Psyllid ID: psy12182

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------151
MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLNYNPPQISAFVLDINTQGIIQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVKPSTVEGLSGEQQEALQRLATKQSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
ccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccHHHHHHHHHHHcccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHHHHHHHcccccEEEEEEEEEEEcccccccccccccEEEEccEEcccccccccccccccccccccHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHHHHHHHHccccEEEEEEEEEEcccccccccccccEEEEEEcEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHcccccccccEEEcccccccccHHHHHccccccccccHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccHHHHHHHHHHHcccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHHHHHHHcccccEEEEEEEEEEEcccccccccccccEEEEccEEcccccccccccccccccccccEEEEEEEEcccccccccEEEcccccccccccEEEEEEEccccccccEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEEEEEcccccccccccccEEEEccEEEccccccccccccccccccccEEEEEEEEcccccccccEEEcccccccccccEEEEEEEccccccccHHHHHHHHHHHccccc
ccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHccccHHcccccccccccccccccccHHHHHHHHHHccccccccHccccccccHHEccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHHHHHccccHHHEEEEEEEEcccHHHccccccccEEEEEEEEcccccccccccEHcccHccccEEEEEEcccccccccccccEcccccccccccccEEEEHHHHHHHHHHHcHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccHHHHHHHHHHHHHHHccccHHHEEEEEEEccccHHHccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccEccccEcccccccccccHHHcccccccccHHHHcccccccccccccHHHHHHHHcccccccccccHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccHcEEEEccccccccEEEEEcccccHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHHHEHcccccccHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHccccHHcccccccccccccccccccHHHHHHHHHHccccccccHccccccccHHEccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccEEEEEccccHHHHHHHHHHHHHHHccccHHHEEEEEEEEcccHHHccccccccEEEEEEEEccccccccccEEHHcccccccEEEEEEcccccccccccEEcEEEEccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEEEEccccHHHccccccccEEEEEEEEccccccccHcHHHHHHcccccEEEEEEEcccccccccEEEccEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHcc
mgrtnlppekipwNALITLLSQsiyggkidndfDQRLLGSFLSKLFTTRSFEADFALVANvdgatrhinmpdgtrrdhFLHWieslpdrqtpswlglpnsaEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEanenkteernvdgrpawMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICsggkrqtnYHRLLLSDLVKgmlparwcrysvprgctvIQWVTDFRLRIIQLQQVSLLVSqggakelkvypvwlgglfnpeaYITATRQCIAEANGWSLEELVLDVsitdcmepekintddcsfrVVGLklqgaqcrnneLVLTSTILMDLPVTLMQQLEDEDEFAYTEanenkteernvdgrpawMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICsggkrqtnYHRLLLSDLVKgmlparwcrysvprgctvIQWVTDFRLRIIQLQQVSLLVSqggakelkvypvwlgglfnpeaYITATRQCIAEANGWSLEELVLDVsitdcmepekintddcsfrVVGLklqgaqcrnneLVLTSTIlmdlpvtlnynppqisAFVLDINTQGIIQINvfglkgipsiqnlDDEFNFFlrgkegilnvkpstveglsgEQQEALQRLAtkqstpeqcvpKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSaereldlphivehelrgnvpavlcsvpgydasgrVDDLAAELGKQIASIAIgsaegfnqadNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHslqphanfRLFLtmeinpkvpvnllragrifvfepppgikanllrtfstvpatrmmkapNERARLYFLLAWFHAIVQERLRyvplgwskfyefnesDLRVACDTLDTWidstamgrtnlppekipWNALITLLSQsiyggkidndfDQRLLGSFLSKLFTTRSFEADFALVANvdgatrhinmpdgtrrdhFLHWieslpdrqtpswlglpnsaEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEanenkteernvdgrpawMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICsggkrqtnYHRLLLSDLVKgmlparwcrysvprgctvIQWVTDFRLRIIQLQQVSLLVSqggakelkvypvwlgglfnpeaYITATRQCIAEANGWSLEELVLDVsitdcmepekintddcsfrVVGLklqgaqcrnneLVLTSTILMDLPVTLVRWVKVesetrqdklslpvylnstrtellfnvdlnitsgqdphsfyqrgglfnpeaYITATRQCIAEANGWSLEELVLDVsitdcmepekintddcsfrVVGLklqgaqcrnneLVLTSTILMDLPVTLVRWVKVesetrqdklslpvylnstrtellfnvdlnitsgqdphsFYQRGVALLTSTSLN
mgrtnlppekipWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAyteanenkteernvdgrpaWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICsggkrqtnyHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLqgaqcrnneLVLTSTILMDLPVTLMQQLEDEDEFAYteanenkteernvdgrpaWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICsggkrqtnyHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLqgaqcrnnELVLTSTILMDLPVTLNYNPPQISAFVLDINTQGIIQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVKPSTVEGLSGEQQEALQRlatkqstpeqCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIgsaegfnqADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVfepppgikanllRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAmgrtnlppekIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAyteanenkteernvdgrpaWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICsggkrqtnyHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKvesetrqdklslpvylnstrTELLFNVDLNITSGQDPHSFYQRGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKvesetrqdklslpvylnstrTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFrlriiqlqqvsllvsqGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFrlriiqlqqvsllvsqGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLNYNPPQISAFVLDINTQGIIQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVKPSTVEGLSGEQQEALQRLATKQSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFrlriiqlqqvsllvsqGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
**********IPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKM****************************AWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLMQQL*************************AWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLNYNPPQISAFVLDINTQGIIQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNV******************************PKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKM****************************AWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALL******
*****LPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLL****************************RPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCME****NTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLMQQLEDEDEFAYTEANENKT********PAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEP*KINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLNYNPPQISAFVLDINTQGIIQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVKPSTVEGLSGEQQEALQRLATKQSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLL****************************RPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCME****NTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCM******TD*CSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSL*
MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYT***********VDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLMQQLEDEDEFAYT***********VDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLNYNPPQISAFVLDINTQGIIQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVKPSTV**********************QCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYT***********VDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
****NLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQ************************GRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLNYNPPQISAFVLDINTQGIIQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVKPSTVEGLSGEQQEALQRLATKQSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQ**************************PAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
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MGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLNYNPPQISAFVLDINTQGIIQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVKPSTVEGLSGEQQEALQRLATKQSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRGVALLTSTSLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1507 2.2.26 [Sep-21-2011]
P372764639 Dynein heavy chain, cytop yes N/A 0.481 0.156 0.718 0.0
Q142044646 Cytoplasmic dynein 1 heav yes N/A 0.481 0.156 0.607 0.0
Q9JHU44644 Cytoplasmic dynein 1 heav yes N/A 0.481 0.156 0.607 0.0
P386504644 Cytoplasmic dynein 1 heav yes N/A 0.481 0.156 0.605 0.0
Q190204568 Dynein heavy chain, cytop yes N/A 0.427 0.140 0.481 0.0
P340364730 Dynein heavy chain, cytop yes N/A 0.474 0.151 0.434 1e-180
Q271714540 Dynein heavy chain, cytop N/A N/A 0.460 0.152 0.383 1e-143
P454444345 Dynein heavy chain, cytop yes N/A 0.249 0.086 0.451 1e-87
P454434367 Dynein heavy chain, cytop N/A N/A 0.258 0.089 0.427 2e-87
P787164349 Dynein heavy chain, cytop N/A N/A 0.303 0.105 0.404 3e-87
>sp|P37276|DYHC_DROME Dynein heavy chain, cytoplasmic OS=Drosophila melanogaster GN=Dhc64C PE=2 SV=2 Back     alignment and function desciption
 Score = 1120 bits (2898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/756 (71%), Positives = 626/756 (82%), Gaps = 31/756 (4%)

Query: 640  LKGIPSIQNLDDEFNFFLRGKEGILNVKPSTVEGLSGEQQEALQRLATK----------- 688
            LKG  S  NLD EFNFFLR +EG+L   P+ VEGLS EQ E++ RLA +           
Sbjct: 3878 LKGT-SESNLDAEFNFFLRSREGLL-ANPTPVEGLSAEQIESVNRLALRLPIFRKLLEKV 3935

Query: 689  -----------QSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSA 737
                       QS+PEQ VP+LW+E K+ S  A +++QLL IQA R DRV AAAH  V+ 
Sbjct: 3936 RSIPELGAWLQQSSPEQVVPQLWDESKALSPIASSVHQLLLIQAFRPDRVIAAAHNVVNT 3995

Query: 738  VFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI 797
            V GE FM +AE+ELD   +V+ +L  N PA+LCSVPG+DASGRVDDLAAE  KQI+SIAI
Sbjct: 3996 VLGEDFMPNAEQELDFTSVVDKQLNCNTPALLCSVPGFDASGRVDDLAAEQNKQISSIAI 4055

Query: 798  GSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEIN 857
            GSAEGFNQA+  IN+A ++G+WVLLKNVHLAPQWLVQLEKK+HSLQPH+ FRLFLTMEIN
Sbjct: 4056 GSAEGFNQAERAINMACKTGRWVLLKNVHLAPQWLVQLEKKMHSLQPHSGFRLFLTMEIN 4115

