred cccEEEEEecCCCCCCHHHH-HHHHHh------cCCCEEEEEECcccccccCHHHHHHHhc------C--CCcEEEEECC
Confidence 99999999999999887653 233222 3789999999999987655555554432 1 1279999999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.|+ +++...+.+.+
T Consensus 388 tg~Gi-~eL~~~l~~~~ 403 (482)
T 1xzp_A 388 KGEGL-EKLEESIYRET 403 (482)
T ss_dssp GTCCH-HHHHHHHHHHT
T ss_pred CCCCH-HHHHHHHHHHH
Confidence 99999 55555655543
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-21 Score=161.71 Aligned_cols=161 Identities=16% Similarity=0.084 Sum_probs=109.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCC--------------ce-----eEEEEEeCCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTE--------------GF-----NITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~--------------~~-----~~~~~~~~~~~~~l~D~~G~ 109 (224)
+..++|+++|++++|||||+++|++........+. .+. .. ...........+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 46789999999999999999999985432200000 000 00 00000111278999999999
Q ss_pred hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH----HHHhhcCccc
Q psy12173 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE----EVGVALDLSS 185 (224)
Q Consensus 110 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~ 185 (224)
+.+...+...+..+|++++|+|++++.++.+..+++..+... ...|+++++||+|+.+..... ++.+.+..
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~-- 160 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG-- 160 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh--
Confidence 999999888899999999999999988777777777665443 236899999999997652221 22222211
Q ss_pred ccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
. ....++++++||++|.|+ +++.+.+.+.+
T Consensus 161 ~--~~~~~~ii~vSA~~g~gi-~~L~~~l~~~l 190 (403)
T 3sjy_A 161 T--WAENVPIIPVSALHKINI-DSLIEGIEEYI 190 (403)
T ss_dssp S--TTTTCCEEECBTTTTBSH-HHHHHHHHHHS
T ss_pred h--CCCCCEEEEEECCCCcCh-HHHHHHHHHhC
Confidence 0 111348999999999999 56666665543
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=161.31 Aligned_cols=155 Identities=15% Similarity=0.130 Sum_probs=104.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-------------------------------SLSHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 98 (224)
...++|+++|++++|||||+++|+.... ..+.....|.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 4678999999999999999999964321 111112345555666677788
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCC---H---HHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSK---L---PVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGA 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 171 (224)
..+.+|||||+++|...+...+..+|++|+|+|++++.. + .+..+.+..... .++| +++++||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCccc
Confidence 999999999999999988888999999999999998642 1 123333333322 3566 9999999999642
Q ss_pred -C---CHHHHHhhc----CcccccCcccceeEEEeecCCCCccccc
Q psy12173 172 -L---SAEEVGVAL----DLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 172 -~---~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
. ..+++.+.+ ....+.. ..+++++++||++|.|+++.
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~-~~~~~~i~iSA~~G~ni~~l 215 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNP-KKDIHFMPCSGLTGANLKEQ 215 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccc-cCCeeEEEeeccCCcccccc
Confidence 1 122222221 1111100 01248999999999999653
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=160.78 Aligned_cols=132 Identities=18% Similarity=0.257 Sum_probs=94.7
Q ss_pred CCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC----------CCCHHHHHHHHHHHHhcCCCC
Q psy12173 86 TEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD----------PSKLPVAAMELKNLLGDQRLS 155 (224)
Q Consensus 86 t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 155 (224)
|+|+....+..++..+.+|||+|+++++..+..++++++++|||+|+++ .+++.+...++..+.......
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 4566666777888999999999999999999999999999999999999 678999999999998876567
Q ss_pred CCcEEEEEeCCCCCC-----------------C-CCHHHHHhhc-----Cccccc-CcccceeEEEeecCCCCccccchH
Q psy12173 156 TVPILVIANKQDVPG-----------------A-LSAEEVGVAL-----DLSSIS-SRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 156 ~~piilv~nK~Dl~~-----------------~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
++|++|++||+|+.+ . .+.++..+.+ ++.... .+. +.+++|||+++.||++.|.
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~--~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP--LYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C--CEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc--eEEEEEecCCchhHHHHHH
Confidence 899999999999852 1 3445544432 211111 123 3899999999999977666
Q ss_pred HHHHHHHH
Q psy12173 212 VEAEQAMY 219 (224)
Q Consensus 212 ~~i~~~l~ 219 (224)
.....++.
T Consensus 346 ~v~~~i~~ 353 (362)
T 1zcb_A 346 DVKDTILH 353 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-21 Score=155.49 Aligned_cols=135 Identities=18% Similarity=0.255 Sum_probs=103.9
Q ss_pred CCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC----------CCCCHHHHHHHHHHHHhcC
Q psy12173 83 LKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DPSKLPVAAMELKNLLGDQ 152 (224)
Q Consensus 83 ~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~ 152 (224)
..+|+|+....+..++..+.+|||+|+++++..|..++++++++|+|+|++ +.+++.+...++..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 345678888888889999999999999999999999999999999999655 6677889999999998876
Q ss_pred CCCCCcEEEEEeCCCCCCC------------------CCHHHHHhhc-----CcccccCcccceeEEEeecCCCCccccc
Q psy12173 153 RLSTVPILVIANKQDVPGA------------------LSAEEVGVAL-----DLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 153 ~~~~~piilv~nK~Dl~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
...+.|+++++||+|+.++ .+.++..+.+ +......+ .+.+.+|||+++.||+..
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~--~i~~~~TsA~d~~nV~~v 308 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDK--IIYSHFTCATDTENIRFV 308 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTS--CEEEEECCTTCHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccC--CcEEEEEEeecCHHHHHH
Confidence 6678999999999998542 2334433321 11111112 348899999999999777
Q ss_pred hHHHHHHHHH
Q psy12173 210 SVVEAEQAMY 219 (224)
Q Consensus 210 ~~~~i~~~l~ 219 (224)
|......++.
T Consensus 309 F~~v~~~Il~ 318 (327)
T 3ohm_A 309 FAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666555554
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=164.95 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=104.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEEEeCCe-EEEEEEcCCchhHHH-------HHHhhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITILQKGEY-TLNIFELGGQENVRR-------FWNTYF 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~-~~~l~D~~G~~~~~~-------~~~~~~ 120 (224)
...++|+++|+.++|||||++++++..+.. ......|.+.....+...+. .+.+|||||++.+.. ....++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 467899999999999999999999988642 22334466677777777654 999999999875432 234568
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
..+|++|+|+|+.. ......|+..+... ++|+++|+||+|+......+...+..+ .++++++++||
T Consensus 112 ~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~~~~~l~~-------~~g~~v~~vSA 177 (423)
T 3qq5_A 112 YRADCGILVTDSAP---TPYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAEELKGLYES-------RYEAKVLLVSA 177 (423)
T ss_dssp TSCSEEEEECSSSC---CHHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCTHHHHHSSC-------CTTCCCCCCSS
T ss_pred hcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHHHHHHHHHH-------HcCCCEEEEEC
Confidence 89999999999922 33344555555443 799999999999987654433332222 12348999999
Q ss_pred CCCCccccchHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l 218 (224)
++|.|+ +++...+.+.+
T Consensus 178 ktg~gI-~eL~~~L~~~l 194 (423)
T 3qq5_A 178 LQKKGF-DDIGKTISEIL 194 (423)
T ss_dssp CCTTST-TTHHHHHHHHS
T ss_pred CCCCCH-HHHHHHHHHhh
Confidence 999999 55555655544
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=158.04 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=102.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCCCCceeEEEEEe---------------C--------CeEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN---TSLSHNLKPTEGFNITILQK---------------G--------EYTLNI 103 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~---~~~~~~~~~t~~~~~~~~~~---------------~--------~~~~~l 103 (224)
...++|+++|+.++|||||+++|.+.. +..+.....|++..+..... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 356899999999999999999999543 22211222255433332221 1 168999
Q ss_pred EEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC----CHHHHHh
Q psy12173 104 FELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL----SAEEVGV 179 (224)
Q Consensus 104 ~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~ 179 (224)
|||||++.+...+...+..+|++|+|+|++++.+..+..+.+..+... ...|+++++||+|+.+.. ..+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999988888888999999999999875444444444443322 235899999999997642 2344444
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.+... ...+++++++||++|.|+ +++.+.+.+.+
T Consensus 163 ~l~~~----~~~~~~~i~vSA~~g~gi-~~L~~~l~~~i 196 (408)
T 1s0u_A 163 FVKGT----IAENAPIIPISAHHEANI-DVLLKAIQDFI 196 (408)
T ss_dssp HHTTS----TTTTCCEEEC------CH-HHHHHHHHHHS
T ss_pred HHhhc----CCCCCeEEEeeCCCCCCH-HHHHHHHHHhC
Confidence 44311 111248999999999999 56666665543
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=162.67 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=104.7
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCCCCCceeEEEEEeC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNT-------------------------------SLSHNLKPTEGFNITILQKG 97 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~ 97 (224)
....++|+++|++++|||||+++|+.... ..+.....|.+.....+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 34679999999999999999999975511 01111233555566667778
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHH-----HHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLP-----VAAMELKNLLGDQRLSTVPILVIANKQDVPGA- 171 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-----~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 171 (224)
+..+.+|||||++++...+..++..+|++|+|+|++++++.. ........+.... ...|+++|+||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 899999999999999999888999999999999999975421 2223333333321 23579999999999763
Q ss_pred -CCHHHHHhhcCcc--cccCcccceeEEEeecCCCCcccc
Q psy12173 172 -LSAEEVGVALDLS--SISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 172 -~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
...+++.+.+... ........++|+++||++|.|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1122222222110 001111134899999999999975
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-21 Score=166.14 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=99.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCCch--------hHHHHHHhhccC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGGQE--------NVRRFWNTYFED 122 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~~ 122 (224)
.++|+++|.+|+|||||+|+|.+..+.... ....|.+.......+.+..+.+|||||++ .+......+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 368999999999999999999987754321 22233445566667778899999999985 566677778899
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+|++|+|+|+.++.+.. ..++..++.. .++|+++|+||+|+.... .+ ..+... .... +++++||++
T Consensus 83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~---~~~~~~--lg~~--~~~~iSA~~ 148 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMR--AN---IYDFYS--LGFG--EPYPISGTH 148 (436)
T ss_dssp CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------C---CCSSGG--GSSC--CCEECBTTT
T ss_pred CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccch--hh---HHHHHH--cCCC--CeEEEeCcC
Confidence 99999999999986654 3456665554 578999999999986541 11 111110 0111 689999999
Q ss_pred CCccccchHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAM 218 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l 218 (224)
|.|+ +++.+.+.+.+
T Consensus 149 g~gv-~~L~~~i~~~l 163 (436)
T 2hjg_A 149 GLGL-GDLLDAVAEHF 163 (436)
T ss_dssp TBTH-HHHHHHHHHTG
T ss_pred CCCh-HHHHHHHHHhc
Confidence 9999 55555555544
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=156.41 Aligned_cols=161 Identities=16% Similarity=0.095 Sum_probs=108.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCCCCCceeEEEEEe---------------C--------CeEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN---TSLSHNLKPTEGFNITILQK---------------G--------EYTLNI 103 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~---~~~~~~~~~t~~~~~~~~~~---------------~--------~~~~~l 103 (224)
...++|+++|+.++|||||+++|++.. +..+.....|++..+....+ . ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 456899999999999999999999543 23311222355544333222 0 268999
Q ss_pred EEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHh
Q psy12173 104 FELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGV 179 (224)
Q Consensus 104 ~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~ 179 (224)
|||||++.|.......+..+|++|+|+|++++.+..+..+.+..+... ...|+++++||+|+.+... .+++.+
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 164 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 164 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 999999999888877788999999999999875344444444433322 2368999999999976421 223333
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.+... ....++++++||++|.|+ +.+.+.+.+.+
T Consensus 165 ~l~~~----~~~~~~~i~vSA~~g~gi-~~L~~~l~~~~ 198 (410)
T 1kk1_A 165 FIEGT----VAENAPIIPISALHGANI-DVLVKAIEDFI 198 (410)
T ss_dssp HHTTS----TTTTCCEEECBTTTTBSH-HHHHHHHHHHS
T ss_pred HHHhc----CcCCCeEEEeeCCCCCCH-HHHHHHHHHhC
Confidence 33211 011248999999999999 55665665543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=151.36 Aligned_cols=161 Identities=19% Similarity=0.134 Sum_probs=105.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCc---------hhHHHHHHhhccCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQ---------ENVRRFWNTYFEDTD 124 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~~~~~~d 124 (224)
.|+++|++|+|||||+|+|.+..+...+...+|.++....+.+++..+.+|||+|. +.++..+. .+..+|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD 259 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSD 259 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCC
Confidence 49999999999999999999988655445667778888888888899999999996 33444444 478999
Q ss_pred EEEEEEECCCCC--CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhc-Cc-ccccCcccceeEEEeec
Q psy12173 125 LLVFVVDSADPS--KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVAL-DL-SSISSRQHRIKLIATQA 200 (224)
Q Consensus 125 ~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~Sa 200 (224)
++++|+|++++. ..... ..+..++......+.|+++|+||+|+.+.. ..+..... .+ ...... ..+++++||
T Consensus 260 ~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~--~~~~~~~SA 335 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSP--IFDVIPISA 335 (364)
T ss_dssp EEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSC--EEEEEECBT
T ss_pred EEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCC--CCcEEEEEC
Confidence 999999999875 23322 223333333233578999999999997653 22111110 00 000001 227899999
Q ss_pred CCCCccccchHHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~~ 220 (224)
++|.|+ +.+...+.+.+..
T Consensus 336 ~~g~gi-~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 336 LKRTNL-ELLRDKIYQLATQ 354 (364)
T ss_dssp TTTBSH-HHHHHHHHHHHHH
T ss_pred CCCcCH-HHHHHHHHHHhcc
Confidence 999999 6777777776654
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-20 Score=159.63 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=99.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhHHHH--------HHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENVRRF--------WNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 121 (224)
..++|+++|++|+|||||+|+|.+..+....... .|.++....+..++.++.+|||||..++... ...+++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 4578999999999999999999987543222222 3334555567778899999999998664432 233578
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++++|+|++++.+... ..++..+ ...|+++|+||+|+.+..... ...... ..++++++||+
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~------~~~~~~---~~~~~i~iSAk 366 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT------SLEYPE---NITQIVHTAAA 366 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST------TCCCCT---TCCCEEEEBTT
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH------HHHHhc---cCCcEEEEECC
Confidence 9999999999999866544 3344433 247999999999997652211 111111 22389999999
Q ss_pred CCCccccchHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~ 219 (224)
+|.|+ +++...+.+.+.
T Consensus 367 tg~Gi-~eL~~~i~~~~~ 383 (462)
T 3geh_A 367 QKQGI-DSLETAILEIVQ 383 (462)
T ss_dssp TTBSH-HHHHHHHHHHHT
T ss_pred CCCCH-HHHHHHHHHHHh
Confidence 99999 666666666554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-20 Score=156.35 Aligned_cols=162 Identities=19% Similarity=0.094 Sum_probs=105.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH------------HH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF------------WN 117 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------------~~ 117 (224)
..++|+++|++|+|||||++++.+..+... .....|.+.....+.+++..+.+|||+|..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 468999999999999999999998874321 12233444556677888889999999998543321 12
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--CHHHHHhhcCcccccCcccceeE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--SAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
.+++.+|++++|+|++++.+... ..+...... .++|+++|+||+|+.+.. ..++..+.+........ .+++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 331 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID--YSPL 331 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT--TSCE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCC--CCcE
Confidence 35678999999999998766554 333444433 479999999999997642 23333322211111111 2389
Q ss_pred EEeecCCCCccccchHHHHHHHHHH
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++||++|.|+ +++...+.+.+.+
T Consensus 332 ~~~SA~~g~gv-~~l~~~i~~~~~~ 355 (439)
T 1mky_A 332 IFTSADKGWNI-DRMIDAMNLAYAS 355 (439)
T ss_dssp EECBTTTTBSH-HHHHHHHHHHHHH
T ss_pred EEEECCCCCCH-HHHHHHHHHHHHh
Confidence 99999999999 5555566666554
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=161.44 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=101.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCceeEEEEEeCCeEEEEEEcCC--------chhHHHHHHhh
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSH-NLKPTEGFNITILQKGEYTLNIFELGG--------QENVRRFWNTY 119 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G--------~~~~~~~~~~~ 119 (224)
.+..++|+++|.+|+|||||+|+|.+..+.... ....|.+.......+.+..+.+||||| ++.++.....+
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 355789999999999999999999987754221 222233344555666778999999999 77788888888
Q ss_pred ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEee
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
++.+|++|+|+|..++ +.....++..++.. .++|+++|+||+|+.+.. .+..+...+ ... .++++|
T Consensus 100 ~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l-----g~~--~~~~iS 165 (456)
T 4dcu_A 100 MDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL-----GFG--EPYPIS 165 (456)
T ss_dssp HHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG-----SSS--SEEECC
T ss_pred HhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc-----CCC--ceEEee
Confidence 9999999999998875 44555666676665 589999999999986431 111111111 111 567999
Q ss_pred cCCCCccccchHHHHHHH
Q psy12173 200 APSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~ 217 (224)
|++|.|+ +++.+.+.+.
T Consensus 166 A~~g~gv-~~L~~~i~~~ 182 (456)
T 4dcu_A 166 GTHGLGL-GDLLDAVAEH 182 (456)
T ss_dssp TTTCTTH-HHHHHHHHTT
T ss_pred cccccch-HHHHHHHHhh
Confidence 9999999 4455455443
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.2e-20 Score=149.89 Aligned_cols=136 Identities=19% Similarity=0.298 Sum_probs=103.5
Q ss_pred CCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC----------CCCCHHHHHHHHHHHHhcCC
Q psy12173 84 KPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DPSKLPVAAMELKNLLGDQR 153 (224)
Q Consensus 84 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~ 153 (224)
.+|+|+....+.+++..+.+|||+|+++++..|..++++++++|+|+|++ +.+++.+...++..+.....
T Consensus 146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 45678888888889999999999999999999999999999999999998 67889999999999998766
Q ss_pred CCCCcEEEEEeCCCCCCC-----------------CCHHHHHhhc-----------CcccccC---------cccceeEE
Q psy12173 154 LSTVPILVIANKQDVPGA-----------------LSAEEVGVAL-----------DLSSISS---------RQHRIKLI 196 (224)
Q Consensus 154 ~~~~piilv~nK~Dl~~~-----------------~~~~~~~~~~-----------~~~~~~~---------~~~~~~~~ 196 (224)
..++|++|++||+|+..+ .+.++..+.+ +...... ....+.+.
T Consensus 226 ~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h 305 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN 305 (340)
T ss_dssp GTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred cCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence 678999999999998542 1222322211 1111110 00235899
Q ss_pred EeecCCCCccccchHHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+|||+...||+..|....+.++.
T Consensus 306 ~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 PTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCcHHHHHHHHHHHHHHHH
Confidence 99999999997777666555554
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=152.93 Aligned_cols=156 Identities=17% Similarity=0.103 Sum_probs=102.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC----------C-----------------------CCCCCCceeEEEEEe
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS----------H-----------------------NLKPTEGFNITILQK 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~----------~-----------------------~~~~t~~~~~~~~~~ 96 (224)
...++|+++|++++|||||+++|+....... . ....|++.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3568999999999999999999986531000 0 011233344455666
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--H
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--A 174 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~ 174 (224)
++..+.+|||||+++|...+..++..+|++|+|+|++++.. ....+++...... ...|+++|+||+|+.+... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence 78899999999999999888888999999999999998753 3344444433222 2246999999999976311 1
Q ss_pred HHHHhhcCc--ccccCcccceeEEEeecCCCCccccc
Q psy12173 175 EEVGVALDL--SSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 175 ~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+++.+.+.. .........++++++||++|.|+++.
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 112211110 00000011248999999999999764
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-20 Score=158.18 Aligned_cols=154 Identities=15% Similarity=0.204 Sum_probs=101.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----------------------------CCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG--NTSLS-----------------------------HNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~--~~~~~-----------------------------~~~~~t~~~~~~~~~~~~ 98 (224)
+..++|+++|++++|||||+++|+.. .+... .....|++.....+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35689999999999999999999864 22210 012345555556677788
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHH-------HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPV-------AAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
..+.+|||||+++|...+..++..+|++|+|+|+++ .+++. ..+.+...... .-.|+++++||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence 999999999999999988889999999999999999 45553 23333222221 22469999999999763
Q ss_pred -CCH-------HHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 172 -LSA-------EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 172 -~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.+. +++.+.+....+... .++++++||++|.|+.+.
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTN--KVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCT--TCEEEECBTTTTBTTTBC
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcC--CceEEEeecccCcccccc
Confidence 111 222222211111111 248999999999999654
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=154.14 Aligned_cols=84 Identities=31% Similarity=0.547 Sum_probs=75.6
Q ss_pred CCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCC----------CCCHHHHHHHHHHHHhcCCCC
Q psy12173 86 TEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSAD----------PSKLPVAAMELKNLLGDQRLS 155 (224)
Q Consensus 86 t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 155 (224)
|+|.....+.+++..+.+|||+|+++++..+..++++++++|+|+|+++ .+++.+...|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4456666777788999999999999999999999999999999999999 889999999999998876667
Q ss_pred CCcEEEEEeCCCCC
Q psy12173 156 TVPILVIANKQDVP 169 (224)
Q Consensus 156 ~~piilv~nK~Dl~ 169 (224)
+.|++|++||+|+.
T Consensus 284 ~~piiLvgNK~DL~ 297 (402)
T 1azs_C 284 TISVILFLNKQDLL 297 (402)
T ss_dssp SCCEEEEEECHHHH
T ss_pred CCeEEEEEEChhhh
Confidence 89999999999984
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-21 Score=169.27 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=110.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+.++|+++|++++|||||+++|.+..+........|..+....+.. ++..+.+|||||++.+...+..+++.+|++|+|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 4578999999999999999999987655422223344444444544 456899999999999999888889999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC---CHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL---SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
+|++++..... ...+..+.. .++|+++++||+|+.+.. ...++.+ ..... ......++++++||++|.|+
T Consensus 83 VDa~dg~~~qt-~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~-~~~~~-e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 83 VAADDGVMKQT-VESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLA-YDVVC-EDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp CBSSSCCCHHH-HHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHH-TTSCC-CCSSSSEEECCCCSSSSCSS
T ss_pred EECCCCccHHH-HHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHh-hhhhH-HhcCCCceEEEEECCCCCCc
Confidence 99999755433 344444433 478999999999997531 1122222 11111 11122358999999999999
Q ss_pred ccchHHHHHHHH
Q psy12173 207 LHVSVVEAEQAM 218 (224)
Q Consensus 207 ~~~~~~~i~~~l 218 (224)
+++...+...+
T Consensus 156 -~eLle~I~~l~ 166 (537)
T 3izy_P 156 -MALAEATIALA 166 (537)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hhHHHHHHHhh
Confidence 55555555443
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-21 Score=166.09 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=104.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+.++|+++|++++|||||+++|....+........|.......+.+++..+.+|||||++.|...+...+..+|++++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV 82 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVV 82 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence 45799999999999999999999765443222223333334445556778999999999999988888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCc--ccceeEEEeecCCCCcccc
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSR--QHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gv~~ 208 (224)
|++++... +..+.+..... .++|+++++||+|+.+.. .+++.+.+........ ...++++++||++|.|+++
T Consensus 83 da~~g~~~-qT~e~l~~~~~----~~vPiIVviNKiDl~~~~-~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 83 AADDGVMP-QTIEAIQHAKA----AQVPVVVAVNKIDKPEAD-PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp ETTTBSCT-TTHHHHHHHHH----TTCCEEEEEECSSSSTTC-CCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred ecccCccH-HHHHHHHHHHh----cCceEEEEEEeccccccC-HHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 99884322 22233333322 478999999999997531 1122222211111111 1125899999999999954
Q ss_pred chH
Q psy12173 209 VSV 211 (224)
Q Consensus 209 ~~~ 211 (224)
.+.
T Consensus 157 Lle 159 (501)
T 1zo1_I 157 LLD 159 (501)
T ss_dssp HHH
T ss_pred hhh
Confidence 443
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-19 Score=138.72 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=83.4
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CCCCceeEEEEEeCCeEEEEEEcCCc-----------hhHHHH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNL--KPTEGFNITILQKGEYTLNIFELGGQ-----------ENVRRF 115 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~D~~G~-----------~~~~~~ 115 (224)
....++|+++|++|+|||||++++++..+...... ..|..+....+.+++..+.+|||||. ..+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999999887553222 33455666677888999999999993 345555
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCC
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGA 171 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 171 (224)
....++.+|++|+|+|+++.... ...++..+..... ....|+++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 56667889999999999876442 2233333322100 024699999999998765
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=143.67 Aligned_cols=128 Identities=25% Similarity=0.379 Sum_probs=93.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhcc----CCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFE----DTD 124 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~----~~d 124 (224)
...++|+++|++|+|||||++++.+..+... ....++.. ..+....+.+|||||++.+...+..++. .+|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-----ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-----eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence 4568999999999999999999999875431 01122222 1225678999999999877655544444 489
Q ss_pred EEEEEEECC-CCCCHHHHHHHHHHHHhcC---CCCCCcEEEEEeCCCCCCCCCHHHHHhhcC
Q psy12173 125 LLVFVVDSA-DPSKLPVAAMELKNLLGDQ---RLSTVPILVIANKQDVPGALSAEEVGVALD 182 (224)
Q Consensus 125 ~ii~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 182 (224)
++++|+|++ +.+++.....|+..+.... ...+.|+++|+||+|+.+....+++.+.++
T Consensus 121 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred EEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 999999999 7888888888888877542 125799999999999988877766665553
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=151.38 Aligned_cols=146 Identities=9% Similarity=0.046 Sum_probs=106.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
+|+++|++++|||||+++|+ ....|++.....+..++..+.+|||||+++|.......+..+|++|+|+| +
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~ 93 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P 93 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence 99999999999999999998 22356666677777788899999999999998877777899999999999 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcE-EEEEe-CCCCCCCCCH----HHHHhhcCcccccCcccceeEEE--eecCC---
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPI-LVIAN-KQDVPGALSA----EEVGVALDLSSISSRQHRIKLIA--TQAPS--- 202 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~--- 202 (224)
+ ..+.+..+++..+.. .++|. ++++| |+|+ +.... +++.+.++... .. .+++++ +||++
T Consensus 94 ~-g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~--~~--~~~ii~~~~SA~~~~~ 163 (370)
T 2elf_A 94 Q-GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV--LQ--DWECISLNTNKSAKNP 163 (370)
T ss_dssp T-CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST--TT--TCEEEECCCCTTSSST
T ss_pred C-CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC--CC--ceEEEecccccccCcC
Confidence 4 455566666555443 26776 89999 9999 43211 23333332111 11 238999 99999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+ +++.+.+.+.+.
T Consensus 164 g~gi-~~L~~~l~~~~~ 179 (370)
T 2elf_A 164 FEGV-DELKARINEVAE 179 (370)
T ss_dssp TTTH-HHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHhhcc
Confidence 9999 555566665543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=146.23 Aligned_cols=154 Identities=20% Similarity=0.291 Sum_probs=101.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCch-hHHH--------HHHhhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQE-NVRR--------FWNTYF 120 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~-~~~~--------~~~~~~ 120 (224)
+..+|+++|++|+|||||++++.+..+...+... .|.......+..++.++.+|||||+. .... .....+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4458999999999999999999998754322222 23233344566678899999999987 3322 123457
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
+.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+... .+++.+.++. +........++++||
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~--l~~~~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQF--LASQMNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHHH--HHTTSCCSEEEECCT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHHH--HHHhcCcCceEEEEC
Confidence 88999999999977 34444555554443 47899999999999762 2222222110 000000126999999
Q ss_pred CCCCccccchHHHHH
Q psy12173 201 PSNLHHLHVSVVEAE 215 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~ 215 (224)
++|.|+ +.+.+.+.
T Consensus 157 ~~g~~v-~~l~~~i~ 170 (301)
T 1ega_A 157 ETGLNV-DTIAAIVR 170 (301)
T ss_dssp TTTTTH-HHHHHHHH
T ss_pred CCCCCH-HHHHHHHH
Confidence 999999 45544444
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=160.89 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=105.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------------------CCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSH-------------------------------NLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~ 98 (224)
...++|+++|++++|||||+++|+........ ....|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 46789999999999999999999976432210 02335555666677788
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC---CH---HHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS---KL---PVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..+.+|||||++.+...+..++..+|++|+|+|++++. ++ ......+... ... ...|+|+|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHc--CCCeEEEEEecccccchh
Confidence 99999999999999999888999999999999998741 11 1222222222 221 234699999999997631
Q ss_pred --CHHHHHhhcCcc--cccCcccceeEEEeecCCCCccccc
Q psy12173 173 --SAEEVGVALDLS--SISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 173 --~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
..+++.+.+... ........++++++||++|.|+++.
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 122222222100 0001111348999999999999654
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=142.76 Aligned_cols=164 Identities=15% Similarity=0.125 Sum_probs=101.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhH-----------HHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN-TSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENV-----------RRFW 116 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~-~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~-----------~~~~ 116 (224)
...++|+++|++|+|||||++++++.. +....... .|.......+.+++..+.+|||||+..+ ....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999877 33311222 3445566667788899999999997543 2233
Q ss_pred HhhccCCCEEEEEEECCCCCCHHH-HHHHHHHHHhcCCCCCCcEEEEEe-CCCCCCCCCHHH---------HHhhcCccc
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPV-AAMELKNLLGDQRLSTVPILVIAN-KQDVPGALSAEE---------VGVALDLSS 185 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~n-K~Dl~~~~~~~~---------~~~~~~~~~ 185 (224)
...++.+|++++|+|+++...... ...++....... ...|.++++| |+|+... ...+ +.+..+.
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~-- 174 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA-- 174 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH--
T ss_pred HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH--
Confidence 446789999999999986322211 223333332211 1456666666 9999754 3332 1111111
Q ss_pred ccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
...+.+....+++||++|.|+ +++...+.+.+.
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv-~~l~~~i~~~~~ 207 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQV-KELMDCIEDLLM 207 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHH-HHHHHHHHHHHH
T ss_pred hCCeEEEecCcccccccHHHH-HHHHHHHHHHHH
Confidence 111111001179999999999 555556655554
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-19 Score=156.06 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=102.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCCC-------------CCCCCCCceeEEEEEeC-----CeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSLS-------------HNLKPTEGFNITILQKG-----EYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~~-------------~~~~~t~~~~~~~~~~~-----~~~~~l~D~~G~~ 110 (224)
+.++|+++|+.++|||||+++|+... +... .....|+......+.+. +..+.+|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632 1100 00112222333344443 3789999999999
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH---HHHHhhcCccccc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA---EEVGVALDLSSIS 187 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 187 (224)
++...+...++.+|++|+|+|++++.+......|.... . .++|+++++||+|+.+.... +++.+.++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID--- 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC---
Confidence 99998888899999999999999988877666555443 2 37899999999999875322 2333333221
Q ss_pred CcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 188 SRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
.. +++++||++|.|+ +++.+.+.+.
T Consensus 155 --~~--~vi~vSAktg~GI-~~Ll~~I~~~ 179 (599)
T 3cb4_D 155 --AT--DAVRCSAKTGVGV-QDVLERLVRD 179 (599)
T ss_dssp --CT--TCEEECTTTCTTH-HHHHHHHHHH
T ss_pred --cc--eEEEeecccCCCc-hhHHHHHhhc
Confidence 11 5899999999999 5555555444
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-20 Score=159.31 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=91.5
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc--CCCCC-----------------------------CCCCCCCCceeEEEEEe
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISS--GNTSL-----------------------------SHNLKPTEGFNITILQK 96 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~--~~~~~-----------------------------~~~~~~t~~~~~~~~~~ 96 (224)
.....++|+++|+.++|||||+++|+. +.+.. +.....|++.....+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 345678999999999999999999974 21110 00123455555556667
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC---CHH---HHHHHHHHHHhcCCCCCCc-EEEEEeCCCCC
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS---KLP---VAAMELKNLLGDQRLSTVP-ILVIANKQDVP 169 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 169 (224)
++..+.+|||||+++|...+...+..+|++|+|+|++++. +|+ ...+.+.... . .++| +++++||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~---~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-T---QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-H---TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-H---cCCCEEEEEEECccCC
Confidence 7899999999999999988888899999999999999862 222 2222222222 2 3676 99999999996
Q ss_pred CC-CCHH-------HHHhhcCcc-cccCcccceeEEEeecCCCCccccch
Q psy12173 170 GA-LSAE-------EVGVALDLS-SISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 170 ~~-~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
.. .+.+ ++.+.+... .+. ...+++++++||++|.|+++.+
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~-~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYN-SKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCC-HHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCC-ccCCceEEeccccccccccccc
Confidence 52 1221 222222110 000 0113489999999999997654
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.9e-19 Score=154.70 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=103.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCC-------------CCCCCCCCceeEEEEEeC-----CeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSL-------------SHNLKPTEGFNITILQKG-----EYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~-------------~~~~~~t~~~~~~~~~~~-----~~~~~l~D~~G~~ 110 (224)
+.++|+++|+.++|||||+++|+... +.. +.....|+......+.+. ...+.+|||||++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 56799999999999999999998531 110 000112222223334332 3789999999999
Q ss_pred hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH----HHhhcCcccc
Q psy12173 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE----VGVALDLSSI 186 (224)
Q Consensus 111 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~ 186 (224)
++.......+..+|++|+|+|++++.+......|.... . .++|+++++||+|+.+.. .++ +.+.++.
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~--- 155 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGL--- 155 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCC---
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhhCC---
Confidence 99988888899999999999999998877666555443 2 378999999999997653 333 3332222
Q ss_pred cCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 187 SSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
... +++++||++|.|+ +++.+.+.+.
T Consensus 156 --~~~--~vi~vSAktg~GI-~~Lle~I~~~ 181 (600)
T 2ywe_A 156 --DPE--EAILASAKEGIGI-EEILEAIVNR 181 (600)
T ss_dssp --CGG--GCEECBTTTTBSH-HHHHHHHHHH
T ss_pred --Ccc--cEEEEEeecCCCc-hHHHHHHHHh
Confidence 112 6899999999999 5555555443
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-19 Score=150.72 Aligned_cols=149 Identities=18% Similarity=0.122 Sum_probs=102.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC--------CCCCC---------CCCCCCCceeEEEEEeCCeEEEEEEcCCchhH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG--------NTSLS---------HNLKPTEGFNITILQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~--------~~~~~---------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~ 112 (224)
...++|+++|++++|||||+++|.+. .+... .....|.......+...+..+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 35689999999999999999999873 22110 01123444444555667789999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-HH----HHHhhcCcccc
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-AE----EVGVALDLSSI 186 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 186 (224)
...+...+..+|++|+|+|++++.. ....+++..+.. .++| +++++||+|+.++.. .+ ++.+.++...+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 9888888999999999999998754 344555554433 3677 899999999975311 11 22222211111
Q ss_pred cCcccceeEEEeecCCCCc
Q psy12173 187 SSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 187 ~~~~~~~~~~~~Sa~~~~g 205 (224)
... .++++++||++|.|
T Consensus 164 ~~~--~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 164 PGD--EVPVIRGSALLALE 180 (405)
T ss_dssp CTT--TSCEEECCHHHHHH
T ss_pred ccc--CCCEEEccHHHhhh
Confidence 111 23899999999987
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-19 Score=155.22 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=89.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC-----------------CC-----CCCCCCCCceeEEEEEeCCeEEEEEEcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNT-----------------SL-----SHNLKPTEGFNITILQKGEYTLNIFELGG 108 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~-----------------~~-----~~~~~~t~~~~~~~~~~~~~~~~l~D~~G 108 (224)
...+|+++|++|+|||||+++|+.... .. ......|.......+.+++..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 467999999999999999999962110 00 00123355566777888899999999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
++++......+++.+|++|+|+|++++.+.... ..+..+.. .++|+++++||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccc
Confidence 999998888899999999999999998665544 33443332 37899999999999765
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=150.01 Aligned_cols=154 Identities=11% Similarity=0.097 Sum_probs=104.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG--NTSL-----------------------------SHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~--~~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 98 (224)
+..++|+++|++++|||||+++|++. .+.. +.....|++.....+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35689999999999999999999864 1111 0013356666666777788
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC---CHH---HHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS---KLP---VAAMELKNLLGDQRLSTVP-ILVIANKQDVPGA 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 171 (224)
..+.+|||||+++|.......+..+|++|+|+|++++. +|+ +..+.+... .. .+.| +++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 99999999999999998888899999999999999752 111 233333322 22 2555 9999999999742
Q ss_pred --CCHHHHHh----hcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 172 --LSAEEVGV----ALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 172 --~~~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
...+++.+ .+....+... .++++++||++|.|+++.
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~--~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPK--TVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGG--GCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcc--CceEEEeecccCcCcccc
Confidence 11112222 1111111101 248999999999999643
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-19 Score=149.48 Aligned_cols=147 Identities=16% Similarity=0.043 Sum_probs=98.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-------CCCC---------CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN-------TSLS---------HNLKPTEGFNITILQKGEYTLNIFELGGQENVRRF 115 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~-------~~~~---------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 115 (224)
.++|+++|++++|||||+++|.... +... .....|++.....+..++..+.+|||||+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5799999999999999999998731 1100 01122333334445556789999999999999888
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-H----HHHHhhcCcccccCc
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-A----EEVGVALDLSSISSR 189 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~ 189 (224)
+...+..+|++|+|+|++++... +..+.+..+. . .++| +++++||+|+.++.. . +++.+.++...+...
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~-~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMP-QTREHLLLAR-Q---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHH-H---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHHH-H---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88889999999999999997543 3344443333 2 3677 789999999975311 1 122222211111111
Q ss_pred ccceeEEEeecCCCCc
Q psy12173 190 QHRIKLIATQAPSNLH 205 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~g 205 (224)
.++++++||++|.|
T Consensus 158 --~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 158 --ETPIIVGSALCALE 171 (397)
T ss_dssp --TSCEEECCHHHHHT
T ss_pred --cCcEEEeehhhccc
Confidence 23899999999875
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-19 Score=150.21 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=88.1
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC----------CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCC
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA----------DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQ 166 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 166 (224)
+...+.+|||+|+++++..+..++++++++|+|+|++ +.+++.+...|+..+.......+.|++|++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999998 778899999999999876555689999999999
Q ss_pred CCCCC----CC-------------------HHHHHhhcCcc--cc---c--C--cccceeEEEeecCCCCccccchHHHH
Q psy12173 167 DVPGA----LS-------------------AEEVGVALDLS--SI---S--S--RQHRIKLIATQAPSNLHHLHVSVVEA 214 (224)
Q Consensus 167 Dl~~~----~~-------------------~~~~~~~~~~~--~~---~--~--~~~~~~~~~~Sa~~~~gv~~~~~~~i 214 (224)
|+.++ .. .++..+..... .. . . ....+.+++|||+++.||++.|...+
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 98432 00 12222211100 00 0 0 01123679999999999977776655
Q ss_pred HHHHH
Q psy12173 215 EQAMY 219 (224)
Q Consensus 215 ~~~l~ 219 (224)
..++.