Query: 858  PKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQ 917
            PKVPVNLLRAGRIFVFEPPPGI+ANLLRTFSTVPA RMMK P+ERARLYFLLAWFHAIVQ
Sbjct: 4116 PKVPVNLLRAGRIFVFEPPPGIRANLLRTFSTVPAARMMKTPSERARLYFLLAWFHAIVQ 4175

Query: 918  ERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSI 977
            ERLRYVPLGW+K YEFNESDLRVACDTLDTWID+TAMGRTNLPPEK+PW+AL+TLLSQSI
Sbjct: 4176 ERLRYVPLGWAKKYEFNESDLRVACDTLDTWIDTTAMGRTNLPPEKVPWDALVTLLSQSI 4235

Query: 978  YGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGAT---RHINMPDGTRRDHFLH 1034
            YGGKIDNDFDQRLL SFL KLFT RSFEADFALVANVDGA+   RHI MPDGTRRDHFL 
Sbjct: 4236 YGGKIDNDFDQRLLTSFLKKLFTARSFEADFALVANVDGASGGLRHITMPDGTRRDHFLK 4295

Query: 1035 WIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYT--EANENKT 1092
            WIE+L DRQTPSWLGLPN+AEKVLLTTRGTDLV+KLLKMQQLED+DE AY+  + +E   
Sbjct: 4296 WIENLTDRQTPSWLGLPNNAEKVLLTTRGTDLVSKLLKMQQLEDDDELAYSVEDQSEQSA 4355

Query: 1093 EERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLR 1152
              R  DGRP+WM+TLHNSA+ WLELLPK LQ L+RTVENIKDPLYRYFEREV+SG+ LL+
Sbjct: 4356 VGRGEDGRPSWMKTLHNSATAWLELLPKNLQVLKRTVENIKDPLYRYFEREVTSGSRLLQ 4415

Query: 1153 DVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLR 1212
             VI DL+DV+LIC G K+QTN+HR +LS+LV+G++P  W RY+VP GCTVIQW+TDF  R
Sbjct: 4416 TVILDLQDVVLICQGEKKQTNHHRSMLSELVRGIIPKGWKRYTVPAGCTVIQWITDFSNR 4475

Query: 1213 IIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSI 1272
            + QLQ+VS LVSQ GAKEL+ +PVWLGGL NPEAYITATRQC+A+AN WSLEEL LDV+I
Sbjct: 4476 VQQLQKVSQLVSQAGAKELQGFPVWLGGLLNPEAYITATRQCVAQANSWSLEELALDVTI 4535

Query: 1273 TDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQD 1332
            TD     K +  DC F V GLKLQGAQC+NNEL+L STI+MDLPVT+++W+K+ SE R  
Sbjct: 4536 TDA--GLKNDQKDCCFGVTGLKLQGAQCKNNELLLASTIMMDLPVTILKWIKISSEPRIS 4593

Query: 1333 KLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRG 1368
            KL+LPVYLNSTRTELLF VDL + +GQ+ HSFY+RG
Sbjct: 4594 KLTLPVYLNSTRTELLFTVDLAVAAGQESHSFYERG 4629
Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.
Drosophila melanogaster (taxid: 7227)
>sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5 Back     alignment and function description
>sp|Q9JHU4|DYHC1_MOUSE Cytoplasmic dynein 1 heavy chain 1 OS=Mus musculus GN=Dync1h1 PE=1 SV=2 Back     alignment and function description
>sp|P38650|DYHC1_RAT Cytoplasmic dynein 1 heavy chain 1 OS=Rattus norvegicus GN=Dync1h1 PE=1 SV=1 Back     alignment and function description
>sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytoplasmic OS=Caenorhabditis elegans GN=dhc-1 PE=3 SV=1 Back     alignment and function description
>sp|P34036|DYHC_DICDI Dynein heavy chain, cytoplasmic OS=Dictyostelium discoideum GN=dhcA PE=1 SV=2 Back     alignment and function description
>sp|Q27171|DYHC_PARTE Dynein heavy chain, cytoplasmic OS=Paramecium tetraurelia GN=DHC-8 PE=2 SV=1 Back     alignment and function description
>sp|P45444|DYHC_EMENI Dynein heavy chain, cytoplasmic OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudA PE=3 SV=2 Back     alignment and function description
>sp|P45443|DYHC_NEUCR Dynein heavy chain, cytoplasmic OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-1 PE=3 SV=1 Back     alignment and function description
>sp|P78716|DYHC_FUSSO Dynein heavy chain, cytoplasmic OS=Fusarium solani subsp. pisi GN=DHC1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1507
383864986 4629 PREDICTED: dynein heavy chain, cytoplasm 0.481 0.156 0.743 0.0
383864984 4630 PREDICTED: dynein heavy chain, cytoplasm 0.481 0.156 0.743 0.0
383864988 4474 PREDICTED: dynein heavy chain, cytoplasm 0.481 0.162 0.743 0.0
307195555 3852 Dynein heavy chain, cytoplasmic [Harpegn 0.481 0.188 0.742 0.0
340708902 4641 PREDICTED: LOW QUALITY PROTEIN: dynein h 0.481 0.156 0.740 0.0
350419063 4641 PREDICTED: dynein heavy chain, cytoplasm 0.481 0.156 0.740 0.0
380028455 4628 PREDICTED: LOW QUALITY PROTEIN: dynein h 0.481 0.156 0.737 0.0
322789292 4008 hypothetical protein SINV_10605 [Solenop 0.481 0.181 0.748 0.0
3071840711347 Dynein heavy chain, cytoplasmic [Campono 0.481 0.538 0.742 0.0
91087317 4649 PREDICTED: similar to dynein heavy chain 0.482 0.156 0.723 0.0
>gi|383864986|ref|XP_003707958.1| PREDICTED: dynein heavy chain, cytoplasmic-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
 Score = 1169 bits (3025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/756 (74%), Positives = 633/756 (83%), Gaps = 30/756 (3%)

Query: 640  LKGIPSIQNLDDEFNFFLRGKEGILNVKPSTVEGLSGEQQEALQRLATK----------- 688
            LKGI +    D EF F+LRGKEG+LN++   V  LS EQQEA+ RL+ +           
Sbjct: 3867 LKGIATESTYDSEFTFYLRGKEGVLNIRGPIVPNLSSEQQEAMMRLSLRLPAFKKLAEKV 3926

Query: 689  -----------QSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSA 737
                         TPE CVPKLW+EEK  + T  AM+QLL IQA R DRV AAA + V++
Sbjct: 3927 QENTEFNSWLQSPTPETCVPKLWDEEKPLTPTGTAMHQLLIIQAFRPDRVIAAASLVVTS 3986

Query: 738  VFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI 797
              GE+FM +AE ELD   +VE+EL+ NVPA+LCSVPG+DASGRVDDLAAE GKQIASIAI
Sbjct: 3987 ALGESFMAAAESELDFASVVENELKANVPALLCSVPGFDASGRVDDLAAESGKQIASIAI 4046

Query: 798  GSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEIN 857
            GSAEGFNQAD  IN+AV++G+WVLLKNVHLAPQWLVQLEKKLHSLQPHA+FRLFLTMEIN
Sbjct: 4047 GSAEGFNQADRAINMAVKAGRWVLLKNVHLAPQWLVQLEKKLHSLQPHASFRLFLTMEIN 4106

Query: 858  PKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQ 917
            PKVPVNLLRAGRIFVFEPPPGI+ANLLRTFSTVPA+RMMKAPNERARLYFLLAWFHAIVQ
Sbjct: 4107 PKVPVNLLRAGRIFVFEPPPGIRANLLRTFSTVPASRMMKAPNERARLYFLLAWFHAIVQ 4166

Query: 918  ERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSI 977
            ERLRY PLGW+K YEFNESDLRVACDTLDTWI++TAMGRTNLPPEK+PW+AL+TLLSQ I
Sbjct: 4167 ERLRYAPLGWAKHYEFNESDLRVACDTLDTWIETTAMGRTNLPPEKVPWDALVTLLSQCI 4226

Query: 978  YGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVD---GATRHINMPDGTRRDHFLH 1034
            YGGKIDNDFDQRLL SFL KLFT RSFEADFALVAN+D   G  RHI MPDGTRRDHFL 
Sbjct: 4227 YGGKIDNDFDQRLLASFLRKLFTPRSFEADFALVANIDGLQGNQRHITMPDGTRRDHFLK 4286

Query: 1035 WIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYT-EANENKTE 1093
            WIESL DRQTPSWLGLPN+AEKVLLTTRGTDLV+KLLKMQQLEDEDE AY+ E + +   
Sbjct: 4287 WIESLSDRQTPSWLGLPNNAEKVLLTTRGTDLVSKLLKMQQLEDEDELAYSNEESLDTPR 4346

Query: 1094 ERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRD 1153
            E   DGRP+WMRTLHNSASTWL+LLPK L TL+RTVENIKDPLYRYFEREV+SGA LL+D
Sbjct: 4347 EAEADGRPSWMRTLHNSASTWLQLLPKNLATLKRTVENIKDPLYRYFEREVNSGAKLLQD 4406

Query: 1154 VISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRI 1213
            VI DLEDV+LIC G K+QTNYHR++LS+LVKG+LP  W RY+VPRGCTVIQW+TDF  R+
Sbjct: 4407 VIHDLEDVVLICQGKKKQTNYHRIMLSELVKGILPGGWRRYTVPRGCTVIQWITDFSHRV 4466

Query: 1214 IQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSIT 1273
             QLQ+VS LVSQGGAKE+K +PVWLGGL NPEAYITATRQCIA+AN WSLEEL LDV+I 
Sbjct: 4467 SQLQEVSRLVSQGGAKEIKSFPVWLGGLLNPEAYITATRQCIAQANSWSLEELQLDVTIG 4526

Query: 1274 DCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVES-ETRQD 1332
            D    + I TDDCSF V GLKLQGAQC++N+L LTSTI+ DLPVT++RW++  S + R+ 
Sbjct: 4527 DG---DNIATDDCSFAVTGLKLQGAQCKDNQLYLTSTIMTDLPVTMLRWIRSNSDDVRKG 4583

Query: 1333 KLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRG 1368
            KLSLPVYLNSTRTELLF VDLNI   QDPHSFY+RG
Sbjct: 4584 KLSLPVYLNSTRTELLFTVDLNIAPSQDPHSFYERG 4619

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383864984|ref|XP_003707957.1| PREDICTED: dynein heavy chain, cytoplasmic-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|383864988|ref|XP_003707959.1| PREDICTED: dynein heavy chain, cytoplasmic-like isoform 3 [Megachile rotundata] Back     alignment and taxonomy information
>gi|307195555|gb|EFN77430.1| Dynein heavy chain, cytoplasmic [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340708902|ref|XP_003393056.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain, cytoplasmic-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350419063|ref|XP_003492058.1| PREDICTED: dynein heavy chain, cytoplasmic-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380028455|ref|XP_003697917.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain, cytoplasmic-like [Apis florea] Back     alignment and taxonomy information
>gi|322789292|gb|EFZ14612.1| hypothetical protein SINV_10605 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307184071|gb|EFN70606.1| Dynein heavy chain, cytoplasmic [Camponotus floridanus] Back     alignment and taxonomy information
>gi|91087317|ref|XP_975584.1| PREDICTED: similar to dynein heavy chain [Tribolium castaneum] gi|270010987|gb|EFA07435.1| dynein heavy chain [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1507
FB|FBgn02617974639 Dhc64C "Dynein heavy chain 64C 0.450 0.146 0.734 6.2e-289
UNIPROTKB|F1LRT93642 Dync1h1 "Cytoplasmic dynein 1 0.449 0.185 0.630 5.5e-245
UNIPROTKB|E1BDX84646 DYNC1H1 "Uncharacterized prote 0.447 0.145 0.632 1.4e-244
UNIPROTKB|F1NVQ74646 DYNC1H1 "Uncharacterized prote 0.447 0.145 0.633 1e-243
UNIPROTKB|F1NKL44653 DYNC1H1 "Uncharacterized prote 0.447 0.145 0.633 1e-243
MGI|MGI:1031474644 Dync1h1 "dynein cytoplasmic 1 0.447 0.145 0.633 5.6e-243
UNIPROTKB|F1PGY94646 DYNC1H1 "Uncharacterized prote 0.447 0.145 0.630 1.2e-242
UNIPROTKB|Q142044646 DYNC1H1 "Cytoplasmic dynein 1 0.447 0.145 0.632 2.4e-242
RGD|25114644 Dync1h1 "dynein cytoplasmic 1 0.449 0.145 0.627 1.4e-241
ZFIN|ZDB-GENE-030131-70504643 dync1h1 "dynein, cytoplasmic 1 0.447 0.145 0.614 8.9e-231
FB|FBgn0261797 Dhc64C "Dynein heavy chain 64C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 2660 (941.4 bits), Expect = 6.2e-289, Sum P(5) = 6.2e-289
 Identities = 504/686 (73%), Positives = 580/686 (84%)

Query:   688 KQSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSA 747
             +QS+PEQ VP+LW+E K+ S  A +++QLL IQA R DRV AAAH  V+ V GE FM +A
Sbjct:  3946 QQSSPEQVVPQLWDESKALSPIASSVHQLLLIQAFRPDRVIAAAHNVVNTVLGEDFMPNA 4005

Query:   748 ERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAIGSAEGFNQAD 807
             E+ELD   +V+ +L  N PA+LCSVPG+DASGRVDDLAAE  KQI+SIAIGSAEGFNQA+
Sbjct:  4006 EQELDFTSVVDKQLNCNTPALLCSVPGFDASGRVDDLAAEQNKQISSIAIGSAEGFNQAE 4065

Query:   808 NVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRA 867
               IN+A ++G+WVLLKNVHLAPQWLVQLEKK+HSLQPH+ FRLFLTMEINPKVPVNLLRA
Sbjct:  4066 RAINMACKTGRWVLLKNVHLAPQWLVQLEKKMHSLQPHSGFRLFLTMEINPKVPVNLLRA 4125

Query:   868 GRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGW 927
             GRIFVFEPPPGI+ANLLRTFSTVPA RMMK P+ERARLYFLLAWFHAIVQERLRYVPLGW
Sbjct:  4126 GRIFVFEPPPGIRANLLRTFSTVPAARMMKTPSERARLYFLLAWFHAIVQERLRYVPLGW 4185

Query:   928 SKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFD 987
             +K YEFNESDLRVACDTLDTWID+TAMGRTNLPPEK+PW+AL+TLLSQSIYGGKIDNDFD
Sbjct:  4186 AKKYEFNESDLRVACDTLDTWIDTTAMGRTNLPPEKVPWDALVTLLSQSIYGGKIDNDFD 4245

Query:   988 QRLLGSFLSKLFTTRSFEADFALVANVDGAT---RHINMPDGTRRDHFLHWIESLPDRQT 1044
             QRLL SFL KLFT RSFEADFALVANVDGA+   RHI MPDGTRRDHFL WIE+L DRQT
Sbjct:  4246 QRLLTSFLKKLFTARSFEADFALVANVDGASGGLRHITMPDGTRRDHFLKWIENLTDRQT 4305

Query:  1045 PSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYT--EANENKTEERNVDGRPA 1102
             PSWLGLPN+AEKVLLTTRGTDLV+KLLKMQQLED+DE AY+  + +E     R  DGRP+
Sbjct:  4306 PSWLGLPNNAEKVLLTTRGTDLVSKLLKMQQLEDDDELAYSVEDQSEQSAVGRGEDGRPS 4365

Query:  1103 WMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVI 1162
             WM+TLHNSA+ WLELLPK LQ L+RTVENIKDPLYRYFEREV+SG+ LL+ VI DL+DV+
Sbjct:  4366 WMKTLHNSATAWLELLPKNLQVLKRTVENIKDPLYRYFEREVTSGSRLLQTVILDLQDVV 4425

Query:  1163 LICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFXXXXXXXXXXXXX 1222
             LIC G K+QTN+HR +LS+LV+G++P  W RY+VP GCTVIQW+TDF             
Sbjct:  4426 LICQGEKKQTNHHRSMLSELVRGIIPKGWKRYTVPAGCTVIQWITDFSNRVQQLQKVSQL 4485

Query:  1223 XXXGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEKIN 1282
                 GAKEL+ +PVWLGGL NPEAYITATRQC+A+AN WSLEEL LDV+ITD     K +
Sbjct:  4486 VSQAGAKELQGFPVWLGGLLNPEAYITATRQCVAQANSWSLEELALDVTITDA--GLKND 4543

Query:  1283 TDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDKLSLPVYLNS 1342
               DC F V GLKLQGAQC+NNEL+L STI+MDLPVT+++W+K+ SE R  KL+LPVYLNS
Sbjct:  4544 QKDCCFGVTGLKLQGAQCKNNELLLASTIMMDLPVTILKWIKISSEPRISKLTLPVYLNS 4603