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-18 Score=136.99 Aligned_cols=158 Identities=14% Similarity=0.141 Sum_probs=97.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCCCC----------------------Ccee--------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH----NLKPT----------------------EGFN-------------- 90 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~----~~~~t----------------------~~~~-------------- 90 (224)
..++|+++|.+|+|||||+++|++..+.+.. ...|+ +.+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998864211 11121 0000
Q ss_pred -----------EEEEEe-CCeEEEEEEcCCch-------------hHHHHHHhhccCCCEEE-EEEECCCCCCHHHHHHH
Q psy12173 91 -----------ITILQK-GEYTLNIFELGGQE-------------NVRRFWNTYFEDTDLLV-FVVDSADPSKLPVAAME 144 (224)
Q Consensus 91 -----------~~~~~~-~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~ 144 (224)
...+.. ....+.+|||||.. .+......+++.++.++ +|+|+++..+......+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 000111 13689999999953 45566677788888776 79999886443333233
Q ss_pred HHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 145 LKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 145 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+..+ .. .+.|+++|+||+|+.+... ..+. ++..........++++++||++|.|++ ++...+.+
T Consensus 185 ~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~v~~~SA~~~~gi~-~l~~~l~~ 249 (299)
T 2aka_B 185 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDV---LENKLLPLRRGYIGVVNRSQKDIDGKK-DITAALAA 249 (299)
T ss_dssp HHHH-CT---TCSSEEEEEECGGGSCTTCCCHHH---HTTCSSCCTTCEEECCCCCCBCTTSCB-CHHHHHHH
T ss_pred HHHh-CC---CCCeEEEEEEccccCCCCchHHHH---HhCCcCcCCCCcEEEECCChhhccccc-cHHHHHHH
Confidence 3333 22 4789999999999976522 1222 111100111112378999999999994 44444443
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-20 Score=162.07 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=82.2
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCCCCCCCCCceeEEEEEeC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGN-------------------------------TSLSHNLKPTEGFNITILQKG 97 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~-------------------------------~~~~~~~~~t~~~~~~~~~~~ 97 (224)
....++|+++|++++|||||+++|+... +..+.....|.+.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3467899999999999999999996421 000001123444555556667
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC---CH---HHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCC
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS---KL---PVAAMELKNLLGDQRLSTVP-ILVIANKQDVPG 170 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 170 (224)
+..+.+|||||++.|...+...+..+|++|+|+|++++. .+ ......+..+.. .++| +|+|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 789999999999998877777788999999999999753 11 222223322222 2555 999999999975
Q ss_pred C--CCH----HHHHhhc-CcccccCcccceeEEEeecCCCCcccc
Q psy12173 171 A--LSA----EEVGVAL-DLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 171 ~--~~~----~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
. ... +++.+.+ ....+ ....++++++||++|.|+++
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~--~~~~~~ii~iSA~~G~gI~e 372 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGF--KTSNVHFVPISAISGTNLIQ 372 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCC--CGGGEEEEEECSSSCSSSCS
T ss_pred ccHHHHHHHHHHHHHHHHHhhCC--CccceEEEEEecccCccccc
Confidence 2 111 2222222 11111 11234899999999999964
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=152.42 Aligned_cols=163 Identities=18% Similarity=0.135 Sum_probs=105.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCCCCCceeEEEEE----------------eCCeEEEEEEcCCchhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH--NLKPTEGFNITILQ----------------KGEYTLNIFELGGQENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~--~~~~t~~~~~~~~~----------------~~~~~~~l~D~~G~~~~ 112 (224)
+.++|+++|++++|||||+++|.+..+.... ...++++....... +....+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4679999999999999999999976543211 12334444333321 11236999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH--------------H---
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA--------------E--- 175 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------------~--- 175 (224)
...+...++.+|++|+|+|++++-.-. ....+..+.. .++|+++++||+|+...... +
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~q-T~e~l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQ-TQEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHh-HHHHHHHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 888888889999999999999953322 2233333322 47899999999999653210 1
Q ss_pred --------HHHhhc---Cccc-----ccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 176 --------EVGVAL---DLSS-----ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 176 --------~~~~~~---~~~~-----~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++.+.+ .+.. .......++++++||++|.|+ +++.+.+...+.
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI-~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGI-PELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCc-hhHHHHHHhhcc
Confidence 111111 1100 001122348999999999999 555656655443
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-18 Score=137.57 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=82.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------CCCCceeEEEEEe--CC--eEEEEEEcCCc-------hhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-------KPTEGFNITILQK--GE--YTLNIFELGGQ-------ENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-------~~t~~~~~~~~~~--~~--~~~~l~D~~G~-------~~~ 112 (224)
..++|+++|.+|+|||||+|+|+....... .+ .+|++........ ++ ..+.+|||||. +.+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 468999999999999999999887653331 22 5566655555443 33 58999999997 223
Q ss_pred HHHH-------Hhhcc-------------CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 113 RRFW-------NTYFE-------------DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 113 ~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
.... ..++. .+|+++++++.+..........++..+ .. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 3222 22222 378999999877643223233333333 22 79999999999986542
Q ss_pred CHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHH
Q psy12173 173 SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAE 215 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~ 215 (224)
......+.+.. .+ ...+++++++||+++.|+++ +...+.
T Consensus 161 e~~~~~~~i~~-~l--~~~~i~v~~~sa~~~~~~~~-l~~~l~ 199 (274)
T 3t5d_A 161 ECQQFKKQIMK-EI--QEHKIKIYEFPETDDEEENK-LVKKIK 199 (274)
T ss_dssp HHHHHHHHHHH-HH--HHTTCCCCCC------------CHHHH
T ss_pred HHHHHHHHHHH-HH--HHcCCeEEcCCCCCChhHHH-HHHHHh
Confidence 22222221110 01 11223789999999999944 433443
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=154.05 Aligned_cols=148 Identities=17% Similarity=0.073 Sum_probs=98.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC-------CCC---------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN-------TSL---------SHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~-------~~~---------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
...++|+++|++++|||||+++|++.. +.. +.....|+......+..++..+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 457899999999999999999998631 100 0011123333333455567899999999999999
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-H----HHHHhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-A----EEVGVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~----~~~~~~~~~~~~~ 187 (224)
..+...+..+|++|+|+|++++... +..+++..+.. .++| +|+++||+|+.++.. . +++.+.+....+.
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 8888889999999999999987433 34445544433 3677 899999999976311 1 1222222211111
Q ss_pred CcccceeEEEeecCCCC
Q psy12173 188 SRQHRIKLIATQAPSNL 204 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~ 204 (224)
.. .++++++||++|.
T Consensus 449 ~~--~vp~IpvSAktG~ 463 (1289)
T 3avx_A 449 GD--DTPIVRGSALKAL 463 (1289)
T ss_dssp TT--TCCEEECCSTTTT
T ss_pred cc--ceeEEEEEeccCC
Confidence 11 2489999999994
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=143.24 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=98.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CCC--------------C------CCCCCCCceeEEEEEeCCeEEEEEEcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TSL--------------S------HNLKPTEGFNITILQKGEYTLNIFELGG 108 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~--------------~------~~~~~t~~~~~~~~~~~~~~~~l~D~~G 108 (224)
+.++|+++|++++|||||+++|+... +.. . .....|.......+.+++..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 46899999999999999999999632 100 0 0111233344556777889999999999
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCccc
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDLSS 185 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~ 185 (224)
++++......++..+|++|+|+|++++.... ....+.. ... .++|+++++||+|+..... .+++.+.++...
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~-~~~---~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~ 166 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEV-TRL---RDTPILTFMNKLDRDIRDPMELLDEVENELKIGC 166 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHH-HTT---TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEE
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHH-HHH---cCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCc
Confidence 9998887778899999999999999874322 2233332 222 4789999999999977533 344555554322
Q ss_pred ccCcccceeEEEeecCCCCccc
Q psy12173 186 ISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 186 ~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
.. ..+-.+|++++.|+.
T Consensus 167 ~~-----~~~pi~sa~~~~Gv~ 183 (529)
T 2h5e_A 167 AP-----ITWPIGCGKLFKGVY 183 (529)
T ss_dssp EE-----SEEEESCGGGCCEEE
T ss_pred cc-----eecceecccCcceee
Confidence 11 123336777766663
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=132.35 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=82.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCceeEEEEEeCCeEEEEEEcCCchhHHHH-------HHhhc-
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKP-TEGFNITILQKGEYTLNIFELGGQENVRRF-------WNTYF- 120 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~~~- 120 (224)
+..++|+++|++|+|||||++++++..+.....+.+ |.......+..++..+.+|||||++++... ...++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 357899999999999999999999988533223333 445566667788999999999998654321 11112
Q ss_pred -cCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCC-CCCCcEEEEEeCCCCCC
Q psy12173 121 -EDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQR-LSTVPILVIANKQDVPG 170 (224)
Q Consensus 121 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 170 (224)
..+|++++|++++... +... ..++..+..... ....|+++|+||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 3789999999998764 4433 344444433211 01249999999999953
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-18 Score=143.80 Aligned_cols=157 Identities=14% Similarity=0.185 Sum_probs=78.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------CCCCCceeEEEEEe--CC--eEEEEEEcCCc-------hhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHN-------LKPTEGFNITILQK--GE--YTLNIFELGGQ-------ENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~-------~~~t~~~~~~~~~~--~~--~~~~l~D~~G~-------~~~ 112 (224)
..++|+++|++|+|||||+++|.+........ ..+|.+........ .+ ..+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999987654222111 11344443333322 33 47999999998 444
Q ss_pred HHHHH-------hhccC-------------CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 113 RRFWN-------TYFED-------------TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 113 ~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..+.. .+++. +|+++++++.+ ..++......+...+. .++|+|+|+||+|+....
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCHH
Confidence 33332 33332 23455555532 3456665543333322 478999999999997642
Q ss_pred CHH----HHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 173 SAE----EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 173 ~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
... ++.+.++ ..+++++++||++|.| ++.|...+......
T Consensus 191 ev~~~k~~i~~~~~-------~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 191 ERERLKKRILDEIE-------EHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHHHTT-------CC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-------HCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 222 2222222 1234899999999998 67777666555443
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=140.57 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=114.4
Q ss_pred cccccccccccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-eEEEEEEcCCchhH-------
Q psy12173 41 FEEVSKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV------- 112 (224)
Q Consensus 41 ~~~~~~~~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~D~~G~~~~------- 112 (224)
++.....+-.....|+++|++|+|||||++++.+......+....|...+...+..++ ..+.+||+||..+.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCS
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhh
Confidence 3444444444557899999999999999999998764332233445556666666665 88999999997421
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCccc
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQH 191 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 191 (224)
........+.++.+++++|++ .+++.++..+..++..... ....|.++++||+|+......+++.+.+. ....
T Consensus 226 ~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~ 299 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGL 299 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTS
T ss_pred hHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCC
Confidence 111222356799999999998 5567766666665554321 13589999999999976422223333221 1222
Q ss_pred ceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 192 RIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 192 ~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
+++.+||+++.|+ +++...+.+.+..
T Consensus 300 --~vi~iSA~~g~gi-~eL~~~i~~~l~~ 325 (416)
T 1udx_A 300 --AVLPVSALTGAGL-PALKEALHALVRS 325 (416)
T ss_dssp --CEEECCTTTCTTH-HHHHHHHHHHHHT
T ss_pred --eEEEEECCCccCH-HHHHHHHHHHHHh
Confidence 8999999999999 6666677666654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-17 Score=124.73 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=94.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCCeEEEEEEcCCch----------hHHHHH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGEYTLNIFELGGQE----------NVRRFW 116 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~D~~G~~----------~~~~~~ 116 (224)
.....+|+++|++|+|||||++++.+..+.. .+.++.+.. ...+..++ .+.+|||||.. .++...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~--~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLA--RTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccc--cccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 3456799999999999999999999877433 223333321 22233333 67899999973 233333
Q ss_pred Hhhc---cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCc
Q psy12173 117 NTYF---EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSR 189 (224)
Q Consensus 117 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~ 189 (224)
..++ ..++++++++|++++.+... ..+..+... .+.|+++++||+|+..... .......+. ..
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~-----~~ 169 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVL-----AF 169 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG-----GG
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHH-----hc
Confidence 3333 57899999999998766532 222233332 4789999999999865411 112222221 11
Q ss_pred ccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 190 QHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
...+.++++||+++.|+ +++...+.+.+.
T Consensus 170 ~~~~~~~~~Sal~~~~~-~~l~~~l~~~~~ 198 (210)
T 1pui_A 170 NGDVQVETFSSLKKQGV-DKLRQKLDTWFS 198 (210)
T ss_dssp CSCEEEEECBTTTTBSH-HHHHHHHHHHHC
T ss_pred CCCCceEEEeecCCCCH-HHHHHHHHHHHh
Confidence 11237899999999999 666666665543
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=141.52 Aligned_cols=117 Identities=21% Similarity=0.116 Sum_probs=88.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC--CCCC----------------CCCCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG--NTSL----------------SHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~--~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+.++|+++|++|+|||||+++|+.. .+.. .....+|+......+.+++..+.+|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 45789999999999999999999842 1100 00223556666677778899999999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+...+..+++.+|++|+|+|++++.+......| ..+.. .++|+++++||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccC
Confidence 998888889999999999999998776655443 33333 37999999999999765
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=129.73 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=75.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CCCCC-ceeE----------------------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHN----LKPTE-GFNI---------------------------------- 91 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~----~~~t~-~~~~---------------------------------- 91 (224)
..++|+++|.+|+|||||+++|++..+.+... ..++. ....
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 45799999999999999999999988622111 01100 0000
Q ss_pred ------------------EE---EEeCCeEEEEEEcCCchh-------------HHHHHHhhccCCCEEEEEEECCCCCC
Q psy12173 92 ------------------TI---LQKGEYTLNIFELGGQEN-------------VRRFWNTYFEDTDLLVFVVDSADPSK 137 (224)
Q Consensus 92 ------------------~~---~~~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s 137 (224)
.. ......++.+|||||... +......+++.+|++++|+|.++...
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 00 111346799999999753 44566777899999999999854332
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 138 LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.......+...+.. .+.|+++|+||+|+...
T Consensus 183 ~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 183 ANSDALQLAKEVDP---EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp TTCSHHHHHHHHCS---SCSSEEEEEECTTSSCS
T ss_pred hhhHHHHHHHHhCC---CCCcEEEEEcCcccCCc
Confidence 11111122222222 47899999999999765
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=141.79 Aligned_cols=163 Identities=13% Similarity=0.179 Sum_probs=102.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeE--------EEEE-------------------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNI--------TILQ------------------------- 95 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~--------~~~~------------------------- 95 (224)
...++|+++|.+|+|||||+|+|.+..+.+.+. .|++. +.. ....
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~-~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDV-NPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCC-CTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCC-CCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 457899999999999999999999887544222 23221 000 0010
Q ss_pred ---------------------eCC----eEEEEEEcCCchhH---HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHH
Q psy12173 96 ---------------------KGE----YTLNIFELGGQENV---RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKN 147 (224)
Q Consensus 96 ---------------------~~~----~~~~l~D~~G~~~~---~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~ 147 (224)
... ..+.+|||||.... ......+++.+|++|+|+|++++.+..+...+...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 000 36899999997653 34556678999999999999998777665443322
Q ss_pred HHhcCCCCCCcEEEEEeCCCCCCCC-----CHHH-------HHhhcC--cccccC----cccceeEEEeecC--------
Q psy12173 148 LLGDQRLSTVPILVIANKQDVPGAL-----SAEE-------VGVALD--LSSISS----RQHRIKLIATQAP-------- 201 (224)
Q Consensus 148 ~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~-------~~~~~~--~~~~~~----~~~~~~~~~~Sa~-------- 201 (224)
... .+.|+++|+||+|+.... ..++ +.+.+. +..... ..+..+++++||+
T Consensus 226 -l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 -IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp -TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred -HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 222 367899999999986431 1111 211110 000000 0122379999999
Q ss_pred ------CCCccccchHHHHHHHH
Q psy12173 202 ------SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ------~~~gv~~~~~~~i~~~l 218 (224)
+|.|+ +.+...+.+.+
T Consensus 302 ~~~~~~~~~Gi-~~L~~~L~~~l 323 (695)
T 2j69_A 302 NPQADLDGTGF-PKFMDSLNTFL 323 (695)
T ss_dssp CTTCCCTTSSH-HHHHHHHHHHH
T ss_pred CchhhhhccCH-HHHHHHHHHHH
Confidence 99999 66666666655
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=136.42 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=86.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC--C---------C-------CCCCCceeEEEEEeCCeEEEEEEcCCchhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS--H---------N-------LKPTEGFNITILQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--~---------~-------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~ 112 (224)
...+|+++|+.|+|||||+++|........ . . ...+.......+.+.+..+.+|||||++++
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 467999999999999999999995432210 0 0 112334455566678899999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
......+++.+|++++|+|+++..... ...++..+.. .++|+++++||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 988888899999999999988874433 3344544443 378999999999998
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-16 Score=128.91 Aligned_cols=150 Identities=14% Similarity=0.102 Sum_probs=94.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-----------------------------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF----------------------------------------- 89 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~----------------------------------------- 89 (224)
..++|+++|++|+|||||+++|.+..+.+......|...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 445999999999999999999999876332111111000
Q ss_pred -----------e--EEEEE-eCCeEEEEEEcCCchhH-------------HHHHHhhccCCCEEEEEEECCCCCCHHHHH
Q psy12173 90 -----------N--ITILQ-KGEYTLNIFELGGQENV-------------RRFWNTYFEDTDLLVFVVDSADPSKLPVAA 142 (224)
Q Consensus 90 -----------~--~~~~~-~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 142 (224)
. ...+. .....+.+|||||...+ ......+++.+|++|+|+|.++.+.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~- 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD- 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH-
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH-
Confidence 0 00011 12356899999997765 56667789999999999998765443321
Q ss_pred HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 143 MELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 143 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+ ..+.......+.|+++|+||+|+.+.. ...+..+... ...+.+|+++|++++.++++.
T Consensus 192 -~-~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 192 -A-IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRS------FKLKYPWVGVVNRSQADINKN 251 (360)
T ss_dssp -H-HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSS------SCCSSCCEEECCCCHHHHHTT
T ss_pred -H-HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCcc------ccccCCeEEEEECChHHhccC
Confidence 1 222222222578999999999997642 2222222111 111228999999999888544
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=121.31 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=81.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchhHH-------HHHHhh--c
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQENVR-------RFWNTY--F 120 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~--~ 120 (224)
..++|+++|.+|+|||||+++|++..+....... .|.......+..++..+.+|||||+.++. .....+ .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 4689999999999999999999988754322222 23334445566788999999999986542 122222 3
Q ss_pred cCCCEEEEEEECCCCCCHHHH-HHHHHHHHhcCC-CCCCcEEEEEeCCCCCCC
Q psy12173 121 EDTDLLVFVVDSADPSKLPVA-AMELKNLLGDQR-LSTVPILVIANKQDVPGA 171 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 171 (224)
+.+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+...
T Consensus 118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 479999999999764 34443 344444433211 012699999999999653
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-15 Score=135.35 Aligned_cols=117 Identities=19% Similarity=0.048 Sum_probs=86.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------C------CCCCCCceeEEEEEeCC-------eEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN--TSLS----------H------NLKPTEGFNITILQKGE-------YTLNIF 104 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~--~~~~----------~------~~~~t~~~~~~~~~~~~-------~~~~l~ 104 (224)
.+.++|+++|+.++|||||+++|+... +... + ....|+......+.+++ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 356899999999999999999997531 1110 0 11234444445566655 899999
Q ss_pred EcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 105 ELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 105 D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
||||+.+|.......++.+|++|+|+|+++....... ..|..... .++|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 9999999988888889999999999999987554433 33433332 37899999999998764
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=137.36 Aligned_cols=117 Identities=21% Similarity=0.140 Sum_probs=87.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc--CCCCC---------C-C------CCCCCCceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS--GNTSL---------S-H------NLKPTEGFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~--~~~~~---------~-~------~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
.+..+|+++|++|+|||||+++|+. +.+.. . + ....|+......+.+++..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 3568999999999999999999984 22110 0 0 122344555666778889999999999999
Q ss_pred HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+......+++.+|++|+|+|++++.+..... .|..+.. .++|+++++||+|+...
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEEEECCCcccc
Confidence 8887888889999999999999987765543 3444433 37899999999999765
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-17 Score=136.97 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEE---------------------eC---CeEEEEEEcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ---------------------KG---EYTLNIFELGG 108 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~---------------------~~---~~~~~l~D~~G 108 (224)
++|+++|.+|+|||||+|++++......+....|...+..... ++ ..++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 4899999999999999999998873332222234443333221 12 36899999999
Q ss_pred chhH----HHHHH---hhccCCCEEEEEEECCCC
Q psy12173 109 QENV----RRFWN---TYFEDTDLLVFVVDSADP 135 (224)
Q Consensus 109 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~~ 135 (224)
.... +.+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8642 22222 346899999999999886
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=133.27 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=88.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC----------------------CCCCCCCCCCceeEEEEEeCCeEEEEEEcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT----------------------SLSHNLKPTEGFNITILQKGEYTLNIFELG 107 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~----------------------~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~ 107 (224)
.+.++|+++|+.++|||||..+|+...- ..+.....|+......+.+++..++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 3568999999999999999999973110 111122345556677888999999999999
Q ss_pred CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 108 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
|+.+|..-....++-+|++|+|+|+..+-... ....|..... .++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~q-T~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQ-TRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHH-HHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccc-cHHHHHHHHH----hCCceEEEEecccchhc
Confidence 99999988888899999999999999984433 3444555544 38999999999998765
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=125.41 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=91.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCCCC----------------------Ccee--------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH----NLKPT----------------------EGFN-------------- 90 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~----~~~~t----------------------~~~~-------------- 90 (224)
..++|+++|.+++|||||+++|.+..+.+.. ...|+ +.+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998864211 11121 0000
Q ss_pred -----------EEEEEe-CCeEEEEEEcCCch-------------hHHHHHHhhccCCCE-EEEEEECCCCCCHHHHHHH
Q psy12173 91 -----------ITILQK-GEYTLNIFELGGQE-------------NVRRFWNTYFEDTDL-LVFVVDSADPSKLPVAAME 144 (224)
Q Consensus 91 -----------~~~~~~-~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~ 144 (224)
...+.. ...++.+|||||.. .+......++..++. +++|.|.+..-.-.....+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 001111 24679999999952 345566666666654 5555666543221222223
Q ss_pred HHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 145 LKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 145 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
+..+ ...+.|+++|+||+|+.+... ..+..+ ......+....+++++||++|.|++ .+...+.+
T Consensus 190 ~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~---~~~~~l~~~~~~v~~~SA~~~~~i~-~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV----DPQGQRTIGVITKLDLMDEGTDARDVLE---NKLLPLRRGYIGVVNRSQKDIDGKK-DITAALAA 254 (353)
T ss_dssp HHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHT---TCSSCCTTCEEECCCCCHHHHHTTC-CHHHHHHH
T ss_pred HHHh----CcCCCceEEEeccccccCcchhHHHHHh---CCcccccCCceEEEeCCcccccccc-cHHHHHHH
Confidence 3333 225789999999999976422 122221 1111111111378999999999994 44444443
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=130.65 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=82.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCceeEEEE----------------------------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSL-SHNLKPTEGFNITIL---------------------------------- 94 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~-~~~~~~t~~~~~~~~---------------------------------- 94 (224)
...++|+++|.+|+|||||+|+|++..+.. .....+++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 457899999999999999999999988641 002222221111000
Q ss_pred ----EeCC---eEEEEEEcCCchh-----------HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCC
Q psy12173 95 ----QKGE---YTLNIFELGGQEN-----------VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLST 156 (224)
Q Consensus 95 ----~~~~---~~~~l~D~~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 156 (224)
.... ..+.+|||||... +......++..+|++++|+|+++.........++..+.. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC
Confidence 0000 3689999999865 556666778899999999999986666665555555432 36
Q ss_pred CcEEEEEeCCCCCCC
Q psy12173 157 VPILVIANKQDVPGA 171 (224)
Q Consensus 157 ~piilv~nK~Dl~~~ 171 (224)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 899999999999764
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-15 Score=124.86 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=71.0
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH-
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE- 175 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~- 175 (224)
.+..+.++||||...... .....+|++++|+|....+....+. ......|.++|+||+|+......+
T Consensus 170 ~~~~~iiiDTpGi~~~~~---~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQSEV---AVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSHHH---HHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcHHH---HHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 467899999999543222 2358899999999988765543221 111346899999999986542222
Q ss_pred ---HHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 176 ---EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 176 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
++.+.+.........|.++++++||++|.|+ +++...+.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi-~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGL-AELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCH-HHHHHHHHHHHHH
Confidence 2222221111111234458999999999999 6677777766543
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=118.39 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchhHHHH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQENVRRF 115 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~~~~ 115 (224)
++|+++|.+|+|||||++++++..+...+....|.+.+...+.+.+ ..+.+|||||+.++...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 5899999999999999999999775443333446665555555543 57999999998875421
Q ss_pred -------HHhhccCCCEEEEEEECCC
Q psy12173 116 -------WNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 116 -------~~~~~~~~d~ii~v~d~~~ 134 (224)
...+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2234789999999999987
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.8e-16 Score=125.69 Aligned_cols=131 Identities=15% Similarity=0.054 Sum_probs=96.6
Q ss_pred HHHHHHhcCCCC-CCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC-CHHHHHH
Q psy12173 67 TLIKQISSGNTS-LSHNLKPTEGFNITILQK-GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS-KLPVAAM 143 (224)
Q Consensus 67 sl~~~l~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~ 143 (224)
+|+.++..+.|. . .+.||++..+. ... .+..+.+||+ +++++.++..+++++|++|+|+|+++++ ++..+..
T Consensus 32 sl~~~~~~~~f~~~--~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQ--NLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTT--TCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEccccccc--CCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 688888888887 6 67889985443 332 2237899999 8899888889999999999999999997 6777888
Q ss_pred HHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 144 ELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 144 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
|+..+.. .++|+++|+||+|+.+....++..+..+.. ... + ++++|||++|.|+++.|.
T Consensus 107 ~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~--~~~-~--~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 107 FLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY--SGL-Y--PIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp HHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH--TTT-S--CEEECCTTTCTTHHHHHH
T ss_pred HHHHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH--hhh-C--cEEEEECCCCcCHHHHHH
Confidence 8776543 379999999999997642212222222111 111 3 899999999999955543
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=132.49 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=85.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC------------CCC----CCCCCCCCceeEEEEEeC----------------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN------------TSL----SHNLKPTEGFNITILQKG---------------- 97 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~------------~~~----~~~~~~t~~~~~~~~~~~---------------- 97 (224)
...++|+++|+.++|||||+++|+... +.. +.....|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 356899999999999999999998641 100 001123444444444443
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
+..+.+|||||+.+|...+..+++.+|++|+|+|++++.+......|. .... .++|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcc
Confidence 688999999999999988888899999999999999998877654443 3333 378999999999986
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-15 Score=121.09 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=72.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC-CCCCCC------CCCCCCceeEEE--EEe--CCeEEEEEEcCCc-------hh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG-NTSLSH------NLKPTEGFNITI--LQK--GEYTLNIFELGGQ-------EN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~-~~~~~~------~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~-------~~ 111 (224)
...++|+++|++|+|||||+++|.+. .++... ...++....... ++. ....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35689999999999999999998875 443311 001222221111 121 2368999999997 43
Q ss_pred HHHHHH-------hhcc-------------CCCEEEEEEECCCCCCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 112 VRRFWN-------TYFE-------------DTDLLVFVVDSADPSKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 112 ~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+..... .+++ .+++++++.+.+. .+++... +.+..+ . ...|+++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l---~--~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI---H--NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH---T--TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH---H--hcCCEEEEEEeCCCCC
Confidence 332221 2221 2344555555432 1344433 222222 1 3679999999999975
Q ss_pred CCCH----HHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 171 ALSA----EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 171 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.... +++.+.++ .++++|+++||++| |+++.|...+....
T Consensus 170 ~~e~~~~~~~~~~~~~-------~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 170 LKERERLKKRILDEIE-------EHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHHH-------HTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 3111 12222221 11238999999999 99877776655543
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-13 Score=122.15 Aligned_cols=157 Identities=12% Similarity=0.062 Sum_probs=96.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-----------------------------------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF----------------------------------------- 89 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~----------------------------------------- 89 (224)
..++|+++|.+++|||||+|+|++..+.+... .+++..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~-g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSS-SCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCC-ccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 46799999999999999999999987632111 111110
Q ss_pred -----------eEEEEEe-CCeEEEEEEcCCchh-------------HHHHHHhhc-cCCCEEEEEEECCCCCCHHHHHH
Q psy12173 90 -----------NITILQK-GEYTLNIFELGGQEN-------------VRRFWNTYF-EDTDLLVFVVDSADPSKLPVAAM 143 (224)
Q Consensus 90 -----------~~~~~~~-~~~~~~l~D~~G~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~ 143 (224)
....+.. ...++.++||||... .......++ ..+|++++|+|++.+........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0111111 234688999999432 233333333 68899999999998644333323
Q ss_pred HHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 144 ELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 144 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
.+..+. . .+.|+++|+||+|+..... ..++.. - .....+....+++++||++|.|+ +.+.+.+.+
T Consensus 209 ll~~L~-~---~g~pvIlVlNKiDlv~~~~~~~~il~-~--~~~~l~lg~~~VV~iSA~~G~Gv-deL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVD-P---QGQRTIGVITKLDLMDEGTDARDVLE-N--KLLPLRRGYIGVVNRSQKDIDGK-KDITAALAA 274 (772)
T ss_dssp HHHHHC-T---TCSSEEEEEECTTSSCTTCCSHHHHT-T--CSSCCSSCEEECCCCCCEESSSS-EEHHHHHHH
T ss_pred HHHHHH-h---cCCCEEEEEeCcccCCcchhhHHHHH-H--HhhhhhccCCceEEecccccccc-hhHHHHHHH
Confidence 333332 2 4789999999999976522 222222 1 11111111237899999999999 666667665
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-14 Score=116.78 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=58.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---------------------CCeEEEEEEcCCchh
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---------------------GEYTLNIFELGGQEN 111 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~l~D~~G~~~ 111 (224)
++|+++|.+|+|||||++++++......+....|...+.....+ ....+.+|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 58999999999999999999986532222223344544444433 235799999999765
Q ss_pred H-------HHHHHhhccCCCEEEEEEECCC
Q psy12173 112 V-------RRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 112 ~-------~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
. .......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2233345789999999999986
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-14 Score=129.52 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=86.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC--CCC------CC---C-------CCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN--TSL------SH---N-------LKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~--~~~------~~---~-------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
.++|+++|+.++|||||..+|+... ... .+ + ...|+......+.+++..++++|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 4689999999999999999997311 110 00 0 0123334455677889999999999999999
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
......++-+|++|+|+|+..+-..+ ....|...... ++|.++++||+|....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~----~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM----GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH----TCSCEECCEECCSSSC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc----CCCeEEEEeccccccC
Confidence 98888899999999999999873332 34555555554 7899999999998765
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-14 Score=107.89 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=76.6
Q ss_pred EcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHH---HHHHhcCC-CCCCcEEEEEeCC-CCCCCCCHHHHHh
Q psy12173 105 ELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMEL---KNLLGDQR-LSTVPILVIANKQ-DVPGALSAEEVGV 179 (224)
Q Consensus 105 D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~piilv~nK~-Dl~~~~~~~~~~~ 179 (224)
|.+|+..++..|..|++++|++|||+|++|.+.++ ..+.+ ..++.... ..+.|++|++||. |++......++.+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 34488999999999999999999999999987765 55555 33344332 3689999999985 8988899999999
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.+++... .+.| .+..|||++|+|+.+-
T Consensus 187 ~L~L~~l-~R~W--~Iq~csA~TGeGL~EG 213 (227)
T 3l82_B 187 ELHLNLL-NHPW--LVQDTEAETLTGFLNG 213 (227)
T ss_dssp HTTGGGG-CSCE--EEEEEETTTCTTHHHH
T ss_pred HcCCcCC-CCCE--EEEEeECCCCcCHHHH
Confidence 9999877 4788 9999999999999443
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-13 Score=112.34 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=88.0
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhH-------HHHHHhhcc
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENV-------RRFWNTYFE 121 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~ 121 (224)
.....+|+++|.||+|||||+|+|++.+....+....|.+.....+.+.+.++.++||||.... ........+
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 3456799999999999999999999987655566677888999999999999999999995421 122334578
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhc-CCCCCCcEEEEEeCCCCC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGD-QRLSTVPILVIANKQDVP 169 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~ 169 (224)
.+|++++|+|++++ .........++... .....+|.+++.||.|..
T Consensus 149 ~ad~il~vvD~~~p--~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 TCNLLFIILDVNKP--LHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HCSEEEEEEETTSH--HHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hcCccccccccCcc--HHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 89999999999986 33332222222221 112467889999999963
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-14 Score=116.25 Aligned_cols=110 Identities=18% Similarity=0.104 Sum_probs=61.9
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--- 173 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--- 173 (224)
.+..+.++||+|..... ....+.+|.+++|+|+++++....... .+ ...|.++|+||+|+.+...
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 45788999999964222 223578999999999987643221111 11 2457899999999864311
Q ss_pred -HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 174 -AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 174 -~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
..++...+.........+..+++++||++|.|+ +++...+.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi-~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGI-SEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCH-HHHHHHHHHHHH
Confidence 112222222111000122348899999999999 666767766543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-14 Score=119.33 Aligned_cols=110 Identities=14% Similarity=0.033 Sum_probs=65.1
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHH-
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAE- 175 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~- 175 (224)
.+.++.++||||....... ....+|++++|+|.+.++.+..... .. .+.|.++|+||+|+.+.....
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 4678999999997654432 3589999999999976543211110 00 146789999999997542222
Q ss_pred ---HHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 176 ---EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 176 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++.+.++........|..+++++||++|.|+ +.+.+.+.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi-~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGI-DEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCH-HHHHHHHHHHHH
Confidence 2222211111001122348999999999999 666666666543
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=110.05 Aligned_cols=120 Identities=13% Similarity=0.003 Sum_probs=70.3
Q ss_pred eEEEEEEcCCchhHHHHH------HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFW------NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
..+.+|||||+.+..... ...+.. +++++++|........................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 479999999988764331 124566 8999999987654444333222111110001368999999999987643
Q ss_pred CHHHHHhhc-Cccc----------------------ccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 173 SAEEVGVAL-DLSS----------------------ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 173 ~~~~~~~~~-~~~~----------------------~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
..+++.+.+ +... .......++++++||++|.|+ +++...+.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi-~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF-EDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTH-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccH-HHHHHHHHHHhcc
Confidence 222222221 0000 000011137999999999999 6677777776653
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=117.73 Aligned_cols=117 Identities=18% Similarity=0.068 Sum_probs=83.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC--------CCC----------CCCCCCCCceeEEEEEeC-------CeEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN--------TSL----------SHNLKPTEGFNITILQKG-------EYTLNIF 104 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~--------~~~----------~~~~~~t~~~~~~~~~~~-------~~~~~l~ 104 (224)
.+.++|+++|+.++|||||..+|+... ... +.....|+......+.++ ++.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 457899999999999999999997321 000 011122333344445553 5899999
Q ss_pred EcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 105 ELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 105 D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
|||||.+|..-....++-+|++|+|+|+..+-.. +....|...... ++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~~----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANKY----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHH----TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHHc----CCCeEEEEccccccCc
Confidence 9999999999888889999999999999988433 334455555554 7999999999998654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=116.16 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=72.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------CCCCCceeEEEEEe--CC--eEEEEEEcCCchhHH------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHN------LKPTEGFNITILQK--GE--YTLNIFELGGQENVR------ 113 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~------~~~t~~~~~~~~~~--~~--~~~~l~D~~G~~~~~------ 113 (224)
.-.++|+++|++|+|||||+++|.+..++..+. ..++.......+.. .+ ..+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 456789999999999999999999987632111 01222211111111 22 478999999976531
Q ss_pred -HH-------H-----------HhhccCCCEEEEEEECCCC-CCHHHHH-HHHHHHHhcCCCCCCcEEEEEeCCCCCCCC
Q psy12173 114 -RF-------W-----------NTYFEDTDLLVFVVDSADP-SKLPVAA-MELKNLLGDQRLSTVPILVIANKQDVPGAL 172 (224)
Q Consensus 114 -~~-------~-----------~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 172 (224)
.. . ..++.++++.+++++.... .++.... .++..+ . .+.|+|+|+||+|+....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHH
Confidence 11 0 1123445543444444332 3455554 344444 2 378999999999986542
Q ss_pred CHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 173 SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
......+.... .. ...+++++++||+++.++++.
T Consensus 184 ev~~~k~~i~~-~~--~~~~i~~~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 184 ECQQFKKQIMK-EI--QEHKIKIYEFPETDDEEENKL 217 (418)
T ss_dssp HHHHHHHHHHH-HH--HHHTCCCCCCC----------
T ss_pred HHHHHHHHHHH-HH--HHcCCeEEeCCCCCCcCHHHH
Confidence 22111111110 00 112348999999999998553
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-14 Score=110.04 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=89.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC------CCCCCCC--------ceeEEEE------------------EeCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS------HNLKPTE--------GFNITIL------------------QKGE 98 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~------~~~~~t~--------~~~~~~~------------------~~~~ 98 (224)
...+|+++|.+|+|||||+++|........ .+...+. +.....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 356999999999999999999986521110 0110000 1111111 1234
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHH
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEE 176 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~ 176 (224)
..+.+|||+|+.... ..+....+.+++|+|+.+.... ...+. .. .+.|.++++||+|+.+. ...++
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHHHH
Confidence 678899999951110 1111357889999999886431 11111 11 25788999999998643 34455
Q ss_pred HHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 177 VGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
..+.+... ...++++++||++|.|+ +++.+.+.+.+.
T Consensus 177 ~~~~~~~~-----~~~~~i~~~Sa~~g~gi-~~l~~~l~~~~~ 213 (221)
T 2wsm_A 177 MKADAKLI-----NPRAKIIEMDLKTGKGF-EEWIDFLRGILN 213 (221)
T ss_dssp HHHHHHHH-----CTTSEEEECBTTTTBTH-HHHHHHHHHHHC
T ss_pred HHHHHHHh-----CCCCeEEEeecCCCCCH-HHHHHHHHHHHH
Confidence 54444211 11238999999999999 555556665554
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-13 Score=107.47 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=80.7
Q ss_pred EcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHH---HHHhcCC-CCCCcEEEEEeC-CCCCCCCCHHHHHh
Q psy12173 105 ELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELK---NLLGDQR-LSTVPILVIANK-QDVPGALSAEEVGV 179 (224)
Q Consensus 105 D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~piilv~nK-~Dl~~~~~~~~~~~ 179 (224)
|.+||+.++..|..+++++|++|||+|++|.++++ ..+.+. .++.... ..+.|++|++|| .|+.......++.+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e 271 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 271 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHH
Confidence 35688999999999999999999999999998876 444333 3333221 368999999996 59999999999999
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
.+++.... +.| .+..|||.+|+|+.+-+
T Consensus 272 ~L~L~~l~-r~W--~Iq~csA~tGeGL~EGl 299 (312)
T 3l2o_B 272 ELHLNLLN-HPW--LVQDTEAETLTGFLNGI 299 (312)
T ss_dssp HTTGGGGC-SCE--EEEEEETTTCTTHHHHH
T ss_pred HcCCccCC-CcE--EEEecccCCCcCHHHHH
Confidence 99998774 788 99999999999995443
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.7e-12 Score=103.22 Aligned_cols=110 Identities=13% Similarity=0.066 Sum_probs=63.1
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--- 173 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--- 173 (224)
.+.++.++||+|...-... ....+|.+++|+|...++........+ ...+.++++||+|+.....
T Consensus 146 ~~~~~iliDT~Gi~~~~~~---v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCCEEEEECCCCCcchhh---HHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEEEchhccCchhHHH
Confidence 5688999999996543221 246899999999986543221111000 1235577889999754311
Q ss_pred --HHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 174 --AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 174 --~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
.+++...+.........|..+++.+||+++.|+ +++.+.+.+.+.
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi-~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGL-DSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCH-HHHHHHHHHHHH
Confidence 122222221111000112337899999999999 777777776654
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-12 Score=99.31 Aligned_cols=149 Identities=13% Similarity=0.076 Sum_probs=79.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee----------------EEEEEeC-----------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN----------------ITILQKG----------------- 97 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~----------------~~~~~~~----------------- 97 (224)
..++|+++|++|+|||||++++....+.. ...++++.. ...+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 46799999999999999999999765443 222222211 1111100
Q ss_pred ---CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--C
Q psy12173 98 ---EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--L 172 (224)
Q Consensus 98 ---~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~ 172 (224)
+..+.++|++|..... ..+-...+..+.++|......... .. ... ...|.++|+||+|+.+. .
T Consensus 115 ~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~------~~~~~iiv~NK~Dl~~~~~~ 182 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KH-PGI------MKTADLIVINKIDLADAVGA 182 (226)
T ss_dssp CGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH------HTTCSEEEEECGGGHHHHTC
T ss_pred hcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hh-hhH------hhcCCEEEEeccccCchhHH
Confidence 0134455555421100 011122344556666433211110 00 011 14678999999998643 3
Q ss_pred CHHHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 173 SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
..++..+.+... ...++++++||++|.|+ +++...+.+.+.
T Consensus 183 ~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv-~~l~~~l~~~~~ 223 (226)
T 2hf9_A 183 DIKKMENDAKRI-----NPDAEVVLLSLKTMEGF-DKVLEFIEKSVK 223 (226)
T ss_dssp CHHHHHHHHHHH-----CTTSEEEECCTTTCTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCCCeEEEEEecCCCCH-HHHHHHHHHHHH
Confidence 444444443210 11238999999999999 555555555544
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.8e-12 Score=104.31 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=53.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchhH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQENV 112 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~ 112 (224)
....+|+++|.+|+|||||+++|++..+...+....|.+++...+.+.+ ..+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 4568999999999999999999999876443444556677777666543 35999999998865
Q ss_pred HH-------HHHhhccCCCEEEEEEECCCCCC
Q psy12173 113 RR-------FWNTYFEDTDLLVFVVDSADPSK 137 (224)
Q Consensus 113 ~~-------~~~~~~~~~d~ii~v~d~~~~~s 137 (224)
.. .+..+++.+|++++|+|+++.++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 54 34556899999999999986533
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-10 Score=92.37 Aligned_cols=90 Identities=12% Similarity=-0.008 Sum_probs=64.9
Q ss_pred chhHHHHHHhhccCCCEEEEEEECCCCC-CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC---HHHHHhhcCcc
Q psy12173 109 QENVRRFWNTYFEDTDLLVFVVDSADPS-KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS---AEEVGVALDLS 184 (224)
Q Consensus 109 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~ 184 (224)
++++..+...++.++|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.++.. .++..+.++.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence 5556655566899999999999999986 78877888876543 4799999999999975421 1222222211
Q ss_pred cccCcccceeEEEeecCCCCccccc
Q psy12173 185 SISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 185 ~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.. .+++++||++|.|+++.
T Consensus 141 ----~g--~~~~~~SA~~g~gi~~L 159 (302)
T 2yv5_A 141 ----AG--YDVLKVSAKTGEGIDEL 159 (302)
T ss_dssp ----TT--CEEEECCTTTCTTHHHH
T ss_pred ----CC--CeEEEEECCCCCCHHHH
Confidence 12 28999999999999443
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-09 Score=88.41 Aligned_cols=85 Identities=20% Similarity=0.204 Sum_probs=63.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNT-SLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQEN 111 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~ 111 (224)
....+++++|++|+|||||+|+|++... ...+....|..++...+.+.+ ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4567999999999999999999999775 443344446667777776654 4689999999432
Q ss_pred -------HHHHHHhhccCCCEEEEEEECCC
Q psy12173 112 -------VRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 112 -------~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
+...+...++.+|++++|+|..+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33334445789999999999875
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-08 Score=84.78 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=85.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh------cCCCCCC--CCCCCCC-----------ceeEEEE-----------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQIS------SGNTSLS--HNLKPTE-----------GFNITIL----------------- 94 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~------~~~~~~~--~~~~~t~-----------~~~~~~~----------------- 94 (224)
....|+++|.+|+||||++++|. +.+.... +.+.+.. +......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999 4331110 0011100 0111110
Q ss_pred EeCCeEEEEEEcCCchhH----HHHHHhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcE-EEEEeCCC
Q psy12173 95 QKGEYTLNIFELGGQENV----RRFWNTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPI-LVIANKQD 167 (224)
Q Consensus 95 ~~~~~~~~l~D~~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 167 (224)
...+.++.++||||.... ....... ...+|.+++|+|+......... ...+.. ..|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~-----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD-----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH-----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh-----hcCceEEEEeCCc
Confidence 115678999999996532 1111111 2378999999999886442222 222211 2564 89999999
Q ss_pred CCCCCCH-HHHHhhcCccc--------ccCcccceeEEEeecCCCCc-cccchHHHHHHH
Q psy12173 168 VPGALSA-EEVGVALDLSS--------ISSRQHRIKLIATQAPSNLH-HLHVSVVEAEQA 217 (224)
Q Consensus 168 l~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~Sa~~~~g-v~~~~~~~i~~~ 217 (224)
....... -++....+... ........+...+|++.|.| + +.+.+.+.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi-~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI-EGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTT-TTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcH-HHHHHHHHHH
Confidence 8754331 22332222110 00000011445689999999 7 6666665543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-08 Score=83.19 Aligned_cols=113 Identities=22% Similarity=0.273 Sum_probs=59.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--CCCCceeEEE--EEeCC--eEEEEEEcCCchhH--------------
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNL--KPTEGFNITI--LQKGE--YTLNIFELGGQENV-------------- 112 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~--~~t~~~~~~~--~~~~~--~~~~l~D~~G~~~~-------------- 112 (224)
++++++|++|+|||||++.|.+..+...... .+........ ++..+ ..+.++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 5699999999999999999998753321111 1111111111 11122 37899999984211
Q ss_pred HH----HHHhh---------ccCC--C-EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 113 RR----FWNTY---------FEDT--D-LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 113 ~~----~~~~~---------~~~~--d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.. ....+ ...+ | +++++.|...+ +......+...+. .++|+|+|.||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccch
Confidence 11 11111 1122 3 35566666654 3333322222222 47899999999998654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.8e-10 Score=93.06 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=65.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC------CCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH--------HHHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG------NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR--------RFWN 117 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~ 117 (224)
..+++++|.+|+|||||+|+|.+. ..........|... ..+... ..+.++||||..... ....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLE-SGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 468999999999999999999976 22221111222222 222222 238999999953211 1112
Q ss_pred hhc--cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 118 TYF--EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 118 ~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
..+ ...+.++++++....--+..+.. ...+. ..+.|+++++||.|..+.
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~--l~~l~---~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR--LDYIK---GGRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE--EEEEE---SSSEEEEEEECTTSCEEE
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE--EEEcc---CCCceEEEEecCCccccc
Confidence 222 67899999998843200110000 01111 146899999999998765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=78.48 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=65.6
Q ss_pred EEEcCCch-hHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhc
Q psy12173 103 IFELGGQE-NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVAL 181 (224)
Q Consensus 103 l~D~~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 181 (224)
+-..||+. .....+...+..+|++++|+|+.++.+..+ ..+..++ .++|.++|+||+|+.+....+.+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44678876 455566677999999999999999877642 1222332 378999999999997642222333333
Q ss_pred CcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 182 DLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 182 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
+ .... +++++||++|.|+ +.+...+.+.+.
T Consensus 76 ~-----~~g~--~~i~iSA~~~~gi-~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 E-----NQGI--RSLSINSVNGQGL-NQIVPASKEILQ 105 (282)
T ss_dssp H-----TTTC--CEEECCTTTCTTG-GGHHHHHHHHHH
T ss_pred H-----hcCC--cEEEEECCCcccH-HHHHHHHHHHHH
Confidence 1 1122 7899999999999 666666666554
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-07 Score=74.30 Aligned_cols=114 Identities=17% Similarity=0.235 Sum_probs=62.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------CCCCCCceeEEEEEeC--C--eEEEEEEcCCchh---------
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSH-------NLKPTEGFNITILQKG--E--YTLNIFELGGQEN--------- 111 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~-------~~~~t~~~~~~~~~~~--~--~~~~l~D~~G~~~--------- 111 (224)
.++++++|++|+|||||++.|.+...+... ....+.......+..+ . ..++++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999975433211 0111111111111111 1 3789999998311
Q ss_pred -HHH--------HHHh----------hccCCCEEEEEEECC-CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 112 -VRR--------FWNT----------YFEDTDLLVFVVDSA-DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 112 -~~~--------~~~~----------~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
... .... .+..+++.++++|.. .+ +......+...+.. ..++++|.||+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~g--L~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHS--LRPLDLEFMKHLSK----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSS--CCHHHHHHHHHHHT----TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCc--CCHHHHHHHHHHHh----cCcEEEEEeccccCCH
Confidence 111 1111 123468888998855 33 23333222222332 3899999999998754
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-08 Score=85.38 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=65.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC------C-CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH--------HHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT------S-LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR--------RFW 116 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~------~-~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~ 116 (224)
..+++++|.+|+|||||+|+|.+... . .......|... ..+...+ .+.++||||..... ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSS-SCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 46899999999999999999997531 1 10111112222 2222222 28999999953211 111
Q ss_pred Hhh--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHH
Q psy12173 117 NTY--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEE 176 (224)
Q Consensus 117 ~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 176 (224)
... ....+.++++++....--...+.. ...+.. .+.|+++++||.|..+....+.
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--~d~l~~---~~~~~~~v~nk~d~~~~~~~~~ 293 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR--FDYVSG---GRRAFTCHFSNRLTIHRTKLEK 293 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE--EEEEES---SSEEEEEEECTTSCEEEEEHHH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE--EEEecC---CCceEEEEecCccccccccHHH
Confidence 111 367788999998742200111000 011111 4689999999999877644433
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=73.87 Aligned_cols=157 Identities=11% Similarity=0.148 Sum_probs=83.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC----CCCceeEEEEEeCC-eEEEEEEcCCchh----HHHHH-HhhccC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLK----PTEGFNITILQKGE-YTLNIFELGGQEN----VRRFW-NTYFED 122 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~----~t~~~~~~~~~~~~-~~~~l~D~~G~~~----~~~~~-~~~~~~ 122 (224)
..++++|++|+|||||+|.+.+...+...... ++.. ....++... ..+.++|++|... ..... ...+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~-~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce-eEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 48999999999999999999985433211110 0100 011112222 2589999998432 22222 122344
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC---------CCCCHHHHHhhcCcccc---cCc-
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP---------GALSAEEVGVALDLSSI---SSR- 189 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---------~~~~~~~~~~~~~~~~~---~~~- 189 (224)
.+..++ ++...+ ...+..+...+.. .++|+++|.||.|+. +....+++.+.+..... ...
T Consensus 149 ~~~~~~-lS~G~~---~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 149 YDFFII-ISATRF---KKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp CSEEEE-EESSCC---CHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEE-eCCCCc---cHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566655 666542 2222223333333 368999999999863 22334444333321110 001
Q ss_pred ccceeEEEeec--CCCCccccchHHHHHHHH
Q psy12173 190 QHRIKLIATQA--PSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 190 ~~~~~~~~~Sa--~~~~gv~~~~~~~i~~~l 218 (224)
.....++.+|+ ..+.|+ +.+.+.+.+.+
T Consensus 222 ~~~~~iiliSsh~l~~~~~-e~L~d~I~~~L 251 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDF-PVLMDKLISDL 251 (413)
T ss_dssp CSSCCEEECCTTCTTSTTH-HHHHHHHHHHS
T ss_pred CCCCcEEEEecCcCCccCH-HHHHHHHHHhC
Confidence 01126788999 566667 66666666554
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-07 Score=79.22 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=64.5
Q ss_pred CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC-CHHHHHhhcCccc-
Q psy12173 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL-SAEEVGVALDLSS- 185 (224)
Q Consensus 108 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~- 185 (224)
..++|++.+..+.+.++++++|+|+++++ ..|...+.... .++|+++|+||+|+.+.. ..++..+.+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 46889999988899999999999999852 22322232221 378999999999997542 2333333221100
Q ss_pred -ccCcccceeEEEeecCCCCccccchHHHHHHH
Q psy12173 186 -ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 186 -~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~ 217 (224)
...+.. +++++||++|.|+ +++...+.+.
T Consensus 128 ~~g~~~~--~v~~iSA~~g~gi-~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPE--DVFLISAAKGQGI-AELADAIEYY 157 (368)
T ss_dssp HTTCCCS--EEEECCTTTCTTH-HHHHHHHHHH
T ss_pred HcCCCcc--cEEEEeCCCCcCH-HHHHhhhhhh
Confidence 000111 6899999999999 5555565543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-07 Score=77.24 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=65.0
Q ss_pred CchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCc--c
Q psy12173 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDL--S 184 (224)
Q Consensus 108 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~--~ 184 (224)
.++.|++.+..+++.++++++|+|++++++ .....+...+ .++|+++|+||+|+.+. ...++..+.+.. .
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 478899999888899999999999999753 1111122221 37899999999999765 223333333211 0
Q ss_pred cccCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 185 SISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 185 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
....+.. +++.+||++|.|+ +++...+.+.+
T Consensus 130 ~~g~~~~--~v~~iSA~~g~gi-~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPV--DVCLVSAAKGIGM-AKVMEAINRYR 160 (369)
T ss_dssp TTTCCCS--EEEECBTTTTBTH-HHHHHHHHHHH
T ss_pred HcCCCcc--cEEEEECCCCCCH-HHHHHHHHhhc
Confidence 0000112 6899999999999 66666665543
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.31 E-value=5.2e-07 Score=72.41 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=35.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
..++++++|.+|+|||||+|++.+......... ..|.... .+.. +..+.++||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcC
Confidence 457999999999999999999998763322111 1222222 1222 3468999999953
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.30 E-value=2.7e-06 Score=75.40 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
..++++|+.|||||||++.+.+...+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 45999999999999999999987544
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-06 Score=73.65 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=64.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc------CCCCC--CCCCCC-----------CCceeEEEE-----------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS------GNTSL--SHNLKP-----------TEGFNITIL----------------- 94 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~------~~~~~--~~~~~~-----------t~~~~~~~~----------------- 94 (224)
....|+++|.+|+||||++..|.. .+... .+.+.+ ..+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 356899999999999999988873 22100 001101 011111110
Q ss_pred EeCCeEEEEEEcCCchh----HHH-HH-HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 95 QKGEYTLNIFELGGQEN----VRR-FW-NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 95 ~~~~~~~~l~D~~G~~~----~~~-~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
...+..+.++||+|... ... .. ......+|.+++|+|+....... .....+... -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh----CCCeEEEEECCCC
Confidence 01247899999999432 111 11 11234689999999998753322 223333222 2456799999998
Q ss_pred CCC
Q psy12173 169 PGA 171 (224)
Q Consensus 169 ~~~ 171 (224)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 654
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=9.2e-07 Score=70.22 Aligned_cols=55 Identities=27% Similarity=0.419 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCch
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQE 110 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~ 110 (224)
.+++++|.+|+|||||+|++.+.......... .|.... .+.. +..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCcc
Confidence 69999999999999999999987753311111 122211 1222 3468999999955
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.8e-06 Score=73.77 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=40.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCC-CCCCceeEEEEE---eCCeEEEEEEcCCch
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTS--LSHNL-KPTEGFNITILQ---KGEYTLNIFELGGQE 110 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~--~~~~~-~~t~~~~~~~~~---~~~~~~~l~D~~G~~ 110 (224)
.+..+|+++|.+|+|||||+|+|.+.... ..+.. ..|.+....... ..+..+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 35678999999999999999999987632 11111 223333222111 246789999999954
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=68.58 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=64.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC------CCC--CCCCCC-----------------------CCCce-eE--EEE-Ee
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG------NTS--LSHNLK-----------------------PTEGF-NI--TIL-QK 96 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~------~~~--~~~~~~-----------------------~t~~~-~~--~~~-~~ 96 (224)
...|+++|.+|+||||++..|... +.. ..+.+. .+.+. .. ..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998862 110 000000 00000 00 000 01
Q ss_pred CCeEEEEEEcCCchhHHH----HHH--hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCC-c-EEEEEeCCCC
Q psy12173 97 GEYTLNIFELGGQENVRR----FWN--TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTV-P-ILVIANKQDV 168 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~----~~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-iilv~nK~Dl 168 (224)
.+..+.++||||...... ... .....+|.+++|+|+..+. + .......+ . ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 457899999999654221 111 1123689999999987653 2 22222222 1 134 5 8899999998
Q ss_pred CCC
Q psy12173 169 PGA 171 (224)
Q Consensus 169 ~~~ 171 (224)
...
T Consensus 251 ~~~ 253 (432)
T 2v3c_C 251 SAK 253 (432)
T ss_dssp CST
T ss_pred ccc
Confidence 643
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-05 Score=67.03 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=63.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc------CCCCC--CCCCCC-----------CCceeEEE-----------------EE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS------GNTSL--SHNLKP-----------TEGFNITI-----------------LQ 95 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~------~~~~~--~~~~~~-----------t~~~~~~~-----------------~~ 95 (224)
...|+++|++|+||||++..|.. .+... .+.+.+ ..+..... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 56788999999999999998872 22100 000000 01111110 00
Q ss_pred eCCeEEEEEEcCCchh------HHHHHHh--hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 96 KGEYTLNIFELGGQEN------VRRFWNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~------~~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
..+..+.++||||... ....... ..-.++.+++|+|+.......+....+... -.+..+++||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 1257789999999533 1111111 122579999999998764433333333322 245689999999
Q ss_pred CCCC
Q psy12173 168 VPGA 171 (224)
Q Consensus 168 l~~~ 171 (224)
....
T Consensus 250 ~~a~ 253 (433)
T 3kl4_A 250 GTAK 253 (433)
T ss_dssp GCSC
T ss_pred cccc
Confidence 8643
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.88 E-value=1e-05 Score=65.60 Aligned_cols=81 Identities=11% Similarity=0.041 Sum_probs=54.1
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC----HHHHHhhcCcccccCcccce
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS----AEEVGVALDLSSISSRQHRI 193 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~ 193 (224)
....++|.+++|+|+.++..-.+....+...... .++|.++|+||+|+.++.. .+++.+.++. .+.
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~-----~g~-- 151 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-----IGY-- 151 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-----HTC--
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHh-----CCC--
Confidence 3588999999999999876544433322222222 4789999999999987632 2333333311 122
Q ss_pred eEEEeecCCCCcccc
Q psy12173 194 KLIATQAPSNLHHLH 208 (224)
Q Consensus 194 ~~~~~Sa~~~~gv~~ 208 (224)
+++.+||.+|.|+++
T Consensus 152 ~v~~~sa~~~~g~~~ 166 (307)
T 1t9h_A 152 DVYLTSSKDQDSLAD 166 (307)
T ss_dssp CEEECCHHHHTTCTT
T ss_pred eEEEEecCCCCCHHH
Confidence 789999999999854
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2e-06 Score=68.21 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=53.3
Q ss_pred cCCchh-HHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcc
Q psy12173 106 LGGQEN-VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLS 184 (224)
Q Consensus 106 ~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 184 (224)
.|||.. ........+..+|++++|+|+.++.+..+.. +. + . ++|.++|+||+|+.+....+++.+.++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 366553 2234455689999999999999986654311 11 1 1 7899999999999764222233332211
Q ss_pred cccCcccceeEEEeecCCCCccccchH
Q psy12173 185 SISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 185 ~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
... ++ .+||++|.|+ +.+.
T Consensus 74 ----~g~--~v-~iSa~~~~gi-~~L~ 92 (262)
T 3cnl_A 74 ----QGK--RV-ITTHKGEPRK-VLLK 92 (262)
T ss_dssp ----TTC--CE-EECCTTSCHH-HHHH
T ss_pred ----cCC--eE-EEECCCCcCH-HHHH
Confidence 122 67 9999999998 4433
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.83 E-value=5.2e-05 Score=61.16 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=63.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc------CCCCC--CCCCCCC-----------CceeEEE-----------------EE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS------GNTSL--SHNLKPT-----------EGFNITI-----------------LQ 95 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~------~~~~~--~~~~~~t-----------~~~~~~~-----------------~~ 95 (224)
...++++|.+|+||||++..+.. ++... .+.+.+. .+..... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 45788899999999999998873 22100 0000000 0111100 01
Q ss_pred eCCeEEEEEEcCCchh--HHH-HHH-----hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCC
Q psy12173 96 KGEYTLNIFELGGQEN--VRR-FWN-----TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQ 166 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 166 (224)
.++..+.++||||... ... ... .....+|.+++|+|.... .+.......+.. ..| ..++.||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1456899999999765 322 111 124478999999998754 222222333321 345 67899999
Q ss_pred CCCCC
Q psy12173 167 DVPGA 171 (224)
Q Consensus 167 Dl~~~ 171 (224)
|....
T Consensus 250 D~~~~ 254 (297)
T 1j8m_F 250 DGTAK 254 (297)
T ss_dssp GGCTT
T ss_pred CCCcc
Confidence 98643
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.41 E-value=2.5e-05 Score=66.98 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=54.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchh--HHHHH--------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQEN--VRRFW-------- 116 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~--~~~~~-------- 116 (224)
....|+++|.+||||||+.++|....... ..++..++...... ......+||..|.+. .+..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~---~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI---GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc---CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999998643211 11111111000000 113446789888733 33332
Q ss_pred HhhccCCCEEEEEEECCCCCCHHHHHHHHH
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPVAAMELK 146 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 146 (224)
..++...++.++|+|.++. +...-..++.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~ 143 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFN 143 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHH
Confidence 4456677888999999998 4444444433
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00034 Score=57.79 Aligned_cols=81 Identities=15% Similarity=0.061 Sum_probs=48.4
Q ss_pred hhccCCCEEEEEEECCCCCCHHH-HHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPV-AAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
....++|.+++|... +|..-.+ +.+++..... .++|.++|+||+|+.++...+...+.... +...+. +++
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~--y~~~G~--~v~ 196 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDI--YRNIGY--RVL 196 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHH--HHTTTC--CEE
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHH--HHhCCC--cEE
Confidence 346899999988654 5654333 3333322222 36888999999999765221112222211 111223 789
Q ss_pred EeecCCCCccc
Q psy12173 197 ATQAPSNLHHL 207 (224)
Q Consensus 197 ~~Sa~~~~gv~ 207 (224)
.+||.+|.|++
T Consensus 197 ~~Sa~~~~gl~ 207 (358)
T 2rcn_A 197 MVSSHTQDGLK 207 (358)
T ss_dssp ECBTTTTBTHH
T ss_pred EEecCCCcCHH
Confidence 99999999984
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0007 Score=57.40 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=62.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh-------cCCCCC--CCCCCCC-----------CceeEEE--------------E--
Q psy12173 51 FQRKILILGLDNSGKSTLIKQIS-------SGNTSL--SHNLKPT-----------EGFNITI--------------L-- 94 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~-------~~~~~~--~~~~~~t-----------~~~~~~~--------------~-- 94 (224)
....|+++|.+|+||||+...|. +.+... .+.+.+. .+..... +
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34678889999999999988887 322110 0000000 0001000 0
Q ss_pred -EeCCeEEEEEEcCCchhHH-HHH-----HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCC
Q psy12173 95 -QKGEYTLNIFELGGQENVR-RFW-----NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQ 166 (224)
Q Consensus 95 -~~~~~~~~l~D~~G~~~~~-~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~ 166 (224)
...+..+.++||||..... ... ......++.+++|+|+......-. ....+.. ..+ .-++.||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEecC
Confidence 1145789999999954321 111 112447899999999986543322 2222211 233 34689999
Q ss_pred CCCCC
Q psy12173 167 DVPGA 171 (224)
Q Consensus 167 Dl~~~ 171 (224)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 98644
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00022 Score=53.04 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998864
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00062 Score=57.86 Aligned_cols=26 Identities=19% Similarity=0.063 Sum_probs=22.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.+..-|.|+|++++|||+|+|+|.+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35567899999999999999999853
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00047 Score=51.12 Aligned_cols=24 Identities=13% Similarity=0.450 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..++++|++|||||||++.|....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999998643
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00055 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..++++|++|+|||||++.+.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999863
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00067 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-.++++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00063 Score=51.15 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-.++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 36899999999999999999875
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00069 Score=49.79 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~ 73 (224)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 67999999999999999754
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00039 Score=56.25 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4588999999999999999999765
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0011 Score=50.04 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=22.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
+....|+++|++|+|||||++.|....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345578999999999999999998653
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00078 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
--++++|++|||||||++.+.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998754
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0058 Score=45.69 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=47.0
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCC-CCCCcEEEEEeCCCCCC
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQR-LSTVPILVIANKQDVPG 170 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 170 (224)
...+.++|+|+.... .....+..+|.+++++..+... ......+..+..... ..+.++.+|.|+.|...
T Consensus 75 ~yD~viiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV--ITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSSSH--HHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCCCH--HHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 478999999986632 2233466799999999887764 556555555543321 23567799999999644
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=50.39 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|++|||||||++.+.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00094 Score=51.29 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.--++++|++|||||||++.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3478999999999999999998754
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0011 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...|+++|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999998764
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00096 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998754
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=50.31 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
....|+++|++|||||||++.+.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999988643
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=48.15 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++||||||+.+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=51.48 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34478999999999999999998754
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0014 Score=47.66 Aligned_cols=20 Identities=45% Similarity=0.675 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q psy12173 53 RKILILGLDNSGKSTLIKQI 72 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l 72 (224)
+.|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999999865
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=49.94 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-|+++|++||||||+++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998764
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=47.96 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|+++|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0015 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0017 Score=48.07 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0016 Score=49.86 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 467999999999999999998754
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.691 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++||||||+++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999875
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0017 Score=50.46 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999998764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=51.42 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999854
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999999854
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0018 Score=47.07 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=48.24 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0021 Score=47.65 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999865
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=51.17 Aligned_cols=26 Identities=42% Similarity=0.418 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999999764
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0019 Score=50.26 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q psy12173 53 RKILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~ 73 (224)
..|+++|++||||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999999
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0019 Score=49.86 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999999865
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4468999999999999999999855
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=50.31 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999999754
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=48.32 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
|+++||+|+|||||+++|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998643
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=47.31 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0019 Score=48.97 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0018 Score=48.78 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...|+++|++||||||+.+.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999997643
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.002 Score=50.44 Aligned_cols=26 Identities=42% Similarity=0.321 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999998864
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0018 Score=50.35 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999864
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3468999999999999999999754
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0017 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.++++|++|+|||||++.+.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999988643
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0021 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.002 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0022 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|+|||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999998754
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.002 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+|+++|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.004 Score=44.24 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4579999999999999999998654
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0021 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++++|++|+|||||++.+.+-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999985
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0022 Score=50.52 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34478999999999999999999754
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0016 Score=47.92 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0025 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0025 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
-.++++|++|+|||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4789999999999999999998664
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0017 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++|++|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999876
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0026 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|++.|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0023 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999999864
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=50.60 Aligned_cols=24 Identities=38% Similarity=0.373 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++++|++||||||+++.+.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 347899999999999999998863
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0025 Score=50.45 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++++|++|||||||++.+.+-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999985
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0026 Score=47.55 Aligned_cols=21 Identities=48% Similarity=0.620 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0027 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|++.|.+||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999763
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0023 Score=48.80 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|+++|++||||||+.+.|...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0025 Score=50.53 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999865
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0023 Score=50.19 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999865
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0024 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|++|||||||++.+.+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34478999999999999999998754
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0028 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0028 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
+.|+++|+|||||+|..++|....
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998643
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0027 Score=47.66 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|+++|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0029 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0036 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....|++.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0029 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0028 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.....|+++|+.|||||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999999876
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..-.++++|++|+|||||++.|.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 345789999999999999999885
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.003 Score=49.85 Aligned_cols=25 Identities=44% Similarity=0.639 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999865
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0017 Score=49.92 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=16.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-cC
Q psy12173 52 QRKILILGLDNSGKSTLIKQIS-SG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~-~~ 75 (224)
.-.++++|++||||||+++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999999 54
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0025 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
--++++|++|||||||++.+.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999873
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0033 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999875
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.004 Score=46.67 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+.|+++|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0033 Score=47.74 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0034 Score=47.11 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|+++|++||||||+.+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988764
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0036 Score=45.31 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999876
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0042 Score=46.77 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|++||||||+.+.|...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0039 Score=45.83 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|.+||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.004 Score=47.41 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0037 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0041 Score=46.52 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|++.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0045 Score=45.70 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.004 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|+++|++|||||||++.+.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4568999999999999999998874
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0036 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|+.|||||||++.+.+-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999998764
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0041 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0043 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0048 Score=49.59 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
.-.++++|++|+|||||++.+.+...+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccc
Confidence 347899999999999999999986533
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.005 Score=46.33 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0039 Score=45.61 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+|+++|++||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0035 Score=49.75 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999874
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0044 Score=45.77 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..++++|+.|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0049 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+.|++.|++||||||+.++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999975
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0057 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|+++|.+||||||+.+.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998753
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0032 Score=46.29 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=16.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0044 Score=49.90 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4578999999999999999999 54
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0048 Score=45.11 Aligned_cols=24 Identities=13% Similarity=0.432 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988764
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.004 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
=-++++|++|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 367999999999999999999865
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0047 Score=47.31 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|++.|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0029 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|+|||+|++.+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999998743
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0033 Score=51.95 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-+++++|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0038 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++|++||||||+++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998753
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0051 Score=45.90 Aligned_cols=25 Identities=36% Similarity=0.191 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|+++|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0029 Score=51.09 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 4578999999999999999998754
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0042 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.002 Score=47.42 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhh---ccCCCEEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTY---FEDTDLLVFVV 130 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~---~~~~d~ii~v~ 130 (224)
.++++|++|||||||++.+.....+. ++....+.+++..+.-+|.++.+.++.....+ +-..+..+++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~--------g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~ 75 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER--------GLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIR 75 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT--------TCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc--------CCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEe
Confidence 68999999999999999998753111 22344555665554455555666655321110 23446666655
Q ss_pred E
Q psy12173 131 D 131 (224)
Q Consensus 131 d 131 (224)
+
T Consensus 76 ~ 76 (171)
T 2f1r_A 76 R 76 (171)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0046 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467999999999999999999865
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0053 Score=46.96 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0052 Score=45.44 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0057 Score=46.55 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+.|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0048 Score=50.94 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3467999999999999999999865
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0058 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~ 73 (224)
....|+++|++||||||+++.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0049 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3467999999999999999999865
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.005 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
=.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 367999999999999999999865
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.005 Score=50.89 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3467999999999999999999865
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0071 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-|+++|+|||||+|..++|....
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999998643
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0051 Score=46.86 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|+++|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0059 Score=45.40 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|++.|.+||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0058 Score=47.67 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+.|++.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0055 Score=45.06 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-.+++|++|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999865
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0054 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 367999999999999999999865
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.006 Score=45.86 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++||||||+++.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.005 Score=50.25 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0056 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467999999999999999999865
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0053 Score=45.24 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998875
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.054 Score=40.86 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=45.3
Q ss_pred CCeEEEEEEcCCc-hhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 97 GEYTLNIFELGGQ-ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 97 ~~~~~~l~D~~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
+...+.++|+|+. ..... ...+..+|.+|+++..+.. ++......+..+.... +.++.++.|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~~~--~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDEDL--EALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSSHH--HHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcHHH--HHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 3478999999987 43322 2346689999999876543 4455555555544321 566889999999765
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0049 Score=50.93 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3589999999999999999999754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0063 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..-|++.|++||||||+.++|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999975
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.006 Score=44.31 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0073 Score=46.44 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|.+||||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998753
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0056 Score=50.81 Aligned_cols=24 Identities=38% Similarity=0.373 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++++|++||||||+++.+.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999863
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.007 Score=49.18 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+-|+++|++|||||||++.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0063 Score=47.63 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|+++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999864
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0053 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999873
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0058 Score=49.26 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.-.++++|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999984
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0075 Score=48.26 Aligned_cols=24 Identities=33% Similarity=0.231 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....|+++|++|||||||++.|..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988775
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0061 Score=48.22 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.++++|++|+|||||++.+.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 48999999999999999998643
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0074 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0078 Score=43.63 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0061 Score=49.11 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.-.++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999885
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0086 Score=43.96 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+.++|.+|||||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.007 Score=46.01 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
--++++|++|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999884
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0059 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-.++++|++||||||+++.+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999864
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0062 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0045 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 468999999999999999999865
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0082 Score=43.00 Aligned_cols=20 Identities=45% Similarity=0.637 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~ 73 (224)
-.+++|++|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999976
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0084 Score=47.05 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0061 Score=44.45 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999888754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0073 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=.++++|++|||||||++.+.+-.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3468999999999999999998743
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0093 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+.|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0087 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998753
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0089 Score=46.25 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+.|++.|++||||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0072 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++||||||+++.+.+.-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998754
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0063 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|++||||||+.+.|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998753
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0035 Score=47.31 Aligned_cols=22 Identities=41% Similarity=0.672 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|++.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0074 Score=49.20 Aligned_cols=138 Identities=13% Similarity=0.157 Sum_probs=72.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CCCCC-----------CCceeEEEEE----------------
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLS--------HNLKP-----------TEGFNITILQ---------------- 95 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~--------~~~~~-----------t~~~~~~~~~---------------- 95 (224)
..-.++++|++|+||||+++.+.+...+.. +.+.. ..+..+..-.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 345789999999999999999885321110 00000 0111011000
Q ss_pred -eCCeEEEEEEcCCchh----HHHHH---HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 96 -KGEYTLNIFELGGQEN----VRRFW---NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 96 -~~~~~~~l~D~~G~~~----~~~~~---~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
..+..+.++|++|... ..... .. .-..|-.++++|..... +..+....+... -..-.+++||.|
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~r-al~~de~llvLDa~t~~---~~~~~~~~~~~~----~~it~iilTKlD 279 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIAR-VTKPNLVIFVGDALAGN---AIVEQARQFNEA----VKIDGIILTKLD 279 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHH-HHCCSEEEEEEEGGGTT---HHHHHHHHHHHH----SCCCEEEEECGG
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHH-HhcCCCCEEEEecHHHH---HHHHHHHHHHHh----cCCCEEEEeCcC
Confidence 0134567899999532 11111 11 12478899999987763 333344444322 123378889999
Q ss_pred CCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 168 VPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 168 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
...... .-.+....+. ++..++ +|+++++
T Consensus 280 ~~a~~G~~l~~~~~~~~----------pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 280 ADARGGAALSISYVIDA----------PILFVG--VGQGYDD 309 (328)
T ss_dssp GCSCCHHHHHHHHHHTC----------CEEEEE--CSSSTTC
T ss_pred CccchhHHHHHHHHHCC----------CEEEEe--CCCCccc
Confidence 743311 1122222222 666666 7777743
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0089 Score=46.56 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..++++|++|+|||++++.+...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0086 Score=46.01 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...-|++.|+.||||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457899999999999999999875
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.028 Score=47.71 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=37.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHh------------------cCCCCCCCCCC-CCCceeEEE----EEe---CCeEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQIS------------------SGNTSLSHNLK-PTEGFNITI----LQK---GEYTLNI 103 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~------------------~~~~~~~~~~~-~t~~~~~~~----~~~---~~~~~~l 103 (224)
.+..-|.|+|+.++|||+|+|.++ ...|....... .|.|.-... +.. .+..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 356677899999999999999654 12333322222 345533221 111 2367999
Q ss_pred EEcCCc
Q psy12173 104 FELGGQ 109 (224)
Q Consensus 104 ~D~~G~ 109 (224)
+||.|.
T Consensus 145 lDTEG~ 150 (457)
T 4ido_A 145 MDTQGT 150 (457)
T ss_dssp EEECCB
T ss_pred EeccCC
Confidence 999994
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.01 Score=44.31 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0045 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 467999999999999999999865
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.012 Score=44.09 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+.|+++|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35688999999999999999999865
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.011 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.--++++|++|+|||||+..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999986
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0091 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..--++++|++|+|||||++.+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3446899999999999999988753
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0088 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-.++++|+.|||||||++.+.+.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 457999999999999999998864
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.012 Score=45.17 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.--++++|++|+|||||+..+...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 347899999999999999999874
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.01 Score=48.99 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..-.++++|++||||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345789999999999999999885
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.013 Score=44.19 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|+++|.+||||||+.+.|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.013 Score=46.52 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+.|++.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.12 Score=41.67 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347999999999999999999754
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.011 Score=48.48 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-+++++|++|+|||||++.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999865
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.013 Score=43.89 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.013 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..=.++++|++|+|||||++.+.+..
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999999865
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.015 Score=45.10 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999763
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.012 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++||||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.015 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.013 Score=44.36 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.016 Score=44.58 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...-|++.|++||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999864
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.013 Score=48.42 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~ 73 (224)
-.+++|++|+|||||++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999999999987
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.012 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..-.++++|++||||||+++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 445789999999999999999875
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=47.98 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..++++|+.|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 467899999999999999999653
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.015 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|+||+|||+|.+.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356788899999999999999864
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.013 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
-.++++|++|+|||||++.+.+...+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 36799999999999999999986533
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.014 Score=46.34 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0092 Score=42.24 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...|++.|++|+|||++.+.+....