Query:  1343 TRTELLFNVDLNITSGQDPHSFYQRG 1368
             TRTELLF VDL + +GQ+ HSFY+RG
Sbjct:  4604 TRTELLFTVDLAVAAGQESHSFYERG 4629
GO:0005875 "microtubule associated complex" evidence=NAS;IDA
GO:0007018 "microtubule-based movement" evidence=ISS;NAS;IDA
GO:0042623 "ATPase activity, coupled" evidence=ISS;NAS;IDA
GO:0003777 "microtubule motor activity" evidence=IDA
GO:0048477 "oogenesis" evidence=IMP;NAS
GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP;TAS
GO:0005868 "cytoplasmic dynein complex" evidence=ISS
GO:0003774 "motor activity" evidence=ISS
GO:0045169 "fusome" evidence=TAS
GO:0045478 "fusome organization" evidence=TAS
GO:0048134 "germ-line cyst formation" evidence=TAS
GO:0005938 "cell cortex" evidence=IDA
GO:0007405 "neuroblast proliferation" evidence=IMP
GO:0016319 "mushroom body development" evidence=IMP
GO:0008088 "axon cargo transport" evidence=IMP
GO:0048813 "dendrite morphogenesis" evidence=IMP
GO:0007301 "female germline ring canal formation" evidence=TAS
GO:0045172 "germline ring canal" evidence=TAS
GO:0007098 "centrosome cycle" evidence=IMP
GO:0008298 "intracellular mRNA localization" evidence=TAS
GO:0005737 "cytoplasm" evidence=IDA;NAS
GO:0007312 "oocyte nucleus migration involved in oocyte dorsal/ventral axis specification" evidence=TAS
GO:0040001 "establishment of mitotic spindle localization" evidence=TAS
GO:0005524 "ATP binding" evidence=IEA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0043148 "mitotic spindle stabilization" evidence=IMP
GO:0007067 "mitosis" evidence=IMP
GO:0046604 "positive regulation of mitotic centrosome separation" evidence=IMP
GO:0051642 "centrosome localization" evidence=IMP
GO:0030723 "ovarian fusome organization" evidence=IMP
GO:0007282 "cystoblast division" evidence=IMP
GO:0051237 "maintenance of RNA location" evidence=IDA
GO:0034501 "protein localization to kinetochore" evidence=IMP
GO:0007051 "spindle organization" evidence=IMP
GO:0051683 "establishment of Golgi localization" evidence=IMP
GO:0007349 "cellularization" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0047497 "mitochondrion transport along microtubule" evidence=IMP
GO:0005739 "mitochondrion" evidence=IDA
GO:0006886 "intracellular protein transport" evidence=IMP
GO:0048311 "mitochondrion distribution" evidence=IMP
GO:0000776 "kinetochore" evidence=IDA
GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IMP
GO:0050658 "RNA transport" evidence=IMP
GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP
GO:0040003 "chitin-based cuticle development" evidence=IGI
GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IDA
GO:0030529 "ribonucleoprotein complex" evidence=IDA
GO:2001019 "positive regulation of retrograde axon cargo transport" evidence=IMP
GO:0030286 "dynein complex" evidence=IPI
GO:0007279 "pole cell formation" evidence=IMP
GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP
UNIPROTKB|F1LRT9 Dync1h1 "Cytoplasmic dynein 1 heavy chain 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BDX8 DYNC1H1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVQ7 DYNC1H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKL4 DYNC1H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:103147 Dync1h1 "dynein cytoplasmic 1 heavy chain 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGY9 DYNC1H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q14204 DYNC1H1 "Cytoplasmic dynein 1 heavy chain 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|2511 Dync1h1 "dynein cytoplasmic 1 heavy chain 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7050 dync1h1 "dynein, cytoplasmic 1, heavy chain 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q14204DYHC1_HUMANNo assigned EC number0.60770.48100.1560yesN/A
Q9JHU4DYHC1_MOUSENo assigned EC number0.60770.48100.1561yesN/A
P38650DYHC1_RATNo assigned EC number0.60500.48100.1561yesN/A
P37276DYHC_DROMENo assigned EC number0.71820.48100.1562yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1507
pfam03028706 pfam03028, Dynein_heavy, Dynein heavy chain and re 0.0
pfam03028706 pfam03028, Dynein_heavy, Dynein heavy chain and re 5e-90
pfam03028706 pfam03028, Dynein_heavy, Dynein heavy chain and re 3e-46
pfam03028706 pfam03028, Dynein_heavy, Dynein heavy chain and re 1e-25
COG52453164 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] 4e-20
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor Back     alignment and domain information 
 Score =  663 bits (1712), Expect = 0.0
 Identities = 241/694 (34%), Positives = 353/694 (50%), Gaps = 51/694 (7%)

Query: 687  TKQSTPEQCVPKLWEEEKSFSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLS 746
              ++  E+ +P+ W++ KS      A  +LL ++ALR DR+  AA  FVS   GE F+  
Sbjct: 49   DSEAPEEEKLPQEWKDRKS------AFQKLLLLRALRPDRMTYAARNFVSEKLGEKFVEP 102

Query: 747  AERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELG--KQIASIAIGSAEGFN 804
              + LDL  I E E   + P      PG D S  V+ LA ++G  K+  S+++G  +G  
Sbjct: 103  --QPLDLSKIYE-ESSPSTPIFFILSPGVDPSKDVEKLAKKMGFGKKFHSVSLGQGQGP- 158

Query: 805  QADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQP--HANFRLFLTMEINPKVPV 862
             A+  I  A +SG WV+L+N+HLAP WL  LEKKL SL P  H +FRLFLT E  P +P+
Sbjct: 159  IAEKAIETAAKSGHWVMLQNIHLAPSWLPTLEKKLESLTPGSHPDFRLFLTAEPAPSIPI 218

Query: 863  NLLRAGRIFVFEPPPGIKANLLRTFSTV--PATRMMKAPNERARLYFLLAWFHAIVQERL 920
             LL+       EPP G+KANLLR  S+       M K P E  R+ FLL +FHA+VQER 
Sbjct: 219  GLLQNSIKITNEPPTGLKANLLRALSSFTQETLEMCKKPAEFKRILFLLCFFHAVVQERR 278

Query: 921  RYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGG 980
            ++ PLGW+K YEFNE DLR++ D LD ++D+ A       P+K+PW  L  L  + +YGG
Sbjct: 279  KFGPLGWNKSYEFNEGDLRISLDVLDNYLDANA-------PDKVPWEDLRYLFGEIMYGG 331

Query: 981  KIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIESLP 1040
            +I +D+D+RLL ++L + FT R F+ +  L     G      +P GT  + +L +IE LP
Sbjct: 332  RITDDWDRRLLRTYLEEFFTPRLFDPELELAPGDLG----FAVPPGTDYEGYLQYIEELP 387

Query: 1041 DRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGR 1100
               +P W GL  +AE   LT +   L+  LL++Q  E         + E        +  
Sbjct: 388  PESSPEWYGLHPNAEIGFLTQQTEKLIRTLLELQPREAGGSGGSGVSRE--------EVV 439

Query: 1101 PAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLED 1160
               +R +        +L P     L+RT E IKDPL+R   +E+     LL+++   L++
Sbjct: 440  KQVLRDIL---EKLPKLFPIEEIKLKRT-EEIKDPLFRVLFQEIERMNKLLKEIRRSLKE 495

Query: 1161 VILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVS 1220
            + L   G    TN    L   L KG +PA W + + P    +  WVTD   RI QLQ  +
Sbjct: 496  LDLGLKGELTMTNDLEDLAKALFKGRVPASWAKLAYPSLKPLGSWVTDLLRRIRQLQDWT 555

Query: 1221 LLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCMEPEK 1280
                       K   VWL G FNP++++TA  Q +A  N W L++L L   +T   + E 
Sbjct: 556  -------EDFGKPKTVWLSGFFNPQSFLTAIMQSVARKNKWPLDKLCLQTDVTKKEKEEF 608

Query: 1281 INTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDL----PVTLVRWVKVESETRQDKLSL 1336
             +     F V GL L+GA+      +L  +   +L    PV  V+ V  + +  +     
Sbjct: 609  DSAPRDGFYVHGLFLEGARWDGQNGLLLESRPKELFSPMPVIWVKAVPADKQEEKSVYEC 668

Query: 1337 PVYLNSTRTELLFNVDLNITSGQDPHSFYQRGGL 1370
            PVY   TR    +     + + + P S +   G+
Sbjct: 669  PVYKTETRGGTTYVFTFLLKTKEPP-SKWILAGV 701

This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained. Length = 706
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor Back     alignment and domain information
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor Back     alignment and domain information
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor Back     alignment and domain information
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1507
PF03028707 Dynein_heavy: Dynein heavy chain and region D6 of 100.0
PF03028707 Dynein_heavy: Dynein heavy chain and region D6 of 100.0
COG52453164 DYN1 Dynein, heavy chain [Cytoskeleton] 99.71
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 97.15
PF12781228 AAA_9: ATP-binding dynein motor region D5; PDB: 3V 96.31
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 95.61
PHA02244383 ATPase-like protein 93.76
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 93.5
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 93.4
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 93.28
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 89.42
COG52453164 DYN1 Dynein, heavy chain [Cytoskeleton] 87.04
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 86.5
KOG1808|consensus 1856 86.3
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 85.97
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 82.88
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella Back     alignment and domain information 
Probab=100.00  E-value=5.9e-128  Score=1247.80  Aligned_cols=664  Identities=37%  Similarity=0.663  Sum_probs=484.4