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC
Confidence 3469999999999999999887643
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.015 Score=46.36 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..|++.|.+||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.018 Score=45.88 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...+++.|++|+|||++.+.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999986654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.016 Score=46.37 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999999864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.02 Score=44.07 Aligned_cols=24 Identities=42% Similarity=0.386 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....|+++|.+||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.02 Score=50.36 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 478999999999999999998755
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.019 Score=42.84 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999875
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.021 Score=44.83 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....+++.|++|+|||++++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4468999999999999999999864
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.015 Score=49.88 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-.++++|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.02 Score=44.12 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=21.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...++++++|++||||||+.++|...
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998753
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.015 Score=44.04 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-.+++.|+||+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999988877764
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.018 Score=47.82 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999985
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.015 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998863
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.021 Score=50.12 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999865
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.019 Score=48.53 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|++.||||+|||++.+++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3458999999999999999999864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.018 Score=50.94 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
.-.++++|++|+|||||++.+.+...+
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 346899999999999999999986533
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.018 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..--++++|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998885
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.02 Score=49.84 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
=.++++|++|+|||||++.+.+...+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 36789999999999999999986533
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.018 Score=48.87 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-+++++|++|+|||||++.+.+..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4478999999999999999999864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.02 Score=43.28 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+.|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.02 Score=50.53 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=22.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
..-.++++|++|+|||||++.+.+...
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 344789999999999999999998653
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.022 Score=42.92 Aligned_cols=20 Identities=45% Similarity=0.637 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~ 73 (224)
-.+++|++|+||||++..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999999875
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.12 Score=41.34 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+++.|++|+|||++++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999875
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.022 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..-|++.|+||+|||++++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999863
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.022 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
.++++|++|+|||||++.+.+...+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999986533
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.021 Score=43.74 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.--+++.|++|+|||+|+.++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999887753
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.022 Score=45.28 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.023 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.++++|++|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.019 Score=46.93 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||+|++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998863
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.024 Score=47.95 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...-|++.|+||+|||+|.+++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999999864
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.023 Score=46.70 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.+++.|++|+|||++++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999988643
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.023 Score=50.10 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3478999999999999999998755
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.027 Score=44.95 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998864
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.026 Score=45.59 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-|+++|++|||||+|...+....
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 457899999999999999998643
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.36 E-value=0.027 Score=45.51 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.02 Score=50.34 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-.++++|++|||||||++.+.+-.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3478999999999999999988754
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.027 Score=42.43 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
....|+++|++|+|||+|...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999998754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.028 Score=45.51 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999864
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.018 Score=46.83 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
++++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998876
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.023 Score=47.55 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|++.|+||+|||+|.+++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.027 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..-|+++|.+||||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999764
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.024 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
++++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998864
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.026 Score=45.18 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=60.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-----CC----CCCCCCC-----------CceeEEEE-----------EeCCeE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT-----SL----SHNLKPT-----------EGFNITIL-----------QKGEYT 100 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~-----~~----~~~~~~t-----------~~~~~~~~-----------~~~~~~ 100 (224)
...++++|++|+||||++..+..... .. .+.+.+. .+...... ...+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 45789999999999999988863211 00 0011110 00000000 014568
Q ss_pred EEEEEcCCchhHHH----HHHhhcc--CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 101 LNIFELGGQENVRR----FWNTYFE--DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 101 ~~l~D~~G~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+.++||+|...... .....+. ..+.+++|+|.+.. ...+.++...+ ..-+. .-++.||.|....
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~----~~l~~-~giVltk~D~~~~ 254 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRF----SSVPV-NQYIFTKIDETTS 254 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTT----SSSCC-CEEEEECTTTCSC
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHH----hcCCC-CEEEEeCCCcccc
Confidence 99999999654321 1112232 36788999988764 33333322222 11122 3456699998654
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.02 Score=50.32 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-.++++|++|||||||++.+.+-.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999998754
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.026 Score=46.27 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=22.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...--+.++|++|+|||||+..+....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999998653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.029 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGNTS 78 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~~~ 78 (224)
++++|+.|+|||||++.+.+-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999986533
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.01 E-value=0.023 Score=44.42 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+...|++.|..||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998764
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=93.99 E-value=0.035 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|+++|++|||||||...|...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998853
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.032 Score=45.61 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|+++|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36899999999999999988753
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.03 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...|+++|++|+||||++..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34689999999999999998874
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.035 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.036 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-|+++|++|||||+|...|....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 368999999999999999998654
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.03 Score=45.43 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||++++.+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999998864
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.035 Score=43.36 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..+++.|++|+|||++.+.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 579999999999999999998654
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=93.90 E-value=0.034 Score=45.37 Aligned_cols=19 Identities=47% Similarity=0.707 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy12173 55 ILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~ 73 (224)
.+++|++|+|||+++.++.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3799999999999999874
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.034 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998853
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.015 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.+++.|++|+|||++++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998853
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.036 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998864
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.032 Score=47.04 Aligned_cols=24 Identities=21% Similarity=0.515 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..-|++.|+||+|||+|.+++.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.038 Score=45.34 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++.+.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.032 Score=45.65 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....+++.|++|+|||++++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998853
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.035 Score=45.56 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|++.|++|+|||++++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999864
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.037 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||||++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 47899999999999999999754
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.043 Score=40.63 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.022 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=17.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+.|++.|+.||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.043 Score=45.05 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....+++.|++|+|||++++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.046 Score=41.56 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=20.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
+...-|++.|.+||||||+++.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3456789999999999999999864
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.044 Score=42.21 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998864
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.039 Score=47.09 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++++|++|+|||++++.+...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999999999988754
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.03 Score=45.30 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~ 73 (224)
-.+++|++|+|||+|++.+.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 56899999999999999998
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.036 Score=48.06 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy12173 55 ILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~ 73 (224)
++++|++|||||||++.+.
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 224 | ||||
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 4e-17 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-16 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 5e-16 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-15 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 4e-15 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 5e-15 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 1e-14 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-14 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 5e-14 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-13 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 1e-13 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 2e-13 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 7e-13 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 1e-12 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-12 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 2e-12 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 6e-12 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 9e-12 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 6e-11 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 8e-11 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 2e-10 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 3e-10 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 5e-10 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 7e-10 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 1e-09 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 6e-09 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-08 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 1e-08 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 3e-08 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 6e-08 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 1e-07 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 1e-07 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 5e-07 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 5e-07 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 1e-06 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 2e-06 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 5e-06 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 6e-06 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 1e-05 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 1e-05 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 2e-05 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 3e-05 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 4e-05 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 4e-05 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 5e-05 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 6e-05 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 6e-05 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 2e-04 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 2e-04 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 3e-04 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 3e-04 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 4e-04 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 8e-04 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 0.001 |
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.8 bits (183), Expect = 4e-17
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++L+LG SGKST++KQ+ + T G T Q + ++F++GGQ + R
Sbjct: 8 RLLLLGAGESGKSTIVKQMRILHVV------LTSGIFETKFQVDKVNFHMFDVGGQRDER 61
Query: 114 RFWNTYFEDTDLLVFVVDSADP----------SKLPVAAMELKNLLGDQRLSTVPILVIA 163
R W F D ++FVV S+ ++L A K++ ++ L T+ +++
Sbjct: 62 RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFL 121
Query: 164 NKQD 167
NKQD
Sbjct: 122 NKQD 125
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 71.9 bits (175), Expect = 2e-16
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLD +GK+T++ ++ G S PT GFN+ + N++++GGQ+ +R
Sbjct: 14 RILMLGLDAAGKTTILYKLKLGQ---SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 70
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y+ T L+FVVD AD ++ A EL ++ D+ + IL+ ANKQD+P A+
Sbjct: 71 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 130
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQAPSN 203
E+ L L+ I R + + A S
Sbjct: 131 PHEIQEKLGLTRI--RDRNWYVQPSCATSG 158
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.6 bits (174), Expect = 5e-16
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENV 112
R +L +GL +SGK+ L ++ +G + + + I + N L
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---TSITDSSAIYKVNNNRGNSLTLIDLPGH 57
Query: 113 RRF----WNTYFEDTDLLVFVVDSADPSK-LPVAAMELKNLLGDQRLS--TVPILVIANK 165
+ + +VFVVDSA + + A L +L D + +L+ NK
Sbjct: 58 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 117
Query: 166 QDVPGALSAEEV 177
QD+ A SA+ +
Sbjct: 118 QDIAMAKSAKLI 129
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 68.4 bits (166), Expect = 4e-15
Identities = 61/140 (43%), Positives = 95/140 (67%), Gaps = 3/140 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL+LGLDN+GK+TL+KQ++S + S T+GFNI +Q + LN++++GGQ +R
Sbjct: 18 RILLLGLDNAGKTTLLKQLASEDISHITP---TQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W +YFE+TD+L++V+DSAD + EL LL +++LS VP+L+ ANKQD+ A
Sbjct: 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 174 AEEVGVALDLSSISSRQHRI 193
A E+ L+L +I R +I
Sbjct: 135 ASEIAEGLNLHTIRDRVWQI 154
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 68.5 bits (166), Expect = 4e-15
Identities = 59/147 (40%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+ILILGLD +GK+T++ ++ G KPT GFN+ L LN+++LGGQ ++R
Sbjct: 19 RILILGLDGAGKTTILYRLQIGE---VVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 75
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W Y+ DT ++FVVDS D ++ A+ EL +L ++ L +LV ANKQD PGALS
Sbjct: 76 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS 135
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQA 200
A EV L+L + + ++A+ A
Sbjct: 136 ASEVSKELNLVEL--KDRSWSIVASSA 160
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.2 bits (166), Expect = 5e-15
Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 2/127 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ--KGEYTLNIFELGGQEN 111
K+L++G GK+ ++ + S + + F I ++ L I++ GQE
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
R Y+ ++ V D + ++N+ +++
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 172 LSAEEVG 178
++E G
Sbjct: 128 QVSKERG 134
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.6 bits (164), Expect = 1e-14
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
KIL+LG SGKST +KQ+ + H PT+G + + + ++GGQ + R
Sbjct: 4 KILLLGAGESGKSTFLKQM-----RIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKL----------PVAAMELKNLLGDQRLSTVPILVIA 163
+ W F+ ++F+V S++ ++ + + ++ ++ S V I++
Sbjct: 59 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118
Query: 164 NKQD 167
NK D
Sbjct: 119 NKTD 122
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 65.4 bits (158), Expect = 3e-14
Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 5/147 (3%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+IL++GLD +GK+T++ ++ G + PT GFN+ ++ + ++++GGQ+ +R
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNISFTVWDVGGQDKIR 58
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W YF++T L+FVVDS D ++ A EL +L + L +LV ANKQD+P A++
Sbjct: 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQA 200
A E+ L L S+ R + AT A
Sbjct: 119 AAEITDKLGLHSL--RHRNWYIQATCA 143
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.1 bits (157), Expect = 5e-14
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
K+L LGLDN+GK+TL+ + + + L+PT L G F+LGG R
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 58
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
R W YF + + +VF+VD+ADP + A +EL L L VP +++ NK D P A+S
Sbjct: 59 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 118
Query: 174 AEEVGVALDLSSISSRQH 191
E+ AL L + + Q
Sbjct: 119 EAELRSALGLLNTTGSQR 136
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 64.3 bits (155), Expect = 1e-13
Identities = 62/140 (44%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++L+LGLDN+GK+T++K+ + + + PT GFNI L+ + LNI+++GGQ+++R
Sbjct: 4 RLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W YFE TD L++VVDSAD ++ EL++LL ++RL+ +L+ ANKQD+PGALS
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 174 AEEVGVALDLSSISSRQHRI 193
+ AL+L SI S RI
Sbjct: 121 CNAIQEALELDSIRSHHWRI 140
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 64.3 bits (155), Expect = 1e-13
Identities = 50/149 (33%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ K++I+GLDN+GK+T++ Q S + PT G N+ + ++++GGQE+
Sbjct: 15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTS---PTIGSNVEEIVINNTRFLMWDIGGQES 71
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
+R WNTY+ +T+ ++ VVDS D ++ V EL +L + L +L+ ANKQDV
Sbjct: 72 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQA 200
++ E+ L L+SI + H+ + A A
Sbjct: 132 MTVAEISQFLKLTSI--KDHQWHIQACCA 158
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.6 bits (154), Expect = 2e-13
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI----LQKGEYTLNIFELGGQ 109
KIL++G GKS L+ + + + T G + I + + L I++ GQ
Sbjct: 4 KILLIGDSGVGKSCLLVRFVED--KFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPS 136
E R Y+ ++ V D D
Sbjct: 62 ERFRTITTAYYRGAMGIILVYDITDER 88
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 62.8 bits (151), Expect = 7e-13
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 7/175 (4%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
K++ LGLDN+GK+TL+ + PT L T F+LGG
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTSEELTIAGMTFTTFDLGGHIQ 69
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
RR W Y + +VF+VD AD +L + EL +L+ D+ ++ VPIL++ NK D P A
Sbjct: 70 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 129
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAE---QAMYALSQ 223
+S E + L ++ + + L A L SV++ + + ++Q
Sbjct: 130 ISEERLREMFGLYGQTTGKGSVSLKELNA-RPLEVFMCSVLKRQGYGEGFRWMAQ 183
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 61.2 bits (147), Expect = 1e-12
Identities = 50/147 (34%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
++ ++GL SGK+T + I+SG + ++ PT GFN+ + KG T+ ++++GGQ R
Sbjct: 4 ELTLVGLQYSGKTTFVNVIASGQ--FNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 61
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
W Y +V++VD+AD K+ + EL NLL +L +P+LV+ NK+D+PGAL
Sbjct: 62 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD 121
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQA 200
+E+ ++LS+I + I +
Sbjct: 122 EKELIEKMNLSAI--QDREICCYSISC 146
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.9 bits (149), Expect = 2e-12
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
K+L+LG SGKST++KQ+ + G T + +F++GGQ + R
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHE-------AGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAM----------ELKNLLGDQRLSTVPILVIA 163
+ W FE ++F V +D + ++ ++ + I++
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 164 NKQD 167
NK+D
Sbjct: 117 NKKD 120
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (148), Expect = 2e-12
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ--KGEYTLNIFELGGQEN 111
K++++G GKS L+ + + +L F +Q I++ GQE
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
RR + Y+ + V D A LK L D S + I+++ NK D
Sbjct: 66 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR-DHADSNIVIMLVGNKSD 120
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.3 bits (145), Expect = 6e-12
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 45 SKVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI----LQKGEYT 100
S+ D +F K+L++G GKS L+ + S + +++ T G + I L
Sbjct: 1 SEYDYLF--KLLLIGNSGVGKSCLLLRFSDD--TYTNDYISTIGVDFKIKTVELDGKTVK 56
Query: 101 LNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPIL 160
L I++ GQE R ++Y+ + ++ V D D + STV L
Sbjct: 57 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES-FNGVKMWLQEIDRYATSTVLKL 115
Query: 161 VIANK 165
++ NK
Sbjct: 116 LVGNK 120
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.0 bits (144), Expect = 9e-12
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 14/126 (11%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
+ K+L+LG SGKST IKQ+ + + PT G + ++GGQ +
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHG----SGVPTTGIIEYPFDLQSVIFRMVDVGGQRS 57
Query: 112 VRRFWNTYFEDTDLLVFVVDSADP----------SKLPVAAMELKNLLGDQRLSTVPILV 161
RR W FE+ ++F+V ++ +++ + + ++ +++
Sbjct: 58 ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117
Query: 162 IANKQD 167
NK+D
Sbjct: 118 FLNKKD 123
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (137), Expect = 6e-11
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 2/116 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ--KGEYTLNIFELGGQEN 111
KI+++G GK+ L+++ + G F I ++ + L I++ GQE
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
R +Y+ + L+ D L+ + + +LV
Sbjct: 67 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 122
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.4 bits (135), Expect = 8e-11
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL--QKGEYTLNIFELGGQEN 111
KILI+G + GK++ + + + + + + F + + L I++ GQE
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKN 147
R Y+ + + D +
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ 102
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (133), Expect = 2e-10
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 3/113 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG--EYTLNIFELGGQEN 111
K L++G +GKS L+ Q N F I+ G L I++ GQE
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIAN 164
R +Y+ + V D A + I++ N
Sbjct: 67 FRSVTRSYYRGAAGALLVYDITSRETYN-ALTNWLTDARMLASQNIVIILCGN 118
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.8 bits (133), Expect = 3e-10
Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 12/135 (8%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQE 110
+Q I+I G NSGK++L+ +++ + + ++ + + + G
Sbjct: 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----VSQEPLSAADYDGSGVTLVDFPGHV 57
Query: 111 NVRRFWNTYF----EDTDLLVFVVDSADPSKLPVAAME----LKNLLGDQRLSTVPILVI 162
+R + Y + L+F+VDS K E + ++ + + IL+
Sbjct: 58 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 117
Query: 163 ANKQDVPGALSAEEV 177
NK ++ A ++
Sbjct: 118 CNKSELFTARPPSKI 132
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 5e-10
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
KILI+G GKS+L+ + + + L+ + + + L I++ GQE
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPS 136
R +Y+ ++ V D
Sbjct: 69 FRTLTPSYYRGAQGVILVYDVTRRD 93
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (129), Expect = 7e-10
Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 16/128 (12%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--------------FNITILQKGEY 99
K+L LG GK+T + + + + T G N + + +
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDN--KFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64
Query: 100 TLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPI 159
L +++ GQE R +F D + + D + L + I
Sbjct: 65 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 124
Query: 160 LVIANKQD 167
++I NK D
Sbjct: 125 VLIGNKAD 132
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 1e-09
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
K +I+G GKS L+ Q + H + G I + + L I++ GQE
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
R +Y+ + V D S + L + + I++I NK D
Sbjct: 66 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIILIGNKAD 120
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 6e-09
Identities = 22/153 (14%), Positives = 53/153 (34%), Gaps = 9/153 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT---ILQKGEYTLNIFELGGQE 110
K++++G GK+ L+ + G + + + L +++ GQE
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170
R + Y+ D L+ + D + + L + + +L+
Sbjct: 68 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127
Query: 171 ALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203
+ E G L ++++ + + T A +
Sbjct: 128 RVVKREDGEKL------AKEYGLPFMETSAKTG 154
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 50.5 bits (119), Expect = 1e-08
Identities = 45/147 (30%), Positives = 87/147 (59%), Gaps = 5/147 (3%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113
+ILILGLD +GK+T++ ++ G + PT GFN+ + +++LGG ++R
Sbjct: 7 RILILGLDGAGKTTILYRLQVGEVVTTI---PTIGFNVETVTYKNLKFQVWDLGGLTSIR 63
Query: 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173
+W Y+ +TD +++VVDS D ++ ++ EL +L ++ L ++V ANKQD+ A++
Sbjct: 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123
Query: 174 AEEVGVALDLSSISSRQHRIKLIATQA 200
+ E+ +L L ++ + + ++ T A
Sbjct: 124 SSEMANSLGLPAL--KDRKWQIFKTSA 148
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (120), Expect = 1e-08
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
K +I+G GKS L+ Q + + G + + + L I++ GQE+
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
R +Y+ + V D L++ S + I++I NK D
Sbjct: 65 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR-QHSSSNMVIMLIGNKSD 119
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (117), Expect = 3e-08
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 5/117 (4%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ---KGEYTLNIFELGGQE 110
K+++LG GKS L Q +G + PT L I + G E
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTG--TFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
+ Y ++ + V + ++ +R VP++++ NK D
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.5 bits (114), Expect = 6e-08
Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI----LQKGEYTLNIFELGGQ 109
KI+++G N GK+ L + +G + T G + + + +++ GQ
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAG--RFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61
Query: 110 ENVRR-FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
E R+ Y+ + +VFV D + + ++ + +P +++ NK D+
Sbjct: 62 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121
Query: 169 P 169
Sbjct: 122 R 122
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 1e-07
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 50 IFQRKILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQKGEYTLNIFELG 107
I Q K+++LG GKS+L+ + G + + L I++
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 108 GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMEL 145
GQE Y+ + V D + A +
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV 101
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 1e-07
Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
K++ LG + GK++LI + + + + L+ L +++ GQE
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
R +Y D+ V V D + + + ++ +R S V I+++ NK D
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR-TERGSDVIIMLVGNKTD 116
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 5e-07
Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 2/117 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV 112
K +++G GK+ L+ ++ + + ++ ++ G+ L +++ GQE+
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169
R + TD + + S PI+++ K D+
Sbjct: 67 DRLRPLSYPQTD-VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 45.7 bits (107), Expect = 5e-07
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTE-GFNITILQKGEYTLNIFELGGQENV 112
K++++G GKS L Q + + +L E ++I + GQE+
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
+ YF + + V + A + +L + VP L++ NK D
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 1e-06
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 54 KILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
K+++LG GKS+L+ + + +T L H + + T+ I++ GQE
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67
Query: 112 VRRFWNTYFEDTD---LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
R ++ +D L V DS L E + + P +++ NK D+
Sbjct: 68 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127
Query: 169 PGALSAEEVGVAL 181
+ E A
Sbjct: 128 SERQVSTEEAQAW 140
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 43.8 bits (102), Expect = 2e-06
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLK-----------PTEGFNITILQKGEYTLN 102
+++I+G N GKSTL+ ++ + + ++ ++ G I+
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
Query: 103 IFELGGQENVRRFWNTYFEDTDLLVFVVDSADP 135
+L + + R E D+++FV+D++ P
Sbjct: 62 TNDLVERLGIERTLQE-IEKADIVLFVLDASSP 93
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.1 bits (100), Expect = 5e-06
Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 5/152 (3%)
Query: 54 KILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
K+++LG GKS+++ + S + + + + I++ GQE
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171
Y+ + + V D P A +K L +Q + I ++ NK D+
Sbjct: 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDMLQE 123
Query: 172 LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203
+ VA + + + + T A +
Sbjct: 124 GGERK--VAREEGEKLAEEKGLLFFETSAKTG 153
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 6e-06
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 6/119 (5%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN---ITILQKGEYTLNIFELGGQE 110
K +++G GK+ L+ ++ PT N ++ YTL +F+ GQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169
+ R + TD+ + PS E P L++ + D+
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFE-NVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 1e-05
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE---YTLNIFELGG 108
++K++I+G GK+ L+ S PT N + + L +++ G
Sbjct: 2 RKKLVIVGDGACGKTCLLIVNSKD--QFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 59
Query: 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
E+ R + DTD+++ P L + + VPI+++ NK+D+
Sbjct: 60 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDL 118
Query: 169 P 169
Sbjct: 119 R 119
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.0 bits (97), Expect = 1e-05
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
K++++G GKS++I++ G + + + L +++ GQE
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLP 139
Y+ V V + D
Sbjct: 64 FDAITKAYYRGAQACVLVFSTTDRESFE 91
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 2e-05
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 1/115 (0%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV 112
K+++LG GKS L Q G ++ + + + + L I + G E
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
+ Y ++ V S + +L + VP++++ NK D
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 3e-05
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 51 FQRKILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQKGEYTLNIFELGG 108
+ K+++LG GK++L+ + N L + + L I++ G
Sbjct: 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61
Query: 109 QENVRRFWNTYFEDTDLLVFVVDSADPS 136
QE Y+ D++ + V D D
Sbjct: 62 QERFHALGPIYYRDSNGAILVYDITDED 89
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.8 bits (94), Expect = 4e-05
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG----FNITILQKGEYTLNIFELGGQ 109
K++ILG GK++L+ Q + S+ K T G ++ T+ I++ GQ
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61
Query: 110 ENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLL---GDQRLSTVPILVIANKQ 166
E + ++ D V V D P+ L + P +V+ NK
Sbjct: 62 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121
Query: 167 D 167
D
Sbjct: 122 D 122
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.4 bits (93), Expect = 4e-05
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-----FNITILQKGEYTLNI 103
+I K++ILG GK++L+ + + S K T G +T+ T+ +
Sbjct: 1 NIL--KVIILGDSGVGKTSLMHRYVND--KYSQQYKATIGADFLTKEVTVDGDKVATMQV 56
Query: 104 FELGGQENVRRFWNTYFEDTDLLVF 128
++ GQE + ++ D V
Sbjct: 57 WDTAGQERFQSLGVAFYRGADCCVL 81
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 5e-05
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV 112
K++++G GKS L Q+ + ++ + + ++ GE L+I + GQE
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
+ Y + + V + + + + VP++++ NK D
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.0 bits (92), Expect = 6e-05
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 1/115 (0%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-YTLNIFELGGQENV 112
K++++G GKS L Q ++ + + + L++ + GQE
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
Y D + V D + + +L + + P++++ANK D
Sbjct: 66 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 120
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.0 bits (92), Expect = 6e-05
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE---YTLNIFELGG 108
+ KI+++G GK+ L+ + N PT N T + + L++++ G
Sbjct: 2 KCKIVVVGDSQCGKTALLHVFAKD--CFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 59
Query: 109 QENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168
+ D+D ++ D + P L + K + +L++ K D+
Sbjct: 60 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKG-EIQEFCPNTKMLLVGCKSDL 118
Query: 169 PG 170
Sbjct: 119 RT 120
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 1/117 (0%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELG-GQE 110
K++++G GKS L Q ++ + + G GQE
Sbjct: 6 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 65
Query: 111 NVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
Y + V D +L + P++++ NK D
Sbjct: 66 EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.4 bits (88), Expect = 2e-04
Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 2/94 (2%)
Query: 54 KILILGLDNSGKSTLIKQISSG--NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
K+ +LG GKS+++ + + +++ + + Q + I++ G E
Sbjct: 6 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMEL 145
R Y+ + + V D +
Sbjct: 66 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV 99
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 3e-04
Identities = 14/116 (12%), Positives = 38/116 (32%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQEN 111
Q K++++G +GK+T +K+ +G + + + +
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 112 VRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
+ ++ S++ + + + +PI++ NK D
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD 118
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (86), Expect = 3e-04
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 55 ILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGG------ 108
I I+G N GKSTL+ ++ S++ T I + I+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 109 ----QENVRRFWNTYFEDTDLLVFVVDSAD 134
+ + ++ D +L++FVV+
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTR 97
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 4e-04
Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 2/115 (1%)
Query: 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQENV 112
K +++G GK+ L+ ++ + + + +++ G +Y L +++ GQE+
Sbjct: 11 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70
Query: 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167
R + TD + + S E + VP L+I + D
Sbjct: 71 DRLRPLSYPMTD-VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID 124
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 8e-04
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKG-EYTLNIFELGGQE 110
RKI ILG + GKS+L Q G S++ F I G EY L + + GQ+
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 63
Query: 111 NVRRFWNTYF 120
F TY
Sbjct: 64 EYSIFPQTYS 73
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 36.7 bits (84), Expect = 0.001
Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 14/137 (10%)
Query: 46 KVDDIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE------- 98
K +D+ IL++G GKS+ + I + + + +
Sbjct: 26 KQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNII 85
Query: 99 YTLNIFELG-----GQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAME-LKNLLGDQ 152
T + E G ++ F D L V +D+ L + + + G
Sbjct: 86 DTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG 145
Query: 153 RLSTVPILVIANKQDVP 169
+ I+ + + Q P
Sbjct: 146 IWNKA-IVALTHAQFSP 161
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 224 | |||
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.98 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.97 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.97 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.97 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.97 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.96 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.96 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.96 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.96 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.96 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.96 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.96 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.95 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.95 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.95 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.95 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.95 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.94 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.94 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.94 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.92 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.92 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.9 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.89 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.89 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.88 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.88 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.88 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.88 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.87 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.87 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.86 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.86 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.86 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.85 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.83 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.83 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.83 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.83 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.82 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.82 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.8 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.79 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.77 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.75 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.72 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.71 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.7 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.7 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.68 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.66 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.65 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.46 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.44 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.44 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.33 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.33 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.22 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.21 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.04 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.02 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.95 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.9 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.27 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.18 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.98 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.94 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.8 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.78 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.69 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.69 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.67 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.65 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.65 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.45 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.42 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.35 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.26 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.18 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.13 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.12 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.11 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.1 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.09 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.04 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.02 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.99 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.97 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.96 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.95 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.94 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.91 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.84 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.84 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.78 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.76 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.74 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.74 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.68 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.67 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.67 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.66 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 96.63 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.61 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.59 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.59 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.56 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.56 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.53 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.53 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.5 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 96.47 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.46 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 96.46 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.44 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.43 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 96.43 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 96.42 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.4 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.39 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 96.38 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.35 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 96.35 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.33 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.32 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.3 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.29 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.26 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.24 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 96.23 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 96.22 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 96.22 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.21 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 96.17 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.13 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.11 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.1 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.09 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.03 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 96.02 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.01 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.98 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 95.98 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.89 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.86 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.85 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.84 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.82 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.82 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.75 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.72 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 95.71 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.71 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.7 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.61 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.45 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.4 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.37 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.36 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.28 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.26 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.21 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.21 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.19 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.16 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.1 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.94 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.7 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.59 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.57 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.49 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.47 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.41 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.37 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.35 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.19 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 94.18 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.18 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.01 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.97 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.94 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 93.86 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.86 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.82 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.77 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.76 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 93.74 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.66 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.64 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.55 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.5 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 93.49 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.48 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.4 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.35 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 93.25 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.23 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.01 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.92 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.67 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.47 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.38 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 92.34 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.07 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.94 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.89 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.84 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 91.63 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.56 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.55 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 91.38 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.15 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.0 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.55 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.35 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 89.9 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.12 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.72 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.64 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 87.83 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 87.46 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 86.99 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 86.96 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 85.97 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 83.77 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 82.97 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 82.67 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 80.7 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 80.23 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 80.14 |
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.98 E-value=2e-31 Score=197.43 Aligned_cols=156 Identities=32% Similarity=0.583 Sum_probs=141.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.+||+++|++++|||||++++..+.+.. .+.||.++....+..++..+.+||+||++.+...+..++..++++++|+|
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~--~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 79 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNE--DMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD 79 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC--cccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccc
Confidence 4799999999999999999999999887 77899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
+++.+++.+...++..+.......++|+++|+||.|+.+.....++.+.++......+.+ +++++||++|+|+++.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~e~Sa~~g~gv~e~~~ 157 (164)
T d1zd9a1 80 AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREI--CCYSISCKEKDNIDITLQ 157 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECCTTTCTTHHHHHH
T ss_pred cccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCC--EEEEEeCcCCcCHHHHHH
Confidence 999999999999999998876667899999999999998888888888887766666665 899999999999965554
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.97 E-value=6.2e-31 Score=194.78 Aligned_cols=161 Identities=39% Similarity=0.662 Sum_probs=139.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.+||+++|++|+|||||+++|.+..+. ...+|.++....+..++..+.+||+||++.++..+..++..++++++|+|
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d 78 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 78 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCCS---SCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCCC---cccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeee
Confidence 579999999999999999999988753 56788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 132 SADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 132 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
+++..++.....++..........+.|+++|+||.|+.+....++..+.+.......+.+ ++++|||++|+|+++.+.
T Consensus 79 ~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~g~gv~e~~~ 156 (165)
T d1ksha_ 79 SADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHW--RIQGCSAVTGEDLLPGID 156 (165)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECCTTTCTTHHHHHH
T ss_pred cccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCC--EEEEEECCCCCCHHHHHH
Confidence 999999999999998888766567899999999999998888888888877666555555 899999999999955554
Q ss_pred HHHHHHH
Q psy12173 212 VEAEQAM 218 (224)
Q Consensus 212 ~~i~~~l 218 (224)
.+.+.+
T Consensus 157 -~l~~~i 162 (165)
T d1ksha_ 157 -WLLDDI 162 (165)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 444433
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.97 E-value=1.3e-30 Score=195.03 Aligned_cols=158 Identities=39% Similarity=0.675 Sum_probs=137.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
++.+||+++|++|+|||||++++.++.+.. ..++.+++...+..++..+.+||++|++.++..+..+++.+|++++|
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~---~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 90 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE---EEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcCCCCc---ceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence 456899999999999999999999988653 44677888888888999999999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
+|+++..++.+...++..+.......++|+++++||+|+.+.....++.+.++......+.+ ++++|||++|+|+++.
T Consensus 91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~SA~tg~gv~e~ 168 (176)
T d1fzqa_ 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVW--QIQSCSALTGEGVQDG 168 (176)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECCTTTCTTHHHH
T ss_pred eccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCC--EEEEEeCCCCCCHHHH
Confidence 99999999999999998888776666899999999999998888888888887665555555 8999999999999555
Q ss_pred hHH
Q psy12173 210 SVV 212 (224)
Q Consensus 210 ~~~ 212 (224)
|..
T Consensus 169 ~~~ 171 (176)
T d1fzqa_ 169 MNW 171 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.97 E-value=1.5e-30 Score=195.80 Aligned_cols=163 Identities=37% Similarity=0.598 Sum_probs=137.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+.+||+++|++|+|||||++++..+.+.. ..+|.+........++..+.+||+||++.++..+..++..+|++++|+
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~ 92 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGEVVT---TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV 92 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEE---ECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc---cccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEe
Confidence 46899999999999999999999887643 457888888888889999999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|++++.++.+...++..........+.|+++++||+|+.+....+++.+.+.......+.+ +|++|||++|+|+++.|
T Consensus 93 d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~e~SA~~g~gv~e~~ 170 (182)
T d1moza_ 93 DSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSW--SIVASSAIKGEGITEGL 170 (182)
T ss_dssp ETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCE--EEEEEBGGGTBTHHHHH
T ss_pred eecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCC--EEEEEECCCCCCHHHHH
Confidence 9999999999999999888876667899999999999998888889888887666555555 89999999999995544
Q ss_pred HHHHHHHHH
Q psy12173 211 VVEAEQAMY 219 (224)
Q Consensus 211 ~~~i~~~l~ 219 (224)
. .+.+.+.
T Consensus 171 ~-~l~~~i~ 178 (182)
T d1moza_ 171 D-WLIDVIK 178 (182)
T ss_dssp H-HHHHHHH
T ss_pred H-HHHHHHH
Confidence 4 4444443
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.1e-30 Score=193.20 Aligned_cols=161 Identities=19% Similarity=0.256 Sum_probs=130.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..+||+++|++|+|||||++++..+.|.. ...++.+ +....+...+ ..+.+|||||++.+...+..+++++++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~ 80 (171)
T d2ew1a1 3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 80 (171)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred CEEEEEEEECCCCcCHHHHHHHHHhCCCCC--cccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence 457899999999999999999999999887 4555554 4445555544 678899999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++++++....+++..+..... ...|+++|+||+|+.+. ...++..+..+. .+++|++|||++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~-------~~~~~~~~SAktg 152 (171)
T d2ew1a1 81 LILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAERREVSQQRAEEFSEA-------QDMYYLETSAKES 152 (171)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCSSCHHHHHHHHHH-------HTCCEEECCTTTC
T ss_pred EEEeeecccchhhhhhhhhhhhhccccc-ccccEEEEEeecccccccchhhhHHHHHHHh-------CCCEEEEEccCCC
Confidence 9999999999999999999988876532 57899999999998654 334444433321 2238999999999
Q ss_pred CccccchHHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~ 220 (224)
+||++.|...+.+++.+
T Consensus 153 ~gV~e~f~~l~~~l~~~ 169 (171)
T d2ew1a1 153 DNVEKLFLDLACRLISE 169 (171)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99988888888887765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.97 E-value=4.9e-30 Score=191.50 Aligned_cols=156 Identities=32% Similarity=0.565 Sum_probs=137.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+.+||+++|++++|||||++++..+.+.. ..+|.++...........+.+||+||++.++..+..+++.++++++|+
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~ 87 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 87 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCCEE---EEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCC---ccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEE
Confidence 46899999999999999999999887543 456778888888888999999999999999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+++.+++.....++............|+++++||+|+.+.....++.+.+.+.....+.+ .+++|||++|+|+++.|
T Consensus 88 D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~e~SA~tg~gv~e~~ 165 (173)
T d1e0sa_ 88 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW--YVQPSCATSGDGLYEGL 165 (173)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE--EEEECBTTTTBTHHHHH
T ss_pred ecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCC--EEEEeeCCCCcCHHHHH
Confidence 9999999999999999988876667899999999999998888888988888776666666 89999999999995444
Q ss_pred H
Q psy12173 211 V 211 (224)
Q Consensus 211 ~ 211 (224)
.
T Consensus 166 ~ 166 (173)
T d1e0sa_ 166 T 166 (173)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.3e-30 Score=192.45 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=112.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+||+++|++|+|||||++++.+..+.. . .++.+.. ...+..++ ..+.+||++|++++...+..+++++|++|+|
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~--~-~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv 78 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGP--E-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 78 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC------------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCC--c-CCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence 699999999999999999999887654 2 3333333 33455544 7899999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
||++++++++.+..|+..+........+|+++|+||+|+.+. ....+..+..+ .++++|++|||++|.|++
T Consensus 79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~Sak~~~~v~ 151 (168)
T d2gjsa1 79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-------VFDCKFIETSAALHHNVQ 151 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHH-------HHTSEEEECBTTTTBSHH
T ss_pred ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHH-------hcCCEEEEEeCCCCcCHH
Confidence 999999999999999999877655567899999999999764 33444433322 123489999999999997
Q ss_pred cchHHHHHHHHHH
Q psy12173 208 HVSVVEAEQAMYA 220 (224)
Q Consensus 208 ~~~~~~i~~~l~~ 220 (224)
+.|...+.++..+
T Consensus 152 ~~f~~l~~~i~~~ 164 (168)
T d2gjsa1 152 ALFEGVVRQIRLR 164 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665544
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.6e-31 Score=195.48 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=124.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++..+.|.. .+.||++........ ....+.+||++|++.+...+..+++++|+++
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~--~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 80 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 80 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----C--CEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCc--ccccceeccccccccccccccccccccccccccccceecchhcccccchh
Confidence 4799999999999999999999999888 777888866554433 3488999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
+|+|+++++|++++..|+..+.... .+.|+++|+||+|+......++...... ..+++|++|||++|.|++
T Consensus 81 lv~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~-------~~~~~~~e~Sak~~~~v~ 151 (170)
T d1i2ma_ 81 IMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHR-------KKNLQYYDISAKSNYNFE 151 (170)
T ss_dssp EEEETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSHHHHS-------SCSSEEEEEBTTTTBTTT
T ss_pred hccccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHHHHHH-------HcCCEEEEEeCCCCCCHH
Confidence 9999999999999999998887653 5899999999999977644333222221 123489999999999997
Q ss_pred cchHHHHHHHHH
Q psy12173 208 HVSVVEAEQAMY 219 (224)
Q Consensus 208 ~~~~~~i~~~l~ 219 (224)
+.|...+.+.+.