Q ss_pred             CCCCCCCCHHHHHHHHHhhcc----------------------CCCCcc-cCCcccccccccccchHHHHHHHHHHHhcC
Q psy12182        668 PSTVEGLSGEQQEALQRLATK----------------------QSTPEQ-CVPKLWEEEKSFSETAVAMYQLLFIQALRS  724 (1507)
Q Consensus       668 ~~~~~wls~~~W~~i~~L~~~----------------------~~~pe~-~~P~~w~~~~~~~~~l~~fqklllir~lRp  724 (1507)
                      +|.++||++++|.+|+.|+++                      +..||+ .+|..|+.      .+++||||||+||+||
T Consensus         6 ~p~~~wl~~~~w~~i~~L~~l~~F~~l~~~~~~~~~~W~~~~~~~~pe~~~~P~~~~~------~l~~fqklllir~lRp   79 (707)
T PF03028_consen    6 NPIPSWLSDEQWQNICALSKLPSFKGLCESIESNPEEWKQWFESDSPEEEPLPSPWEE------NLTPFQKLLLIRALRP   79 (707)
T ss_dssp             GGTTTS-HHHHHHHHHHHHC-GGGSSHHHHHHHTHHHHHHHC-SS-SS-----HHHHH------HHHHHHHHHHHHHH-C
T ss_pred             CCCcCcCCHHHHHHHHHHhCCcchHHHHHHHHhCHHHHHHHHcCCCcccccCChhhhh------cccHHHHHHHHHHhCc
Confidence            345799999999999999874                      667754 79999975      3899999999999999


Q ss_pred             CcHHHHHHHHHHhhhcccccccCCCCCChhhhhhhccCCCccEEEEeCCCCCchHHHHHHHHHhc---CceeEEeecCCc
Q psy12182        725 DRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELG---KQIASIAIGSAE  801 (1507)
Q Consensus       725 Drl~~a~~~fV~~~LG~~f~~~~~~~~dl~~~~~~~s~~~tPiifils~G~DP~~~i~~lA~~~~---~~~~~ISLG~gq  801 (1507)
                      ||+..++++||.++||.+|+++  +++|++++++ ++++++||||+++||+||+..|+++|++++   +++++||||+||
T Consensus        80 Drl~~~~~~~v~~~lg~~~~~~--~~~~l~~~~~-~s~~~~Pil~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~islG~~~  156 (707)
T PF03028_consen   80 DRLIAAMRKFVSSVLGSRFVEP--PPFDLESIYE-ESSPTTPILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISLGSGQ  156 (707)
T ss_dssp             CCHHHHHHHHHHHHH-TTTTS-------HHHHHH-CTTTTC-EEEEE-TT--THHHHHHHHHCTT-----EEEEETTSHH
T ss_pred             cHhHHHHHHHHHHHcCchhhcC--CCCCHHHHHH-hcCCCCceEEEeCCCCChHHHHHHHHHHHhhhhhheeecCCCCch
Confidence            9999999999999999999987  7899999997 899999999999999999999999999998   889999999999


Q ss_pred             CHHHHHHHHHHHhhcCcEEEeccccchhhhHHHHHHHHhccCC--CCceeEEEEcccCCCCcHHHHhcceEEEecCchhH
Q psy12182        802 GFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQP--HANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGI  879 (1507)
Q Consensus       802 ~~~~Ae~~I~~a~~~G~WVlLqN~HLa~swl~~Le~~l~~~~~--h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~gl  879 (1507)
                      +. .|+++|++|+++|+||+||||||+++||+.||++++.+..  |++|||||||++++.||++|||+|+||++|+|+|+
T Consensus       157 ~~-~a~~~l~~a~~~G~Wv~L~N~HL~~~wl~~Le~~l~~~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~E~p~gi  235 (707)
T PF03028_consen  157 GP-EAEKALKEAAKEGHWVLLQNCHLAPSWLPQLEKKLESLSPEIHPNFRLFLTSEPSPSFPISLLQSSIKVTYEPPPGI  235 (707)
T ss_dssp             HH-HHHHHHHHHHHHTSEEEEETGGGGCCCHHCHHHHHHC-SSTTSTT-EEEEEEESSTTS-HHHHHCSEEEEE---SSH
T ss_pred             HH-HHHHHHHHHhcCCeEEEcccchhHHHHHHHHHHHHhccccccccceEEEEEecCcccCCHHHHHcccceeeCChhHH
Confidence            97 9999999999999999999999999999999999999876  99999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCcchh--cCCchHHHhhhHHHHHHHHHHHHHhhccCCCcccccccCHhHHHHHHHHHHHHHHhhcCCCC
Q psy12182        880 KANLLRTFSTVPATRM--MKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRT  957 (1507)
Q Consensus       880 k~nl~r~~~~~~~~~~--~~~~~~~~rllf~L~~fHavl~ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~~  957 (1507)
                      |+||+|+|..++.+.+  +.++.++++++|+||||||||+||++|||+|||++||||++||.+|++++.++++...    
T Consensus       236 k~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l~~~~~~~~----  311 (707)
T PF03028_consen  236 KANLLRTYNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDILDNWLDESS----  311 (707)
T ss_dssp             HHHHHHHHCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHHHHHHHHCS----
T ss_pred             HHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHHHHHHhhcc----
Confidence            9999999999877765  3567899999999999999999999999999999999999999999999999998742    


Q ss_pred             CCCCCCCChHHHHHHHhhcccccccCChhHHHHHHHHHHHhccccccccccccccccCCCcccccCCCCCChHHHHHHHH
Q psy12182        958 NLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIE 1037 (1507)
Q Consensus       958 ~~~~~~ipw~~Lr~li~ei~YGGrVtd~~Drr~L~tll~~~f~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~~y~~~I~ 1037 (1507)
                         ++.|||++|+|++++++|||||+|+||+|+|++|+++||++++++++|.+++.    ...|.+|.+.++++|.+||+
T Consensus       312 ---~~~ipw~~l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~~~l~~~----~~~~~~P~~~~~~~~~~~i~  384 (707)
T PF03028_consen  312 ---PESIPWDALRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPDFQLSPD----SGSYSIPDSNSLEDYIEWIE  384 (707)
T ss_dssp             ---CCCTTHHHHHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT-EEET-----TTTEE----SSHHHHHHHHC
T ss_pred             ---ccCCcHHHHHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcchhhcccC----CCCccCCccccHHHHHHHHH
Confidence               57899999999999999999999999999999999999999999999999862    24588999999999999999


Q ss_pred             cCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccccccccCCCccchHHHHHHHHHHHHHH
Q psy12182       1038 SLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLEL 1117 (1507)
Q Consensus      1038 ~LP~~d~Pe~fGL~~NAe~~~~~~~s~~ll~~ll~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1117 (1507)
                      +||+.|+|+|||||+||++.++++++++++++|+.+|+......               ..+..+.++.+...+.+++++
T Consensus       385 ~lp~~~~p~~~GL~~na~~~~~~~~s~~ll~~l~~l~~~~~~~~---------------~~~~~s~~~~~~~~i~~l~~~  449 (707)
T PF03028_consen  385 QLPDEDPPEWFGLPPNAEISLQQQESRELLSSLLSLQPRESSSS---------------GGSSKSREEQVLSLIKELLEK  449 (707)
T ss_dssp             TS-SS--CCCCTS-TTHHHHHHHHHHHHHHHHHHHCCCTTT-------------------------HHHHCT--------
T ss_pred             hCCCCCCccccCCCccHHHHHHHHHHHHHHhhhhhccccccccc---------------ccccccchhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998754320               001122346677788889999


Q ss_pred             ChhhHHHhhh--h--hccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcccChhHHHHHHhHhcCCCcccccc
Q psy12182       1118 LPKALQTLRR--T--VENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCR 1193 (1507)
Q Consensus      1118 LP~~l~~~~~--~--~~~~~~Pl~~fl~qE~~~~n~LL~~I~~sL~~L~~al~G~~~ms~~le~~~~~L~~~~VP~~W~~ 1193 (1507)
                      +|..++....  .  .....+|+.+|+.||++++|+||+.|++||++|.++++|.++||+++++++.+|..|+||+.|.+
T Consensus       450 lp~~~~~~~~~~~~~~~~~~~Pl~~fl~qE~~~~~~LL~~I~~sL~~L~~~lkG~~~~t~~l~~l~~~L~~~~VP~~W~~  529 (707)
T PF03028_consen  450 LPQLFPIEEVKSKRPAENSNDPLNRFLEQEIERFNKLLQIIRQSLQELQKALKGEIKMTNELEALAQSLLKGQVPKSWLR  529 (707)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG--
T ss_pred             hhccCCHHHHhccCCccccCCceeeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhCCCChhHHh
Confidence            9976653211  1  13568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceEecCCccChhHHHHHHHHHHHHHhCccccceEEEEEEe
Q psy12182       1194 YSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSIT 1273 (1507)
Q Consensus      1194 ~s~ps~k~L~sWi~dL~~R~~~l~~w~~~~~~~g~~~~~p~~~wLsgff~PqaFLTA~~Q~~ARk~~~piD~L~~~~~v~ 1273 (1507)
                      ++||+.+++.+|++||.+|++|++.|..   ..+    .|.+|||||||||+|||||+||++||++++|+|+|.|.++|.
T Consensus       530 ~~~~s~~~l~~Wl~dL~~Rv~~l~~w~~---~~~----~p~~~wLs~ff~P~aFLtAlrQ~~AR~~~~~ld~L~l~~~v~  602 (707)
T PF03028_consen  530 YSYPSPKPLSSWLQDLIKRVEQLQRWAS---NSG----QPKSFWLSGFFNPQAFLTALRQEYARKNKIPLDQLTLSFEVT  602 (707)
T ss_dssp             S---SS--HHHHHHHHHHHHHHHHHHHH--------------B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE--
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHh---ccC----CceEEecccccChHHHHHHHHHHHHHhcCcCchhcceeEEEE
Confidence            9999999999999999999999999854   212    578999999999999999999999999999999999999998


Q ss_pred             ccCCCCccCCCCCeEEEEeEEEeCceecCCcceeccc----cccCCCeeEEEEEeecccCCCCcEEEeEeeccccCCeEE
Q psy12182       1274 DCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTST----ILMDLPVTLVRWVKVESETRQDKLSLPVYLNSTRTELLF 1349 (1507)
Q Consensus      1274 ~~~~~~~~~~~~~~~~I~GL~LeGA~wd~~~l~l~e~----~~~~lP~i~~~~v~~~~~~~~~~y~cPvY~t~~R~~~l~ 1349 (1507)
                      +...++...+++.|+||+||+||||+||.+..++.++    .+.+||++|+.|+........+.|.||||+|+.|++..+
T Consensus       603 ~~~~~~~~~~~~~g~~I~GL~leGA~wd~~~~~l~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~y~~PvY~~~~R~~~~~  682 (707)
T PF03028_consen  603 SSEDENIRSPPEDGVYIHGLFLEGARWDGQKGCLEESSPKSLYPPMPVIWLKPVQASPQSSDNSYECPVYKTSSREGLNF  682 (707)
T ss_dssp             ------------EEEEE-SEEEESSEEET-TCEE--SSSEEEES-EEEE-EE-----TTCGGCSEEEEEESSTT--S--E
T ss_pred             eccccccccccccceEEEeEEecccEeccccCcccCCCcccccccCceeEeccccccccCCCCEEECCceecCcCCCCeE
Confidence            7543333334566789999999999999877666553    578999999999876444566789999999999999655


Q ss_pred             EEEeccCCCCCCcceEeccccccch
Q psy12182       1350 NVDLNITSGQDPHSFYQRGGLFNPE 1374 (1507)
Q Consensus      1350 t~~l~~~s~~~~~~Wi~RGVa~~~~ 1374 (1507)
                      .+.|++|++.++++|++||||+++|
T Consensus       683 v~~l~l~~~~~~~~Wi~rGvAl~lq  707 (707)
T PF03028_consen  683 VFSLPLPTDEDPDHWILRGVALLLQ  707 (707)
T ss_dssp             EEEEEE-B-T-HHHHHTTT-EEES-
T ss_pred             EEEEEcCCCCCHHHHHHHhHHHhcC
Confidence            6666666777999999999999986

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella Back     alignment and domain information
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>KOG1808|consensus Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1507
3vkh_A3367 X-Ray Structure Of A Functional Full-Length Dynein 1e-178
3vkh_A3367 X-Ray Structure Of A Functional Full-Length Dynein 7e-20
3vkg_A3245 X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn 1e-178
3vkg_A3245 X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn 8e-20
4ai6_A2695 Dynein Motor Domain - Adp Complex Length = 2695 1e-20
3qmz_A2486 Crystal Structure Of The Cytoplasmic Dynein Heavy C 7e-20
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367 Back     alignment and structure 
Iteration: 1

 Score =  622 bits (1603), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 332/773 (42%), Positives = 472/773 (61%), Gaps = 58/773 (7%)
Query: 633  IQINVFGLKGIPSIQNLDDEFNFFLRGKEGILNVK---PSTVEGLSGEQQEAL------- 682
            +Q+ +  +KG  S +  + E++F L+G + + ++K   P     LS  QQ+ L       
Sbjct: 2606 LQLTIISVKGT-SNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQV 2664
Query: 683  -----------------QRLATKQSTPEQCVPKLW---EEEKSFSETAVA--MYQLLFIQ 720
                             ++   K    E  +P+ W   + + S  ++ +     ++L ++
Sbjct: 2665 PSFSKLVDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMK 2724
Query: 721  ALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGR 780
            A  SDRV   +H FV +VFGE F+ +  +ELD+ +IVE E++ + P +LCSVPGYDAS +
Sbjct: 2725 AFHSDRVLQYSHSFVCSVFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSVPGYDASSK 2782
Query: 781  VDDLAAELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLH 840
            VDDLA +L KQ  S AIGS EGF  A+  I  A +SG WVLLKN+HLAPQWLVQLEKKLH
Sbjct: 2783 VDDLALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLH 2842
Query: 841  SLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPN 900
            SL PH +FRLF+T EI+P +P NLLR   +F +E PPG+KANLL TF  +PATRM K P 
Sbjct: 2843 SLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPA 2902
Query: 901  ERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLP 960
            ER+R+YFLLAWFHAI+QERLRY+PLGW+KF+EFN++DLR A D++D W+D  + GR+N+ 
Sbjct: 2903 ERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNID 2962
Query: 961  PEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRH 1020
            P+KIPW A+ T+L  +IYGG+IDN+FD RLL SFL +LFT  +F  DF LV ++      
Sbjct: 2963 PDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIG----- 3017
Query: 1021 INMPDGTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLED-- 1078
            +++P+GT R HF+ WIE+LP+  TP WLGLP +AE +LL+ +   ++  L KMQ  E+  
Sbjct: 3018 LSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDG 3077
Query: 1079 EDEFAYTEANENKTEERNVDGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYR 1138
            ED+     + +  +   + D   A +R    + + W +LLPK L+ L+RT +NIKDPL+R
Sbjct: 3078 EDDQVSGSSKKESSSSSSEDKGKAKLRA---TITEWTKLLPKPLKQLKRTTQNIKDPLFR 3134
Query: 1139 YFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPR 1198
             FERE+S+G  L++ + +DL +++ + SG  + TNY R L + + KG++P  W  YSVP 
Sbjct: 3135 CFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKWYSVPE 3194
Query: 1199 GCTVIQWVTDFXXXXXXXXXXXXXXXXGGAKELKVYPVWLGGLFNPEAYITATRQCIAEA 1258
              ++  W++DF                   +      VWLGGL NPEAYITATRQ  ++ 
Sbjct: 3195 TISLSVWISDFSKRMQQLSEISESSDYSSIQ------VWLGGLLNPEAYITATRQSASQL 3248
Query: 1259 NGWSLEELVLDVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVT 1318
            NGWSLE L L  S    +  E       SF V G+ L+GA   N++L  T  +   + + 
Sbjct: 3249 NGWSLENLRLHASSLGKISSE----GGASFNVKGMALEGAVWNNDQLTPTDILSTPISIA 3304
Query: 1319 LVRWVKVES---ETRQDKLSLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRG 1368
             + W   +         KLS+PVYLN TR+ELLF++DL         ++YQR 
Sbjct: 3305 TLTWKDKDDPIFNNSSSKLSVPVYLNETRSELLFSIDLPYDQSTSKQNWYQRS 3357
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367 Back     alignment and structure
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245 Back     alignment and structure
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245 Back     alignment and structure
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695 Back     alignment and structure
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1507
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 0.0
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 2e-83
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 1e-45
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 4e-31
4akg_A2695 Glutathione S-transferase class-MU 26 kDa isozyme 3e-94
4akg_A2695 Glutathione S-transferase class-MU 26 kDa isozyme 3e-25
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
 Score =  674 bits (1740), Expect = 0.0
 Identities = 328/754 (43%), Positives = 463/754 (61%), Gaps = 53/754 (7%)

Query: 650  DDEFNFFLRGKEGILNVK---PSTVEGLSGEQQEALQRLATK------------------ 688
            + E++F L+G + + ++K   P     LS  QQ+ L  L  +                  
Sbjct: 2500 ESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDW 2559

Query: 689  -----QSTPEQC-VPKLWEEEKSFSETAV-----AMYQLLFIQALRSDRVPAAAHIFVSA 737
                 +    +  +P+ W   ++              ++L ++A  SDRV   +H FV +
Sbjct: 2560 KQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCS 2619

Query: 738  VFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLAAELGKQIASIAI 797
            VFGE F+ +  +ELD+ +IVE E++ + P +LCSVPGYDAS +VDDLA +L KQ  S AI
Sbjct: 2620 VFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQLHKQYKSFAI 2677

Query: 798  GSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEIN 857
            GS EGF  A+  I  A +SG WVLLKN+HLAPQWLVQLEKKLHSL PH +FRLF+T EI+
Sbjct: 2678 GSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSLSPHPSFRLFMTSEIH 2737

Query: 858  PKVPVNLLRAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQ 917
            P +P NLLR   +F +E PPG+KANLL TF  +PATRM K P ER+R+YFLLAWFHAI+Q
Sbjct: 2738 PALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQ 2797

Query: 918  ERLRYVPLGWSKFYEFNESDLRVACDTLDTWIDSTAMGRTNLPPEKIPWNALITLLSQSI 977
            ERLRY+PLGW+KF+EFN++DLR A D++D W+D  + GR+N+ P+KIPW A+ T+L  +I
Sbjct: 2798 ERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTI 2857

Query: 978  YGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPDGTRRDHFLHWIE 1037
            YGG+IDN+FD RLL SFL +LFT  +F  DF LV ++      +++P+GT R HF+ WIE
Sbjct: 2858 YGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIG-----LSVPEGTTRAHFMKWIE 2912