T Consensus 152 e~f~~l~~~l~~ 163 (170)
T d1i2ma_ 152 KPFLWLARKLIG 163 (170)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc
Confidence 777776666653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=5.4e-30 Score=190.58 Aligned_cols=159 Identities=16% Similarity=0.248 Sum_probs=125.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.+||+++|++|+|||||++++.++.|.. .+.++.+.... .+...+ ..+.+|||||++++..++..+++++|+
T Consensus 3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~ 80 (169)
T d3raba_ 3 DYMFKILIIGNSSVGKTSFLFRYADDSFTP--AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG 80 (169)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred CeEEEEEEECCCCcCHHHHHHHHHcCCCCc--ccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 457899999999999999999999999887 66666664433 344433 689999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|+++++++.....++....... ....|+++++||+|+.+. ...++..+..+. .+++|++|||++|
T Consensus 81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~-------~~~~~~e~Sak~g 152 (169)
T d3raba_ 81 FILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADH-------LGFEFFEASAKDN 152 (169)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC-CSCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEECBTTTT
T ss_pred EEEEEECccchhhhhhhhhhhhhhccc-CCcceEEEEEeecccccccccchhhhHHHHHH-------cCCEEEEecCCCC
Confidence 999999999999999988888776543 367899999999998764 344554443321 1238999999999
Q ss_pred CccccchHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAM 218 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l 218 (224)
.|+++.|...+...+
T Consensus 153 ~gv~e~f~~l~~~i~ 167 (169)
T d3raba_ 153 INVKQTFERLVDVIC 167 (169)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh
Confidence 999666666665543
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.1e-30 Score=191.49 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=127.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
|+.+||+++|++|+|||||++|+..+.|.. .+.+|.+..... +.. ....+.+||++|++.+...+..+++.+|++
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 78 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGF 78 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccccceeEEeeeeEEEeccccccCccccccccccccccccee
Confidence 457899999999999999999999999988 777777744433 233 347899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
|+|+|++++++++++..|+..+......++.|+++|+||+|+... ...++..+..+. ..+++|++|||++|.
T Consensus 79 ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~e~Sak~g~ 152 (167)
T d1c1ya_ 79 ALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ------WCNCAFLESSAKSKI 152 (167)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH------TTSCEEEECBTTTTB
T ss_pred EEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHH------hCCCEEEEEcCCCCc
Confidence 999999999999999999999887655568999999999999764 333333333211 112389999999999
Q ss_pred ccccchHHHHHH
Q psy12173 205 HHLHVSVVEAEQ 216 (224)
Q Consensus 205 gv~~~~~~~i~~ 216 (224)
||++.|...+++
T Consensus 153 gv~e~F~~l~~~ 164 (167)
T d1c1ya_ 153 NVNEIFYDLVRQ 164 (167)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 997776655544
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.9e-30 Score=192.13 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=127.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
.+.+||+++|++|+|||||++++..+.|.. .+.+|.. .....+..++ ..+.+||++|++++...+..+++++|++
T Consensus 4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 81 (173)
T d2fn4a1 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVS--DYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 81 (173)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCS--SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCeEEEEEECCCCcCHHHHHHHHHhCCCCc--ccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence 457899999999999999999999999887 6666654 3334455554 6888999999999998888899999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+. ...++.....+. .+++|++|||++|.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~e~Sak~g~ 154 (173)
T d2fn4a1 82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-------HHVAYFEASAKLRL 154 (173)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-------TTCEEEECBTTTTB
T ss_pred eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHh-------cCCEEEEEeCCCCc
Confidence 999999999999999999998877654468999999999998754 334444333321 12389999999999
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
||++.|...++.+..
T Consensus 155 gv~e~f~~l~~~i~k 169 (173)
T d2fn4a1 155 NVDEAFEQLVRAVRK 169 (173)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 996666655555433
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.2e-30 Score=193.47 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=125.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEe--CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQK--GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
....+||+++|++|+|||||++++..+.|.. .+.+|++..... +.. ....+.+||++|++.+...+..+++++|+
T Consensus 6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~--~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~ 83 (185)
T d2atxa1 6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPE--EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 83 (185)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCC--SCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHhhCCCCC--cCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence 3567899999999999999999999999887 777777644333 333 33789999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--------------HHHHHhhcCcccccCccc
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--------------AEEVGVALDLSSISSRQH 191 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~~~~~~ 191 (224)
+++|||+++++||++...++........ .+.|+++|+||+|+.+... .++..+..+ ...
T Consensus 84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~-~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~------~~~ 156 (185)
T d2atxa1 84 FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK------EIG 156 (185)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH------HHT
T ss_pred eeeccccchHHHHHHHHHHHHHHHHhcC-CCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHH------HcC
Confidence 9999999999999998888877776532 5799999999999976422 222221110 111
Q ss_pred ceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 192 RIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 192 ~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.++|++|||++|.||++.|..+++.+|
T Consensus 157 ~~~~~E~SAk~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 157 ACCYVECSALTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence 248999999999999777776666654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.96 E-value=4.8e-30 Score=190.75 Aligned_cols=159 Identities=20% Similarity=0.263 Sum_probs=126.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+.+||+++|++|+|||||++++..+.|.. .+.||.+..+. .+..++ ..+.+||++|++++...+..+++++|+++
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~--~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i 80 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVE--DYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCc--ccCCccccccccccccccccccccccccccccchhhhhhhcccccceeE
Confidence 45799999999999999999999999888 77788875543 344443 78889999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|++++++++.+..|+..+.......+.|+++|+||+|+.+. ...++..+..+ .++++|++|||++|.|
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~Sak~g~g 153 (168)
T d1u8za_ 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-------QWNVNYVETSAKTRAN 153 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-------HHTCEEEECCTTTCTT
T ss_pred EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHH-------HcCCeEEEEcCCCCcC
Confidence 99999999999999999999887655578999999999998654 34555544432 1234899999999999
Q ss_pred cccchHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAM 218 (224)
Q Consensus 206 v~~~~~~~i~~~l 218 (224)
+++.|...+++..
T Consensus 154 v~e~f~~l~~~i~ 166 (168)
T d1u8za_ 154 VDKVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9777776666543
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=6.9e-30 Score=190.06 Aligned_cols=160 Identities=17% Similarity=0.134 Sum_probs=130.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeE-EEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNI-TILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+.+||+++|++++|||||++++.++.|.. .+.+|.+..+ ..+..+ ...+.+||++|++.+...+..+++++|+++
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l 80 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVP--DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 80 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCT--TCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCc--ccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEE
Confidence 46899999999999999999999999887 6677776433 333443 478999999999999998888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC-
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL- 204 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~- 204 (224)
+|||+++++|+.++..|+..+.+.....+.|+++++||+|+.+. ...++..+..+. .+++|++|||++|.
T Consensus 81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~-------~~~~~~e~Sak~~~~ 153 (169)
T d1x1ra1 81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK-------YNIPYIETSAKDPPL 153 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH-------HTCCEEEEBCSSSCB
T ss_pred EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHH-------cCCEEEEEcCCCCCc
Confidence 99999999999999999999877655568999999999999775 445555554432 12389999999886
Q ss_pred ccccchHHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAMY 219 (224)
Q Consensus 205 gv~~~~~~~i~~~l~ 219 (224)
||++.|...++..++
T Consensus 154 nV~~~F~~l~~~i~~ 168 (169)
T d1x1ra1 154 NVDKTFHDLVRVIRQ 168 (169)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 997777777766554
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.4e-30 Score=190.67 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=122.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+.+||+++|++|+|||||++++..+.|.. .+.||.+..... ...+ ...+.+||++|+++++..+..+++++|++
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 79 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFND--KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 79 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS--SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCc--ccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCcee
Confidence 56899999999999999999999999988 777777754444 3333 48899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++|++.+..|+..+..... ...|+++++||+|+..+ ...++..+..+. .+++|++|||++|.
T Consensus 80 i~v~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~-------~~~~~~e~Sak~~~ 151 (167)
T d1z08a1 80 ILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEKERHVSIQEAESYAES-------VGAKHYHTSAKQNK 151 (167)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHG-GGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-------TTCEEEEEBTTTTB
T ss_pred EEEEeCCchhHHHhhhhhhhhcccccc-cccceeeeccccccccccccchHHHHHHHHH-------cCCeEEEEecCCCc
Confidence 999999999999999999887765432 57899999999998754 445555544322 22389999999999
Q ss_pred ccccchHHHHHHHH
Q psy12173 205 HHLHVSVVEAEQAM 218 (224)
Q Consensus 205 gv~~~~~~~i~~~l 218 (224)
||++.|...+.+.+
T Consensus 152 ~v~e~F~~l~~~i~ 165 (167)
T d1z08a1 152 GIEELFLDLCKRMI 165 (167)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99887777766654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.1e-30 Score=192.09 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=122.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEe--CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
.||+++|++|+|||||++++..+.|+. .+.||.+..... ... ....+.+||++|++.+...+..+++++|++|+|
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 80 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 80 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCC--CcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence 589999999999999999999999888 777887644332 333 346899999999999999999999999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccc--------cCcccceeEEEeecC
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSI--------SSRQHRIKLIATQAP 201 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~Sa~ 201 (224)
||+++++||++...++........ ++.|+++|+||+|+.+.....+.......... ......++|++|||+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAk 159 (177)
T d1kmqa_ 81 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 159 (177)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred cccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCC
Confidence 999999999999888888777543 57999999999999765222111111110000 001112389999999
Q ss_pred CCCccccchHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l 218 (224)
+|.||++.|...++.+|
T Consensus 160 t~~gi~e~F~~i~~~~l 176 (177)
T d1kmqa_ 160 TKDGVREVFEMATRAAL 176 (177)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999776665555544
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.8e-30 Score=190.40 Aligned_cols=158 Identities=18% Similarity=0.245 Sum_probs=126.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
|+.+||+++|++|+|||||++++.++.|.. .+.+|.+.... ....+ ...+.+||++|++.+...+..+++++|++
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ 78 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGF 78 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCC--ccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccce
Confidence 467899999999999999999999999888 67777774333 33344 37889999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|+++++++.+...|+..+.......+.|+++|+||+|+.+. ...++.....+ .++++|++|||++|.
T Consensus 79 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~e~Sak~g~ 151 (167)
T d1kaoa_ 79 ILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-------EWGCPFMETSAKSKT 151 (167)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-------HHTSCEEEECTTCHH
T ss_pred eeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHH-------HcCCeEEEECCCCCc
Confidence 999999999999999999999887665578999999999998654 33333333221 122389999999999
Q ss_pred ccccchHHHHHH
Q psy12173 205 HHLHVSVVEAEQ 216 (224)
Q Consensus 205 gv~~~~~~~i~~ 216 (224)
|+++.|...+++
T Consensus 152 ~i~e~f~~i~~~ 163 (167)
T d1kaoa_ 152 MVDELFAEIVRQ 163 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 997666655543
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=2.6e-30 Score=191.40 Aligned_cols=156 Identities=19% Similarity=0.321 Sum_probs=126.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++..+.|.. .+.+|.+..... .... ...+.+||++|++++......+++.+|+++
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~--~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 79 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTK--DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 79 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC--CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCc--ccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEE
Confidence 3799999999999999999999999888 677777754443 3333 378999999999999888888899999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|+|++++++++++..|+..+.... .++|+++|+||+|+.++ ...++..+..+ .++++|++|||++|.|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~Sak~g~~ 150 (164)
T d1z2aa1 80 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-------RLKLRFYRTSVKEDLN 150 (164)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-------HHTCEEEECBTTTTBS
T ss_pred EEEeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHH-------HcCCEEEEeccCCCcC
Confidence 9999999999999999998887653 47999999999998654 34444444332 1234899999999999
Q ss_pred cccchHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAM 218 (224)
Q Consensus 206 v~~~~~~~i~~~l 218 (224)
+++.|...+++++
T Consensus 151 v~e~f~~l~~~~l 163 (164)
T d1z2aa1 151 VSEVFKYLAEKHL 163 (164)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9887777777765
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-29 Score=187.85 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=128.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEE-Ee--CCeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL-QK--GEYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~-~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+.+||+++|+++||||||++++.++.|+. .+.++.+...... .. ....+.+||++|++.+...+..++..+++++
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i 79 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCC--ccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence 46899999999999999999999999888 7777777544332 22 3478999999999999999999999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
+|+|++++++++....|+..+.......++|+++|+||+|+... ...++..+..+. .+++|++|||++|+|+
T Consensus 80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~e~Sak~g~gi 152 (166)
T d1ctqa_ 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARS-------YGIPYIETSAKTRQGV 152 (166)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHH-------HTCCEEECCTTTCTTH
T ss_pred eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHH-------hCCeEEEEcCCCCcCH
Confidence 99999999999999999998877655567999999999999765 344444443321 2248999999999999
Q ss_pred ccchHHHHHHH
Q psy12173 207 LHVSVVEAEQA 217 (224)
Q Consensus 207 ~~~~~~~i~~~ 217 (224)
++.|...+.+.
T Consensus 153 ~e~f~~i~~~i 163 (166)
T d1ctqa_ 153 EDAFYTLVREI 163 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666554
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.1e-30 Score=190.29 Aligned_cols=158 Identities=25% Similarity=0.291 Sum_probs=129.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
+.+||+++|++|+|||||++++.++.|.. .+.||.+..+. .+..++ ..+.+||++|.+.+..++..++..+|+++
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i 80 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVD--SYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 80 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS--CCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCc--ccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence 46799999999999999999999999887 77788876543 345544 67889999999999888888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
+|||+++++++..+..|+..+.......+.|+++|+||+|+... .+.++..+..+ .++++|++|||++|.|
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~-------~~~~~~~e~Sak~~~~ 153 (167)
T d1xtqa1 81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-------SWNAAFLESSAKENQT 153 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-------HHTCEEEECCTTCHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHH-------HcCCEEEEEecCCCCC
Confidence 99999999999999999998877654467999999999999654 44555544432 2234899999999999
Q ss_pred cccchHHHHHHH
Q psy12173 206 HLHVSVVEAEQA 217 (224)
Q Consensus 206 v~~~~~~~i~~~ 217 (224)
|++.|...+.++
T Consensus 154 v~~~f~~li~~~ 165 (167)
T d1xtqa1 154 AVDVFRRIILEA 165 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 987777776655
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.5e-29 Score=185.57 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=124.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.+||+++|++|+|||||++++.++.|.. .+.++... .......++ ..+.+||++|++.+...+..+++++|+
T Consensus 2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~ 79 (166)
T d1z0fa1 2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 79 (166)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS--SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCC--cccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcE
Confidence 356899999999999999999999999888 55554443 334444444 689999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|+++.+++.....|+..+.... ....|+++++||.|+.+. ...++..+..+. .+++|++|||++|
T Consensus 80 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~e~Saktg 151 (166)
T d1z0fa1 80 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-------NGLLFLEASAKTG 151 (166)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTC
T ss_pred EEEEeccCchHHHHHHHHHHHHHHhhc-cccceEEEEcccccchhhcccHHHHHHHHHHH-------cCCEEEEEeCCCC
Confidence 999999999999999999988876653 267899999999998554 333444443321 1239999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.||++.|...+++
T Consensus 152 ~~v~e~f~~i~~~ 164 (166)
T d1z0fa1 152 ENVEDAFLEAAKK 164 (166)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9997777666554
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.5e-30 Score=193.48 Aligned_cols=161 Identities=18% Similarity=0.239 Sum_probs=126.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
|..+||+++|++|+|||||++++..+.|.. .+.||.+..... .... ...+.+||++|++++...+..+++++|++
T Consensus 1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 78 (191)
T d2ngra_ 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78 (191)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CCceEEEEECCCCcCHHHHHHHHHhCCCCC--CcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhccccccee
Confidence 356899999999999999999999999888 777888754433 3333 36899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCC--------------CHHHHHhhcCcccccCcccc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGAL--------------SAEEVGVALDLSSISSRQHR 192 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~ 192 (224)
++|||+++++||+++.+|+........ .+.|+++|+||+|+.+.. ..++..+... ...+
T Consensus 79 ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~ 151 (191)
T d2ngra_ 79 LVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR------DLKA 151 (191)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH------HTTC
T ss_pred ecccccchHHHHHHHHHHHHHHHhhcC-CCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHH------HcCC
Confidence 999999999999999888777766533 579999999999986541 1222211111 1122
Q ss_pred eeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 193 IKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 193 ~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++|++|||++|.||++.|..++..++.
T Consensus 152 ~~~~e~SAk~~~~V~e~f~~l~~~~~~ 178 (191)
T d2ngra_ 152 VKYVECSALTQKGLKNVFDEAILAALE 178 (191)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHTS
T ss_pred CeEEEEeCCCCcCHHHHHHHHHHHHhc
Confidence 489999999999997777766665554
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.8e-29 Score=188.37 Aligned_cols=163 Identities=21% Similarity=0.278 Sum_probs=127.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+.+||+++|++|+|||||++++.++.+.. .+.++.. ......... ...+.+||++|++.+...+..++..+|++
T Consensus 2 y~~KivvvG~~~vGKTsli~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ 79 (173)
T d2a5ja1 2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 79 (173)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred eeEEEEEECCCCcCHHHHHHHHhcCCCCC--CcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEE
Confidence 45799999999999999999999999887 4444433 333333343 47899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|++++++++....|+..+..... .++|+++|+||+|+... ...++.....+ ..+++|++|||++|.
T Consensus 80 ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~a~-------~~~~~~~e~Sa~tg~ 151 (173)
T d2a5ja1 80 LLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEGEAFAR-------EHGLIFMETSAKTAC 151 (173)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-------HHTCEEEEECTTTCT
T ss_pred EEEEeecChHHHHhHHHHHHHHHHhCC-CCCeEEEEecCCchhhhhhhHHHHHHHHHH-------HcCCEEEEecCCCCC
Confidence 999999999999999999988876543 67899999999998653 33444433332 122399999999999
Q ss_pred ccccchHHHHHHHHHHhhc
Q psy12173 205 HHLHVSVVEAEQAMYALSQ 223 (224)
Q Consensus 205 gv~~~~~~~i~~~l~~~~~ 223 (224)
||++.|...+.+.+.+..|
T Consensus 152 ~V~e~f~~i~~~i~~~~~~ 170 (173)
T d2a5ja1 152 NVEEAFINTAKEIYRKIQQ 170 (173)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 9988888888888777654
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.1e-29 Score=186.07 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=124.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF-NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.+||+++|++|||||||++++..+.|.. .+.||.+. ....+..++ ..+.+||++|.+++...+..+++.+|++++
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 5 KYRLVVVGGGGVGKSALTIQFIQSYFVT--DYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCS--SCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence 4799999999999999999999999887 67777763 333344444 689999999999999988888999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|.++++++..+..|+..+.........|+++|+||+|+.+. ...++..+..+. .+++|++|||++|.|+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~e~Sak~~~~i 155 (171)
T d2erya1 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQ-------LKVTYMEASAKIRMNV 155 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHH-------TTCEEEECBTTTTBSH
T ss_pred eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHH-------cCCEEEEEcCCCCcCH
Confidence 9999999999999999988877655567999999999999765 445555444422 2349999999999999
Q ss_pred ccchHHHHHHHHHHhh
Q psy12173 207 LHVSVVEAEQAMYALS 222 (224)
Q Consensus 207 ~~~~~~~i~~~l~~~~ 222 (224)
++.|...+ +.+.+..
T Consensus 156 ~e~f~~l~-~~i~k~~ 170 (171)
T d2erya1 156 DQAFHELV-RVIRKFQ 170 (171)
T ss_dssp HHHHHHHH-HHHHHHT
T ss_pred HHHHHHHH-HHHHHhh
Confidence 66665554 4455443
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=3.2e-29 Score=185.96 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=126.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe--C--CeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK--G--EYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.+||+++|++|+|||||++|+..+.|.. .+.+|.+........ + ...+.+||++|++++...+..+++.+|+
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 79 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDP--NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 79 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCc--ccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccc
Confidence 567899999999999999999999999988 777777765554333 3 3678899999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|+++++++..+..|+........ ...|+++|+||+|+.+. ...++..+..+. .+++|++|||++|
T Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~e~SAk~~ 151 (167)
T d1z0ja1 80 AIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDLTDVREVMERDAKDYADS-------IHAIFVETSAKNA 151 (167)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-------TTCEEEECBTTTT
T ss_pred eEEEeeechhhhhhhHHHhhhhhhhccC-CcceEEEecccchhccccchhHHHHHHHHHH-------cCCEEEEEecCCC
Confidence 9999999999999999999887766533 67899999999999754 445554443321 2349999999999
Q ss_pred CccccchHHHHH
Q psy12173 204 LHHLHVSVVEAE 215 (224)
Q Consensus 204 ~gv~~~~~~~i~ 215 (224)
.||++.|...++
T Consensus 152 ~nV~e~f~~l~~ 163 (167)
T d1z0ja1 152 ININELFIEISR 163 (167)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999766665444
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-29 Score=191.22 Aligned_cols=164 Identities=18% Similarity=0.244 Sum_probs=128.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeC------------CeEEEEEEcCCchhHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKG------------EYTLNIFELGGQENVRRF 115 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~------------~~~~~l~D~~G~~~~~~~ 115 (224)
+..+||+++|++|+|||||++++.++.|.. .+.++.+. ....+..+ ...+.+|||+|+++++.+
T Consensus 3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~ 80 (186)
T d2f7sa1 3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP--KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 80 (186)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCC--EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CEEEEEEEECCCCcCHHHHHHHHhcCCCCC--ccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH
Confidence 467899999999999999999999998877 44444432 23333221 267999999999999999
Q ss_pred HHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccce
Q psy12173 116 WNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRI 193 (224)
Q Consensus 116 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~ 193 (224)
+..+++++|++|+|+|++++++++.+..|+..+.........|+++|+||.|+.+. ...++..+..+ .+++
T Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~-------~~~~ 153 (186)
T d2f7sa1 81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-------KYGI 153 (186)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-------HTTC
T ss_pred HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHH-------HcCC
Confidence 99999999999999999999999999988888766655567899999999999654 44444443332 1234
Q ss_pred eEEEeecCCCCccccchHHHHHHHHHHhh
Q psy12173 194 KLIATQAPSNLHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 194 ~~~~~Sa~~~~gv~~~~~~~i~~~l~~~~ 222 (224)
+|++|||++|+|+++.|...+..++.+..
T Consensus 154 ~~~e~Sak~~~~i~e~f~~l~~~i~~k~~ 182 (186)
T d2f7sa1 154 PYFETSAATGQNVEKAVETLLDLIMKRME 182 (186)
T ss_dssp CEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999998777777777666544
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.7e-29 Score=186.22 Aligned_cols=162 Identities=19% Similarity=0.199 Sum_probs=129.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.+||+++|++|+|||||++++..+.|.. .+.+|.+........ ....+.+||+||++++...+..++..+|+
T Consensus 3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 80 (174)
T d2bmea1 3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD--DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 80 (174)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCc--ccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence 456899999999999999999999999887 667777655444332 33789999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|.++++++.++..++..+..... .++|+++|+||+|+... ...++..+... ..+++|++|||++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~-------~~~~~~~e~Sak~~ 152 (174)
T d2bmea1 81 ALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFAQ-------ENELMFLETSALTG 152 (174)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-------HTTCEEEECCTTTC
T ss_pred EEEEEecccchhHHHHhhhhcccccccC-CceEEEEEEecccccchhchhhhHHHHHHH-------hCCCEEEEeeCCCC
Confidence 9999999999999999999998877543 67999999999998654 22333322221 11238999999999
Q ss_pred CccccchHHHHHHHHHHh
Q psy12173 204 LHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~~ 221 (224)
+|+++.|...+.+++.++
T Consensus 153 ~gi~e~f~~l~~~i~~~~ 170 (174)
T d2bmea1 153 ENVEEAFVQCARKILNKI 170 (174)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999887777777776654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.7e-30 Score=190.66 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=123.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.+||+++|++|+|||||++++..+.|.. .+.||.+..... ...++ ..+.+||++|++.+...+..+++.+|++++
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~--~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 79 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRE--SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 79 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS--SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCC--ccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEE
Confidence 5799999999999999999999999887 777888855443 33344 678889999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
|||+++++++.++..|+..+.... ...++|+++|+||+|+.+. ...++..+..+ ..+++|++|||++|.|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~-------~~~~~~~e~Sak~~~~ 152 (171)
T d2erxa1 80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-------TWKCAFMETSAKLNHN 152 (171)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-------HHTCEEEECBTTTTBS
T ss_pred EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHH-------HcCCeEEEEcCCCCcC
Confidence 999999999999999988876532 3357899999999999654 34444444332 1234899999999999
Q ss_pred cccchHHHHH
Q psy12173 206 HLHVSVVEAE 215 (224)
Q Consensus 206 v~~~~~~~i~ 215 (224)
|++.|...+.
T Consensus 153 v~e~f~~l~~ 162 (171)
T d2erxa1 153 VKELFQELLN 162 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9776665544
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.3e-29 Score=185.26 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=122.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEE--eC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ--KG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
+||+++|++|+|||||++++.+++|.. .+.++.+....... .+ ...+.+||++|++.+...+..++..+|++++
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~il 78 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVV 78 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCC--ccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEE
Confidence 589999999999999999999999888 77777775555433 33 4789999999999999999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
|+|+++++++.++..|+..+..... .+.|+++|+||.|+.+. ...++..+..+. .+++|++|||++|+||
T Consensus 79 v~d~~~~~s~~~i~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~e~SAk~g~~v 150 (164)
T d1yzqa1 79 VYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAKE-------LNVMFIETSAKAGYNV 150 (164)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-------TTCEEEECCTTTCTTH
T ss_pred eeccccccchhhhHhhHHHHHHhcC-CCceEEEEecccchhhhhhhhHHHHHHHHHH-------cCCEEEEecCCCCcCH
Confidence 9999999999999999998876533 57899999999999653 334444333321 2248999999999999
Q ss_pred ccchHHH
Q psy12173 207 LHVSVVE 213 (224)
Q Consensus 207 ~~~~~~~ 213 (224)
++.|...
T Consensus 151 ~e~f~~i 157 (164)
T d1yzqa1 151 KQLFRRV 157 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.6e-29 Score=186.04 Aligned_cols=161 Identities=21% Similarity=0.278 Sum_probs=125.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.+||+++|++|+|||||++++.++.+.. .+.++.+ .....+..++ ..+.+||++|++.+...+..+++++|+
T Consensus 2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~ 79 (175)
T d2f9la1 2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG 79 (175)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred CEEEEEEEECCCCcCHHHHHHHHHhCCCCC--cccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCe
Confidence 356899999999999999999999999887 4444444 3444455554 688999999999999888888999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|.++++|+....+++..+..... .+.|+++|+||+|+.+. ...+....... ..++++++|||++|
T Consensus 80 ~i~v~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~e~Sa~~g 151 (175)
T d2f9la1 80 ALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFAE-------KNNLSFIETSALDS 151 (175)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-------HTTCEEEECCTTTC
T ss_pred EEEEEECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecccccccchHHHHHHhhc-------ccCceEEEEecCCC
Confidence 9999999999999999999988877643 67899999999999754 33332222221 12238999999999
Q ss_pred CccccchHHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~ 220 (224)
.|+++.|...+.+.+..
T Consensus 152 ~~i~e~f~~l~~~i~~~ 168 (175)
T d2f9la1 152 TNVEEAFKNILTEIYRI 168 (175)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99977777666665543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.9e-29 Score=185.76 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=124.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEE-EeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITIL-QKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
.+||+++|++|+|||||++++..+.|.. .+.||++..+... ..++ ..+.+||++|++.+. .+..+++++|++++
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~--~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~il 78 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIW--EYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVL 78 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCC--ccCCceeccccccccccccceEEEEeecccccccc-cchhhhccccccee
Confidence 4799999999999999999999999888 7888888664443 3333 789999999998875 34557889999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCCc-
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH- 205 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g- 205 (224)
|+|+++++++..+..|+..........+.|+++|+||+|+.+. ...++..+..+ .++++|++|||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~-------~~~~~~~e~Saktg~gn 151 (168)
T d2atva1 79 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-------ELACAFYECSACTGEGN 151 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-------HHTSEEEECCTTTCTTC
T ss_pred ecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHH-------HhCCeEEEEccccCCcC
Confidence 9999999999999887765554444468999999999999653 44555544432 1223899999999985
Q ss_pred cccchHHHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAMYA 220 (224)
Q Consensus 206 v~~~~~~~i~~~l~~ 220 (224)
|++.|...+.+...+
T Consensus 152 V~e~F~~l~~~i~~~ 166 (168)
T d2atva1 152 ITEIFYELCREVRRR 166 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 988887777665543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.4e-29 Score=190.66 Aligned_cols=167 Identities=14% Similarity=0.152 Sum_probs=125.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE-EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT-ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
+..+||+++|++|+|||||+++|..+.|.. .+.+|++.... .+..+ ...+.+||++|++.+...+..+++++|++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~--~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 80 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCc--ccccceeeceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence 467899999999999999999999999888 77788774433 34443 37789999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH-HHHHhhcCcccc-------cCcccceeEEEe
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA-EEVGVALDLSSI-------SSRQHRIKLIAT 198 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~ 198 (224)
++|+|++++++++++..++....... ..+.|+++|+||+|+.+.... ++.......... .+....++|++|
T Consensus 81 ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~ 159 (183)
T d1mh1a_ 81 LICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (183)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred eeeeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEc
Confidence 99999999999999887777666543 257899999999998655221 111111110000 001122589999
Q ss_pred ecCCCCccccchHHHHHHHHH
Q psy12173 199 QAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 199 Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
||++|.||++.|...++.+|.
T Consensus 160 SAk~~~~V~e~F~~l~~~il~ 180 (183)
T d1mh1a_ 160 SALTQRGLKTVFDEAIRAVLC 180 (183)
T ss_dssp CTTTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCcCHHHHHHHHHHHHcC
Confidence 999999997777766666553
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.3e-29 Score=185.81 Aligned_cols=155 Identities=19% Similarity=0.265 Sum_probs=125.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEE--eC--CeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ--KG--EYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..+||+++|++|+|||||++++..+.|.. .+.+|.+....... .. ...+.+||++|++.+...+..+++++|++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 82 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE--FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCc--ccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceE
Confidence 46799999999999999999999999888 77777776655433 33 37899999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
++|+|.++.+++.....|+..+..... .+.|+++|+||+|+.+. .+.++..+..+ .++++|++|||++|+
T Consensus 83 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~-------~~~~~~~e~SAk~g~ 154 (170)
T d1r2qa_ 83 IVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYAD-------DNSLLFMETSAKTSM 154 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-------HTTCEEEECCTTTCT
T ss_pred EEEeccchhhHHHHHHHHhhhhhhccC-CCceEEeecccccccccccccHHHHHHHHH-------hcCCEEEEeeCCCCC
Confidence 999999999999999999988876533 67999999999998654 34444444332 123499999999999
Q ss_pred ccccchHHHHH
Q psy12173 205 HHLHVSVVEAE 215 (224)
Q Consensus 205 gv~~~~~~~i~ 215 (224)
||++.|...+.
T Consensus 155 ~V~e~f~~l~~ 165 (170)
T d1r2qa_ 155 NVNEIFMAIAK 165 (170)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99666555444
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.4e-28 Score=186.83 Aligned_cols=161 Identities=21% Similarity=0.269 Sum_probs=127.6
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
.+..+||+++|+++||||||++++..+.+.. .+.+|.+.... .+... ...+.+|||||++++..++..+++.+|
T Consensus 3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~ 80 (194)
T d2bcgy1 3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTN--DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH 80 (194)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCT--TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred CCEEEEEEEECCCCcCHHHHHHHHhhCCCCC--CcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 3567899999999999999999999999888 66677664443 44443 478999999999999998999999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++|+|+|.++++++.....++..+.... ..+.|+++|+||+|+.+. ...++....... .+++|++|||++
T Consensus 81 ~~i~v~d~t~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~e~SAk~ 152 (194)
T d2bcgy1 81 GIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-------NKMPFLETSALD 152 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-------TTCCEEECCTTT
T ss_pred EEEEEEeCcchhhhhhHhhhhhhhhhcc-cCCceEEEEEeccccccccchhHHHHhhhhhc-------cCcceEEEecCc
Confidence 9999999999999999988888876543 367899999999999874 334433333321 123899999999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+++.|...+.+...
T Consensus 153 g~gi~e~f~~l~~~i~~ 169 (194)
T d2bcgy1 153 STNVEDAFLTMARQIKE 169 (194)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH
Confidence 99997777666555444
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.5e-28 Score=183.47 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=112.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-----CCeEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-----GEYTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
.+||+++|++|+|||||++++.+++|.. .+.++.+........ ....+.+||++|++++...+..+++.++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 79 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQ--QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 79 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCT--TC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCC--ccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceE
Confidence 5799999999999999999999999887 556665543333222 236789999999999999999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhc---CCCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGD---QRLSTVPILVIANKQDVPGA---LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
++|+|++++.++.....|+..+... ....++|+++++||+|+.+. ...++..+..+ ....++|++|||
T Consensus 80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~------~~~~~~~~e~SA 153 (175)
T d1ky3a_ 80 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK------SLGDIPLFLTSA 153 (175)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH------HTTSCCEEEEBT
T ss_pred EEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHH------HcCCCeEEEEeC
Confidence 9999999999999999888887653 22357899999999999754 33333333221 111238999999
Q ss_pred CCCCccccchHHHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~~ 220 (224)
++|.|+++.|...++.++.+
T Consensus 154 ~~g~gv~e~f~~l~~~~l~~ 173 (175)
T d1ky3a_ 154 KNAINVDTAFEEIARSALQQ 173 (175)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhc
Confidence 99999977677666666553
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3e-28 Score=182.34 Aligned_cols=160 Identities=19% Similarity=0.206 Sum_probs=127.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce--eEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF--NITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
..+||+++|++|+|||||++++.++.|.. .+.++.+. ....+..++ ..+.+|||||++++...+..++.++|++
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i 83 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDP--ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 83 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCC--ccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 46899999999999999999999999887 55555544 344455543 6899999999999999888999999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCc
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLH 205 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 205 (224)
++|+|+++++++.....|+..+.........|+++++||.|.... ...++..+..+. ++++|++|||++|+|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~-------~~~~~~e~Sa~tg~g 156 (177)
T d1x3sa1 84 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-------HSMLFIEASAKTCDG 156 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-------TTCEEEECCTTTCTT
T ss_pred EEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHH-------CCCEEEEEeCCCCCC
Confidence 999999999999999999999877665567899999999998764 444444443321 223899999999999
Q ss_pred cccchHHHHHHHHH
Q psy12173 206 HLHVSVVEAEQAMY 219 (224)
Q Consensus 206 v~~~~~~~i~~~l~ 219 (224)
+++.|...+.+++.
T Consensus 157 v~e~f~~l~~~l~~ 170 (177)
T d1x3sa1 157 VQCAFEELVEKIIQ 170 (177)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcc
Confidence 96666655555543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1e-28 Score=184.31 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=99.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
++.+||+++|+++||||||++++.++.+.. .+.+|.+ +....+..++ ..+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~ 81 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS--TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 81 (173)
T ss_dssp SEEEEEEEECCCCC------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCC--ccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence 466899999999999999999999988777 5556655 3444555544 678899999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|+|++++.++..+..++..+.... ..+.|+++|+||.|+... ...++...... ..+++|++|||++|
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~-------~~~~~~~e~Sa~~g 153 (173)
T d2fu5c1 82 IMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL-------DYGIKFMETSAKAN 153 (173)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-------HHTCEEEECCC---
T ss_pred EEEEEECCChhhHHHHHHHHHHhhhhc-cCCceEEEEEecccchhhcccHHHHHHHHHH-------hcCCEEEEEeCCCC
Confidence 999999999999999999988886543 367999999999999764 22333333221 12349999999999
Q ss_pred CccccchHHHHHHHHHHh
Q psy12173 204 LHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~~ 221 (224)
+|+++.|...+.+...+.
T Consensus 154 ~gv~e~f~~l~~~i~~k~ 171 (173)
T d2fu5c1 154 INVENAFFTLARDIKAKM 171 (173)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999888777777665544
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.5e-27 Score=177.94 Aligned_cols=162 Identities=18% Similarity=0.231 Sum_probs=124.7
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE--EEEeC--CeEEEEEEcCCchhHHHHHHhhccCCC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--ILQKG--EYTLNIFELGGQENVRRFWNTYFEDTD 124 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d 124 (224)
++..+||+++|+++||||||++++..+.|.. .+.+|.+.... ..... ...+.+||++|..+....+..++..++
T Consensus 3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 80 (174)
T d1wmsa_ 3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD 80 (174)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCC--ccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccc
Confidence 3567899999999999999999999999887 66676664433 33333 378899999999999999999999999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhc---CCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGD---QRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
++++++|.+++.++.....|+..+... ....+.|+++|+||+|+.+. ...++..+.... ...++|++|||
T Consensus 81 ~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~------~~~~~~~e~Sa 154 (174)
T d1wmsa_ 81 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD------NGDYPYFETSA 154 (174)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH------TTCCCEEECCT
T ss_pred eEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHH------cCCCeEEEEcC
Confidence 999999999999999988888766543 33357899999999999764 455555444321 11238999999
Q ss_pred CCCCccccchHHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l 218 (224)
++|+||++.|...+++++
T Consensus 155 k~~~gI~e~f~~l~~~il 172 (174)
T d1wmsa_ 155 KDATNVAAAFEEAVRRVL 172 (174)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999777776666654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=2.3e-28 Score=183.43 Aligned_cols=159 Identities=15% Similarity=0.184 Sum_probs=123.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-eEEEEEeC--CeEEEEEEcCCchhHHHHHHhhccCCCEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF-NITILQKG--EYTLNIFELGGQENVRRFWNTYFEDTDLLVF 128 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~-~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~ 128 (224)
..||+++|++|+|||||++++..+.|+. .+.||.+. ....+..+ ...+.+||++|++.+...+..+++++|++++
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~il 79 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 79 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCC--ccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhhe
Confidence 3689999999999999999999999988 77787763 33334433 3788999999999999988889999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--------------CCHHHHHhhcCcccccCccccee
Q psy12173 129 VVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--------------LSAEEVGVALDLSSISSRQHRIK 194 (224)
Q Consensus 129 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 194 (224)
|||+++++||+....++........ .+.|+++|+||+|+... ...++..+..+ ....+.
T Consensus 80 v~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~------~~~~~~ 152 (179)
T d1m7ba_ 80 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK------QIGAAT 152 (179)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH------HHTCSE
T ss_pred eeecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHH------HhCCCe
Confidence 9999999999999888877765533 58999999999998643 22333332221 111248
Q ss_pred EEEeecCCCCc-cccchHHHHHHHHH
Q psy12173 195 LIATQAPSNLH-HLHVSVVEAEQAMY 219 (224)
Q Consensus 195 ~~~~Sa~~~~g-v~~~~~~~i~~~l~ 219 (224)
|++|||++|+| +++.|..++..++.
T Consensus 153 y~E~SAk~~~n~i~~~F~~~~~~~l~ 178 (179)
T d1m7ba_ 153 YIECSALQSENSVRDIFHVATLACVN 178 (179)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence 99999999985 86666666665553
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=9.6e-29 Score=183.84 Aligned_cols=155 Identities=21% Similarity=0.274 Sum_probs=124.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++..+.|.. .+.+|.+.. ...+...+ ..+.+||++|++.+...+..++..+|+++
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~--~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i 80 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE--NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAAL 80 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT--TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCc--cccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEE
Confidence 5799999999999999999999999888 677777754 34455544 78999999999999988888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-----CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-----LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+|||.++++++.+...|+........ ...|+++++||+|+.+. ...++..+..+. .+++|++|||++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~-------~~~~~~e~Sak~ 152 (170)
T d1ek0a_ 81 VVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQEGGERKVAREEGEKLAEE-------KGLLFFETSAKT 152 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-------HTCEEEECCTTT
T ss_pred EEEeCCcccchhhhhhhhhhhccccc-cccceeeeecccccccccchhhhhHHHHHHHHHH-------cCCEEEEecCCC
Confidence 99999999999999999887766533 57899999999998543 344444443321 224999999999
Q ss_pred CCccccchHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQ 216 (224)
Q Consensus 203 ~~gv~~~~~~~i~~ 216 (224)
|.||++.|...+++
T Consensus 153 g~gV~e~F~~i~~~ 166 (170)
T d1ek0a_ 153 GENVNDVFLGIGEK 166 (170)
T ss_dssp CTTHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHH
Confidence 99997777655443
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=3.9e-28 Score=182.81 Aligned_cols=163 Identities=20% Similarity=0.260 Sum_probs=129.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe----CCeEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK----GEYTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|||||||++++.++.|.. .+.+|.+........ ....+.+||++|+......+..++..+|+++
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 79 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 79 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCC--CcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEE
Confidence 3699999999999999999999999888 777888765554433 3478999999999998888888899999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcC---CCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQ---RLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+|+|.+++.++..+..|+..+.... ...++|+++|+||+|+.+. ...++..+... ...+++|++|||++|
T Consensus 80 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Sak~~ 153 (184)
T d1vg8a_ 80 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY------SKNNIPYFETSAKEA 153 (184)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH------HTTSCCEEECBTTTT
T ss_pred EeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH------HhcCCeEEEEcCCCC
Confidence 9999999999999988887776542 2246899999999999765 33333333321 112348999999999
Q ss_pred CccccchHHHHHHHHHHhh
Q psy12173 204 LHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~~~~ 222 (224)
.|+++.|...++.++.+..
T Consensus 154 ~gI~e~f~~l~~~i~~~~~ 172 (184)
T d1vg8a_ 154 INVEQAFQTIARNALKQET 172 (184)
T ss_dssp BSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccc
Confidence 9998888777777776543
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.7e-27 Score=177.08 Aligned_cols=158 Identities=18% Similarity=0.276 Sum_probs=116.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE--EEeCC--eEEEEEEcCCchhHHHHHHhhccCCCE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI--LQKGE--YTLNIFELGGQENVRRFWNTYFEDTDL 125 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ 125 (224)
+..+||+++|++++|||||++++..+.|... ...++++..... +..++ ..+.+|||+|++.+...+..+++++|+
T Consensus 4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~ 82 (170)
T d2g6ba1 4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 82 (170)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred ceEEEEEEECCCCcCHHHHHHHHHhCCCCcc-cccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence 4678999999999999999999999887541 334455555444 44444 688999999999999999999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
+++|+|.++++++.....++........ ...|+++++||.|+.+. ...++..+..+ .++++|++|||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~~~~-------~~~~~~~e~Sak~g 154 (170)
T d2g6ba1 83 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-------EYGLPFMETSAKTG 154 (170)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-------HHTCCEEECCTTTC
T ss_pred eEEEecCCcccchhhhhhhhhhhhhccC-CCceEEEEEeeechhhcccccHHHHHHHHH-------HcCCEEEEEeCCCC
Confidence 9999999999999999999988776643 57899999999999775 34444444432 12349999999999
Q ss_pred CccccchHHHHHH
Q psy12173 204 LHHLHVSVVEAEQ 216 (224)
Q Consensus 204 ~gv~~~~~~~i~~ 216 (224)
.|+++.|...+.+
T Consensus 155 ~gi~e~f~~l~~~ 167 (170)
T d2g6ba1 155 LNVDLAFTAIAKE 167 (170)
T ss_dssp TTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9996665555544
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.95 E-value=1.4e-26 Score=169.56 Aligned_cols=154 Identities=34% Similarity=0.585 Sum_probs=129.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEEC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDS 132 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 132 (224)
+||+++|++|||||||++++.++++.. .. ++..............+.+||++|...+...+..++..++++++++|.
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~ 77 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CC-CCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc--cc-cceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEe
Confidence 589999999999999999999988765 22 333344555667889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccchH
Q psy12173 133 ADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSV 211 (224)
Q Consensus 133 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 211 (224)
.++.++.....++..+.........|+++++||.|+.+....+++.........+...+ ++++|||++|+|+++.|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~SAktg~gi~e~~~ 154 (160)
T d1r8sa_ 78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW--YIQATCATSGDGLYEGLD 154 (160)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCE--EEEECBTTTTBTHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCC--EEEEeECCCCCCHHHHHH
Confidence 99999999999999998876667899999999999998877888777766555544444 999999999999955444
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.7e-27 Score=175.62 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=117.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc--eeEEEEEeCC--eEEEEEEcCC---chhHHHHHHhhccCCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG--FNITILQKGE--YTLNIFELGG---QENVRRFWNTYFEDTD 124 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~D~~G---~~~~~~~~~~~~~~~d 124 (224)
.+||+++|++|+|||||++++.+..+..... .++++ +....+..++ ..+.+||+++ ++++ ....+++++|
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~ 79 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD 79 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCcccc-ccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence 4799999999999999999999887654222 23443 3344455544 6678899775 4444 4566789999
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 125 LLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
++|+|||+++++++.++..|+..+.......++|+++|+||+|+.+. ...++..+..+. .+++|++|||++
T Consensus 80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~-------~~~~~~e~Sak~ 152 (172)
T d2g3ya1 80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVV-------FDCKFIETSAAV 152 (172)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHH-------HTCEEEECBTTT
T ss_pred eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHH-------cCCeEEEEeCCC
Confidence 99999999999999999999998877655568999999999998764 444444333221 124999999999
Q ss_pred CCccccchHHHHHHHHH
Q psy12173 203 NLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 203 ~~gv~~~~~~~i~~~l~ 219 (224)
|.|+++.|...+.++..
T Consensus 153 g~~i~~~f~~l~~~i~~ 169 (172)
T d2g3ya1 153 QHNVKELFEGIVRQVRL 169 (172)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99997777766666544
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=9.2e-28 Score=177.78 Aligned_cols=159 Identities=19% Similarity=0.268 Sum_probs=120.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLLV 127 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~ii 127 (224)
.+||+++|++|+|||||++++..+.+.. .+.+|.+.. ...+..++ ..+.+|||||++.+..++..+++++|+++
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 79 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCC--ccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4799999999999999999999999888 666666544 44455444 67888999999999998888999999999
Q ss_pred EEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-CCHHHHHhhcCcccccCcccceeEEEeecCCCCcc
Q psy12173 128 FVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-LSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHH 206 (224)
Q Consensus 128 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 206 (224)
+|+|.+++++++....++........ ...|+++++||.|+... ...++..+... .+++++++|||++|+|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~i~~~~k~d~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v 151 (166)
T d1g16a_ 80 LVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAK-------ELGIPFIESSAKNDDNV 151 (166)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTCCSCHHHHHHHHH-------HHTCCEEECBTTTTBSH
T ss_pred EEEECCCccCHHHHHhhhhhhhcccc-CcceeeeecchhhhhhhhhhHHHHHHHHH-------hcCCeEEEECCCCCCCH
Confidence 99999999999988888777766543 56889999999999775 33444433332 12239999999999999
Q ss_pred ccchHHHHHHHHHH
Q psy12173 207 LHVSVVEAEQAMYA 220 (224)
Q Consensus 207 ~~~~~~~i~~~l~~ 220 (224)
++.|...+..+..+
T Consensus 152 ~e~f~~l~~~i~~k 165 (166)
T d1g16a_ 152 NEIFFTLAKLIQEK 165 (166)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 77777666655443
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=6.2e-27 Score=172.98 Aligned_cols=151 Identities=20% Similarity=0.316 Sum_probs=118.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee--EEEEEe--CCeEEEEEEcCCchhHHH-HHHhhccCCCEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN--ITILQK--GEYTLNIFELGGQENVRR-FWNTYFEDTDLL 126 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~i 126 (224)
.+||+++|++|+|||||++++..+.|.. .+.++.+.. ...... ....+.+||++|...... .+..+++++|++
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 79 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPD--RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 79 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCS--SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCC--ccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCce
Confidence 5799999999999999999999999888 555555533 333333 457899999999888765 466788999999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
|+|||++++++++++..|+..+.......+.|+++|+||.|+.++ ...++..+..+ .++++|++|||++|.
T Consensus 80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~-------~~~~~~~e~SAkt~~ 152 (165)
T d1z06a1 80 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-------THSMPLFETSAKNPN 152 (165)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-------HTTCCEEECCSSSGG
T ss_pred EEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHH-------HCCCEEEEEecccCC
Confidence 999999999999999999999887765578999999999999764 45555544432 123489999999855
Q ss_pred ---ccccchH
Q psy12173 205 ---HHLHVSV 211 (224)
Q Consensus 205 ---gv~~~~~ 211 (224)
||++.|.
T Consensus 153 ~~~~V~e~F~ 162 (165)
T d1z06a1 153 DNDHVEAIFM 162 (165)
T ss_dssp GGSCHHHHHH
T ss_pred cCcCHHHHHH
Confidence 6644443
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.2e-26 Score=171.87 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=118.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCc-eeEEEEEeCC--eEEEEEEcCCchhHHHHHHhhccCCCEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEG-FNITILQKGE--YTLNIFELGGQENVRRFWNTYFEDTDLL 126 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~i 126 (224)
.+.+||+++|++++|||||++++.++.|.. . .++.. .....+..++ ..+.+|||+|++++. +++++|++
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~--~-~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ 74 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV--L-EKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAV 74 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCCCC--C-CCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCC--c-CCccceeEEEEeecCceEEEEEEeecccccccc-----ccccccee
Confidence 356899999999999999999999999765 3 33443 3333455555 779999999998765 57789999
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhc--CCCCCCcEEEEEeCCCCCCC----CCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 127 VFVVDSADPSKLPVAAMELKNLLGD--QRLSTVPILVIANKQDVPGA----LSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 127 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
|+|||+++++||+++..|+..+... ......|+++|+||.|+... ...++..+... ..++++|++|||
T Consensus 75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~------~~~~~~~~e~SA 148 (175)
T d2bmja1 75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA------DMKRCSYYETCA 148 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH------TSTTEEEEEEBT
T ss_pred EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH------HhCCCeEEEeCC
Confidence 9999999999999998888776543 23356799999999887442 33444444321 112348999999
Q ss_pred CCCCccccchHHHHHHHHHHh
Q psy12173 201 PSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~l~~~ 221 (224)
++|.|+++.|...+.+++...
T Consensus 149 k~~~~v~~~F~~l~~~i~~~~ 169 (175)
T d2bmja1 149 TYGLNVDRVFQEVAQKVVTLR 169 (175)
T ss_dssp TTTBTHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHhh
Confidence 999999888888887776643
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.94 E-value=1e-25 Score=167.96 Aligned_cols=161 Identities=31% Similarity=0.492 Sum_probs=130.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+.+||+++|.+|||||||++++.++++.. ..++.+.........+..+.+||++|.+..+..+..++..++++++|+
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~ 90 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVH---TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 90 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEE---EECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCc---cccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeec
Confidence 35799999999999999999999988654 345556667777788899999999999998888888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|.++.+++.....++............|+++|+||.|+......+++.+.+.......+.+ +|++|||++|+|+ ++.
T Consensus 91 d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~Sa~tg~Gi-~e~ 167 (177)
T d1zj6a1 91 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW--HIQACCALTGEGL-CQG 167 (177)
T ss_dssp ETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE--EEEECBTTTTBTH-HHH
T ss_pred ccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCC--EEEEEeCCCCCCH-HHH
Confidence 9999999998877777776665557899999999999988888888888887665555554 9999999999999 444
Q ss_pred HHHHHHH
Q psy12173 211 VVEAEQA 217 (224)
Q Consensus 211 ~~~i~~~ 217 (224)
.+.+.+.
T Consensus 168 ~~~L~~~ 174 (177)
T d1zj6a1 168 LEWMMSR 174 (177)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.92 E-value=6.2e-24 Score=156.37 Aligned_cols=162 Identities=28% Similarity=0.544 Sum_probs=134.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+.+||+++|++|||||||++++.++.+.. ..++.+........++..+.+||.+|.+.............+++++++
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVT---TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 80 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcc---eecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhh
Confidence 35899999999999999999999998754 356777777777888999999999999999998888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCccccch
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVS 210 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 210 (224)
|+.+..++.....++............|+++++||.|+.+.....++.+.+.......+.+ +|++|||++|.|+++.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~--~~~~~SA~~g~gv~e~~ 158 (169)
T d1upta_ 81 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW--QIFKTSATKGTGLDEAM 158 (169)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE--EEEECCTTTCTTHHHHH
T ss_pred hhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCC--EEEEEeCCCCCCHHHHH
Confidence 9999999998888877777665556789999999999998877777777665444444444 99999999999995554
Q ss_pred HHHHHHHH
Q psy12173 211 VVEAEQAM 218 (224)
Q Consensus 211 ~~~i~~~l 218 (224)
. .+.+.+
T Consensus 159 ~-~l~~~l 165 (169)
T d1upta_ 159 E-WLVETL 165 (169)
T ss_dssp H-HHHHHH
T ss_pred H-HHHHHH
Confidence 4 444443
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=5.1e-24 Score=155.99 Aligned_cols=155 Identities=33% Similarity=0.551 Sum_probs=132.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSA 133 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 133 (224)
||+++|++|+|||||++++.++++. .+.||.+.........+....+||++|...+......++..++++++++|.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA 78 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC---CCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---eeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecccc
Confidence 7999999999999999999998865 4578888888888888899999999999999888888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC-----cccceeEEEeecCCCCcccc
Q psy12173 134 DPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS-----RQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 134 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+..++.....++..........+.|+++++||.|+.......++.+.+....... ....+++++|||++|+|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e 158 (166)
T d2qtvb1 79 DPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE 158 (166)
T ss_dssp CGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHH
T ss_pred chhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHH
Confidence 9999999888888888777777899999999999998888888877775543321 22234899999999999955
Q ss_pred chH
Q psy12173 209 VSV 211 (224)
Q Consensus 209 ~~~ 211 (224)
.|.
T Consensus 159 ~~~ 161 (166)
T d2qtvb1 159 AFQ 161 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=2.2e-23 Score=155.61 Aligned_cols=155 Identities=20% Similarity=0.160 Sum_probs=106.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCch--------hHHHHHHhhcc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQE--------NVRRFWNTYFE 121 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~ 121 (224)
+.-+|+++|.+|+|||||+++|++.+....+... .|...........+..+.+|||||.. .+.......++
T Consensus 4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 83 (178)
T d1wf3a1 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 83 (178)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence 4458999999999999999999988743322333 34445566677788999999999963 23334455688
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecC
Q psy12173 122 DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAP 201 (224)
Q Consensus 122 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 201 (224)
.+|++++|+|++++.. ....++...++... .++|+++|+||+|+... .++..+.+.. ......++++||+
T Consensus 84 ~ad~il~v~D~~~~~~--~~~~~i~~~l~~~~-~~~piilv~NK~Dl~~~--~~~~~~~~~~-----~~~~~~~~~iSA~ 153 (178)
T d1wf3a1 84 DVNAVVWVVDLRHPPT--PEDELVARALKPLV-GKVPILLVGNKLDAAKY--PEEAMKAYHE-----LLPEAEPRMLSAL 153 (178)
T ss_dssp SCSEEEEEEETTSCCC--HHHHHHHHHHGGGT-TTSCEEEEEECGGGCSS--HHHHHHHHHH-----TSTTSEEEECCTT
T ss_pred cccceeeeechhhhhc--ccccchhhheeccc-cchhhhhhhcccccccC--HHHHHHHHHh-----hcccCceEEEecC
Confidence 9999999999998744 33455555554322 46899999999999764 2222222211 0111278899999
Q ss_pred CCCccccchHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQ 216 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~ 216 (224)
+|.|+ +++.+.+.+
T Consensus 154 ~~~gi-~~L~~~i~~ 167 (178)
T d1wf3a1 154 DERQV-AELKADLLA 167 (178)
T ss_dssp CHHHH-HHHHHHHHT
T ss_pred CCCCH-HHHHHHHHH
Confidence 99999 555555544
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.89 E-value=9.2e-23 Score=152.26 Aligned_cols=158 Identities=28% Similarity=0.435 Sum_probs=122.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
+..||+++|++|+|||||+++|.++.+.. ..++.+.+...+..++..+..||++++..+...+.......+++++++
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 88 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc---eecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeee
Confidence 46799999999999999999999988654 346777777778888899999999999998888888899999999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccC----------cccceeEEEeec
Q psy12173 131 DSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISS----------RQHRIKLIATQA 200 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa 200 (224)
|.++...+......+..........+.|+++++||.|+.......++.+.++...... ....+++++|||
T Consensus 89 d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 168 (186)
T d1f6ba_ 89 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 168 (186)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred eccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeC
Confidence 9999988888887777777665557899999999999998888888777665543221 112348999999
Q ss_pred CCCCccccchH
Q psy12173 201 PSNLHHLHVSV 211 (224)
Q Consensus 201 ~~~~gv~~~~~ 211 (224)
++|+|++|.|.
T Consensus 169 ~tg~Gi~e~~~ 179 (186)
T d1f6ba_ 169 LKRQGYGEGFR 179 (186)
T ss_dssp TTTBSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 99999955444
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2e-22 Score=147.71 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=106.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCchh--------HHHHHHhhccCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQEN--------VRRFWNTYFEDT 123 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~~ 123 (224)
+||+++|++|+|||||+++|++.+........ .+.......+...+..+.++|+||... .......++..+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 81 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence 68999999999999999999987754322222 333345556777889999999999432 112234557899
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|++++++|..+..+......+...+.... .+.|+++|+||+|+..+... .......+++++||++|
T Consensus 82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv~NK~Dl~~~~~~------------~~~~~~~~~~~iSAk~~ 147 (161)
T d2gj8a1 82 DRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETLG------------MSEVNGHALIRLSARTG 147 (161)
T ss_dssp SEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCCE------------EEEETTEEEEECCTTTC
T ss_pred cccceeeccccccchhhhhhhhhhhhhcc--cccceeeccchhhhhhhHHH------------HHHhCCCcEEEEECCCC
Confidence 99999999999988776665444443332 47899999999998553110 01122348999999999
Q ss_pred CccccchHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQA 217 (224)
Q Consensus 204 ~gv~~~~~~~i~~~ 217 (224)
.|+ +++.+.+.+.
T Consensus 148 ~gi-~~L~~~l~~~ 160 (161)
T d2gj8a1 148 EGV-DVLRNHLKQS 160 (161)
T ss_dssp TTH-HHHHHHHHHH
T ss_pred CCH-HHHHHHHHhh
Confidence 999 5565555543
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=2.9e-23 Score=157.10 Aligned_cols=161 Identities=23% Similarity=0.312 Sum_probs=123.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.+||+++|+.|||||||++|+..+.|. +.||+|+....+......+.+||++|++.++..+..+++.++++++|+|
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~~----~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~ 77 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHGS----GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVA 77 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTSS----CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCC----CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeee
Confidence 579999999999999999999988763 4689999999999999999999999999999999999999999999999
Q ss_pred CCCCCC----------HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC------------------CCHHHHHh----
Q psy12173 132 SADPSK----------LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA------------------LSAEEVGV---- 179 (224)
Q Consensus 132 ~~~~~s----------~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------------~~~~~~~~---- 179 (224)
.++.++ +.+....|..++......+.|+++++||.|+... .+.+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (200)
T d2bcjq2 78 LSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILK 157 (200)
T ss_dssp GGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHH
T ss_pred ccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHH
Confidence 987543 4555667777777666678999999999997431 11111111
Q ss_pred -hcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 180 -ALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 180 -~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
..+......+. +.+++|||++|.||++.|. .+.+.+.
T Consensus 158 ~f~~~~~~~~~~--~~~~~tSAk~~~ni~~vF~-~i~~~I~ 195 (200)
T d2bcjq2 158 MFVDLNPDSDKI--IYSHFTCATDTENIRFVFA-AVKDTIL 195 (200)
T ss_dssp HHHTTCSCTTSC--EEEEECCTTCHHHHHHHHH-HHHHHHH
T ss_pred HHHHhcccCCCc--eEEEEeEEEcCHhHHHHHH-HHHHHHH
Confidence 11111112233 3788999999999966664 4555554
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.88 E-value=1.1e-22 Score=151.99 Aligned_cols=165 Identities=16% Similarity=0.214 Sum_probs=108.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-------CCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-------PTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFED 122 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 122 (224)
++.++|+++|.+++|||||+|+|++.......... .+.......+...+..+.++|+||+..+.......+..
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~ 82 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 82 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence 46789999999999999999999965422211111 11222333455578899999999999999888888999
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCc-ccccCcccceeEEEeecC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDL-SSISSRQHRIKLIATQAP 201 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~ 201 (224)
+|++++|+|+.++.... ....+. .... .++|+++|+||+|+......+...+..+. ........+++++++||+
T Consensus 83 ~d~~ilv~d~~~g~~~~-~~~~~~-~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 157 (179)
T d1wb1a4 83 IDLALIVVDAKEGPKTQ-TGEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 157 (179)
T ss_dssp CCEEEEEEETTTCSCHH-HHHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred ccccccccccccccchh-hhhhhh-hhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence 99999999999874432 233333 3333 47899999999999765222111111110 000011223489999999
Q ss_pred CCCccccchHHHHHHHHHH
Q psy12173 202 SNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 202 ~~~gv~~~~~~~i~~~l~~ 220 (224)
+|+|+ +++.+.+.+.+.+
T Consensus 158 ~g~gi-~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 158 TGFGV-DELKNLIITTLNN 175 (179)
T ss_dssp TCTTH-HHHHHHHHHHHHH
T ss_pred CCcCH-HHHHHHHHhcCCc
Confidence 99999 7777777766654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=3.4e-23 Score=156.97 Aligned_cols=162 Identities=22% Similarity=0.329 Sum_probs=115.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.+||+++|++|||||||++|+. +.. .+.||+|+....+..+...+.+||++|++.++..+..+++.++++++++|
T Consensus 2 ~iKivllG~~~vGKTsll~r~~---f~~--~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~ 76 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR---IIH--GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVS 76 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH---HHH--SCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHh---cCC--CCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEE
Confidence 4799999999999999999994 444 67789999999999999999999999999999999999999999999999
Q ss_pred CCCCCC----------HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC------------------CCHHHHH----h
Q psy12173 132 SADPSK----------LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA------------------LSAEEVG----V 179 (224)
Q Consensus 132 ~~~~~s----------~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------------~~~~~~~----~ 179 (224)
.++..+ +.....++..++......+.|+++++||.|+.+. .+.++.. +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 156 (200)
T d1zcba2 77 SSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVE 156 (200)
T ss_dssp TTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHH
T ss_pred cCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHH
Confidence 998644 4566777778877766678999999999997431 1111111 1
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
.............+.+.+|||+++.||++.|. .+.+.+.
T Consensus 157 ~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~-~v~d~i~ 195 (200)
T d1zcba2 157 CFRGKRRDQQQRPLYHHFTTAINTENIRLVFR-DVKDTIL 195 (200)
T ss_dssp HHHTTCSSCC--CCEEEECCTTCHHHHHHHHH-HHHHHHH
T ss_pred HHHHhccCCCCCceEEEEeeeeCcHHHHHHHH-HHHHHHH
Confidence 11100001111123567899999999966664 5565554
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=8.6e-23 Score=153.88 Aligned_cols=159 Identities=23% Similarity=0.324 Sum_probs=118.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEE
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVD 131 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d 131 (224)
.+||+++|+.|+|||||++|+...++ +|.++....+......+.+||++|++.++..+..+++.++++++|+|
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~-------~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d 74 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHE-------AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVA 74 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHS-------CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC-------CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEe
Confidence 57999999999999999999987654 35567777888899999999999999999999999999999999999
Q ss_pred CCCCCCH----------HHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-----------------CCHHHHH-----h
Q psy12173 132 SADPSKL----------PVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-----------------LSAEEVG-----V 179 (224)
Q Consensus 132 ~~~~~s~----------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----------------~~~~~~~-----~ 179 (224)
.++.+++ .+....+..++........|+++++||.|+... ....+.. +
T Consensus 75 ~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T d1svsa1 75 LSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQ 154 (195)
T ss_dssp GGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHH
T ss_pred ecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHH
Confidence 9987654 344566677776655678999999999986221 1111111 1
Q ss_pred hcCccc-ccCcccceeEEEeecCCCCccccchHHHHHHHHHH
Q psy12173 180 ALDLSS-ISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYA 220 (224)
Q Consensus 180 ~~~~~~-~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~ 220 (224)
..+... ...+. +.+++|||++|.||++.|. .+.+.+.+
T Consensus 155 f~~~~~~~~~~~--~~~~~tSA~~~~nv~~~F~-~v~~~il~ 193 (195)
T d1svsa1 155 FEDLNKRKDTKE--IYTHFTCATDTKNVQFVFD-AVTDVIIK 193 (195)
T ss_dssp HHTTCSCTTTCC--EEEEECCTTCHHHHHHHHH-HHHHHHHH
T ss_pred HHHHhcccCCCc--ceeEEEEeECCHhHHHHHH-HHHHHHHh
Confidence 111111 11133 3788999999999966664 55666543
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=1e-22 Score=152.25 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchh-------HHHHHHhhccCCCE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQEN-------VRRFWNTYFEDTDL 125 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d~ 125 (224)
.|+++|.+|+|||||+|+|++......+....|+......... .+..+.+|||||... ........+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 5999999999999999999987755544445555665555444 567899999999432 11223345788999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCCC
Q psy12173 126 LVFVVDSADPSKLPVAAMELKNLLGDQ-RLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNL 204 (224)
Q Consensus 126 ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 204 (224)
+++++|..... ......+...+.... ...++|+++|+||+|+..+...++..+.+.. ... +++++||++|.
T Consensus 83 ~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~-----~~~--~~~~iSA~tg~ 154 (180)
T d1udxa2 83 LLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-----EGL--AVLPVSALTGA 154 (180)
T ss_dssp EEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----TTS--CEEECCTTTCT
T ss_pred hhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHh-----cCC--eEEEEEcCCCC
Confidence 99999987642 222222222221110 1135899999999999766434444343322 233 89999999999
Q ss_pred ccccchHHHHHHHHHHh
Q psy12173 205 HHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 205 gv~~~~~~~i~~~l~~~ 221 (224)
|+ +++.+.+.+.+...
T Consensus 155 gi-d~L~~~i~~~l~~~ 170 (180)
T d1udxa2 155 GL-PALKEALHALVRST 170 (180)
T ss_dssp TH-HHHHHHHHHHHHTS
T ss_pred CH-HHHHHHHHHHHhhc
Confidence 99 67777888877653
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=9e-22 Score=145.81 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=98.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCceeEEEEEeCCeEEEEEEcCCch---------hHHHHHHhhccCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLS-HNLKPTEGFNITILQKGEYTLNIFELGGQE---------NVRRFWNTYFEDT 123 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~~~~~ 123 (224)
+|+++|++|+|||||+++|++...... .....|.......+......+..+|++|.. .........+..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 799999999999999999998765322 223334445666677888999999999932 2233444557899
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCCC
Q psy12173 124 DLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPSN 203 (224)
Q Consensus 124 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 203 (224)
|+++++.|.++...... ..+...+.. .++|+++|+||+|+.++...+...+..+. ... +++++||++|
T Consensus 82 d~i~~~~~~~~~~~~~~--~~~~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~-----~~~--~~i~iSAk~g 149 (171)
T d1mkya1 82 DLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREFEREVKPELYSL-----GFG--EPIPVSAEHN 149 (171)
T ss_dssp SEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGGG-----SSC--SCEECBTTTT
T ss_pred cEEEEeecccccccccc--ccccccccc---ccccccccchhhhhhhhhhhHHHHHHHhc-----CCC--CeEEEecCCC
Confidence 99999999888754432 333333333 37899999999998644222222222211 222 6789999999
Q ss_pred CccccchHHHHHHHHH
Q psy12173 204 LHHLHVSVVEAEQAMY 219 (224)
Q Consensus 204 ~gv~~~~~~~i~~~l~ 219 (224)
.|+ +++.+.+.+.+.
T Consensus 150 ~gi-d~L~~~i~~~l~ 164 (171)
T d1mkya1 150 INL-DTMLETIIKKLE 164 (171)
T ss_dssp BSH-HHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHhCC
Confidence 999 566666666553
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.1e-21 Score=143.45 Aligned_cols=147 Identities=19% Similarity=0.252 Sum_probs=106.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCch--------hH-HHHHHhhccC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQE--------NV-RRFWNTYFED 122 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~--------~~-~~~~~~~~~~ 122 (224)
+||+++|.+|+|||||+|+|++.+....+.. ..+.......+...+..+.+|||||.. .. .......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 5899999999999999999998764332222 233345566677788999999999932 11 1222334678
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeecCC
Q psy12173 123 TDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQAPS 202 (224)
Q Consensus 123 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 202 (224)
+|++++|+|++++.......- ...+ ...++++++||.|+.+....+++.+.+... . +++++||++
T Consensus 81 ad~ii~v~d~~~~~~~~~~~~-~~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~------~--~~~~vSA~~ 145 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRKI-LERI------KNKRYLVVINKVDVVEKINEEEIKNKLGTD------R--HMVKISALK 145 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHHH-HHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTCS------T--TEEEEEGGG
T ss_pred CCEEEEEEeCCCCcchhhhhh-hhhc------ccccceeeeeeccccchhhhHHHHHHhCCC------C--cEEEEECCC
Confidence 999999999999876554322 2222 367899999999999988888887776532 2 899999999
Q ss_pred CCccccchHHHHH
Q psy12173 203 NLHHLHVSVVEAE 215 (224)
Q Consensus 203 ~~gv~~~~~~~i~ 215 (224)
|+|+ +++.+.+.
T Consensus 146 g~gi-~~L~~~I~ 157 (160)
T d1xzpa2 146 GEGL-EKLEESIY 157 (160)
T ss_dssp TCCH-HHHHHHHH
T ss_pred CCCH-HHHHHHHH
Confidence 9999 45555543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1e-21 Score=147.32 Aligned_cols=164 Identities=18% Similarity=0.098 Sum_probs=109.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCchhHH------------HHHH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQENVR------------RFWN 117 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~------------~~~~ 117 (224)
..+||+++|.+|+|||||+++|++......... ..+.......+..++..+.++|+||..... ....
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 86 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 86 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHH
Confidence 468999999999999999999998764322222 233344455677788999999999964322 1233
Q ss_pred hhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC--CCHHHHHhhcCcccccCcccceeE
Q psy12173 118 TYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA--LSAEEVGVALDLSSISSRQHRIKL 195 (224)
Q Consensus 118 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (224)
..++.+|++++|+|++.+.. .....+...... .+.|+++|+||+|+... ...+++.+.+......... +++
T Consensus 87 ~~~~~~dvii~v~d~~~~~~--~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 159 (186)
T d1mkya2 87 DSIEKADVVVIVLDATQGIT--RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY--SPL 159 (186)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT--SCE
T ss_pred HHHhcCCEEEEeecccccch--hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCC--CeE
Confidence 44678999999999988643 333334444443 47899999999998654 2234444333221111122 389
Q ss_pred EEeecCCCCccccchHHHHHHHHHHhh
Q psy12173 196 IATQAPSNLHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 196 ~~~Sa~~~~gv~~~~~~~i~~~l~~~~ 222 (224)
+++||++|.|+ +++.+.+.+++..+.
T Consensus 160 ~~vSa~~g~gv-~~L~~~i~~~~~~~~ 185 (186)
T d1mkya2 160 IFTSADKGWNI-DRMIDAMNLAYASYT 185 (186)
T ss_dssp EECBTTTTBSH-HHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCH-HHHHHHHHHHHHhCC
Confidence 99999999999 778888898887654
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=9.8e-21 Score=144.32 Aligned_cols=165 Identities=22% Similarity=0.298 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe---CCeEEEEEEcCCchhHHH-HHHhhccCCCEEEEE
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK---GEYTLNIFELGGQENVRR-FWNTYFEDTDLLVFV 129 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~D~~G~~~~~~-~~~~~~~~~d~ii~v 129 (224)
+|+++|++|+|||||+++|+.+.+.. . .+|.+.+...+.. .+..+.+||++|++.++. .+..++..++++++|
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~--~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v 78 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRD--T-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV 78 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCC--B-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc--c-cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceE
Confidence 79999999999999999999988665 3 3566666666654 458899999999998864 567778999999999
Q ss_pred EECCCCCC-HHHHHHHHHHHHhc--CCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcc----------------------
Q psy12173 130 VDSADPSK-LPVAAMELKNLLGD--QRLSTVPILVIANKQDVPGALSAEEVGVALDLS---------------------- 184 (224)
Q Consensus 130 ~d~~~~~s-~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------------- 184 (224)
+|+++..+ +....+++..++.. .....+|++|++||+|+......+++.+.++.+
T Consensus 79 ~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~ 158 (207)
T d2fh5b1 79 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAP 158 (207)
T ss_dssp EETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------C
T ss_pred EEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhh
Confidence 99998655 34455556555432 122468999999999999877776665443210
Q ss_pred -c---------ccCcccceeEEEeecCCCCccc-cchHHHHHHHHHHh
Q psy12173 185 -S---------ISSRQHRIKLIATQAPSNLHHL-HVSVVEAEQAMYAL 221 (224)
Q Consensus 185 -~---------~~~~~~~~~~~~~Sa~~~~gv~-~~~~~~i~~~l~~~ 221 (224)
. +......+.++++|++.|.|.. ......+++++.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 159 AQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp CCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hhhcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 0 0001123579999999988764 34456677776654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=1.5e-21 Score=146.29 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=106.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEe-CCeEEEEEEcCCchhH-------HHHHHhhccCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQK-GEYTLNIFELGGQENV-------RRFWNTYFEDTD 124 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~-------~~~~~~~~~~~d 124 (224)
.+|+++|.+|+|||||+|+|++.+....+....|.......... ++..+.+|||||..+. .......+..++
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 81 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence 37999999999999999999987754444445566666666665 4578999999995321 111223356789
Q ss_pred EEEEEEECCCCCCHHHHHHH--HH--HHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHHHhhcCcccccCcccceeEEEee
Q psy12173 125 LLVFVVDSADPSKLPVAAME--LK--NLLGDQRLSTVPILVIANKQDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQ 199 (224)
Q Consensus 125 ~ii~v~d~~~~~s~~~~~~~--~~--~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 199 (224)
.++++++....+........ .. .........++|+++|+||+|+.+... .+.+.+.+. ... +++++|
T Consensus 82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------~~~--~v~~iS 153 (185)
T d1lnza2 82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDY--PVFPIS 153 (185)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCC--CBCCCS
T ss_pred hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc------cCC--cEEEEE
Confidence 99999988766543332221 11 122223345789999999999976521 122222221 223 899999
Q ss_pred cCCCCccccchHHHHHHHHHHhh
Q psy12173 200 APSNLHHLHVSVVEAEQAMYALS 222 (224)
Q Consensus 200 a~~~~gv~~~~~~~i~~~l~~~~ 222 (224)
|++|.|+ +++...+.+.+...+
T Consensus 154 A~~g~Gi-~~L~~~i~~~L~~~p 175 (185)
T d1lnza2 154 AVTREGL-RELLFEVANQLENTP 175 (185)
T ss_dssp SCCSSTT-HHHHHHHHHHHTSCC
T ss_pred CCCCCCH-HHHHHHHHHhhhhCC
Confidence 9999999 666677777765443
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.83 E-value=6.5e-21 Score=144.22 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=102.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCC--ceeEEEEE---------------------eCCeEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLS---HNLKPTE--GFNITILQ---------------------KGEYTLNI 103 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~---~~~~~t~--~~~~~~~~---------------------~~~~~~~l 103 (224)
+..++|+++|+.++|||||+++|++...... .....|. ++...... .....+.+
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 4578999999999999999999987432110 0011111 11111111 11256899
Q ss_pred EEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCH----HHHHh
Q psy12173 104 FELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSA----EEVGV 179 (224)
Q Consensus 104 ~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~ 179 (224)
+||||+..|.......+..+|++++|+|+.++.......+.+..+... ...+++++.||+|+.+.... +++.+
T Consensus 83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~ 159 (195)
T d1kk1a3 83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 159 (195)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHH
Confidence 999999999998888889999999999999874444444444444333 23568889999999765221 22222
Q ss_pred hcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 180 ALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
.+... ...+++++++||++|+|+ +++.+.+.+
T Consensus 160 ~~~~~----~~~~~~iIpiSA~~G~ni-~~Ll~~I~~ 191 (195)
T d1kk1a3 160 FIEGT----VAENAPIIPISALHGANI-DVLVKAIED 191 (195)
T ss_dssp HHTTS----TTTTCCEEECBTTTTBSH-HHHHHHHHH
T ss_pred Hhccc----cCCCCeEEEEECCCCCCH-HHHHHHHHH
Confidence 22211 112348999999999999 555555543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=1.8e-20 Score=139.94 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=95.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCch-----------h----HHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQE-----------N----VRRFWNT 118 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~-----------~----~~~~~~~ 118 (224)
+|+++|.+|+|||||+|+|++.+....+....|.. ...+... .+.++||||.. . +......
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 77 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--ccccccc--cceecccCCceeccccccccccccchhhhhhhhh
Confidence 69999999999999999999887654222222333 2333444 36789999941 1 1122344
Q ss_pred hccCCCEEEEEEECCCCCC---------HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC--HHHHHhhcCccccc
Q psy12173 119 YFEDTDLLVFVVDSADPSK---------LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS--AEEVGVALDLSSIS 187 (224)
Q Consensus 119 ~~~~~d~ii~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~ 187 (224)
..+.+|++++|+|...... .......+...+.. .++|+++|+||+|+..+.. .+...+.++. ..
T Consensus 78 ~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~- 152 (184)
T d2cxxa1 78 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PL- 152 (184)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CG-
T ss_pred cccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-cc-
Confidence 5678999999999875311 11111222233333 3789999999999875521 1222222222 11
Q ss_pred CcccceeEEEeecCCCCccccchHHHHHHHHH
Q psy12173 188 SRQHRIKLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
......++++||++|.|+ +++.+.+.+.+.
T Consensus 153 -~~~~~~~~~vSA~~g~gi-~~L~~~i~~~l~ 182 (184)
T d2cxxa1 153 -SEIDKVFIPISAKFGDNI-ERLKNRIFEVIR 182 (184)
T ss_dssp -GGHHHHEEECCTTTCTTH-HHHHHHHHHHHH
T ss_pred -cccCCeEEEEECCCCCCH-HHHHHHHHHHcc
Confidence 122236899999999999 667777766654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.83 E-value=9.6e-21 Score=146.57 Aligned_cols=114 Identities=22% Similarity=0.209 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--ceeEE----------------EEEeCCeEEEEEEcCCchhHHH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTE--GFNIT----------------ILQKGEYTLNIFELGGQENVRR 114 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~--~~~~~----------------~~~~~~~~~~l~D~~G~~~~~~ 114 (224)
+.|+++|.+++|||||+++|+............+. +.... .+..++..+.++||||+..|..
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~ 85 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT 85 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence 45999999999999999999864321100000111 11111 1233557899999999999887
Q ss_pred HHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 115 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.....+..+|++|+|+|+.++- ......+...+.. .++|+|+++||+|+...
T Consensus 86 ~~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~p~iivlNK~D~~~~ 137 (227)
T d1g7sa4 86 LRKRGGALADLAILIVDINEGF--KPQTQEALNILRM---YRTPFVVAANKIDRIHG 137 (227)
T ss_dssp SBCSSSBSCSEEEEEEETTTCC--CHHHHHHHHHHHH---TTCCEEEEEECGGGSTT
T ss_pred cchhcccccceEEEEEecccCc--ccchhHHHHHhhc---CCCeEEEEEECccCCCc
Confidence 7777788999999999999863 3333333333333 47899999999998654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=3.8e-20 Score=139.73 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=94.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCch-------------hHHHHH
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQE-------------NVRRFW 116 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~-------------~~~~~~ 116 (224)
...++|+++|.+|+|||||+|+|++.+........++.......... ...+.+.|++|.. .+....
T Consensus 21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T d1svia_ 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc-cccceEEEEEeeccccccccccchhhhHHhhh
Confidence 34568999999999999999999986532211111211111111111 2345567777621 111222
Q ss_pred HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEE
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
......+|++++++|++++.. .....+...+.. .++|+++|+||+|+......++..+.+..... .....+++
T Consensus 100 ~~~~~~~~~vi~viD~~~~~~--~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~--~~~~~~~~ 172 (195)
T d1svia_ 100 ITTREELKAVVQIVDLRHAPS--NDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN--IDPEDELI 172 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT--CCTTSEEE
T ss_pred hccccchhhhhhhhhcccccc--cccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhc--ccCCCCEE
Confidence 344667899999999987633 333344444444 47899999999998765444333322211111 11223899
Q ss_pred EeecCCCCccccchHHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
++||++|.|+ +++...+.+.+.
T Consensus 173 ~~SA~~~~gi-~el~~~i~~~l~ 194 (195)
T d1svia_ 173 LFSSETKKGK-DEAWGAIKKMIN 194 (195)
T ss_dssp ECCTTTCTTH-HHHHHHHHHHHT
T ss_pred EEeCCCCCCH-HHHHHHHHHHhC
Confidence 9999999999 666777777664
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.82 E-value=5.7e-21 Score=147.30 Aligned_cols=114 Identities=32% Similarity=0.526 Sum_probs=100.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
...||+++|+.|+|||||++++..++ ..||+|+....+.+++..+.+||++|++.++..+..+++.++++++|+
T Consensus 5 ~~~KilllG~~~vGKTsll~~~~~~~------~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~ 78 (221)
T d1azta2 5 ATHRLLLLGAGESGKSTIVKQMRILH------VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 78 (221)
T ss_dssp HSEEEEEECSTTSSHHHHHHHHHHHH------CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEE
T ss_pred hcCEEEEECCCCCCHHHHHHHHhcCC------cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEE
Confidence 46899999999999999999997654 347899999999999999999999999999999999999999999999
Q ss_pred ECCCC----------CCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 131 DSADP----------SKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 131 d~~~~----------~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
|.++. .++.+....+..++......++|++|++||+|+.+
T Consensus 79 d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~ 128 (221)
T d1azta2 79 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 128 (221)
T ss_dssp ETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred EccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence 99863 34666777888888887778899999999999854
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.82 E-value=2.9e-20 Score=141.68 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=99.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCC---CCCCC--CceeEEEE--------------------------EeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSH---NLKPT--EGFNITIL--------------------------QKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~---~~~~t--~~~~~~~~--------------------------~~~~ 98 (224)
+++++|+++|+.++|||||+++|++....... ....+ .+...... ....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 35689999999999999999999863311100 00000 00110000 0112
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHH
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVG 178 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 178 (224)
..+.++|+||+..|.......+..+|++|+|+|+.++-......+.+...... .-.|+|++.||+|+.+.....+..
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~ 162 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 162 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence 57899999999999988878889999999999999873233333344433332 235899999999997652222211
Q ss_pred hhcCcccccCcccceeEEEeecCCCCccccchHHHHHH
Q psy12173 179 VALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQ 216 (224)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~ 216 (224)
..............++++++||++|.|+ +++.+.+.+
T Consensus 163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI-~~L~e~i~~ 199 (205)
T d2qn6a3 163 RQIKQFTKGTWAENVPIIPVSALHKINI-DSLIEGIEE 199 (205)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSH-HHHHHHHHH
T ss_pred HHHHHHhccccCCCCeEEEEeCCCCCCh-HHHHHHHHh
Confidence 1111100011122348999999999999 555545443
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.80 E-value=5.9e-20 Score=138.67 Aligned_cols=148 Identities=18% Similarity=0.063 Sum_probs=100.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC----------------CCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG----------------NTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRR 114 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~----------------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 114 (224)
++++|+++|+.++|||||+++|+.. ....+.....|+......+.+.+..+.++||||+..|..
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~ 81 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence 4679999999999999999999741 011111122233344455666889999999999999998
Q ss_pred HHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC-HHHH----HhhcCcccccCc
Q psy12173 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS-AEEV----GVALDLSSISSR 189 (224)
Q Consensus 115 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~----~~~~~~~~~~~~ 189 (224)
.....+..+|++++|+|+.++-. .+..+.+...... ...|+|++.||+|+..+.. .+.+ .+.+........
T Consensus 82 ~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 157 (196)
T d1d2ea3 82 NMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (196)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence 88888999999999999998733 3334444444333 3568999999999975411 2222 222211111112
Q ss_pred ccceeEEEeecCCCC
Q psy12173 190 QHRIKLIATQAPSNL 204 (224)
Q Consensus 190 ~~~~~~~~~Sa~~~~ 204 (224)
.++++++||++|.
T Consensus 158 --~~pii~iSa~~g~ 170 (196)
T d1d2ea3 158 --ETPIIVGSALCAL 170 (196)
T ss_dssp --TSCEEECCHHHHH
T ss_pred --cCEEEEEEccccc
Confidence 2489999999883
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.79 E-value=1.7e-18 Score=133.03 Aligned_cols=153 Identities=17% Similarity=0.117 Sum_probs=101.3
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------------CCCCCCCCCceeEEEEE
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGN--TS-------------------------------LSHNLKPTEGFNITILQ 95 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~--~~-------------------------------~~~~~~~t~~~~~~~~~ 95 (224)
....++|+++|+.++|||||+++|+... .. .+.....+.......+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 3457889999999999999999996311 00 00011223334445566
Q ss_pred eCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCCCCCC-
Q psy12173 96 KGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTV-PILVIANKQDVPGALS- 173 (224)
Q Consensus 96 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~- 173 (224)
..++.+.++|+||+..|..........+|++++|+|+.++-.-+ ..+. ..+... .++ .+|++.||+|+.+...
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~-~~~~~~---~gv~~iiv~vNK~D~~~~~~~ 160 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRH-SYIASL---LGIKHIVVAINKMDLNGFDER 160 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHH-HHHHHH---TTCCEEEEEEECTTTTTSCHH
T ss_pred ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHH-HHHHHH---cCCCEEEEEEEccccccccce
Confidence 67899999999999999998888899999999999999873322 2333 333333 354 5899999999976421
Q ss_pred -HHH----HHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 174 -AEE----VGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 174 -~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
.++ +...++...+ ....++|+++||++|.|+.+
T Consensus 161 ~~~~~~~~l~~~~~~~~~--~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 161 VFESIKADYLKFAEGIAF--KPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp HHHHHHHHHHHHHHTTTC--CCSEEEEEECCTTTCTTTSS
T ss_pred ehhhhHHHHhhhhHhhcc--CCCceEEEEEEcccCccCCc
Confidence 122 2222211111 12234899999999999954
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=4e-19 Score=135.04 Aligned_cols=146 Identities=16% Similarity=0.080 Sum_probs=99.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--------CC---------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--------TS---------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENVR 113 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--------~~---------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~ 113 (224)
++++|+++|++++|||||+++|+... .. .+.....|++.....+.+++.++.++||||+..|.
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~ 81 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 81 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence 46799999999999999999997310 00 00111345666777888899999999999999999
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCC-CHHHH----HhhcCccccc
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGAL-SAEEV----GVALDLSSIS 187 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~~~----~~~~~~~~~~ 187 (224)
......+..+|++|+|+|+.++-..+ ..+.+..... .++| +++++||+|+.+.. ..+++ .+.+....+
T Consensus 82 ~~~~~~~~~aD~avlVvda~~Gv~~q-t~~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~- 155 (204)
T d2c78a3 82 KNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF- 155 (204)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC-
Confidence 98888899999999999999884433 3344444433 3555 78889999997641 12222 222221122
Q ss_pred CcccceeEEEeecCCC
Q psy12173 188 SRQHRIKLIATQAPSN 203 (224)
Q Consensus 188 ~~~~~~~~~~~Sa~~~ 203 (224)
....+++++.||..+
T Consensus 156 -~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 156 -PGDEVPVIRGSALLA 170 (204)
T ss_dssp -CTTTSCEEECCHHHH
T ss_pred -Ccccceeeeeechhh
Confidence 122348899998644
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=2.7e-18 Score=130.41 Aligned_cols=123 Identities=23% Similarity=0.315 Sum_probs=90.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHH----HhhccCCCEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFW----NTYFEDTDLL 126 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~----~~~~~~~d~i 126 (224)
+.++|+++|++|+|||||+|+|++.++.+ . .|.......+..++..+.+||+||++.++..+ ......++.+
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~--~--tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~ 77 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP--T--VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL 77 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCC--B--CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC--e--EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence 45799999999999999999999987654 2 23344555666778889999999998765543 3335667899
Q ss_pred EEEEECCC-CCCHHHHHHHHHHHH---hcCCCCCCcEEEEEeCCCCCCCCCHHHH
Q psy12173 127 VFVVDSAD-PSKLPVAAMELKNLL---GDQRLSTVPILVIANKQDVPGALSAEEV 177 (224)
Q Consensus 127 i~v~d~~~-~~s~~~~~~~~~~~~---~~~~~~~~piilv~nK~Dl~~~~~~~~~ 177 (224)
++++|+.+ ..++.....++..+. ......++|+++++||+|+.+....+.+
T Consensus 78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~ 132 (209)
T d1nrjb_ 78 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKI 132 (209)
T ss_dssp EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHH
T ss_pred ceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcHHHH
Confidence 99999775 566777777665443 2233468999999999999876554443
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.72 E-value=1.5e-17 Score=129.58 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=89.0
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCCCCCceeEEEEEe
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGNT-------------------------------SLSHNLKPTEGFNITILQK 96 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~ 96 (224)
.....++|+++|+.++|||||+.+|+..-- ..+.....++......+.+
T Consensus 20 ~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~ 99 (245)
T d1r5ba3 20 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 99 (245)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc
Confidence 345678999999999999999999953110 0011122233344445666
Q ss_pred CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC------CHHHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCC
Q psy12173 97 GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS------KLPVAAMELKNLLGDQRLSTV-PILVIANKQDVP 169 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~ 169 (224)
++..+.++|+||+..|..........+|++++|+|+.++. ...+..+.+... .. .++ ++++++||+|+.
T Consensus 100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~~---~~i~~iiv~iNKmD~~ 175 (245)
T d1r5ba3 100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVINKMDEP 175 (245)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEEECTTST
T ss_pred ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-HH---cCCCeEEEEEEcCCCC
Confidence 7889999999999999998888899999999999998851 011222333222 22 244 588999999997
Q ss_pred CC-CCH---HHHHhhcCccc--c--cCcccceeEEEeecCCCCccccc
Q psy12173 170 GA-LSA---EEVGVALDLSS--I--SSRQHRIKLIATQAPSNLHHLHV 209 (224)
Q Consensus 170 ~~-~~~---~~~~~~~~~~~--~--~~~~~~~~~~~~Sa~~~~gv~~~ 209 (224)
.. ... +++.+.++... . ......++|+++||++|+|+.+.
T Consensus 176 ~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~ 223 (245)
T d1r5ba3 176 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 223 (245)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccc
Confidence 53 222 23322222100 0 01122458999999999999654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=4.7e-17 Score=120.56 Aligned_cols=156 Identities=20% Similarity=0.277 Sum_probs=96.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCcee-EEEEEeCCeEEEEEEcCCchhHHHH-----H----Hhhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFN-ITILQKGEYTLNIFELGGQENVRRF-----W----NTYF 120 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~D~~G~~~~~~~-----~----~~~~ 120 (224)
+.-.|+++|.+|+|||||+|+|++.+....+....|.... ..........+..+|++|....... . ....
T Consensus 4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (179)
T d1egaa1 4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 83 (179)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccch
Confidence 4457999999999999999999987754333333444433 3444557778888999985433221 1 1123
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEeec
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIATQA 200 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 200 (224)
..+++++++.|..+. ..........+.. ...|.++++||+|..... .+.....+........ .+++++||
T Consensus 84 ~~~~~~l~~~d~~~~--~~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~--~~~~~~~~~~~~~~~~--~~~~~vSA 153 (179)
T d1egaa1 84 GDVELVIFVVEGTRW--TPDDEMVLNKLRE----GKAPVILAVNKVDNVQEK--ADLLPHLQFLASQMNF--LDIVPISA 153 (179)
T ss_dssp CCEEEEEEEEETTCC--CHHHHHHHHHHHS----SSSCEEEEEESTTTCCCH--HHHHHHHHHHHTTSCC--SEEEECCT
T ss_pred hhcceeEEEEecCcc--chhHHHHHHHhhh----ccCceeeeeeeeeccchh--hhhhhHhhhhhhhcCC--CCEEEEeC
Confidence 456778888887764 3333344444433 367899999999987652 2222211111111122 38999999
Q ss_pred CCCCccccchHHHHHHH
Q psy12173 201 PSNLHHLHVSVVEAEQA 217 (224)
Q Consensus 201 ~~~~gv~~~~~~~i~~~ 217 (224)
++|.|+ +++.+.+.+.
T Consensus 154 ~~g~gi-~~L~~~i~~~ 169 (179)
T d1egaa1 154 ETGLNV-DTIAAIVRKH 169 (179)
T ss_dssp TTTTTH-HHHHHHHHTT
T ss_pred cCCCCH-HHHHHHHHHh
Confidence 999999 5555555443
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=1.9e-17 Score=128.46 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=104.6
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC--CCC-----------------------------CCCCCCCCCceeEEEEEeCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG--NTS-----------------------------LSHNLKPTEGFNITILQKGE 98 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~--~~~-----------------------------~~~~~~~t~~~~~~~~~~~~ 98 (224)
..+++|+++|+.++|||||+.+|+.. ... .+.....|+......+.+.+
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 34689999999999999999999631 000 01123456667788888899
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCC------CHHHHHHHHHHHHhcCCCCCC-cEEEEEeCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPS------KLPVAAMELKNLLGDQRLSTV-PILVIANKQDVPGA 171 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~ 171 (224)
+++.++|+|||..|..........+|++|+|+|+..+. ...+..+.+..... .++ ++|+++||+|+.+.
T Consensus 84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCCC
Confidence 99999999999999998888899999999999998751 11123333333322 255 48899999998764
Q ss_pred CC--HHHH----HhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 172 LS--AEEV----GVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 172 ~~--~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
.. .+++ .+.+..... ....++++++||..|.|+-+
T Consensus 160 d~~~~~~~~~el~~~l~~~~~--~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 160 DESRFQEIVKETSNFIKKVGY--NPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC--CGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEEEccCCCccee
Confidence 21 1222 222211111 12234899999999998743
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.70 E-value=2.2e-17 Score=127.17 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=97.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCCCCCCCCceeEEEEEeCCe
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNT-------------------------------SLSHNLKPTEGFNITILQKGEY 99 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 99 (224)
++++|+++|+.++|||||+.+|+...- ..+.....|.......+.+++.
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence 367999999999999999999963110 0111223344445556677889
Q ss_pred EEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCC------HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC-C
Q psy12173 100 TLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSK------LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA-L 172 (224)
Q Consensus 100 ~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~ 172 (224)
.+.++|||||..|..........+|++|+|+|+.++-. ..+..+.+.-.... ...++|++.||+|+... .
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~~~iIv~iNK~D~~~~~~ 158 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEPPY 158 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSSTT
T ss_pred eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CCCceEEEEEcccCCCccc
Confidence 99999999999999999888999999999999998621 11222222222221 24578999999999753 2
Q ss_pred CHHHHH---hhcCcc--cccCcccceeEEEeecCCCCcccc
Q psy12173 173 SAEEVG---VALDLS--SISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 173 ~~~~~~---~~~~~~--~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
+.+... ..+... ........++++++||..|.|+.+
T Consensus 159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 322221 111100 001122234899999999999854
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.7e-16 Score=117.86 Aligned_cols=163 Identities=12% Similarity=0.054 Sum_probs=87.4
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEE-EEeCCeEEEEEEcCCch--------hHHH---HH
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITI-LQKGEYTLNIFELGGQE--------NVRR---FW 116 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~D~~G~~--------~~~~---~~ 116 (224)
.+..++|+++|.+|+|||||+|+|.+.+........++....... ....+......+.++.. .... ..
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY 92 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence 456899999999999999999999988754422223333222222 22344443433333311 1111 11
Q ss_pred HhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEE
Q psy12173 117 NTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLI 196 (224)
Q Consensus 117 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (224)
.......+.++.+.+........ ...++..... ...++++++||+|+.......+..+.+.. .........+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~-~l~~~~~~~~~i 166 (188)
T d1puia_ 93 LEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVRE-AVLAFNGDVQVE 166 (188)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHH-HHGGGCSCEEEE
T ss_pred hhhhhheeEEEEeecccccchhH-HHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHH-HHHhhCCCCcEE
Confidence 22234455666666666653332 3334444433 36889999999999775333222222211 111122234899
Q ss_pred EeecCCCCccccchHHHHHHHH
Q psy12173 197 ATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 197 ~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
++||++|.|+ +++...|.+++
T Consensus 167 ~vSA~~g~Gi-d~L~~~i~~~~ 187 (188)
T d1puia_ 167 TFSSLKKQGV-DKLRQKLDTWF 187 (188)
T ss_dssp ECBTTTTBSH-HHHHHHHHHHH
T ss_pred EEeCCCCCCH-HHHHHHHHHHh
Confidence 9999999999 66666776654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=5.5e-16 Score=121.98 Aligned_cols=128 Identities=20% Similarity=0.125 Sum_probs=95.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--CC----------------CCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhH
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN--TS----------------LSHNLKPTEGFNITILQKGEYTLNIFELGGQENV 112 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~--~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~ 112 (224)
+.++|+++|+.++|||||+.+++... .. .+.....|+......+.+++.+++++||||+..|
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence 45689999999999999999997411 00 1112234556777889999999999999999999
Q ss_pred HHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC---CCHHHHHhhcCc
Q psy12173 113 RRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA---LSAEEVGVALDL 183 (224)
Q Consensus 113 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~ 183 (224)
.......++.+|++|+|+|+.++-... ....|..... .++|.++++||+|.... ...+++++.+..
T Consensus 85 ~~e~~~~l~~~D~avlVvda~~Gv~~~-T~~~w~~a~~----~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~ 153 (276)
T d2bv3a2 85 TIEVERSMRVLDGAIVVFDSSQGVEPQ-SETVWRQAEK----YKVPRIAFANKMDKTGADLWLVIRTMQERLGA 153 (276)
T ss_dssp STTHHHHHHHCCEEEEEEETTTSSCHH-HHHHHHHHHT----TTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhhheEEeccccCCcchh-HHHHHHHHHH----cCCCEEEEEecccccccccchhHHHHHHHhCC
Confidence 888888899999999999999984433 3444555443 48999999999999775 234555555554
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.65 E-value=8e-16 Score=120.69 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=86.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC--C------C----------CCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHH
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTS--L------S----------HNLKPTEGFNITILQKGEYTLNIFELGGQENVRR 114 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~--~------~----------~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 114 (224)
++|+++|+.++|||||+.+++...-. . . .....|+......+.+++.++.++||||+.+|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence 58999999999999999999632110 0 0 0122355566778899999999999999999999
Q ss_pred HHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q psy12173 115 FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVP 169 (224)
Q Consensus 115 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 169 (224)
.....++.+|++|+|+|+.++-... ....|..... .++|.++++||+|..
T Consensus 83 e~~~al~~~D~avlvvda~~Gv~~~-t~~~~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 83 EIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hhhhhhcccCceEEEeeccCCccch-hHHHHHhhhh----ccccccccccccccc
Confidence 8888899999999999999874433 3444444444 389999999999974
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=1.3e-13 Score=111.42 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=98.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCCCCCCCCceeEEEEEe----------------CC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNT----------------SLSHNLKPTEGFNITILQK----------------GE 98 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~----------------~~ 98 (224)
+.++|+++|+.++|||||+.+|+...- ..+.....|+......+.+ ++
T Consensus 16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 95 (341)
T d1n0ua2 16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 95 (341)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence 456799999999999999999972110 0001112233333333322 34
Q ss_pred eEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC---CCCHH
Q psy12173 99 YTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPG---ALSAE 175 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~ 175 (224)
..++++||||+..|.......++-+|++++|+|+.++-... ....+..... .++|+++++||+|... ....+
T Consensus 96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~q-T~~~~~~a~~----~~~p~i~viNKiDr~~~el~~~~~ 170 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ-TETVLRQALG----ERIKPVVVINKVDRALLELQVSKE 170 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHH-HHHHHHHHHH----TTCEEEEEEECHHHHHHTSCCCHH
T ss_pred eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchh-HHHHHHHHHH----cCCCeEEEEECcccccccHHhhHH
Confidence 67999999999999988888899999999999999984443 3444544444 3799999999999743 23444
Q ss_pred HHHhhcCc--------------cc---ccCcccceeEEEeecCCCCccc
Q psy12173 176 EVGVALDL--------------SS---ISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 176 ~~~~~~~~--------------~~---~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
++.+.+.. .. ..-......++..||+.|.+..
T Consensus 171 ~~~~~l~~~i~~vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~~Ft 219 (341)
T d1n0ua2 171 DLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFT 219 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEE
T ss_pred HHHHHHcCccccccceeeecccccccccccCcccCceEecccccCeEEe
Confidence 44333320 00 0001112368889999887653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.44 E-value=1.4e-12 Score=101.92 Aligned_cols=119 Identities=15% Similarity=0.143 Sum_probs=78.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCceeEEEEEeCCeEEEEEEcCCch-------hHHHHHH--hh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNL-KPTEGFNITILQKGEYTLNIFELGGQE-------NVRRFWN--TY 119 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~D~~G~~-------~~~~~~~--~~ 119 (224)
...++|+++|.+|+|||||+|.+++......+.. ..|...........+..+.++||||.. ....... ..
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~ 109 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 109 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHh
Confidence 3568999999999999999999998774433333 334445666677889999999999942 2222221 22
Q ss_pred ccCCCEEEEEEECCCCCCHHHH---HHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q psy12173 120 FEDTDLLVFVVDSADPSKLPVA---AMELKNLLGDQRLSTVPILVIANKQDVPG 170 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 170 (224)
....|++++|++++...--... ...+...+... --.++++|.||+|...
T Consensus 110 ~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 110 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP 161 (257)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred cCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence 3456899999998765321222 22333333221 1357999999999875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=1.3e-13 Score=114.36 Aligned_cols=110 Identities=11% Similarity=0.142 Sum_probs=67.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCCCCCc-eeEEEEEeCCeEEEEEEcCCchhH----HH-HHHhhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSH----NLKPTEG-FNITILQKGEYTLNIFELGGQENV----RR-FWNTYF 120 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~----~~~~t~~-~~~~~~~~~~~~~~l~D~~G~~~~----~~-~~~~~~ 120 (224)
..++|+++|.+|+|||||+|+|.+....... ...+|+. ...+. ..+..++.+|||||.... .. .....+
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~ 133 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 133 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence 4589999999999999999999985532211 1112222 22211 124456889999995432 11 223346
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
..+|.+|++.|.. +......+...+.. .++|+++|.||+|.
T Consensus 134 ~~~d~~l~~~~~~----~~~~d~~l~~~l~~---~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 134 YEYDFFIIISATR----FKKNDIDIAKAISM---MKKEFYFVRTKVDS 174 (400)
T ss_dssp GGCSEEEEEESSC----CCHHHHHHHHHHHH---TTCEEEEEECCHHH
T ss_pred hcceEEEEecCCC----CCHHHHHHHHHHHH---cCCCEEEEEeCccc
Confidence 6789888887643 23333333333333 37999999999995
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.33 E-value=9.5e-14 Score=107.13 Aligned_cols=119 Identities=12% Similarity=-0.040 Sum_probs=69.1
Q ss_pred eEEEEEEcCCchhHHHHHHh---h--ccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCC
Q psy12173 99 YTLNIFELGGQENVRRFWNT---Y--FEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALS 173 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~~~~~---~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 173 (224)
..+.++|+||+......... . ....+.+++++|+.....-...................|.++++||+|+.....
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~ 174 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 174 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHH
Confidence 56899999999876442211 1 235678999999886544333322221111000003689999999999987522
Q ss_pred HHHHHhhcCc----------ccc-------------cCcccceeEEEeecCCCCccccchHHHHHHHH
Q psy12173 174 AEEVGVALDL----------SSI-------------SSRQHRIKLIATQAPSNLHHLHVSVVEAEQAM 218 (224)
Q Consensus 174 ~~~~~~~~~~----------~~~-------------~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l 218 (224)
.+......+. ... ......++++++||++|+|+ +++...+.+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi-~~L~~~l~e~~ 241 (244)
T d1yrba1 175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF-EDLETLAYEHY 241 (244)
T ss_dssp HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCH-HHHHHHHHHHh
Confidence 2221111000 000 00112348999999999999 67777877764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=7.2e-13 Score=106.67 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=90.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc------CCCCCCCCCCCCCc---------------------eeEEEEEe------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS------GNTSLSHNLKPTEG---------------------FNITILQK------ 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~------~~~~~~~~~~~t~~---------------------~~~~~~~~------ 96 (224)
.+.++|++.|+||+|||||+++|.. .+... -...|+.. ........
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav-lavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg 130 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV-IAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 130 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE-EEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceee-ecCCCceeeeccccccchhHHHHhccccccccccccccccccc
Confidence 3578999999999999999999973 22100 00011111 11111110
Q ss_pred --------------CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEE
Q psy12173 97 --------------GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVI 162 (224)
Q Consensus 97 --------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 162 (224)
.+..+.+++|.|.---.. .....+|.+++|.+...++........+.++ +=++|
T Consensus 131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~V 198 (327)
T d2p67a1 131 ASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIV 198 (327)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHH---------CSEEE
T ss_pred chhhhhHHHHHHHhcCCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEE
Confidence 023455666665322111 1345789999999888776665554444444 22889
Q ss_pred EeCCCCCCCCCH----HHHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 163 ANKQDVPGALSA----EEVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 163 ~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
+||+|+...... .+....+.........|..+++.|||++|+|+ +++.+.|.+....+
T Consensus 199 vNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi-~eL~~~I~~~~~~l 260 (327)
T d2p67a1 199 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGI-DEIWHAIIDFKTAL 260 (327)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH-HHHHHHHHHHHHHH
T ss_pred EEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCH-HHHHHHHHHHHHHH
Confidence 999998764222 22233332222233556669999999999999 78888887766543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.22 E-value=6.4e-11 Score=94.10 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=63.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchh-
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNT-SLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQEN- 111 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~- 111 (224)
..++|+++|.|+||||||+++++.... ...+..+.|++++...+.+.+ ..+.++|+||...
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g 88 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 88 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence 458999999999999999999997653 344566678887777776543 4789999998432
Q ss_pred ------HHHHHHhhccCCCEEEEEEECCC
Q psy12173 112 ------VRRFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 112 ------~~~~~~~~~~~~d~ii~v~d~~~ 134 (224)
....+...++.+|++++|+|+.+
T Consensus 89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccHHHHHHHhhccceeEEEEeccC
Confidence 12233445899999999999876
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.21 E-value=3.4e-11 Score=96.62 Aligned_cols=159 Identities=15% Similarity=0.073 Sum_probs=93.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC----CCC---CCCCCC-----------------CCc--eeEEEEEe-------
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN----TSL---SHNLKP-----------------TEG--FNITILQK------- 96 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~----~~~---~~~~~~-----------------t~~--~~~~~~~~------- 96 (224)
.+.++|.+.|+||+|||||+++|.... ... ..+..+ ..+ ........
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 357899999999999999999998521 000 000000 000 11111110
Q ss_pred -------------CCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEE
Q psy12173 97 -------------GEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIA 163 (224)
Q Consensus 97 -------------~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 163 (224)
.+..+.++.|.|.---... ...-+|.+++|.....++..+....-+.++ +=++|+
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~---------aDi~vv 196 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFEL---------ADMIAV 196 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHHH---------CSEEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhhh---------hheeeE
Confidence 2367788888874332222 234599999999999886654333222222 239999
Q ss_pred eCCCCCCCCCH-H----HHHhhcCcccccCcccceeEEEeecCCCCccccchHHHHHHHHHHh
Q psy12173 164 NKQDVPGALSA-E----EVGVALDLSSISSRQHRIKLIATQAPSNLHHLHVSVVEAEQAMYAL 221 (224)
Q Consensus 164 nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~~i~~~l~~~ 221 (224)
||+|+.+.... . +....+.........|..+++.|||++|.|+ +++...+.+....+
T Consensus 197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi-~el~~~I~~~~~~~ 258 (323)
T d2qm8a1 197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGL-DSLWSRIEDHRSKL 258 (323)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSH-HHHHHHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCH-HHHHHHHHHHHHHH
Confidence 99998776322 1 2233333333344556669999999999999 88888887776543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.04 E-value=1.8e-10 Score=92.35 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=47.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEE------------------------eCCeEEEEEEcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQ------------------------KGEYTLNIFELGG 108 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~~~l~D~~G 108 (224)
++|+++|.|++|||||+|+|++.+....+..+.|++.+.+... .....+.++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 4899999999999999999999876554555566665544321 1225799999999
Q ss_pred chhHH-------HHHHhhccCCCEEEEEEECCC
Q psy12173 109 QENVR-------RFWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 109 ~~~~~-------~~~~~~~~~~d~ii~v~d~~~ 134 (224)
..... ......++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 54321 122334679999999999874
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.02 E-value=3.3e-10 Score=89.09 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=59.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCC-----------------eEEEEEEcCCchhHHH-
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGE-----------------YTLNIFELGGQENVRR- 114 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~~~~- 114 (224)
+||.++|-|++|||||+++++.......+..+.|+.++...+.+.+ -.+.++|+||......
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~ 82 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence 6999999999999999999998876555556677777777766543 2588999999543322
Q ss_pred ------HHHhhccCCCEEEEEEECCC
Q psy12173 115 ------FWNTYFEDTDLLVFVVDSAD 134 (224)
Q Consensus 115 ------~~~~~~~~~d~ii~v~d~~~ 134 (224)
.+...++.+|++++|+|...
T Consensus 83 g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCCccHHHHHHHHhccceEEEeeccC
Confidence 23445889999999998753
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=6.9e-09 Score=82.00 Aligned_cols=115 Identities=12% Similarity=0.121 Sum_probs=71.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEE---------------------------------------
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNIT--------------------------------------- 92 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~--------------------------------------- 92 (224)
.++|+|+|+-++|||||+|+|++..+.+. ...+++.....
T Consensus 26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~-~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPR-GSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCC-CSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEcCCCCCHHHHHHHHhCCCcCCC-CCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999886332 22233321100
Q ss_pred -----------E--EEe-CCeEEEEEEcCCchh-------------HHHHHHhhccCCCE-EEEEEECCCCCCHHHHHHH
Q psy12173 93 -----------I--LQK-GEYTLNIFELGGQEN-------------VRRFWNTYFEDTDL-LVFVVDSADPSKLPVAAME 144 (224)
Q Consensus 93 -----------~--~~~-~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~ 144 (224)
. +.. .-..+.++|+||... .......++...+. +++|.+....-+......+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~ 184 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence 0 111 113488999999421 22344555666765 5556666655444444444
Q ss_pred HHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 145 LKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 145 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
...+- ....++++|.||+|...+
T Consensus 185 ~~~~~----~~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 185 AKEVD----PQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHC----TTCSSEEEEEECGGGSCT
T ss_pred HHHhC----cCCCceeeEEeccccccc
Confidence 44442 246789999999999765
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.90 E-value=8.1e-09 Score=81.94 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=69.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCce-e----------------------------------------
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGF-N---------------------------------------- 90 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~-~---------------------------------------- 90 (224)
.++|+|+|+.++|||||+|+|++..+.+. ...+++.. .
T Consensus 24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~-~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (306)
T d1jwyb_ 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPR-GSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (306)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC---------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHhCCCCCCC-CCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHH
Confidence 35899999999999999999999886331 11111110 0
Q ss_pred -------------------EEEEEe-CCeEEEEEEcCCchh-------------HHHHHHhhccCCCEEEEEE-ECCCCC
Q psy12173 91 -------------------ITILQK-GEYTLNIFELGGQEN-------------VRRFWNTYFEDTDLLVFVV-DSADPS 136 (224)
Q Consensus 91 -------------------~~~~~~-~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~ii~v~-d~~~~~ 136 (224)
...+.. .-..+.++||||... .......++..++.+++++ +.....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~ 182 (306)
T d1jwyb_ 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (306)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccc
Confidence 000111 124688999999532 2245566788899866665 444332
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 137 KLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 137 s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
.......+...+ .....++++|.||+|....
T Consensus 183 ~~~~~~~~~~~~----~~~~~r~i~Vitk~D~~~~ 213 (306)
T d1jwyb_ 183 ANSDALQLAKEV----DPEGKRTIGVITKLDLMDK 213 (306)
T ss_dssp TTCSHHHHHHHH----CSSCSSEEEEEECTTSSCS
T ss_pred cccHHHHHHHHh----CcCCCeEEEEEeccccccc
Confidence 333333333343 2235789999999998765
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.27 E-value=2.8e-07 Score=71.78 Aligned_cols=57 Identities=26% Similarity=0.321 Sum_probs=36.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCceeEEEEEeCCeEEEEEEcCCc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLK-PTEGFNITILQKGEYTLNIFELGGQ 109 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~D~~G~ 109 (224)
...++|+++|.|++|||||+|+|.+.+.......+ .|.+... + ..+..+.++||||.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~--i-~~~~~~~l~DTPGi 167 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--V-KVGKELELLDTPGI 167 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--E-EETTTEEEEECCCC
T ss_pred CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceE--E-ECCCCeEEecCCCc
Confidence 35689999999999999999999998743322111 1222111 1 12356999999994
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.18 E-value=1.1e-06 Score=68.16 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=62.8
Q ss_pred HHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccce
Q psy12173 114 RFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRI 193 (224)
Q Consensus 114 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (224)
......++.+|+||+|+|+.+|-+..+ ..+..++ .++|.++|+||+|+.+....+++.+.++. ...
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~-----~~~-- 72 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFEN-----QGI-- 72 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHT-----TTC--
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHh-----cCC--
Confidence 344556899999999999998855433 3344443 26899999999999876545555555432 222
Q ss_pred eEEEeecCCCCccccchHHHHHHHHH
Q psy12173 194 KLIATQAPSNLHHLHVSVVEAEQAMY 219 (224)
Q Consensus 194 ~~~~~Sa~~~~gv~~~~~~~i~~~l~ 219 (224)
.++.+||+++.|. ......+.+.+.
T Consensus 73 ~~i~isa~~~~~~-~~~~~~~~~~l~ 97 (273)
T d1puja_ 73 RSLSINSVNGQGL-NQIVPASKEILQ 97 (273)
T ss_dssp CEEECCTTTCTTG-GGHHHHHHHHHH
T ss_pred ccceeecccCCCc-cccchhhhhhhh
Confidence 7889999999998 555555554443
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.98 E-value=1.5e-06 Score=65.20 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=34.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC------ceeEEEEEeCCeEEEEEEcCCchh
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTE------GFNITILQKGEYTLNIFELGGQEN 111 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~------~~~~~~~~~~~~~~~l~D~~G~~~ 111 (224)
....+++|++|+|||||+|+|.+............. .....-+...+ .-.++||||..+
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~-gg~iiDTPG~r~ 159 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF-GGYVVDTPGFAN 159 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT-SCEEESSCSSTT
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC-CcEEEeCCcccc
Confidence 457899999999999999999876533211111111 11111222221 258999999644
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.94 E-value=5.4e-06 Score=62.07 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=54.7
Q ss_pred ccCCCEEEEEEECCCCCC-HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHHHhhcCcccccCcccceeEEEe
Q psy12173 120 FEDTDLLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEVGVALDLSSISSRQHRIKLIAT 198 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (224)
..+.|.+++|+++.+|+. ...+.+++..... .++|.+||+||+|+.++...+++.+..+. ..... +++.+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~---~~~~~--~v~~v 78 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI---YSGLY--PIVKT 78 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH---HTTTS--CEEEC
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhcc---cccce--eEEEe
Confidence 567899999999988754 3444555544433 48999999999999765333333322221 11223 88999
Q ss_pred ecCCCCccccchHH
Q psy12173 199 QAPSNLHHLHVSVV 212 (224)
Q Consensus 199 Sa~~~~gv~~~~~~ 212 (224)
||+++.|+ +.+..
T Consensus 79 Sa~~~~g~-~~L~~ 91 (225)
T d1u0la2 79 SAKTGMGI-EELKE 91 (225)
T ss_dssp CTTTCTTH-HHHHH
T ss_pred ccccchhH-hhHHH
Confidence 99999998 44443
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.80 E-value=1.9e-06 Score=64.91 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-..+++|++|+|||||+|+|.+..
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred cceEEEECCCCccHHHHHHhhccHh
Confidence 3466899999999999999999865
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=5.3e-05 Score=56.62 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.+-+++.|.-|||||||+++++...
T Consensus 3 iPv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 3 IAVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CCEEEEeeCCCCCHHHHHHHHHhcC
Confidence 4567899999999999999998753
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=0.00011 Score=54.38 Aligned_cols=91 Identities=7% Similarity=-0.063 Sum_probs=49.9
Q ss_pred CeEEEEEEcCCchhHHH----HH---Hhhcc-----CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q psy12173 98 EYTLNIFELGGQENVRR----FW---NTYFE-----DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANK 165 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~----~~---~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 165 (224)
+..+.++||+|...... .+ ....+ ..+-+++|+|++.. .+...+..... .. --+-=++.||
T Consensus 91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~-~~----~~~~~lIlTK 163 (211)
T d2qy9a2 91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFH-EA----VGLTGITLTK 163 (211)
T ss_dssp TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHH-HH----SCCCEEEEEC
T ss_pred CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhh-hc----cCCceEEEee
Confidence 45789999999432221 11 11122 35789999999876 33333322222 21 1233678999
Q ss_pred CCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 166 QDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 166 ~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
.|...... .-.+....++ |+..++ .|++++
T Consensus 164 lDe~~~~G~~l~~~~~~~~----------Pi~~i~--~Gq~v~ 194 (211)
T d2qy9a2 164 LDGTAKGGVIFSVADQFGI----------PIRYIG--VGERIE 194 (211)
T ss_dssp CTTCTTTTHHHHHHHHHCC----------CEEEEE--CSSSGG
T ss_pred cCCCCCccHHHHHHHHHCC----------CEEEEe--CCCCcc
Confidence 99866522 2222222222 777776 677774
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.69 E-value=0.00014 Score=53.85 Aligned_cols=91 Identities=9% Similarity=-0.018 Sum_probs=49.1
Q ss_pred CeEEEEEEcCCchhHHH----HHH---hhcc-----CCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q psy12173 98 EYTLNIFELGGQENVRR----FWN---TYFE-----DTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANK 165 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~----~~~---~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 165 (224)
+.++.++||+|...... .+. ...+ ..+-+++|+|++.. .+...+........ -+-=++.+|
T Consensus 93 ~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~~lI~TK 165 (213)
T d1vmaa2 93 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NVTGIILTK 165 (213)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CCCEEEEEC
T ss_pred CCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc-----CCceEEEec
Confidence 46789999999432221 111 1111 25779999999875 33333333332211 233678999
Q ss_pred CCCCCCCC-HHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 166 QDVPGALS-AEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 166 ~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
.|...... .-.+....++ |+..++ +|++++
T Consensus 166 lDe~~~~G~~l~~~~~~~~----------Pi~~i~--~Gq~v~ 196 (213)
T d1vmaa2 166 LDGTAKGGITLAIARELGI----------PIKFIG--VGEKAE 196 (213)
T ss_dssp GGGCSCTTHHHHHHHHHCC----------CEEEEE--CSSSGG
T ss_pred ccCCCcccHHHHHHHHHCC----------CEEEEe--CCCCcc
Confidence 99865422 2222222222 666666 577774
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.67 E-value=0.00037 Score=51.23 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=48.7
Q ss_pred CeEEEEEEcCCchhHH----HHHHhh--------ccCCCEEEEEEECCCCCC-HHHHHHHHHHHHhcCCCCCCcEEEEEe
Q psy12173 98 EYTLNIFELGGQENVR----RFWNTY--------FEDTDLLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIAN 164 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~----~~~~~~--------~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~n 164 (224)
+..+.++||+|...+. ..+... ....+-+++|+|++.... .......+..+ + +-=++.|
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lI~T 159 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-------G-LTGVIVT 159 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-------C-CSEEEEE
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-------C-CceEEEe
Confidence 4678999999943211 111111 135678999999997642 22222222222 1 2257899
Q ss_pred CCCCCCCC-CHHHHHhhcCcccccCcccceeEEEeecCCCCccc
Q psy12173 165 KQDVPGAL-SAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHL 207 (224)
Q Consensus 165 K~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 207 (224)
|.|..... ..-.+....+. |+..++ +|++.+
T Consensus 160 KlDet~~~G~~l~~~~~~~~----------Pi~~i~--~Gq~p~ 191 (207)
T d1okkd2 160 KLDGTAKGGVLIPIVRTLKV----------PIKFVG--VGEGPD 191 (207)
T ss_dssp CTTSSCCCTTHHHHHHHHCC----------CEEEEE--CSSSTT
T ss_pred ccCCCCCccHHHHHHHHHCC----------CEEEEe--CCCChH
Confidence 99986542 23333333333 666666 466553
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.65 E-value=0.00025 Score=52.31 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=49.3
Q ss_pred CCeEEEEEEcCCchhHH------HHHHh--hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q psy12173 97 GEYTLNIFELGGQENVR------RFWNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDV 168 (224)
Q Consensus 97 ~~~~~~l~D~~G~~~~~------~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 168 (224)
.+..+.++||+|...+. ..... ..-..+-+++|++++.... ....... .... .+. --++.||.|.
T Consensus 93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~-~~~~---~~~-~~lI~TKlDe 165 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASK-FNQA---SKI-GTIIITKMDG 165 (211)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHH-HHHH---CTT-EEEEEECTTS
T ss_pred cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhh-hhcc---cCc-ceEEEecccC
Confidence 34689999999942111 11111 1234678899999887632 2222222 2222 122 2467999998
Q ss_pred CCCCCHHHHHhhcCcccccCcccceeEEEeecCCCCcccc
Q psy12173 169 PGALSAEEVGVALDLSSISSRQHRIKLIATQAPSNLHHLH 208 (224)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 208 (224)
... .-.+...... ++.|+..++ .|+++++
T Consensus 166 t~~--~G~~l~~~~~-------~~lPi~~it--~Gq~v~D 194 (211)
T d1j8yf2 166 TAK--GGGALSAVAA-------TGATIKFIG--TGEKIDE 194 (211)
T ss_dssp CSC--HHHHHHHHHT-------TTCCEEEEE--CSSSTTC
T ss_pred CCc--ccHHHHHHHH-------HCcCEEEEe--CCCCccc
Confidence 655 2222222211 112777776 5777753
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.65 E-value=1.5e-05 Score=59.88 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=52.8
Q ss_pred ccCCCEEEEEEECCCCCC-HHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCCCHHHH-HhhcCcccccCcccceeEEE
Q psy12173 120 FEDTDLLVFVVDSADPSK-LPVAAMELKNLLGDQRLSTVPILVIANKQDVPGALSAEEV-GVALDLSSISSRQHRIKLIA 197 (224)
Q Consensus 120 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 197 (224)
..+.|.+++|+++.+|+. ...+.+++..... .+++.+||+||+||.++...++. ....+. . ...+.+++.
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~--y--~~~g~~v~~ 79 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAED--Y--RNIGYDVYL 79 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHH--H--HHHTCCEEE
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHHH--H--hhcccccee
Confidence 468899999999988754 4445554444433 48899999999999876332221 111110 1 111228999
Q ss_pred eecCCCCcccc
Q psy12173 198 TQAPSNLHHLH 208 (224)
Q Consensus 198 ~Sa~~~~gv~~ 208 (224)
+||+++.|+++
T Consensus 80 ~Sa~~~~gl~~ 90 (231)
T d1t9ha2 80 TSSKDQDSLAD 90 (231)
T ss_dssp CCHHHHTTCTT
T ss_pred eecCChhHHHH
Confidence 99999999943
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.65 E-value=1.1e-05 Score=57.65 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+||+++|++|+|||||++.+.+.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 58999999999999999999963
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.45 E-value=3.9e-05 Score=54.43 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.8
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++.++|++.|++||||||+.+.|...
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999864
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.42 E-value=3.7e-05 Score=54.38 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=21.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-.++|+++|++||||||+.+.|...
T Consensus 3 ~~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 3 LLPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999753
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.35 E-value=4.1e-05 Score=54.63 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+|++.|++|||||||+++|...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.26 E-value=0.00025 Score=52.20 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=38.6
Q ss_pred CeEEEEEEcCCchhHH----HHHHh--hccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 98 EYTLNIFELGGQENVR----RFWNT--YFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~----~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
+..+.++||+|..... ..+.. ...+.+-+++|.|.+.+..-. .....+.+.. + .-=++.+|.|....
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~---~~~~~f~~~~---~-~~~~I~TKlDe~~~ 164 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL---SVARAFDEKV---G-VTGLVLTKLDGDAR 164 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH---HHHHHHHHHT---C-CCEEEEECGGGCSS
T ss_pred cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHH---HHHHHHHhhC---C-CCeeEEeecCcccc
Confidence 4678999999933211 11111 134678899999998873222 2333332221 1 12488999997554
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.00011 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
+-++++|.+|||||||++++..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.13 E-value=0.00014 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+.++|+++|+|||||||+.+.|...
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999854
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.12 E-value=0.00013 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
++|+++|+|||||||+.+.|...
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988754
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00073 Score=51.91 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=41.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC--CCCCC-CCCCCceeEEEEEe---CCeEEEEEEcCCc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNT--SLSHN-LKPTEGFNITILQK---GEYTLNIFELGGQ 109 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~--~~~~~-~~~t~~~~~~~~~~---~~~~~~l~D~~G~ 109 (224)
+..-|.++|+.++|||+|+|+|.+..+ ..... ...|.|.-...... .+..+.++||.|.
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~ 95 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 95 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence 456889999999999999999998763 32222 23455654433332 4578999999994
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.10 E-value=0.00015 Score=52.49 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+...|+++|+|||||||+.++|...
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999864
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.09 E-value=0.00014 Score=50.35 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
|++.|++||||||+.++|...
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999998754
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.04 E-value=0.00017 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
++|+++|+|||||||+.+.|....
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998643
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.02 E-value=0.00019 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
++|+++|+|||||||+.+.|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.99 E-value=0.00021 Score=51.17 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+++|+++|+|||||||+.+.|...
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0002 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
++|+++|+|||||||..+.|...
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.96 E-value=0.00021 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-|++.|++||||||+.++|...
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.95 E-value=0.00019 Score=51.78 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.++|++.|++||||||+.+.|..+.
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999987644
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.94 E-value=0.00027 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=23.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
+.++|+++|+|||||||+.+.|..+.
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998753
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00022 Score=50.50 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
+|++.|++|+|||||++.+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999999884
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.00027 Score=49.00 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|+++|++||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.84 E-value=0.002 Score=48.52 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|++.|++|+|||++++.+...
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHhhc
Confidence 457999999999999999999853
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.78 E-value=0.00035 Score=49.17 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy12173 55 ILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~ 74 (224)
+.++|.+|||||||++++..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999975
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.76 E-value=0.00037 Score=49.65 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...-|+++|.+||||||+.+++..
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999864
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.74 E-value=0.00034 Score=49.26 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
++|+++|.+||||||+.+.+...
T Consensus 2 p~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999998888643
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.74 E-value=0.00052 Score=49.63 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
....|+++|+|||||||+.+.|....
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.68 E-value=0.00045 Score=50.26 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=28.3
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQD 167 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 167 (224)
...++.++++|..++ ....++.+..+... .+.+++++.++++
T Consensus 82 ~~~~~~~vi~d~~~~--~~~~r~~~~~~~~~---~~~~~~~~~~~~~ 123 (213)
T d1bifa1 82 SEEGGHVAVFDATNT--TRERRAMIFNFGEQ---NGYKTFFVESICV 123 (213)
T ss_dssp HTTCCSEEEEESCCC--SHHHHHHHHHHHHH---HTCEEEEEEECCC
T ss_pred HhcCCCEEEeecCCc--cHHHHHHHHHHHHh---cCCeEEEEEeecc
Confidence 345566778898876 55566666666655 3677777777775
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.00054 Score=49.73 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=21.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...-+++++|++|+|||+++..+..
T Consensus 41 ~~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 41 RTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCeEEEecCCcccHHHHHHHHH
Confidence 3456899999999999999988775
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.67 E-value=0.00045 Score=49.58 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...+-|++.|++|||||||.++|..
T Consensus 20 ~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999975
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.00053 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+.|+++|+|||||||..++|...
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999763
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.63 E-value=0.00061 Score=49.78 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-.++++|+.|||||||++.+.+..
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 26 KGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhccc
Confidence 34468999999999999999999854
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.61 E-value=0.00052 Score=48.62 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-|++.|++||||||+++.|..
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999998864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.0006 Score=51.32 Aligned_cols=29 Identities=38% Similarity=0.226 Sum_probs=24.4
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-...=+++++|+.|||||||++.+.+-.
T Consensus 25 ~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 25 SIKQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 33455689999999999999999999855
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.59 E-value=0.00075 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+.|.++|.+||||||+.+.|..
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999888874
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.56 E-value=0.00074 Score=47.37 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-|++.|.+||||||+.+.|...-
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 457777999999999999998753
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.56 E-value=0.0007 Score=49.77 Aligned_cols=27 Identities=37% Similarity=0.337 Sum_probs=23.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
|+.+.|++-|++||||||..+.|....
T Consensus 1 Mk~i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 1 MKTIQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998643
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.53 E-value=0.00063 Score=47.72 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+|+++|++||||||+.+.|...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.00065 Score=47.62 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-++++|++||||||+.+.|...
T Consensus 7 ~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35677999999999999998763
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.50 E-value=0.00071 Score=48.66 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
|+++|++|||||||+++|....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997653
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=96.47 E-value=0.0008 Score=50.64 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=24.1
Q ss_pred ccccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 48 DDIFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 48 ~~~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-...-.++++|+.|||||||++.+.+-.
T Consensus 24 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 33445689999999999999999998754
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.46 E-value=0.00076 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.+|++.|++||||||+++.+...-
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEeeccccchHHHHHHhhhc
Confidence 469999999999999999999754
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.00078 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=.++++|+.|||||||++.+.+-.
T Consensus 26 Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 26 GEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3478999999999999999998754
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.44 E-value=0.00081 Score=50.94 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...-.++++|+.|||||||++.+.+-.
T Consensus 39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 39 PAGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhccc
Confidence 344589999999999999999998754
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.00085 Score=50.78 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...=.++++|+.|||||||++.+.+-.
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 345589999999999999999998755
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.43 E-value=0.00081 Score=50.16 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..=.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCcchhhHhccCCC
Confidence 33478999999999999999888754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.42 E-value=0.00087 Score=50.25 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 56789999999999999999855
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.40 E-value=0.0011 Score=46.39 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.-|++.|++||||||+.+.|...
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.39 E-value=0.00088 Score=47.85 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-|+++|++||||||+++.|....
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999997653
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.38 E-value=0.00092 Score=51.45 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=23.1
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...=.++++|+.|||||||++.+.+-.
T Consensus 60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 60 EKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 344579999999999999999999754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.35 E-value=0.00093 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-|++.|+||+||||+.+.+...
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.35 E-value=0.001 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=.++++|+.|||||||++.+.+-.
T Consensus 32 Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 32 GEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3468999999999999999999855
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.33 E-value=0.00096 Score=48.13 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.-|+++|+|||||||+.++|....
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998754
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.32 E-value=0.001 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.||||+||||+.+.+...
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHhc
Confidence 47899999999999999998864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.30 E-value=0.0011 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.||||+||||+++.+...
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999853
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.29 E-value=0.0011 Score=47.81 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
|+++|++|||||||+++|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.0012 Score=47.16 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-|+++||+|+||+||+++|....
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred cEEEECCCCCCHHHHHHHHHHhC
Confidence 37889999999999999998643
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.24 E-value=0.0012 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=-++++|++|+|||||++.+.+-.
T Consensus 32 Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467999999999999999999865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.00081 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=-++++|+.|+|||||++.+.+-.
T Consensus 25 Gei~~iiG~nGaGKSTLl~~l~Gl~ 49 (231)
T d1l7vc_ 25 GEILHLVGPNGAGKSTLLARMAGMT 49 (231)
T ss_dssp TCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999999843
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=96.22 E-value=0.0013 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=.++++|+.|||||||++.+.+-.
T Consensus 29 Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3478999999999999999998755
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.0012 Score=49.59 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.=-++++|+.|||||||++.+.+-.
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 31 GQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp SCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCc
Confidence 3468999999999999999998754
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.21 E-value=0.0012 Score=46.55 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.|+++|++||||||+.+.|..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=96.17 E-value=0.0017 Score=48.61 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
.-.++++|+.|+|||||++.+.+-..
T Consensus 28 Gei~glvG~nGaGKSTLl~~l~G~~~ 53 (238)
T d1vpla_ 28 GEIFGLIGPNGAGKTTTLRIISTLIK 53 (238)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34679999999999999999998653
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.00071 Score=48.44 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
....|.++|.+||||||+.+.|...
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999753
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=96.11 E-value=0.00094 Score=49.71 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
=-++++|+.|||||||++.+.+-.
T Consensus 27 e~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 27 EYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 368999999999999999999865
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0015 Score=47.71 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 54 KILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
-|+++||+|||||||+++|....
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998643
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.09 E-value=0.001 Score=50.36 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=22.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...-+++++|+.|||||||++-+.+-.
T Consensus 42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 42 EKGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 345589999999999999999888754
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.03 E-value=0.0025 Score=51.16 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=19.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~ 73 (224)
...-+++++|++|+|||+++..|.
T Consensus 41 ~~k~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 41 RTKNNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHH
T ss_pred CCCCCCeEECCCCCCHHHHHHHHH
Confidence 345578999999999999986554
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.02 E-value=0.0022 Score=48.54 Aligned_cols=24 Identities=46% Similarity=0.512 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
=-++++|+.|+|||||++.+.+..
T Consensus 31 ei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 31 DVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHCCC
Confidence 357999999999999999999865
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.01 E-value=0.0017 Score=46.06 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=17.6
Q ss_pred EE-EEEcCCCCCHHHHHHHHhc
Q psy12173 54 KI-LILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i-~v~G~~~sGKSsl~~~l~~ 74 (224)
|| ++.|.+||||||+++.|..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 44 5679999999999998864
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.98 E-value=0.012 Score=40.92 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELG 107 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~ 107 (224)
.-|++-|+-|+|||||++.+...--.......||.... ......+..+.-+|.=
T Consensus 34 ~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~-~~Y~~~~~~i~H~DlY 87 (158)
T d1htwa_ 34 IMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV-EEYNIAGKMIYHFDLY 87 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE-EEEEETTEEEEEEECT
T ss_pred eEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEE-EeeccCCceEEEEEEe
Confidence 46888999999999999999865433322344554421 2223455566666654
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=95.98 E-value=0.0019 Score=48.98 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..=.++++|+.|||||||++.+.+-.
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 33478999999999999999998754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.89 E-value=0.0021 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..++++||||||||.|.+++...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 57899999999999999999864
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.86 E-value=0.0026 Score=46.96 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||++++.+...
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999988763
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.85 E-value=0.0029 Score=47.40 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998864
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.84 E-value=0.003 Score=45.20 Aligned_cols=26 Identities=35% Similarity=0.166 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
.+-|++.|.+||||||+.+.|....+
T Consensus 3 p~IIgitG~~gSGKstva~~l~~~g~ 28 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLRSWGY 28 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 56789999999999999999876543
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0026 Score=46.32 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
+-|++.|++|||||||.+.|..
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998864
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.003 Score=48.03 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...-+++++|++|+|||+++..+...
T Consensus 37 ~~k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 37 RRKNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccCCcEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999998888753
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.75 E-value=0.0027 Score=45.51 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=22.8
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.+.+-|++-|..||||||+++.|...-
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998643
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.72 E-value=0.0034 Score=46.81 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...+++.||+|+||||+++.+....
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998643
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.71 E-value=0.0013 Score=49.32 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..=.++++|+.|||||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 34478999999999999999999855
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.71 E-value=0.0033 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-+|+++||+|||||-|.++|..
T Consensus 50 sNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999975
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.70 E-value=0.0026 Score=47.70 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 52 QRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...+++.|++|+|||||++++..
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Confidence 34688999999999999999874
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.61 E-value=0.0035 Score=47.13 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..+++.|++|+|||++++.+...
T Consensus 43 ~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHH
Confidence 46999999999999999999964
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.004 Score=45.27 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
+-|++.|+|||||+|+.+.|..+.
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 367888999999999999998654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.40 E-value=0.0045 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...+++.|+||+|||++++.+...
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceeEEecCCCCCchHHHHHHHHH
Confidence 347999999999999999999874
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0051 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..+++.|+||+|||++++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHH
Confidence 4699999999999999999985
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.36 E-value=0.0048 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++.|++|+||||+++.+...
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHHH
Confidence 45899999999999999988753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.0043 Score=46.17 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++.|++|+||||+++.+...
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999888753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.0053 Score=45.00 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.++++.|++|+||||+++.+..
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHHH
Confidence 4689999999999999988764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.21 E-value=0.0037 Score=47.06 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+.+.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 455699999999999998864
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.19 E-value=0.0065 Score=44.32 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=21.7
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.....|.+.|.+||||||+.+.|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999874
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.16 E-value=0.0051 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++.|++|+||||+++.+...
T Consensus 36 ~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 36 PHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHH
Confidence 35899999999999999999864
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.10 E-value=0.0067 Score=43.71 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-|++-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988774
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.94 E-value=0.0062 Score=46.16 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
...|++.|++|+|||+|++++...-
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 4579999999999999999998753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.70 E-value=0.012 Score=42.47 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
+-|++.|..||||||+.+.|....+
T Consensus 3 ~iIgITG~igSGKStv~~~l~~~G~ 27 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTDLGV 27 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
Confidence 5689999999999999998875443
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.01 Score=43.03 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
+-|+++|..||||||+.+.|....+
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~G~ 28 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADLGI 28 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred EEEEEECCCcCCHHHHHHHHHHCCC
Confidence 4588999999999999998876554
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.011 Score=42.31 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..--+.+.|++|+|||+|...+..+.
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34467999999999999999888644
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.41 E-value=0.0054 Score=47.92 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
++++.|+||+|||+|++++..
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 799999999999999999864
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.002 Score=46.01 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy12173 55 ILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~ 73 (224)
.+++|+.||||||++.++.
T Consensus 27 tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3678999999999999986
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.011 Score=42.68 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy12173 55 ILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~ 74 (224)
|++-|..||||||+++.|..
T Consensus 5 IviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78889999999999988874
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.016 Score=44.88 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=21.2
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...+-|++.|.+||||||+.+.|..
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence 3467899999999999999888764
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.18 E-value=0.0085 Score=45.86 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=16.4
Q ss_pred EEEcCCCCCHHHHHHHHh
Q psy12173 56 LILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 56 ~v~G~~~sGKSsl~~~l~ 73 (224)
+++|+.|||||++++++.
T Consensus 28 vlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEECCTTTCSTHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 788999999999999884
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.18 E-value=0.014 Score=46.33 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...-+++.||||+|||++.+.+..
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999885
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.01 E-value=0.014 Score=42.73 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=21.9
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+...-+.+.|++|+|||+|..++...
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 44567899999999999999998754
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.97 E-value=0.019 Score=43.59 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...|++.|.+|+|||||...+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999999998654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.94 E-value=0.016 Score=42.30 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
+.+.|++|+|||.|++.+....
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999998643
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=93.86 E-value=0.018 Score=45.65 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
..-+++++||+|||||-+.++|..
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHh
Confidence 455799999999999999999864
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.011 Score=43.45 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..|++-|+.||||||+++.|...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.82 E-value=0.014 Score=46.80 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 53 RKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
=-|++.|++||||||.+..+...
T Consensus 159 GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 159 GIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCccHHHHHHhhh
Confidence 34899999999999999999874
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.77 E-value=0.017 Score=42.61 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=22.0
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
+..--+++.|++|+|||+|.-++..+.
T Consensus 34 p~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 34 ETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345578999999999999999887543
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.76 E-value=0.0094 Score=45.64 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=17.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
+.+-|++.|.+||||||+.++|..
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999987753
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=93.74 E-value=0.013 Score=45.76 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=24.5
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
.|..++|.+=|.-|+||||+++.|...-
T Consensus 2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~l 29 (331)
T d1osna_ 2 KMGVLRIYLDGAYGIGKTTAAEEFLHHF 29 (331)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred CccceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3677899999999999999999998653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.66 E-value=0.084 Score=39.61 Aligned_cols=78 Identities=21% Similarity=0.138 Sum_probs=47.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEEE
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFVV 130 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~ 130 (224)
...-+.+.|++++|||+|+-++...... .+....++|+-+.-.........+ +.|-++ ++
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~~~~q~------------------~g~~~vyidtE~~~~~~~a~~~Gv-d~d~v~-~~ 112 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVIAAAQR------------------EGKTCAFIDAEHALDPIYARKLGV-DIDNLL-CS 112 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH------------------TTCCEEEEESSCCCCHHHHHHTTC-CGGGCE-EE
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHc------------------CCCEEEEEccccccCHHHHHHhCC-CHHHEE-Ee
Confidence 4456789999999999998887754311 122356788887544332222222 223333 33
Q ss_pred ECCCCCCHHHHHHHHHHHHhc
Q psy12173 131 DSADPSKLPVAAMELKNLLGD 151 (224)
Q Consensus 131 d~~~~~s~~~~~~~~~~~~~~ 151 (224)
.+.+.++..+++..+...
T Consensus 113 ---~~~~~E~~~~~i~~l~~~ 130 (263)
T d1u94a1 113 ---QPDTGEQALEICDALARS 130 (263)
T ss_dssp ---CCSSHHHHHHHHHHHHHH
T ss_pred ---cCCCHHHHHHHHHHHHhc
Confidence 355677777777777665
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.64 E-value=0.026 Score=43.07 Aligned_cols=23 Identities=35% Similarity=0.228 Sum_probs=19.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q psy12173 51 FQRKILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~ 73 (224)
..+-|++-|.+|||||||...+.
T Consensus 26 ~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 26 CPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEeECCCCCCHHHHHHHHH
Confidence 35788999999999999987664
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.02 Score=41.58 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
=|++-|..||||||+++.|..
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377889999999998777654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.50 E-value=0.024 Score=39.99 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..-|++.|++|+||||+.-.+....
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 4578999999999999999988765
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=93.49 E-value=0.02 Score=44.48 Aligned_cols=21 Identities=29% Similarity=0.653 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy12173 55 ILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+++.|+||+|||.|.+.+...
T Consensus 126 ~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 455799999999999999864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.48 E-value=0.021 Score=41.97 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+..-+++.|+||+|||+|+.++..+
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4557789999999999999888864
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.40 E-value=0.027 Score=39.77 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
..-|++.|++|+|||++.-.|....+
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~G~ 40 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINKNH 40 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 45689999999999999999987653
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.022 Score=41.83 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-|++-|..||||||+++.|...
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5788899999999999999864
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.25 E-value=0.021 Score=45.44 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=17.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q psy12173 52 QRKILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~ 73 (224)
.++ +++|+.|+|||+++.++.
T Consensus 26 ~l~-~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 26 NFT-SIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp SEE-EEECSTTSSHHHHHHHHH
T ss_pred CEE-EEECCCCCCHHHHHHHHH
Confidence 344 688999999999999984
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=0.03 Score=43.36 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-.++++|++|+|||.|.+.+..
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHh
Confidence 3689999999999999999885
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=0.053 Score=43.36 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=21.3
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....+++|+|.+|+|||++++.+..
T Consensus 48 ~~~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 48 AEPRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHH
T ss_pred cccceEEEEeCCCCcHHHHHHHHHH
Confidence 4567899999999999999887764
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.92 E-value=0.028 Score=41.04 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
..--+++.|++|+|||+|...+..+-
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44567899999999999999998543
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.034 Score=40.79 Aligned_cols=27 Identities=15% Similarity=0.012 Sum_probs=22.6
Q ss_pred cccccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 49 DIFQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 49 ~~~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
-+..--+++.|++|+|||+|..++..+
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345567899999999999999999853
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.47 E-value=0.04 Score=38.58 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSGNT 77 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~~~ 77 (224)
...-|++.|++|+||||+.-.+....+
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~g~ 40 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKRGH 40 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 345789999999999999988887653
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.38 E-value=0.18 Score=37.89 Aligned_cols=79 Identities=19% Similarity=0.102 Sum_probs=47.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+...-+.+.|++++|||+|+-.+..... ..+....++||.+.-+........+. .|-++ +
T Consensus 58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q------------------~~g~~~vyIDtE~~~~~e~a~~~GvD-~d~il-~ 117 (269)
T d1mo6a1 58 PRGRVIEIYGPESSGKTTVALHAVANAQ------------------AAGGVAAFIDAEHALDPDYAKKLGVD-TDSLL-V 117 (269)
T ss_dssp CSSSEEEEECSSSSSHHHHHHHHHHHHH------------------HTTCEEEEEESSCCCCHHHHHHHTCC-GGGCE-E
T ss_pred ccceeEEEecCCCcHHHHHHHHHHHHHh------------------cCCCEEEEEECCccCCHHHHHHhCCC-HHHeE-E
Confidence 4456678999999999999877764221 12335678899984433322222222 33333 3
Q ss_pred EECCCCCCHHHHHHHHHHHHhc
Q psy12173 130 VDSADPSKLPVAAMELKNLLGD 151 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~ 151 (224)
+ .+++.++..+.+..+...
T Consensus 118 ~---~~~~~E~~~~~~~~l~~~ 136 (269)
T d1mo6a1 118 S---QPDTGEQALEIADMLIRS 136 (269)
T ss_dssp E---CCSSHHHHHHHHHHHHHT
T ss_pred e---cCCCHHHHHHHHHHHHhc
Confidence 3 455677777777777654
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=92.34 E-value=0.043 Score=42.80 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..++|.+=|.-|+||||+++.|...
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred ceEEEEEECCccCCHHHHHHHHHHH
Confidence 4579999999999999999999864
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.07 E-value=0.2 Score=37.51 Aligned_cols=88 Identities=19% Similarity=0.152 Sum_probs=51.4
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCceeEEEEEeCCeEEEEEEcCCchhHHHHHHhhccCCCEEEEE
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQISSGNTSLSHNLKPTEGFNITILQKGEYTLNIFELGGQENVRRFWNTYFEDTDLLVFV 129 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v 129 (224)
+...-+-+.|++++|||+|+..+...... .+....++||-+.-+........+ +.|-++ +
T Consensus 55 p~g~itei~G~~~sGKT~l~l~~~~~aqk------------------~g~~v~yiDtE~~~~~~~a~~~Gv-d~d~i~-~ 114 (268)
T d1xp8a1 55 PRGRITEIYGPESGGKTTLALAIVAQAQK------------------AGGTCAFIDAEHALDPVYARALGV-NTDELL-V 114 (268)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH------------------TTCCEEEEESSCCCCHHHHHHTTC-CGGGCE-E
T ss_pred cCceEEEEecCCccchHHHHHHHHHHHHh------------------CCCEEEEEECCccCCHHHHHHhCC-CchhEE-E
Confidence 34556788999999999999887754311 123457889887443332222222 223233 3
Q ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEE
Q psy12173 130 VDSADPSKLPVAAMELKNLLGDQRLSTVPILVIA 163 (224)
Q Consensus 130 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 163 (224)
+ .+++.++..+.+..+... ....+||+-
T Consensus 115 ~---~~~~~E~~~~~~~~l~~~---~~~~liIiD 142 (268)
T d1xp8a1 115 S---QPDNGEQALEIMELLVRS---GAIDVVVVD 142 (268)
T ss_dssp E---CCSSHHHHHHHHHHHHTT---TCCSEEEEE
T ss_pred E---cCCCHHHHHHHHHHHHhc---CCCcEEEEe
Confidence 3 455677777777777654 234455543
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.043 Score=39.80 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
=|++-|..||||||+++.|..
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999988864
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.89 E-value=0.045 Score=39.56 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=19.5
Q ss_pred ccccEEEEEcCCCCCHHHHHHHHh
Q psy12173 50 IFQRKILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 50 ~~~~~i~v~G~~~sGKSsl~~~l~ 73 (224)
+..--+.+.|++|+|||+|...+.
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 345577889999999999987765
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.84 E-value=0.048 Score=40.14 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.+++.|++|+|||++++.+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999888754
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=91.63 E-value=0.047 Score=42.43 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++|.|=|+-|+||||+++.|...
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~~ 27 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVAL 27 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred ceEEEEECCcCCCHHHHHHHHHHH
Confidence 467999999999999999999753
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.56 E-value=0.053 Score=39.74 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.|++.|..||||||+.+.|...
T Consensus 3 iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999653
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.55 E-value=0.056 Score=38.95 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-+++.|++|+|||+++..+..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999997664
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=91.38 E-value=0.045 Score=39.35 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
+.--+++.|++++|||.++..+..
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHH
Confidence 456889999999999999988775
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.15 E-value=0.11 Score=39.08 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
...-+.+.|++++|||+|++.+..-
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~~ 127 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4557889999999999999988863
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.00 E-value=0.065 Score=40.11 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-+++.|.+|+|||+|+..+..
T Consensus 37 l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 467999999999999877763
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.55 E-value=0.048 Score=41.23 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.5
Q ss_pred EEEEEcCCCCCHHHHH
Q psy12173 54 KILILGLDNSGKSTLI 69 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~ 69 (224)
.++|.|.+||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3789999999999764
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=90.35 E-value=0.06 Score=41.05 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.7
Q ss_pred EEEEEcCCCCCHHHHH
Q psy12173 54 KILILGLDNSGKSTLI 69 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~ 69 (224)
.++|.|.+||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4789999999999764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.087 Score=39.20 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy12173 54 KILILGLDNSGKSTLIKQIS 73 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~ 73 (224)
-.++.|++|+|||+|+-.+.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46789999999999987765
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.12 E-value=0.12 Score=39.83 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy12173 54 KILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
.++++|++|+|||.+.+.+...
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHH
Confidence 5789999999999999988753
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.72 E-value=0.12 Score=40.48 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.5
Q ss_pred ccEEEEEcCCCCCHHHHHHH
Q psy12173 52 QRKILILGLDNSGKSTLIKQ 71 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~ 71 (224)
..-.++.|+||+|||+++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHH
Confidence 45678889999999998754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.64 E-value=0.14 Score=38.94 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
+--|++++|++|+|||+|+..+..
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHH
Confidence 346899999999999999988875
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.83 E-value=0.16 Score=37.30 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.-+++.|++.+|||++++++.-
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHHH
Confidence 3478999999999999998874
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=87.46 E-value=0.17 Score=36.89 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy12173 54 KILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 54 ~i~v~G~~~sGKSsl~~~l~~ 74 (224)
-+++.|+..+|||++++++.-
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~l 57 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTAL 57 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhHH
Confidence 478999999999999998774
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=86.99 E-value=0.18 Score=37.21 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 52 QRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 52 ~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
..-|++.|++|+||+.+.+.+...
T Consensus 23 ~~pvlI~Ge~GtGK~~~A~~ih~~ 46 (247)
T d1ny5a2 23 ECPVLITGESGVGKEVVARLIHKL 46 (247)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCcCHHHHHHHHHHh
Confidence 446899999999999999998753
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.96 E-value=0.61 Score=33.26 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=48.8
Q ss_pred CeEEEEEEcCCchhHHHHHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEE-EEEeCCCCCCC-CCHH
Q psy12173 98 EYTLNIFELGGQENVRRFWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPIL-VIANKQDVPGA-LSAE 175 (224)
Q Consensus 98 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~-~~~~ 175 (224)
...+.++|+|+...... ...+..+|.++++...+. .++....+.+..+.+ .+.|++ ++.||.|.... ...+
T Consensus 111 ~~d~IiiD~~~~~~~~~--~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~~~~ 183 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQLDA--MSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp GCSEEEEECCSSSSHHH--HHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCCCHH
T ss_pred cCCEEEEcccccccccc--hhhhhhhhcccccccccc-eecchhhHHHHHHhh----hhhhhhhhhhcccccccchhhhH
Confidence 36799999998664433 234667999999987653 245555555544433 356655 88999987654 3344
Q ss_pred HHHhhcC
Q psy12173 176 EVGVALD 182 (224)
Q Consensus 176 ~~~~~~~ 182 (224)
..++..+
T Consensus 184 ~~~~~~~ 190 (237)
T d1g3qa_ 184 AAEDVME 190 (237)
T ss_dssp HHHHHHC
T ss_pred HHHhhcC
Confidence 4444444
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=85.97 E-value=0.23 Score=36.72 Aligned_cols=83 Identities=12% Similarity=0.038 Sum_probs=43.2
Q ss_pred eEEEEEEcCCchhHHH-HHHhhccCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCc-EEEEEeCCCCCCCCC-HH
Q psy12173 99 YTLNIFELGGQENVRR-FWNTYFEDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVP-ILVIANKQDVPGALS-AE 175 (224)
Q Consensus 99 ~~~~l~D~~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~ 175 (224)
..+.++|+|+...... ........+|.++++.+.. ..++.........+.......+.+ .-++.|+.+...... .+
T Consensus 116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~~ 194 (269)
T d1cp2a_ 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLD 194 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHH
T ss_pred CCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCccchhh
Confidence 5689999986443221 1222245688888887653 334544444433333222112333 347889988766522 23
Q ss_pred HHHhhcC
Q psy12173 176 EVGVALD 182 (224)
Q Consensus 176 ~~~~~~~ 182 (224)
++.+.+.
T Consensus 195 ~~~~~~~ 201 (269)
T d1cp2a_ 195 AFAKELG 201 (269)
T ss_dssp HHHHHHT
T ss_pred hhHhhcC
Confidence 3444444
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.77 E-value=0.38 Score=31.33 Aligned_cols=24 Identities=13% Similarity=-0.033 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
.-+.|.+.|..|+|||++.+.|..
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.97 E-value=0.4 Score=35.98 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISSG 75 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~~ 75 (224)
+--|++++|++|+|||+|+..+..+
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 3458999999999999998888643
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=82.67 E-value=0.38 Score=31.46 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=17.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy12173 53 RKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 53 ~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
...++.+++|+|||.++-.+..
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~ 30 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYA 30 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999998866554
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=80.70 E-value=0.3 Score=32.67 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=24.8
Q ss_pred cCCCEEEEEEECCCCCCHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q psy12173 121 EDTDLLVFVVDSADPSKLPVAAMELKNLLGDQRLSTVPILVIANKQDVPGA 171 (224)
Q Consensus 121 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 171 (224)
..+| ++.+|-..- |.+...++...... .++++++.+=..|=..+
T Consensus 78 ~~~d--vI~IDE~QF--f~d~i~~~~~~~~~---~g~~Viv~GLd~Df~~~ 121 (139)
T d2b8ta1 78 DETK--VIGIDEVQF--FDDRICEVANILAE---NGFVVIISGLDKNFKGE 121 (139)
T ss_dssp TTCC--EEEECSGGG--SCTHHHHHHHHHHH---TTCEEEEECCSBCTTSS
T ss_pred cCcC--EEEechhhh--cchhHHHHHHHHHh---cCceEEEEEeccccccC
Confidence 4555 444554432 33333333333333 48899999988886554
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=80.23 E-value=0.45 Score=33.29 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy12173 55 ILILGLDNSGKSTLIKQISSGN 76 (224)
Q Consensus 55 i~v~G~~~sGKSsl~~~l~~~~ 76 (224)
++|+|...||||.+..++....
T Consensus 2 iLVtGGarSGKS~~AE~l~~~~ 23 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGDA 23 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCccHHHHHHHHHhcC
Confidence 6899999999999999998654
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.14 E-value=0.48 Score=33.56 Aligned_cols=24 Identities=25% Similarity=0.108 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q psy12173 51 FQRKILILGLDNSGKSTLIKQISS 74 (224)
Q Consensus 51 ~~~~i~v~G~~~sGKSsl~~~l~~ 74 (224)
....+++.|++|+|||++...+..
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988775
|