Query: 1038 SLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFAYTEANENKTEERNV 1097
            +LP+  TP WLGLP +AE +LL+ +   ++  L KMQ  E++ E        +K E  + 
Sbjct: 2913 ALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSG-SSKKESSSS 2971

Query: 1098 DGRPAWMRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISD 1157
                     L  + + W +LLPK L+ L+RT +NIKDPL+R FERE+S+G  L++ + +D
Sbjct: 2972 SSEDKGKAKLRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITND 3031

Query: 1158 LEDVILICSGGKRQTNYHRLLLSDLVKGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQ 1217
            L +++ + SG  + TNY R L + + KG++P  W  YSVP   ++  W++DF  R+ QL 
Sbjct: 3032 LANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLS 3091

Query: 1218 QVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSLEELVLDVSITDCME 1277
            ++S       + +     VWLGGL NPEAYITATRQ  ++ NGWSLE L L  S    + 
Sbjct: 3092 EIS------ESSDYSSIQVWLGGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGKIS 3145

Query: 1278 PEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESETRQDK---L 1334
             E       SF V G+ L+GA   N++L  T  +   + +  + W   +     +    L
Sbjct: 3146 SE----GGASFNVKGMALEGAVWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKL 3201

Query: 1335 SLPVYLNSTRTELLFNVDLNITSGQDPHSFYQRG 1368
            S+PVYLN TR+ELLF++DL         ++YQR 
Sbjct: 3202 SVPVYLNETRSELLFSIDLPYDQSTSKQNWYQRS 3235
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1507
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 100.0
4akg_A2695 Glutathione S-transferase class-MU 26 kDa isozyme 100.0
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 100.0
4akg_A2695 Glutathione S-transferase class-MU 26 kDa isozyme 99.67
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 84.45
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
Probab=100.00  E-value=3.9e-150  Score=1575.06  Aligned_cols=765  Identities=44%  Similarity=0.773  Sum_probs=610.7

Q ss_pred             ecccccccchhhcccccc---CChhhHhhcCcchhhHHHHHHHhhhhhhh----hhheec--CC--CCCCCcHHHHHHhh
Q psy12182        589 LQGAQCRNNELVLTSTIL---MDLPVTLNYNPPQISAFVLDINTQGIIQI----NVFGLK--GI--PSIQNLDDEFNFFL  657 (1507)
Q Consensus       589 ~~~~~~~~~~~i~~~~~~---~~l~~Rl~~L~~~~t~~vy~~v~rgLfe~----~sf~l~--~i--~~~~~~~~E~~ffL  657 (1507)
                      |+.-.-.|+.+|++++++   +++++|+++|++++|+++|.||||||||+    |+|++|  .|  ..+.++++||+|||
T Consensus      2428 L~~F~~lF~~si~~s~~~~~~~~~~~Rl~~l~~~lt~~vy~~v~RgLFekdKLlFs~~l~~~~i~~~~~~i~~~E~~flL 2507 (3245)
T 3vkg_A         2428 LRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTIISVKGTSNEIEESEWDFLL 2507 (3245)
T ss_dssp             HHHHHHHHHHHHSSCGGGSSCCCHHHHHHHHHHHHHHHHHHHHTTTSCGGGTTHHHHHHHHHHTTTSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCHHHHHHHh
Confidence            444455688999999988   89999999999999999999999999999    999998  23  46789999999999


Q ss_pred             cCCccccCCC---CCCCCCCCHHHHHHHHHhh-cc----------------------CCCCcccCC-cccccc-----cc
Q psy12182        658 RGKEGILNVK---PSTVEGLSGEQQEALQRLA-TK----------------------QSTPEQCVP-KLWEEE-----KS  705 (1507)
Q Consensus       658 ~G~~~~~~~~---~~~~~wls~~~W~~i~~L~-~~----------------------~~~pe~~~P-~~w~~~-----~~  705 (1507)
                      +|+.......   +++++|+++++|.+++.|+ .+                      +..||..+| +.|++.     +.
T Consensus      2508 ~g~~~~~~~~~~~~~~~~wl~~~~w~~i~~L~~~l~~F~~l~~~~~~~~~~W~~~~~s~~pe~~~pp~~w~~~~~~~~~~ 2587 (3245)
T 3vkg_A         2508 KGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQ 2587 (3245)
T ss_dssp             HTTTTGGGCCCCCGGGTTTCCHHHHHHHHHHHHHCGGGTTHHHHHHHTHHHHHHHTCSSCSSCCCCCTTHHHHHHHHSSC
T ss_pred             cCCccccccccccCCccccCCHHHHHHHHHHHhhChhhhhHHHHHHhCHHHHHHHhcccCcccccCcccccccccccccc
Confidence            9987654322   3457999999999999998 32                      678888776 889642     12


Q ss_pred             cccchHHHHHHHHHHHhcCCcHHHHHHHHHHhhhcccccccCCCCCChhhhhhhccCCCccEEEEeCCCCCchHHHHHHH
Q psy12182        706 FSETAVAMYQLLFIQALRSDRVPAAAHIFVSAVFGEAFMLSAERELDLPHIVEHELRGNVPAVLCSVPGYDASGRVDDLA  785 (1507)
Q Consensus       706 ~~~~l~~fqklllir~lRpDrl~~a~~~fV~~~LG~~f~~~~~~~~dl~~~~~~~s~~~tPiifils~G~DP~~~i~~lA  785 (1507)
                      +.+.+++||||||+||+||||+..|+++||.+.||.+|+++  +++||+.+|+++|++++|+|||+|||+||+..|++||
T Consensus      2588 ~~~~l~~fqkLlllr~lRpDr~~~a~~~fV~~~lG~~fv~~--~~~dl~~~~~~es~~~tPlifilSpG~DP~~~l~~lA 2665 (3245)
T 3vkg_A         2588 QSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNT--QELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLA 2665 (3245)
T ss_dssp             CCHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHSCTTTTCC----CCHHHHHHHSSCTTSCEECEECTTCCCHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCccCCC--CCCCHHHHHhccCCCCccEEEEeCCCCChHHHHHHHH
Confidence            34558999999999999999999999999999999999987  7899999996479999999999999999999999999


Q ss_pred             HHhcCceeEEeecCCcCHHHHHHHHHHHhhcCcEEEeccccchhhhHHHHHHHHhccCCCCceeEEEEcccCCCCcHHHH
Q psy12182        786 AELGKQIASIAIGSAEGFNQADNVINVAVRSGKWVLLKNVHLAPQWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLL  865 (1507)
Q Consensus       786 ~~~~~~~~~ISLG~gq~~~~Ae~~I~~a~~~G~WVlLqN~HLa~swl~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lL  865 (1507)
                      +++|.+++.||||||||...|+++|++|+++|+||+||||||+++||+.||++++++++|++|||||||+|+++||++||
T Consensus      2666 ~~~~~~~~~iSLGqgQg~~~A~~~i~~a~~~G~WV~LqNcHL~~sWl~~LEk~le~~~~h~~FRLwLTsep~~~fP~~iL 2745 (3245)
T 3vkg_A         2666 LQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSLSPHPSFRLFMTSEIHPALPANLL 2745 (3245)
T ss_dssp             HHHTCCCCCCBTTSHHHHHHHHHHHHHHHHHTCEEECBCGGGCTTTHHHHHHHHHTCCCCTTCEEECCEESCTTSCHHHH
T ss_pred             HHhCCCcEEEECCCCccHHHHHHHHHHHHHcCCEEEEechhhhHhHHHHHHHHHHccCCCCCeeEEEEecCCCCCCHHHH
Confidence            99999999999999999668999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcceEEEecCchhHHHHHHHHhccCCcchhcCCchHHHhhhHHHHHHHHHHHHHhhccCCCcccccccCHhHHHHHHHHH
Q psy12182        866 RAGRIFVFEPPPGIKANLLRTFSTVPATRMMKAPNERARLYFLLAWFHAIVQERLRYVPLGWSKFYEFNESDLRVACDTL  945 (1507)
Q Consensus       866 q~s~Kit~E~P~glk~nl~r~~~~~~~~~~~~~~~~~~rllf~L~~fHavl~ERrkfgplGWn~~YeFn~sDl~~s~~~l  945 (1507)
                      |+|+|||+|||+|+|+||+|+|..++++.++.++.++++++|+||||||||+|||||||+|||++||||++||++|+++|
T Consensus      2746 q~siKit~EpP~GlkaNl~rs~~~~~~~~~~~~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~~s~~~l 2825 (3245)
T 3vkg_A         2746 RMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSI 2825 (3245)
T ss_dssp             HTSEECCBCCCSSHHHHHHHHHTTSCHHHHTSSSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHHHHHHHH
T ss_pred             HhhhHheeCCChhHHHHHHHHHHhCCHHHhccCcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHHHHHHHHHH
Confidence            99999999999999999999999999888888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCChHHHHHHHhhcccccccCChhHHHHHHHHHHHhccccccccccccccccCCCcccccCCC
Q psy12182        946 DTWIDSTAMGRTNLPPEKIPWNALITLLSQSIYGGKIDNDFDQRLLGSFLSKLFTTRSFEADFALVANVDGATRHINMPD 1025 (1507)
Q Consensus       946 ~~~l~~~~~~~~~~~~~~ipw~~Lr~li~ei~YGGrVtd~~Drr~L~tll~~~f~~~~~~~~~~l~~~~~~~~~~~~iP~ 1025 (1507)
                      ++|+++++.|+.|++++.|||++||||+|||+|||||||+||||+|++|+++||++++++++|.++++     ..|.+|+
T Consensus      2826 ~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~~~~~~~-----~~~~~P~ 2900 (3245)
T 3vkg_A         2826 DYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPS-----IGLSVPE 2900 (3245)
T ss_dssp             HHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSSCEEEGG-----GTEECCC
T ss_pred             HHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCcccCCCC-----CCCCCCC
Confidence            99999987788888889999999999999999999999999999999999999999999999999864     3467999


Q ss_pred             CCChHHHHHHHHcCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHhhccccchhhhh-hhhcccccccc-ccCCCccch
Q psy12182       1026 GTRRDHFLHWIESLPDRQTPSWLGLPNSAEKVLLTTRGTDLVAKLLKMQQLEDEDEFA-YTEANENKTEE-RNVDGRPAW 1103 (1507)
Q Consensus      1026 ~~~~~~y~~~I~~LP~~d~Pe~fGL~~NAe~~~~~~~s~~ll~~ll~~q~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~ 1103 (1507)
                      +.++++|++||++||..|+|++||||+||++++++++++.++++|+.+||++++++.. ++++++..... +++.++   
T Consensus      2901 ~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~~~~s~~~~~~~~~~~~~~~~--- 2977 (3245)
T 3vkg_A         2901 GTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKG--- 2977 (3245)
T ss_dssp             CSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---------------CHHHHHHH---
T ss_pred             CCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccccccccccCCCc---
Confidence            9999999999999999999999999999999999999999999999999975433110 11100000000 011112   


Q ss_pred             HHHHHHHHHHHHHHChhhHHHhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcccChhHHHHHHhHh
Q psy12182       1104 MRTLHNSASTWLELLPKALQTLRRTVENIKDPLYRYFEREVSSGAALLRDVISDLEDVILICSGGKRQTNYHRLLLSDLV 1183 (1507)
Q Consensus      1104 ~~~l~~~~~~~l~~LP~~l~~~~~~~~~~~~Pl~~fl~qE~~~~n~LL~~I~~sL~~L~~al~G~~~ms~~le~~~~~L~ 1183 (1507)
                      .+.+.+++++|+++||+.++..+.......+|+++||.||++|||+|++.||+||.+|++||+|.++||+++++++++|+
T Consensus      2978 ~~~v~~~~~~~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl~ 3057 (3245)
T 3vkg_A         2978 KAKLRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSIS 3057 (3245)
T ss_dssp             HHC----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred             HHHHHHHHHHHHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHHH
Confidence            23488999999999999887655544556799999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceEecCCccChhHHHHHHHHHHHHHhCccc
Q psy12182       1184 KGMLPARWCRYSVPRGCTVIQWVTDFRLRIIQLQQVSLLVSQGGAKELKVYPVWLGGLFNPEAYITATRQCIAEANGWSL 1263 (1507)
Q Consensus      1184 ~~~VP~~W~~~s~ps~k~L~sWi~dL~~R~~~l~~w~~~~~~~g~~~~~p~~~wLsgff~PqaFLTA~~Q~~ARk~~~pi 1263 (1507)
                      +|+||+.|.+++|||.+||++|++||.+|++|++.|..   .+   ...|.+|||||||||||||||+||++||+++|||
T Consensus      3058 ~~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~W~~---~~---~~~p~~~WLsgff~Pq~FLTA~~Q~~ARk~~~pl 3131 (3245)
T 3vkg_A         3058 KGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISE---SS---DYSSIQVWLGGLLNPEAYITATRQSASQLNGWSL 3131 (3245)
T ss_dssp             --------CCSCCCSSCCHHHHHHHHHHHHHHHHHHHH---C----------CCGGGSSCHHHHHHHHHHHHHHHTC---
T ss_pred             cCCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHh---cC---CCCCceEecCCCcchHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999853   32   1257899999999999999999999999999999


Q ss_pred             cceEE-EEEEeccCCCCccCCCCCeEEEEeEEEeCceecCCcceeccccccCCCeeEEEEEeecccC---CCCcEEEeEe
Q psy12182       1264 EELVL-DVSITDCMEPEKINTDDCSFRVVGLKLQGAQCRNNELVLTSTILMDLPVTLVRWVKVESET---RQDKLSLPVY 1339 (1507)
Q Consensus      1264 D~L~~-~~~v~~~~~~~~~~~~~~~~~I~GL~LeGA~wd~~~l~l~e~~~~~lP~i~~~~v~~~~~~---~~~~y~cPvY 1339 (1507)
                      |+|.| +++|++..   .. |++ |+||+|||||||+||.+.++++++.+++||++|++|++.....   ..+.|.||||
T Consensus      3132 D~l~l~~~~V~~~~---~~-p~~-G~yI~GL~LeGA~WD~~~~~l~e~~~~~lPvi~l~~~~~~~~~~~~~~~~y~cPvY 3206 (3245)
T 3vkg_A         3132 ENLRLHASSLGKIS---SE-GGA-SFNVKGMALEGAVWNNDQLTPTDILSTPISIATLTWKDKDDPIFNNSSSKLSVPVY 3206 (3245)
T ss_dssp             ---CCCBC--------------C-CEEECSCEEESCEECSSSEECCSSSEEECCCEEECCCC---CCTTSGGGEEEEEEE
T ss_pred             ccceeeeEEEecCC---CC-CCc-eEEEeCEEEeccEecCCCceecCcccCCCCceeEEEeecccccccCCCCeEEcceE
Confidence            99999 99997532   11 445 5689999999999999999999999999999999998765422   2467999999


Q ss_pred             eccccCCeEEEEEeccCCCCCCcceEeccccccch
Q psy12182       1340 LNSTRTELLFNVDLNITSGQDPHSFYQRGGLFNPE 1374 (1507)
Q Consensus      1340 ~t~~R~~~l~t~~l~~~s~~~~~~Wi~RGVa~~~~ 1374 (1507)
                      +|+.|+++++++.|+++++.+++||++||||++|+
T Consensus      3207 kt~~R~~~l~~~~l~~~t~~~~~~Wi~rGVALl~~ 3241 (3245)
T 3vkg_A         3207 LNETRSELLFSIDLPYDQSTSKQNWYQRSVSISSW 3241 (3245)
T ss_dssp             SSTTCCCEEEEEEEEBCTTSCHHHHHTTTCEEESC
T ss_pred             ecCCCCCEEEEEEEECCCCCCHhHHHHHHHHHHcC
Confidence            99999999999999999999999999999999985
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1507
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 86.02
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 83.89
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.02  E-value=4.6  Score=41.76  Aligned_cols=119  Identities=18%  Similarity=0.298  Sum_probs=81.8

Q ss_pred             EEEEeCCCCCchHHHHHHHHHhcC------------------------ceeEEeecCCcCHHHHHHHHHHHh---hcCcE
Q psy12182        767 AVLCSVPGYDASGRVDDLAAELGK------------------------QIASIAIGSAEGFNQADNVINVAV---RSGKW  819 (1507)
Q Consensus       767 iifils~G~DP~~~i~~lA~~~~~------------------------~~~~ISLG~gq~~~~Ae~~I~~a~---~~G~W  819 (1507)
                      +||.-+||+-=+..+..+|++.+.                        .+..+.-+...+.+..+..++.+.   ..|.+
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~  116 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF  116 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSS
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcCCCCeEEEecchhcCCHHHHHHHHHHHHhccccCCC
Confidence            788888888888777778776521                        123333333344455667777643   34554


Q ss_pred             --EEeccccchh-hhHHHHHHHHhccCCCCceeEEEEcccCCCCcHHHHhcceEEEecCch--hHHHHHHHHh
Q psy12182        820 --VLLKNVHLAP-QWLVQLEKKLHSLQPHANFRLFLTMEINPKVPVNLLRAGRIFVFEPPP--GIKANLLRTF  887 (1507)
Q Consensus       820 --VlLqN~HLa~-swl~~Le~~l~~~~~h~~FRLwLTsep~~~fP~~lLq~s~Kit~E~P~--glk~nl~r~~  887 (1507)
                        ++|.++|-.. .-...|-+.++  .+.++.+++++++..+.+...|..+|..+.+.+|+  .++..+.+..
T Consensus       117 kviiIde~d~l~~~~q~~Llk~lE--~~~~~~~~il~tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~  187 (239)
T d1njfa_         117 KVYLIDEVHMLSRHSFNALLKTLE--EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL  187 (239)
T ss_dssp             EEEEEETGGGSCHHHHHHHHHHHH--SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             EEEEEECcccCCHHHHHHHHHHHh--cCCCCeEEEEEcCCccccChhHhhhhcccccccCcHHHhhhHHHHHH
Confidence              8889998653 34446767776  35678899999999999999999999999998876  3555555444
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure