Psyllid ID: psy12207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MCIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYCETGVF
Secondary Structure (PSIPRED)
cccccEEEEEcccccccccccccEEEEEEccccHHHcccccccccEEEEEccEEcccccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccccccEEEEEEEcccccHccccEEEccEEEEEccccccccccccEEEcccc
Coil and Loop (DISEMBL)
mciapiyniaggignqhipgdngiyvtkimdggaaqvdgrlqVGDKLIAVRnstvskgptlgycetgvf
Flexible Loop (DISEMBL)
MCIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAvrnstvskgptlgycetgvf
Low Complexity Region (SEG)
MCIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYCETGVF
Disordered region (IsUnstruct)
*CIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYC*****
Disordered Region (DISOPRED)
*CIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG*****VF
Disordered Region (DISEMBL)
MCIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYCETGVF
Disordered Region (DISPRO)
MCIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYCETGVF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYCETGVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
P31007	970	Disks large 1 tumor suppr	no	N/A	0.652	0.046	0.803	9e-19
Q5PYH7	881	Disks large homolog 2 OS=	yes	N/A	0.652	0.051	0.725	6e-17
Q15700	870	Disks large homolog 2 OS=	no	N/A	0.652	0.051	0.705	2e-16
Q63622	852	Disks large homolog 2 OS=	yes	N/A	0.652	0.052	0.705	4e-16
Q91XM9	852	Disks large homolog 2 OS=	yes	N/A	0.652	0.052	0.705	4e-16
Q62936	849	Disks large homolog 3 OS=	no	N/A	0.550	0.044	0.714	4e-16
P70175	849	Disks large homolog 3 OS=	no	N/A	0.550	0.044	0.714	5e-16
Q92796	817	Disks large homolog 3 OS=	no	N/A	0.550	0.046	0.714	5e-16
Q5PYH5	827	Discs large homolog 1-lik	no	N/A	0.666	0.055	0.686	9e-16
Q12959	904	Disks large homolog 1 OS=	no	N/A	0.594	0.045	0.739	1e-15

>sp|P31007|DLG1_DROME Disks large 1 tumor suppressor protein OS=Drosophila melanogaster GN=dlg1 PE=1 SV=2

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/51 (80%), Positives = 46/51 (90%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGGIGNQHIPGDNGIYVTK+MDGGAAQVDGRL +GDKLIAVR +   K
Sbjct: 342 FSIAGGIGNQHIPGDNGIYVTKLMDGGAAQVDGRLSIGDKLIAVRTNGSEK 392

During embryonic development, some isoforms are essential for proper neuronal differentiation and organization. Required for cell polarity; maintenance of apicobasal polarity. Plays a critical role at septate junctions in cellular growth control during larval development. The presence of a guanylate kinase domain suggests involvement in cellular adhesion as well as signal transduction to control cellular proliferation.
Drosophila melanogaster (taxid: 7227)

>sp|Q5PYH7|DLG2_DANRE Disks large homolog 2 OS=Danio rerio GN=dlg2 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V N T+ +
Sbjct: 262 FSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYTLEE 312

May play a role in synapse assembly and function.

Danio rerio (taxid: 7955)

>sp|Q15700|DLG2_HUMAN Disks large homolog 2 OS=Homo sapiens GN=DLG2 PE=1 SV=3

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/51 (70%), Positives = 45/51 (88%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V N ++ +
Sbjct: 205 FSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 255

Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses.

Homo sapiens (taxid: 9606)

>sp|Q63622|DLG2_RAT Disks large homolog 2 OS=Rattus norvegicus GN=Dlg2 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/51 (70%), Positives = 45/51 (88%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V N ++ +
Sbjct: 205 FSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 255

Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q91XM9|DLG2_MOUSE Disks large homolog 2 OS=Mus musculus GN=Dlg2 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/51 (70%), Positives = 45/51 (88%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V N ++ +
Sbjct: 205 FSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 255

Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses.

Mus musculus (taxid: 10090)

>sp|Q62936|DLG3_RAT Disks large homolog 3 OS=Rattus norvegicus GN=Dlg3 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 45/49 (91%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
           ++IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+ +
Sbjct: 256 FSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 304

Required for learning most likely through its role in synaptic plasticity following NMDA receptor signaling.

Rattus norvegicus (taxid: 10116)

>sp|P70175|DLG3_MOUSE Disks large homolog 3 OS=Mus musculus GN=Dlg3 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 45/49 (91%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
           ++IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+ +
Sbjct: 256 FSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 304

Required for learning most likely through its role in synaptic plasticity following NMDA receptor signaling.

Mus musculus (taxid: 10090)

>sp|Q92796|DLG3_HUMAN Disks large homolog 3 OS=Homo sapiens GN=DLG3 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 45/49 (91%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
           ++IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+ +
Sbjct: 238 FSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 286

Required for learning most likely through its role in synaptic plasticity following NMDA receptor signaling.

Homo sapiens (taxid: 9606)

>sp|Q5PYH5|DLG1L_DANRE Discs large homolog 1-like protein OS=Danio rerio GN=dlg1l PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 45/51 (88%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGG+GNQHIPGDN IYVTKI++GGAA  DGRLQ+GDKL+AV +S + +
Sbjct: 266 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKLLAVNSSCLEE 316

May play a role in synapse assembly and function.

Danio rerio (taxid: 7955)

>sp|Q12959|DLG1_HUMAN Disks large homolog 1 OS=Homo sapiens GN=DLG1 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/46 (73%), Positives = 42/46 (91%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
           ++IAGG+GNQHIPGDN IYVTKI++GGAA  DG+LQ+GDKL+AV N
Sbjct: 331 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 376

Essential multidomain scaffolding protein required for normal development (By similarity). Recruits channels, receptors and signaling molecules to discrete plasma membrane domains in polarized cells. May play a role in adherens junction assembly, signal transduction, cell proliferation, synaptogenesis and lymphocyte activation. Regulates the excitability of cardiac myocytes by modulating the functional expression of Kv4 channels. Functional regulator of Kv1.5 channel.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
307193164	372	Disks large 1 tumor suppressor protein [	0.753	0.139	0.826	6e-18
333033759	882	discs large 1 [Gryllus bimaculatus]	0.681	0.053	0.872	8e-18
383849085	946	PREDICTED: disks large 1 tumor suppresso	0.681	0.049	0.872	2e-17
24641278	816	discs large 1, isoform F [Drosophila mel	0.739	0.062	0.803	2e-17
281360698	1030	discs large 1, isoform M [Drosophila mel	0.652	0.043	0.803	2e-17
307175598	521	Disks large 1 tumor suppressor protein [	0.739	0.097	0.843	3e-17
332025041	414	Disks large 1 tumor suppressor protein [	0.681	0.113	0.893	3e-17
45554813	970	discs large 1, isoform B [Drosophila mel	0.652	0.046	0.803	4e-17
195041231	828	GH12185 [Drosophila grimshawi] gi|193900	0.652	0.054	0.823	4e-17
161077754	946	discs large 1, isoform L [Drosophila mel	0.652	0.047	0.803	4e-17

>gi|307193164|gb|EFN76069.1| Disks large 1 tumor suppressor protein [Harpegnathos saltator]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/52 (82%), Positives = 49/52 (94%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKG 58
           ++IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRL VGDKL+AVRN+ ++ G
Sbjct: 244 FSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLVVGDKLVAVRNALLTVG 295

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|333033759|dbj|BAK23256.1| discs large 1 [Gryllus bimaculatus]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 46/47 (97%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 53
           ++IAGGIGNQHIPGDNGIYVTKIMDGGAAQ+DGRL VGDKL+AVRN+
Sbjct: 286 FSIAGGIGNQHIPGDNGIYVTKIMDGGAAQIDGRLVVGDKLVAVRNT 332

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849085|ref|XP_003700177.1| PREDICTED: disks large 1 tumor suppressor protein-like [Megachile rotundata]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 46/47 (97%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 53
           ++IAGGIGNQHIPGDNGIYVTKIM+GGAAQVDGRL VGDKL+AVRN+
Sbjct: 301 FSIAGGIGNQHIPGDNGIYVTKIMEGGAAQVDGRLVVGDKLVAVRNA 347

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24641278|ref|NP_727519.1| discs large 1, isoform F [Drosophila melanogaster] gi|16076842|gb|AAL13339.1| GH01107p [Drosophila melanogaster] gi|22833084|gb|AAN09630.1| discs large 1, isoform F [Drosophila melanogaster] gi|220945278|gb|ACL85182.1| dlg1-PF [synthetic construct] gi|220955022|gb|ACL90054.1| dlg1-PF [synthetic construct]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/51 (80%), Positives = 46/51 (90%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGGIGNQHIPGDNGIYVTK+MDGGAAQVDGRL +GDKLIAVR +   K
Sbjct: 639 FSIAGGIGNQHIPGDNGIYVTKLMDGGAAQVDGRLSIGDKLIAVRTNGSEK 689

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281360698|ref|NP_001162718.1| discs large 1, isoform M [Drosophila melanogaster] gi|272506051|gb|ACZ95253.1| discs large 1, isoform M [Drosophila melanogaster]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/51 (80%), Positives = 46/51 (90%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGGIGNQHIPGDNGIYVTK+MDGGAAQVDGRL +GDKLIAVR +   K
Sbjct: 580 FSIAGGIGNQHIPGDNGIYVTKLMDGGAAQVDGRLSIGDKLIAVRTNGSEK 630

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175598|gb|EFN65508.1| Disks large 1 tumor suppressor protein [Camponotus floridanus]

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/51 (84%), Positives = 47/51 (92%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRL VGDKL+AVRN+   K
Sbjct: 193 FSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLVVGDKLVAVRNALFYK 243

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025041|gb|EGI65228.1| Disks large 1 tumor suppressor protein [Acromyrmex echinatior]

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/47 (89%), Positives = 46/47 (97%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 53
           ++IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRL VGDKL+AVRN+
Sbjct: 214 FSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLVVGDKLVAVRNA 260

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45554813|ref|NP_996406.1| discs large 1, isoform B [Drosophila melanogaster] gi|51704269|sp|P31007.2|DLG1_DROME RecName: Full=Disks large 1 tumor suppressor protein gi|45446905|gb|AAS65308.1| discs large 1, isoform B [Drosophila melanogaster]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/51 (80%), Positives = 46/51 (90%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGGIGNQHIPGDNGIYVTK+MDGGAAQVDGRL +GDKLIAVR +   K
Sbjct: 342 FSIAGGIGNQHIPGDNGIYVTKLMDGGAAQVDGRLSIGDKLIAVRTNGSEK 392

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195041231|ref|XP_001991213.1| GH12185 [Drosophila grimshawi] gi|193900971|gb|EDV99837.1| GH12185 [Drosophila grimshawi]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/51 (82%), Positives = 46/51 (90%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGGIGNQHIPGDNGIYVTK+MDGGAAQVDGRL +GDKLIAVR S   K
Sbjct: 196 FSIAGGIGNQHIPGDNGIYVTKLMDGGAAQVDGRLSIGDKLIAVRTSAGEK 246

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161077754|ref|NP_001096956.1| discs large 1, isoform L [Drosophila melanogaster] gi|158031793|gb|ABW09395.1| discs large 1, isoform L [Drosophila melanogaster]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/51 (80%), Positives = 46/51 (90%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++IAGGIGNQHIPGDNGIYVTK+MDGGAAQVDGRL +GDKLIAVR +   K
Sbjct: 291 FSIAGGIGNQHIPGDNGIYVTKLMDGGAAQVDGRLSIGDKLIAVRTNGSEK 341

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
FB|FBgn0001624	970	dlg1 "discs large 1" [Drosophi	0.739	0.052	0.803	9.2e-17
ZFIN|ZDB-GENE-050221-3	881	dlg2 "discs, large (Drosophila	0.739	0.057	0.725	3.2e-15
UNIPROTKB|E1BLW4	817	DLG3 "Uncharacterized protein"	0.710	0.059	0.714	6e-15
UNIPROTKB|Q92796	817	DLG3 "Disks large homolog 3" [	0.710	0.059	0.714	6e-15
UNIPROTKB|F1NB97	829	Gga.50675 "Uncharacterized pro	0.710	0.059	0.714	6.2e-15
MGI|MGI:1888986	849	Dlg3 "discs, large homolog 3 (	0.710	0.057	0.714	6.4e-15
RGD|68423	849	Dlg3 "discs, large homolog 3 (	0.710	0.057	0.714	6.4e-15
UNIPROTKB|F1M907	767	Dlg2 "Disks large homolog 2" [	0.739	0.066	0.705	7e-15
MGI|MGI:1344351	852	Dlg2 "discs, large homolog 2 (	0.739	0.059	0.705	8.2e-15
RGD|619895	852	Dlg2 "discs, large homolog 2 (	0.739	0.059	0.705	8.2e-15

FB|FBgn0001624 dlg1 "discs large 1" [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 9.2e-17, P = 9.2e-17
 Identities = 41/51 (80%), Positives = 46/51 (90%)

Query:     7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
             ++IAGGIGNQHIPGDNGIYVTK+MDGGAAQVDGRL +GDKLIAVR +   K
Sbjct:   342 FSIAGGIGNQHIPGDNGIYVTKLMDGGAAQVDGRLSIGDKLIAVRTNGSEK 392

GO:0005886 "plasma membrane" evidence=IDA;IMP;NAS

GO:0005918 "septate junction" evidence=NAS;TAS

GO:0007391 "dorsal closure" evidence=NAS;TAS

GO:0008104 "protein localization" evidence=IMP;TAS

GO:0007268 "synaptic transmission" evidence=IMP

GO:0004385 "guanylate kinase activity" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0005856 "cytoskeleton" evidence=NAS

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IGI

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0008283 "cell proliferation" evidence=TAS

GO:0016335 "morphogenesis of larval imaginal disc epithelium" evidence=TAS

GO:0016336 "establishment or maintenance of polarity of larval imaginal disc epithelium" evidence=NAS;TAS

GO:0016333 "morphogenesis of follicular epithelium" evidence=IMP

GO:0030710 "regulation of border follicle cell delamination" evidence=TAS

GO:0005938 "cell cortex" evidence=IDA

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=TAS

GO:0008105 "asymmetric protein localization" evidence=IMP;TAS

GO:0007399 "nervous system development" evidence=IMP

GO:0045175 "basal protein localization" evidence=NAS;IMP

GO:0045179 "apical cortex" evidence=IDA

GO:0005198 "structural molecule activity" evidence=TAS

GO:0045196 "establishment or maintenance of neuroblast polarity" evidence=TAS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=NAS;TAS

GO:0002009 "morphogenesis of an epithelium" evidence=TAS

GO:0043195 "terminal bouton" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0019991 "septate junction assembly" evidence=TAS

GO:0042127 "regulation of cell proliferation" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0051726 "regulation of cell cycle" evidence=NAS

GO:0005154 "epidermal growth factor receptor binding" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0016323 "basolateral plasma membrane" evidence=TAS

GO:0045202 "synapse" evidence=IDA;TAS

GO:0045167 "asymmetric protein localization involved in cell fate determination" evidence=TAS

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0051294 "establishment of spindle orientation" evidence=IMP

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0008049 "male courtship behavior" evidence=IMP

GO:0045475 "locomotor rhythm" evidence=IMP

GO:0007617 "mating behavior" evidence=IMP

GO:0046956 "positive phototaxis" evidence=IMP

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005920 "smooth septate junction" evidence=IDA

ZFIN|ZDB-GENE-050221-3 dlg2 "discs, large (Drosophila) homolog 2" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query:     7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
             ++IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V N T+ +
Sbjct:   262 FSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYTLEE 312

GO:0010923 "negative regulation of phosphatase activity" evidence=ISS

UNIPROTKB|E1BLW4 DLG3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 6.0e-15, P = 6.0e-15
 Identities = 35/49 (71%), Positives = 45/49 (91%)

Query:     7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
             ++IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+ +
Sbjct:   238 FSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 286

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001736 "establishment of planar polarity" evidence=IEA

UNIPROTKB|Q92796 DLG3 "Disks large homolog 3" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 6.0e-15, P = 6.0e-15
 Identities = 35/49 (71%), Positives = 45/49 (91%)

Query:     7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
             ++IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+ +
Sbjct:   238 FSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 286

GO:0001736 "establishment of planar polarity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0035255 "ionotropic glutamate receptor binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043198 "dendritic shaft" evidence=IEA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=NAS

GO:0004385 "guanylate kinase activity" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0010923 "negative regulation of phosphatase activity" evidence=IDA

GO:0019902 "phosphatase binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

UNIPROTKB|F1NB97 Gga.50675 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 6.2e-15, P = 6.2e-15
 Identities = 35/49 (71%), Positives = 45/49 (91%)

Query:     7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
             ++IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+ +
Sbjct:   237 FSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 285

GO:0001736 "establishment of planar polarity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA

MGI|MGI:1888986 Dlg3 "discs, large homolog 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 201 (75.8 bits), Expect = 6.4e-15, P = 6.4e-15
 Identities = 35/49 (71%), Positives = 45/49 (91%)

Query:     7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
             ++IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+ +
Sbjct:   256 FSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 304

GO:0001736 "establishment of planar polarity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0005923 "tight junction" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO

GO:0014069 "postsynaptic density" evidence=ISO

GO:0019902 "phosphatase binding" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030426 "growth cone" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0032281 "alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex" evidence=IDA

GO:0035255 "ionotropic glutamate receptor binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0045202 "synapse" evidence=ISO

RGD|68423 Dlg3 "discs, large homolog 3 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 201 (75.8 bits), Expect = 6.4e-15, P = 6.4e-15
 Identities = 35/49 (71%), Positives = 45/49 (91%)

Query:     7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
             ++IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+ +
Sbjct:   256 FSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 304

GO:0001736 "establishment of planar polarity" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0005911 "cell-cell junction" evidence=ISO

GO:0005923 "tight junction" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO;ISS

GO:0014069 "postsynaptic density" evidence=IDA;TAS

GO:0019902 "phosphatase binding" evidence=ISO;ISS

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0019904 "protein domain specific binding" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0030426 "growth cone" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0032281 "alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex" evidence=ISO

GO:0035255 "ionotropic glutamate receptor binding" evidence=IPI

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IEA;ISO

GO:0045202 "synapse" evidence=IDA

UNIPROTKB|F1M907 Dlg2 "Disks large homolog 2" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 7.0e-15, P = 7.0e-15
 Identities = 36/51 (70%), Positives = 45/51 (88%)

Query:     7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
             ++IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V N ++ +
Sbjct:   102 FSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 152

GO:0007268 "synaptic transmission" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0044224 "juxtaparanode region of axon" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

MGI|MGI:1344351 Dlg2 "discs, large homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 200 (75.5 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 36/51 (70%), Positives = 45/51 (88%)

Query:     7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
             ++IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V N ++ +
Sbjct:   205 FSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 255

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0019233 "sensory perception of pain" evidence=IMP

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0030054 "cell junction" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043113 "receptor clustering" evidence=ISO

GO:0044224 "juxtaparanode region of axon" evidence=ISO;IDA

GO:0045161 "neuronal ion channel clustering" evidence=ISO

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=ISO

RGD|619895 Dlg2 "discs, large homolog 2 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 36/51 (70%), Positives = 45/51 (88%)

Query:     7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
             ++IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V N ++ +
Sbjct:   205 FSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 255

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007268 "synaptic transmission" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=TAS;IPI

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO;ISS

GO:0014069 "postsynaptic density" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0019233 "sensory perception of pain" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0030054 "cell junction" evidence=IEA;ISO

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0030425 "dendrite" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043113 "receptor clustering" evidence=IMP

GO:0044224 "juxtaparanode region of axon" evidence=ISO;IDA

GO:0045161 "neuronal ion channel clustering" evidence=IMP

GO:0045211 "postsynaptic membrane" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5PYH7	DLG2_DANRE	No assigned EC number	0.7254	0.6521	0.0510	yes	N/A
Q91XM9	DLG2_MOUSE	No assigned EC number	0.7058	0.6521	0.0528	yes	N/A
Q63622	DLG2_RAT	No assigned EC number	0.7058	0.6521	0.0528	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	69
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	2e-05
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-04
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	0.001

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 38.0 bits (89), Expect = 2e-05
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 19 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           GD GI+V++++ GGAA+  G LQ GD+++++    +  
Sbjct: 21 DGDPGIFVSEVLPGGAAEAGG-LQEGDRILSINGQDLEN 58

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 35.2 bits (82), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
            GI+V+++  GG A+  G L+VGD+++ V
Sbjct: 25 GGGIFVSRVEPGGPAE-RGGLRVGDRILEV 53

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
            G+ V+ ++ G  A   G L+VGD ++ V
Sbjct: 25 GGGVVVSSVVPGSPAAKAG-LRVGDVILEV 53

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.32
KOG3553|consensus	124		99.32
KOG3550|consensus	207		99.31
KOG3209|consensus	984		99.08
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.03
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.02
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.91
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.91
KOG3571|consensus	626		98.79
KOG3551|consensus	506		98.77
KOG3209|consensus	984		98.75
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.69
KOG3580|consensus	1027		98.66
KOG1892|consensus	1629		98.64
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.63
KOG3549|consensus	505		98.62
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.52
KOG3651|consensus	429		98.51
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.5
KOG3552|consensus	1298		98.47
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.46
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.32
KOG3606|consensus	358		98.3
KOG3580|consensus	1027		98.29
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.17
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.13
PRK10139	455	serine endoprotease; Provisional	98.1
PRK10942	473	serine endoprotease; Provisional	98.09
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.05
PRK10898	353	serine endoprotease; Provisional	98.05
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.04
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.03
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.02
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.02
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.01
PRK10139	455	serine endoprotease; Provisional	98.0
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.98
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.96
PRK10942	473	serine endoprotease; Provisional	97.9
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.84
KOG3542|consensus	1283		97.84
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.75
PRK11186	667	carboxy-terminal protease; Provisional	97.65
KOG3605|consensus	829		97.52
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.51
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	97.23
KOG0609|consensus	542		97.0
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	96.97
KOG3605|consensus	829		96.96
COG3975	558	Predicted protease with the C-terminal PDZ domain	96.94
KOG3129|consensus	231		96.84
KOG1320|consensus	473		96.53
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	95.7
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	95.35
KOG3938|consensus	334		95.31
PRK09681	276	putative type II secretion protein GspC; Provision	95.28
KOG1738|consensus	638		93.62
KOG3532|consensus	1051		93.53
PF12812	78	PDZ_1: PDZ-like domain	93.12
KOG1421|consensus	955		92.63
KOG2921|consensus	484		91.75
COG0750	375	Predicted membrane-associated Zn-dependent proteas	90.2
KOG0606|consensus	1205		89.8
COG3031	275	PulC Type II secretory pathway, component PulC [In	85.72

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.32  E-value=4.4e-12  Score=70.15  Aligned_cols=53  Identities=25%  Similarity=0.559  Sum_probs=48.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+..    ..++||+.+.++|||+++| |++||+|++|||+++.++++
T Consensus        10 ~~lG~~l~~~~~~~----~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~   62 (81)
T PF00595_consen   10 GPLGFTLRGGSDND----EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSH   62 (81)
T ss_dssp             SBSSEEEEEESTSS----SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBH
T ss_pred             CCcCEEEEecCCCC----cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCH
Confidence            57999999998875    2489999999999999999 99999999999999999987

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3553|consensus

Probab=99.32  E-value=2.7e-12  Score=75.37  Aligned_cols=56  Identities=30%  Similarity=0.538  Sum_probs=48.7

Q ss_pred             cCceEEecCCCC-----CCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGN-----QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~-----~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+||.|-||++.     |....+.++||++|.++|||+.+| |+.+|+|+++||-+++=+++
T Consensus        36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTH   96 (124)
T KOG3553|consen   36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTH   96 (124)
T ss_pred             EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEh
Confidence            479999999975     335567899999999999999999 99999999999998875554

>KOG3550|consensus

Probab=99.31  E-value=4.1e-12  Score=79.59  Aligned_cols=53  Identities=30%  Similarity=0.547  Sum_probs=48.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||+...+     +|||++++|+|.|++-|.|+.||++++|||.+++.-.+
T Consensus       101 eglgfnvmggkeqns-----piyisriipggvadrhgglkrgdqllsvngvsvege~h  153 (207)
T KOG3550|consen  101 EGLGFNVMGGKEQNS-----PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHH  153 (207)
T ss_pred             cccceeeccCcccCC-----ceEEEeecCCccccccCcccccceeEeecceeecchhh
Confidence            479999999999887     99999999999999999999999999999999986443

>KOG3209|consensus

Probab=99.08  E-value=1.4e-10  Score=85.47  Aligned_cols=56  Identities=21%  Similarity=0.392  Sum_probs=51.9

Q ss_pred             CCcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207          2 CIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus         2 ~~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+.+||+|.||.....     ++||-++.++|||.++||+++||+|++|||++-.++++-+
T Consensus       908 ~kGFGFSiRGGreynM-----~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~r  963 (984)
T KOG3209|consen  908 AKGFGFSIRGGREYNM-----DLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDR  963 (984)
T ss_pred             ccccceEeeccccccc-----ceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHH
Confidence            4689999999988777     8999999999999999999999999999999999999843

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.03  E-value=2e-09  Score=58.83  Aligned_cols=52  Identities=29%  Similarity=0.551  Sum_probs=44.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++....     .+++|..+.+++||++++ |++||+|++||+.++.+++.
T Consensus        12 ~~~G~~~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~   63 (82)
T cd00992          12 GGLGFSLRGGKDSG-----GGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTH   63 (82)
T ss_pred             CCcCEEEeCcccCC-----CCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCH
Confidence            57899998776542     389999999999999988 99999999999999985443

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.02  E-value=1.9e-09  Score=57.62  Aligned_cols=48  Identities=31%  Similarity=0.502  Sum_probs=42.5

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .+||++.+..+       .+++|+.+.+++||+.+| |++||+|++||++++.+.+
T Consensus         2 ~~G~~~~~~~~-------~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~   49 (70)
T cd00136           2 GLGFSIRGGTE-------GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLT   49 (70)
T ss_pred             CccEEEecCCC-------CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence            47888887665       389999999999999988 9999999999999999884

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.91  E-value=3.4e-09  Score=58.76  Aligned_cols=40  Identities=30%  Similarity=0.522  Sum_probs=35.6

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|..+.+++||+++| |++||.|++|||+++.+...+.
T Consensus        14 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~   53 (82)
T PF13180_consen   14 GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSSEDLV   53 (82)
T ss_dssp             SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSHHHHH
T ss_pred             CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCHHHHH
Confidence            489999999999999999 9999999999999998776643

...

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.91  E-value=8.8e-09  Score=56.20  Aligned_cols=51  Identities=25%  Similarity=0.490  Sum_probs=43.1

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+||.+..+....     .+++|..+.++++|+++| |++||+|++||++++.+.+.
T Consensus        13 ~~G~~~~~~~~~~-----~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~   63 (85)
T smart00228       13 GLGFSLVGGKDEG-----GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTH   63 (85)
T ss_pred             cccEEEECCCCCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            5778777654322     389999999999999999 99999999999999998766

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3571|consensus

Probab=98.79  E-value=8.8e-09  Score=73.87  Aligned_cols=54  Identities=35%  Similarity=0.598  Sum_probs=47.9

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .||++|+|=....   ++.+|||..+.++|+-+.+||+.+||.|++||.++++|++.
T Consensus       262 fLGiSivgqsn~r---gDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSN  315 (626)
T KOG3571|consen  262 FLGISIVGQSNAR---GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSN  315 (626)
T ss_pred             cceeEeecccCcC---CCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCc
Confidence            5899999844332   45699999999999999999999999999999999999987

>KOG3551|consensus

Probab=98.77  E-value=3.4e-09  Score=74.15  Aligned_cols=52  Identities=29%  Similarity=0.435  Sum_probs=50.0

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .||++|.||++++.     +|.|++++++-+|++.+.|..||.|++|||.++.+.++
T Consensus        97 GLGISIKGGreNkM-----PIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtH  148 (506)
T KOG3551|consen   97 GLGISIKGGRENKM-----PILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATH  148 (506)
T ss_pred             cceEEeecCcccCC-----ceehhHhccccccccccceeeccEEEEecchhhhhcch
Confidence            68999999999998     99999999999999999999999999999999998887

>KOG3209|consensus

Probab=98.75  E-value=1.6e-08  Score=74.91  Aligned_cols=53  Identities=32%  Similarity=0.458  Sum_probs=49.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      -.+||+|.||.+...     +|||-.+++.|+|+++|||+.||+|+.|+|+++...|+
T Consensus       660 sGFGFRiLGG~ep~q-----pi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH  712 (984)
T KOG3209|consen  660 SGFGFRILGGDEPGQ-----PIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSH  712 (984)
T ss_pred             cccceEEecCCCCCC-----eeEEeeeeecccccccCcccCCCeEEEecCeeccCccH
Confidence            368999999998765     99999999999999999999999999999999999887

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.69  E-value=4.9e-08  Score=53.91  Aligned_cols=41  Identities=15%  Similarity=0.338  Sum_probs=36.7

Q ss_pred             CCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        20 ~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ...+++|..+.+++||+++| |++||+|++||++++.+...+
T Consensus         8 ~~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~~d~   48 (79)
T cd00991           8 AVAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTLEDF   48 (79)
T ss_pred             cCCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCHHHH
Confidence            34589999999999999999 999999999999999876553

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3580|consensus

Probab=98.66  E-value=3e-08  Score=72.78  Aligned_cols=56  Identities=27%  Similarity=0.449  Sum_probs=50.0

Q ss_pred             CcCceEEecCCCCCC-CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..+|+-|+||.++++ ..++..|+|+.|.|+|||  .|+||.||+|+.|||++++|...
T Consensus        20 rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~h   76 (1027)
T KOG3580|consen   20 RGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLH   76 (1027)
T ss_pred             CcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHH
Confidence            367889999999987 456778999999999999  77899999999999999998766

>KOG1892|consensus

Probab=98.64  E-value=4.1e-08  Score=74.79  Aligned_cols=57  Identities=32%  Similarity=0.499  Sum_probs=48.0

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      +.|++|+.-+|.-.  +..||||.+|.+|++|+.+|||+.||++++|||+++-.+++-+
T Consensus       944 GmGLSIVAAkGaGq--~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQEr 1000 (1629)
T KOG1892|consen  944 GMGLSIVAAKGAGQ--RKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQER 1000 (1629)
T ss_pred             CceEEEEeeccCCc--cccceEEEEeccCCccccccccccCceeeeecCcccccccHHH
Confidence            45778777555433  3469999999999999999999999999999999999998833

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.63  E-value=3.3e-08  Score=54.51  Aligned_cols=36  Identities=25%  Similarity=0.533  Sum_probs=34.1

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCC
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKG   58 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~   58 (69)
                      .+++|..+.+++||+++| |++||+|++||++++.+.
T Consensus        13 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~   48 (85)
T cd00988          13 GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGL   48 (85)
T ss_pred             CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCC
Confidence            479999999999999998 999999999999999887

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3549|consensus

Probab=98.62  E-value=2.9e-08  Score=69.05  Aligned_cols=52  Identities=29%  Similarity=0.447  Sum_probs=49.5

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      +||++|.||.+...     |+.|+++.++-+|+..|.|-+||.|++|||+.++++++
T Consensus        67 GlGLSIKGGaEHn~-----PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~H  118 (505)
T KOG3549|consen   67 GLGLSIKGGAEHNL-----PVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPH  118 (505)
T ss_pred             cceeeeccccccCc-----cEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCCh
Confidence            68999999998776     99999999999999999999999999999999999988

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.52  E-value=1.5e-07  Score=51.11  Aligned_cols=39  Identities=21%  Similarity=0.416  Sum_probs=35.0

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      .++.|..+.++++|++.| |++||+|++|||+++.+...+
T Consensus        12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~   50 (79)
T cd00989          12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWEDL   50 (79)
T ss_pred             cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCHHHH
Confidence            368999999999999999 999999999999999876553

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3651|consensus

Probab=98.51  E-value=2.3e-07  Score=63.69  Aligned_cols=51  Identities=27%  Similarity=0.466  Sum_probs=46.4

Q ss_pred             CceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          5 PIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         5 lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|++|-||....+     =+||.+|+.+.||+++|+++.||.|+.|||+++...+.
T Consensus        18 iGISIGGGapyCP-----ClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktK   68 (429)
T KOG3651|consen   18 IGISIGGGAPYCP-----CLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTK   68 (429)
T ss_pred             eeEEecCCCCcCC-----eEEEEEeccCCchhccCccccCCeeEEecceeecCccH
Confidence            4899999988776     78999999999999999999999999999999987654

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.50  E-value=2.5e-07  Score=51.21  Aligned_cols=40  Identities=30%  Similarity=0.487  Sum_probs=36.2

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ..+++|..+.+++||+++| +++||+|++||++++.+...+
T Consensus        23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~~~   62 (90)
T cd00987          23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVADL   62 (90)
T ss_pred             CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHHHH
Confidence            3489999999999999999 999999999999999887653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3552|consensus

Probab=98.47  E-value=1.9e-07  Score=70.89  Aligned_cols=55  Identities=29%  Similarity=0.573  Sum_probs=48.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc------ccccccCC
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT------LGYCETGV   68 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~------~~~~~~~~   68 (69)
                      +.|||-++.|         .++.|..|.+|||+  -|+|++||+|++|||.++.+.+.      +|.|+.+|
T Consensus        65 ~~lGFgfvag---------rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv  125 (1298)
T KOG3552|consen   65 ASLGFGFVAG---------RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSV  125 (1298)
T ss_pred             ccccceeecC---------CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhc
Confidence            4678887776         27999999999999  56899999999999999999887      88888765

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.46  E-value=2.8e-07  Score=50.32  Aligned_cols=37  Identities=32%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .++.|..+.++++|+.+| |++||+|++||++++.+..
T Consensus        12 ~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~~   48 (80)
T cd00990          12 GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDALQ   48 (80)
T ss_pred             CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHHH
Confidence            379999999999999999 9999999999999998743

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.32  E-value=1.1e-06  Score=48.07  Aligned_cols=37  Identities=32%  Similarity=0.586  Sum_probs=33.3

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+++|..+.+++||+. + |++||.|++||+.++.+...
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~~~   44 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEAEE   44 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCCHHH
Confidence            4799999999999986 7 99999999999999987654

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3606|consensus

Probab=98.30  E-value=1.2e-06  Score=59.27  Aligned_cols=58  Identities=22%  Similarity=0.388  Sum_probs=48.8

Q ss_pred             CcCceEEecCCCCCC----CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH----IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~----~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      +-|||-|..|.....    .+.-.+|||++..|+|.|+-.|.|-++|++++|||+.+...++
T Consensus       171 kPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTL  232 (358)
T KOG3606|consen  171 KPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTL  232 (358)
T ss_pred             CCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccH
Confidence            458999999975321    2334599999999999999999999999999999999987776

>KOG3580|consensus

Probab=98.29  E-value=7e-07  Score=65.82  Aligned_cols=50  Identities=28%  Similarity=0.452  Sum_probs=45.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+.|+.++||-+.       +|||..|.+++||+..| |+.||+|++||.+++.|+..
T Consensus       417 dSvGLRLAGGNDV-------GIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~R  466 (1027)
T KOG3580|consen  417 DSVGLRLAGGNDV-------GIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVR  466 (1027)
T ss_pred             CeeeeEeccCCce-------eEEEeecccCCchhhcc-ccccceeEEeccccchhhhH
Confidence            4678999999875       89999999999999999 99999999999999998765

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.17  E-value=2.7e-06  Score=59.44  Aligned_cols=40  Identities=28%  Similarity=0.537  Sum_probs=36.7

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ..+++|..|.+++||+++| |++||+|++|||+++.+...+
T Consensus       256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~~~  295 (428)
T TIGR02037       256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSFADL  295 (428)
T ss_pred             CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCHHHH
Confidence            3589999999999999999 999999999999999987664

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.13  E-value=2.4e-06  Score=58.02  Aligned_cols=37  Identities=24%  Similarity=0.474  Sum_probs=34.4

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .+++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus        62 ~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~   98 (334)
T TIGR00225        62 GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMS   98 (334)
T ss_pred             CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            479999999999999999 9999999999999998763

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>PRK10139 serine endoprotease; Provisional

Probab=98.10  E-value=4.9e-06  Score=58.99  Aligned_cols=41  Identities=15%  Similarity=0.404  Sum_probs=37.4

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ..+++|..|.+++||+++| |++||+|++|||+++.+...+.
T Consensus       289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~  329 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELR  329 (455)
T ss_pred             CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHH
Confidence            3589999999999999999 9999999999999999877754

>PRK10942 serine endoprotease; Provisional

Probab=98.09  E-value=5.4e-06  Score=59.02  Aligned_cols=41  Identities=20%  Similarity=0.460  Sum_probs=37.6

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ..+++|..|.+++||+++| |+.||+|++|||+++.+...+.
T Consensus       310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~  350 (473)
T PRK10942        310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALR  350 (473)
T ss_pred             CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHHHHH
Confidence            3589999999999999999 9999999999999999887754

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.05  E-value=5.3e-06  Score=56.96  Aligned_cols=39  Identities=26%  Similarity=0.367  Sum_probs=36.2

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      .+++|.++.+++||+++| |++||+|++|||+++.+...+
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~dl  316 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGAEEL  316 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCHHHH
Confidence            589999999999999999 999999999999999987654

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=98.05  E-value=7e-06  Score=56.48  Aligned_cols=39  Identities=31%  Similarity=0.452  Sum_probs=35.9

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      .+++|..+.+++||+++| |++||+|++|||+++.+...+
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~~l  317 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISALET  317 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHHHH
Confidence            589999999999999999 999999999999999876553

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.04  E-value=6.6e-06  Score=57.47  Aligned_cols=40  Identities=38%  Similarity=0.576  Sum_probs=36.8

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|+.+.+++||+++| |++||+|++||++++.+...+.
T Consensus       362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~~d~~  401 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSVAELR  401 (428)
T ss_pred             CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence            589999999999999999 9999999999999999876643

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.03  E-value=8.2e-06  Score=54.32  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=36.3

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      .|..|+.+.++++|++.| |+.||.|++|||+++.+...+
T Consensus       191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~~~  229 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPEQA  229 (259)
T ss_pred             eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHH
Confidence            489999999999999999 999999999999999987664

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.02  E-value=3.5e-06  Score=59.39  Aligned_cols=38  Identities=18%  Similarity=0.124  Sum_probs=35.1

Q ss_pred             EEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        24 i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+|..|.++|||+++| +++||+|+++||+++.+.+.++
T Consensus       128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~  165 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVR  165 (449)
T ss_pred             ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence            4799999999999999 9999999999999999887754

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.02  E-value=1.2e-05  Score=55.83  Aligned_cols=36  Identities=25%  Similarity=0.452  Sum_probs=33.8

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ++.|..+.+++||+++| |++||+|++|||+++.+.+
T Consensus       103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~  138 (389)
T PLN00049        103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLS  138 (389)
T ss_pred             cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            79999999999999999 9999999999999998753

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.01  E-value=6e-06  Score=57.93  Aligned_cols=49  Identities=31%  Similarity=0.493  Sum_probs=41.1

Q ss_pred             cCCCCCCCCCC-CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         11 GGIGNQHIPGD-NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        11 GG~~~~~~~~~-~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      +|++......+ ..+.|.++.+++||+++| +++||.|+.|||.++.+++.
T Consensus       100 ~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~  149 (406)
T COG0793         100 GGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSL  149 (406)
T ss_pred             cceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCH
Confidence            35554444444 689999999999999999 99999999999999998873

>PRK10139 serine endoprotease; Provisional

Probab=98.00  E-value=9.6e-06  Score=57.54  Aligned_cols=40  Identities=28%  Similarity=0.457  Sum_probs=36.5

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|..+.+++||+++| |++||+|++||++++.+...+.
T Consensus       390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~  429 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMR  429 (455)
T ss_pred             CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence            479999999999999999 9999999999999999876643

>TIGR00054 RIP metalloprotease RseP

Probab=97.98  E-value=8.2e-06  Score=57.21  Aligned_cols=39  Identities=13%  Similarity=0.231  Sum_probs=35.4

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      .+..|..|.+++||+++| |++||+|++|||+++.+...+
T Consensus       203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~~dl  241 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSWTDF  241 (420)
T ss_pred             cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCHHHH
Confidence            368999999999999999 999999999999999876653

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.96  E-value=1.4e-05  Score=56.42  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=34.8

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      +..|..|.++|||+++| |++||+|++|||+++.+...+
T Consensus       222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~~dl  259 (449)
T PRK10779        222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQWQTF  259 (449)
T ss_pred             CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHH
Confidence            47899999999999999 999999999999999886654

>PRK10942 serine endoprotease; Provisional

Probab=97.90  E-value=1.5e-05  Score=56.80  Aligned_cols=40  Identities=28%  Similarity=0.410  Sum_probs=36.8

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|+.+.++++|+++| |++||+|++||++++.+...+.
T Consensus       408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~~dl~  447 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNIAELR  447 (473)
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence            479999999999999999 9999999999999999877654

>TIGR00054 RIP metalloprotease RseP

Probab=97.84  E-value=1.5e-05  Score=55.90  Aligned_cols=40  Identities=15%  Similarity=0.264  Sum_probs=36.4

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+.+|..+.+++||+++| +++||+|+++||+++.+...+.
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~  167 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVR  167 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence            478899999999999999 9999999999999999877654

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3542|consensus

Probab=97.84  E-value=7.4e-06  Score=61.34  Aligned_cols=50  Identities=24%  Similarity=0.561  Sum_probs=45.8

Q ss_pred             CceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          5 PIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         5 lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      |-|++.||-..-.     +|||..|.|++.|++.| ++.||+|++|||+..++++.
T Consensus       550 l~f~L~GGsEkGf-----gifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~  599 (1283)
T KOG3542|consen  550 LMFRLVGGSEKGF-----GIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISA  599 (1283)
T ss_pred             ceeEeccCccccc-----eeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhH
Confidence            4588999987665     99999999999999999 99999999999999999887

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.75  E-value=1.5e-05  Score=56.50  Aligned_cols=36  Identities=17%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             EEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         26 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        26 I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      |..|.|+|+|+++| |++||+|++|||+.+.+...++
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~D~~   37 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDLIDYQ   37 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHH
Confidence            56789999999999 9999999999999998866643

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.65  E-value=3.5e-05  Score=57.10  Aligned_cols=45  Identities=29%  Similarity=0.505  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEEC--CEEcC
Q psy12207         12 GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR--NSTVS   56 (69)
Q Consensus        12 G~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vn--g~~~~   56 (69)
                      |+|......+..++|..+.++|||++++.|++||+|++||  |.++.
T Consensus       245 GIGa~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~  291 (667)
T PRK11186        245 GIGAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIV  291 (667)
T ss_pred             EEEEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCccc
Confidence            4554433344579999999999999983399999999999  44433

>KOG3605|consensus

Probab=97.52  E-value=3.8e-05  Score=56.97  Aligned_cols=52  Identities=23%  Similarity=0.472  Sum_probs=43.0

Q ss_pred             CceEEe-cCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          5 PIYNIA-GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         5 lG~~i~-GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ||..|+ .|++.-.    .-++|....++|||++.|+|-+||+|++|||+++..+++
T Consensus       659 LGVViVESGWGSmL----PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPL  711 (829)
T KOG3605|consen  659 LGVVIVESGWGSIL----PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPL  711 (829)
T ss_pred             eeEEEEecCccccc----hHHHHHhcccCChhhhcCCccccceeEeecCceeccccH
Confidence            566544 4777533    257888899999999999999999999999999999887

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.51  E-value=0.0002  Score=43.84  Aligned_cols=55  Identities=15%  Similarity=0.090  Sum_probs=35.6

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCC-CCEEEEECCEEcCCCccc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQV-GDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~-gD~il~vng~~~~~~~~~   61 (69)
                      .||+++.=-.-.  ...+..+-|.+|.|+|||+.+| |++ .|.|+.+++..+.+...+
T Consensus        27 ~LG~sv~~~~~~--~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~~l   82 (138)
T PF04495_consen   27 LLGISVRFESFE--GAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDEDDL   82 (138)
T ss_dssp             SS-EEEEEEE-T--TGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--STCHH
T ss_pred             CCcEEEEEeccc--ccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCHHHH
Confidence            356665532222  1234588999999999999999 887 699999999888866553

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00049  Score=46.82  Aligned_cols=41  Identities=27%  Similarity=0.393  Sum_probs=37.1

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ..+++|..+.+++||+++| ++.||.|+++||.++.+...+.
T Consensus       269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~  309 (347)
T COG0265         269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLV  309 (347)
T ss_pred             CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHH
Confidence            4579999999999999999 9999999999999999876644

>KOG0609|consensus

Probab=97.00  E-value=0.00049  Score=49.96  Aligned_cols=38  Identities=34%  Similarity=0.620  Sum_probs=35.6

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .++|.++..||.+++.|.|+.||+|.++||+++.+.+-
T Consensus       147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~  184 (542)
T KOG0609|consen  147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSP  184 (542)
T ss_pred             ccEEeeeccCCcchhccceeeccchheecCeecccCCH
Confidence            69999999999999999999999999999999988743

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=96.97  E-value=0.00071  Score=47.79  Aligned_cols=40  Identities=18%  Similarity=0.420  Sum_probs=32.3

Q ss_pred             CCcEEEEEeC--------CCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         21 DNGIYVTKIM--------DGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        21 ~~~i~I~~v~--------~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ..+++|....        ..+||+.+| |++||.|++||++++.+...+
T Consensus       104 t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~~DL  151 (402)
T TIGR02860       104 TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNMDDL  151 (402)
T ss_pred             cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCHHHH
Confidence            3577776542        358999999 999999999999999887664

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG3605|consensus

Probab=96.96  E-value=0.00059  Score=50.87  Aligned_cols=34  Identities=26%  Similarity=0.648  Sum_probs=30.3

Q ss_pred             EEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         26 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        26 I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      |=+...+|.|+|.| +|+|.+|++|||+++...++
T Consensus       760 ICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pH  793 (829)
T KOG3605|consen  760 ICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPH  793 (829)
T ss_pred             eehhhcccchhccC-ceeeeeEEEECCceEEeccH
Confidence            45678899999999 99999999999999987766

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=96.94  E-value=0.0012  Score=48.10  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=31.0

Q ss_pred             CCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCE
Q psy12207         19 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS   53 (69)
Q Consensus        19 ~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~   53 (69)
                      .......|+.|.++|||+++| |.+||.|+.|||.
T Consensus       459 ~~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~  492 (558)
T COG3975         459 SEGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI  492 (558)
T ss_pred             ccCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence            344578999999999999999 9999999999999

>KOG3129|consensus

Probab=96.84  E-value=0.0018  Score=42.50  Aligned_cols=37  Identities=24%  Similarity=0.285  Sum_probs=31.1

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .-++|.+|.|+|||+++| |+.||.|+++...--.|..
T Consensus       139 ~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~  175 (231)
T KOG3129|consen  139 PFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFL  175 (231)
T ss_pred             ceEEEeecCCCChhhhhC-cccCceEEEecccccccch
Confidence            357999999999999999 9999999998766555444

>KOG1320|consensus

Probab=96.53  E-value=0.0035  Score=45.18  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=35.1

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+++++|+++++++..+ +..||+|..|||+++.|..+
T Consensus       399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~  435 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKH  435 (473)
T ss_pred             EEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHH
Confidence            58999999999999998 99999999999999999877

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=95.70  E-value=0.013  Score=40.65  Aligned_cols=38  Identities=32%  Similarity=0.648  Sum_probs=34.2

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      .++|+..+..++++  .|.|..||.|++|||+++++...+
T Consensus       130 ~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s~~e~  167 (342)
T COG3480         130 AGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTSSDEL  167 (342)
T ss_pred             eeEEEEEccCCcch--hceeccCCeEEeeCCeecCCHHHH
Confidence            48999999999999  668999999999999999987763

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=95.35  E-value=0.021  Score=32.54  Aligned_cols=37  Identities=22%  Similarity=0.463  Sum_probs=23.1

Q ss_pred             CcEEEEEeCCC--------ChhhccC-CCCCCCEEEEECCEEcCCC
Q psy12207         22 NGIYVTKIMDG--------GAAQVDG-RLQVGDKLIAVRNSTVSKG   58 (69)
Q Consensus        22 ~~i~I~~v~~~--------g~a~~~g-rl~~gD~il~vng~~~~~~   58 (69)
                      ....|.++.++        ||..+-| .+++||.|++|||+++..-
T Consensus        12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~   57 (88)
T PF14685_consen   12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD   57 (88)
T ss_dssp             TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT
T ss_pred             CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC
Confidence            46778888886        4555544 3569999999999999753

>KOG3938|consensus

Probab=95.31  E-value=0.0075  Score=41.11  Aligned_cols=50  Identities=20%  Similarity=0.290  Sum_probs=41.9

Q ss_pred             CcCceEEec-CCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAG-GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~G-G~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+||++|.. |.+        -.||.++.++|.-.+-..+++||.|-+|||+++-.+.+
T Consensus       137 dalGlTITDNG~G--------yAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RH  187 (334)
T KOG3938|consen  137 DALGLTITDNGAG--------YAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRH  187 (334)
T ss_pred             cccceEEeeCCcc--------eeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhH
Confidence            467887764 333        57999999999999887899999999999999988766

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=95.28  E-value=0.018  Score=38.96  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             EEEEEeCCCChh---hccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         24 IYVTKIMDGGAA---QVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        24 i~I~~v~~~g~a---~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      +.=.++.|+..+   ...| |+.||.+++|||.+++++.+
T Consensus       206 l~GYrl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D~~q  244 (276)
T PRK09681        206 IVGYAVKPGADRSLFDASG-FKEGDIAIALNQQDFTDPRA  244 (276)
T ss_pred             ceEEEECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCCHHH
Confidence            445556666544   4477 99999999999999998875

>KOG1738|consensus

Probab=93.62  E-value=0.1  Score=38.95  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=33.4

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..+|+.+.+++||+....|..||.+++||++-+....+
T Consensus       226 ~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwql  263 (638)
T KOG1738|consen  226 PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQL  263 (638)
T ss_pred             ceeccccccCChHHHhhcccCccceeeecccccccchh
Confidence            57889999999999999999999999999988765443

>KOG3532|consensus

Probab=93.53  E-value=0.11  Score=39.63  Aligned_cols=40  Identities=20%  Similarity=0.347  Sum_probs=35.1

Q ss_pred             CCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        20 ~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ++..+-|-.|.+.++|.++. +.+||.+++||+.+++...+
T Consensus       396 ~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s~~q  435 (1051)
T KOG3532|consen  396 TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRSERQ  435 (1051)
T ss_pred             CceEEEEEEecCCChhhHhc-CCCcceEEEecCccchhHHH
Confidence            44567889999999999998 99999999999999987554

>PF12812 PDZ_1: PDZ-like domain

Probab=93.12  E-value=0.13  Score=28.49  Aligned_cols=40  Identities=15%  Similarity=0.117  Sum_probs=33.2

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccccc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGY   63 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~~   63 (69)
                      +.++.....++++...+ +..+-.|.+||+++..|+..+.+
T Consensus        31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~Ld~f~~   70 (78)
T PF12812_consen   31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPDLDDFIK   70 (78)
T ss_pred             CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcCHHHHHH
Confidence            46777778888888776 99999999999999998877543

>KOG1421|consensus

Probab=92.63  E-value=0.1  Score=39.85  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=31.1

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      -+.|..+.++|||++  .|++||.+++||++.+.++-.
T Consensus       304 mLvV~~vL~~gpa~k--~Le~GDillavN~t~l~df~~  339 (955)
T KOG1421|consen  304 MLVVETVLPEGPAEK--KLEPGDILLAVNSTCLNDFEA  339 (955)
T ss_pred             eEEEEEeccCCchhh--ccCCCcEEEEEcceehHHHHH
Confidence            457888999999988  599999999999998877654

>KOG2921|consensus

Probab=91.75  E-value=0.19  Score=36.14  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=34.9

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..++.|+.+...||+.--..|.+||.|.++||.++++.+.
T Consensus       219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v~d  258 (484)
T KOG2921|consen  219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKVSD  258 (484)
T ss_pred             CceEEEEeccccCCCcCcccCCccceEEecCCcccCCHHH
Confidence            3489999999999987655599999999999999998877

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=90.20  E-value=0.43  Score=32.52  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=29.7

Q ss_pred             EeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         28 KIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        28 ~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+...+++..++ +++||+++++|+..+.+...
T Consensus       135 ~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~  166 (375)
T COG0750         135 EVAPKSAAALAG-LRPGDRIVAVDGEKVASWDD  166 (375)
T ss_pred             ecCCCCHHHHcC-CCCCCEEEeECCEEccCHHH
Confidence            789999999999 99999999999999998765

>KOG0606|consensus

Probab=89.80  E-value=0.31  Score=38.68  Aligned_cols=37  Identities=24%  Similarity=0.246  Sum_probs=32.9

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .-.|-+|.+++||..+| ++.+|.|+.+||+++.+..+
T Consensus       659 hh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H  695 (1205)
T KOG0606|consen  659 HHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVH  695 (1205)
T ss_pred             eeeeeeecCCCCccccC-CCccceeEeccCcccchhhH
Confidence            35788899999999998 99999999999999987655

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=85.72  E-value=0.81  Score=30.95  Aligned_cols=28  Identities=29%  Similarity=0.385  Sum_probs=23.2

Q ss_pred             CChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         32 GGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        32 ~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ++.-+..| ||.||..+++|+.++++...
T Consensus       217 ~slF~~sg-lq~GDIavaiNnldltdp~~  244 (275)
T COG3031         217 GSLFYKSG-LQRGDIAVAINNLDLTDPED  244 (275)
T ss_pred             cchhhhhc-CCCcceEEEecCcccCCHHH
Confidence            35556677 99999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	69
2byg_A	117	2nd Pdz Domain Of Discs Large Homologue 2 Length =		2e-16
2fe5_A	94	The Crystal Structure Of The Second Pdz Domain Of H		2e-16
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		4e-16
4g69_A	100	Structure Of The Human Discs Large 1 Pdz2 - Adenoma		2e-15
3rl8_A	105	Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc L		2e-15
2oqs_A	97	Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV		2e-15
2awx_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		2e-15
2awu_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		5e-15
2x7z_A	99	Crystal Structure Of The Sap97 Pdz2 I342w C378a Mut		5e-15
2g2l_A	105	Crystal Structure Of The Second Pdz Domain Of Sap97		5e-15
4amh_A	106	Influence Of Circular Permutation On The Folding Pa		6e-15
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		7e-15
2i0l_A	84	X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The		8e-15
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		8e-15
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		8e-15
1qlc_A	95	Solution Structure Of The Second Pdz Domain Of Post		1e-14
2aww_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		2e-14
2i1n_A	102	Crystal Structure Of The 1st Pdz Domain Of Human Dl		3e-09
2jin_A	102	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		2e-08
2jik_A	101	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		2e-08
2eno_A	120	Solution Structure Of The Pdz Domain From Human Syn		3e-08
2wl7_A	102	Crystal Structure Of The Psd93 Pdz1 Domain Length =		1e-07
1zok_A	93	Pdz1 Domain Of Synapse Associated Protein 97 Length		6e-07
1rgr_A	99	Cyclic Peptides Targeting Pdz Domains Of Psd-95: St		9e-07
1kef_A	93	Pdz1 Of Sap90 Length = 93		9e-07
1iu0_A	91	The First Pdz Domain Of Psd-95 Length = 91		1e-06
3rl7_B	107	Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc L		1e-06
1wha_A	105	Solution Structure Of The Second Pdz Domain Of Huma		2e-05
2fne_A	117	The Crystal Structure Of The 13th Pdz Domain Of Mpd		2e-04
2k1z_A	104	Solution Structure Of Par-3 Pdz3 Length = 104		3e-04
2koh_A	111	Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve		3e-04
1uju_A	111	Solution Structure Of The Fourth Pdz Domain Of Huma		5e-04

>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2 Length = 117

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 45/51 (88%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
          ++IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V N ++ +
Sbjct: 39 FSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 89

>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Dlg3 Length = 94

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 45/49 (91%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          ++IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+ +
Sbjct: 18 FSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
           ++IAGG+GNQHIPGDN IYVTKI++GGAA  DGRLQ+GDK++AV +
Sbjct: 169 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 214

>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous Polyposis Coli Cytoskeletal Polarity Complex Length = 100

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 42/46 (91%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
          ++IAGG+GNQHIPGDN IYVTKI++GGAA  DG+LQ+GDKL+AV N
Sbjct: 24 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 69

>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc Length = 105

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 42/46 (91%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
          ++IAGG+GNQHIPGDN IYVTKI++GGAA  DG+LQ+GDKL+AV N
Sbjct: 26 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 71

>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18 Papillomavirus E6 Peptide Length = 97

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 42/46 (91%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
          ++IAGG+GNQHIPGDN IYVTKI++GGAA  DG+LQ+GDKL+AV N
Sbjct: 14 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 59

>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s Length = 105

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 45/51 (88%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
          ++IAGG+GNQHIPGDN IYVTKI++GGAA  DG+LQ+GDKL+AV + ++ +
Sbjct: 18 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEE 68

>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g Length = 105

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
          ++IAGG+GNQHIPGDN IYVTKI++GGAA  DG+LQ+GDKL+AV +
Sbjct: 18 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63

>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant Protein Domain Length = 99

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 41/46 (89%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
          ++IAGG+GNQH PGDN IYVTKI++GGAA  DG+LQ+GDKL+AV N
Sbjct: 23 FSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 68

>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In Complex With A Glur-A C-Terminal Peptide Length = 105

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
          ++IAGG+GNQHIPGDN IYVTKI++GGAA  DG+LQ+GDKL+AV +
Sbjct: 18 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63

>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway Of A Pdz Domain Length = 106

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
          ++IAGG+GNQH PGDN IYVTKI++GGAA  DG+LQ+GDKL+AV N  + +
Sbjct: 17 FSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEE 67

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
           ++IAGG+GNQHIPGDN IYVTKI++GGAA  DGRLQ+GDK++AV +
Sbjct: 115 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 160

>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C- Terminal Peptide Of Hpv18 E6. Length = 84

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
          ++IAGG+GNQHIPGDN IYVTKI++GGAA  DG+LQ+GDKL+AV +
Sbjct: 13 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 58

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 41/44 (93%)
Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           ++IAGG+GNQHIPGDN IYVTKI++GGAA  DGRLQ+GDK++AV
Sbjct: 112 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 155

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 41/44 (93%)
Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           ++IAGG+GNQHIPGDN IYVTKI++GGAA  DGRLQ+GDK++AV
Sbjct: 122 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 165

>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic Density-95 Length = 95

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
          ++IAGG+GNQHIPGDN IYVTKI++GGAA  DGRLQ+GDK++AV +
Sbjct: 18 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 63

>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With C-Terminal Glur-A Peptide Length = 105

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 41/46 (89%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
          ++IAGG+GNQHIPGDN IYVT I++GGAA  DG+LQ+GDKL+AV +
Sbjct: 18 FSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNS 63

>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3 Length = 102

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
          ++IAGGI N H+P D GI++TKI+ GGAA +DGRL V D ++ V    VS+
Sbjct: 19 FSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSE 69

>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 102

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +NI GG   Q++  D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 24 FNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 67

>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 101

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +NI GG   Q++  D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 22 FNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65

>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin 2 Binding Protein Length = 120

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +NI GG   Q++  D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 32 FNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75

>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain Length = 102

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
          ++IAGG  N HI  D GI++TKI+ GGAA  DGRL+V D ++ V    VS+
Sbjct: 24 FSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSE 74

>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97 Length = 93

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          ++IAGG  N HI  D+ I++TKI+ GGAA  DGRL+V D ++ V  + V
Sbjct: 16 FSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADV 64

>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural Basis For Enhanced Affinity And Enzymatic Stability Length = 99

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
          ++IAGG  N HI  D  I++TKI+ GGAA  DGRL+V D ++ V    V +
Sbjct: 16 FSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 66

>pdb|1KEF|A Chain A, Pdz1 Of Sap90 Length = 93

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
          ++IAGG  N HI  D  I++TKI+ GGAA  DGRL+V D ++ V    V +
Sbjct: 16 FSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 66

>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95 Length = 91

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
          ++IAGG  N HI  D  I++TKI+ GGAA  DGRL+V D ++ V    V +
Sbjct: 17 FSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 67

>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc Length = 107

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA-----VRNSTVSKG 58
          ++IAGG  N HI  D+ I++TKI+ GGAA  DGRL+V D ++      VR+ T SK 
Sbjct: 26 FSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKA 82

>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 105

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 7  YNIAGGIGNQ-HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          ++IAGG G+  +  GD GI+V++I +GGAA   G LQVGD+++++
Sbjct: 22 FSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66

>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 7  YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
          ++I GG G+ H  GD  IYV  +   GAA  DGRL+ GD++IAV   ++ 
Sbjct: 40 FSIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLE 87

>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3 Length = 104

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          D GI+V  I++GGAA  DGRL+V D+LIAV
Sbjct: 35 DLGIFVKSIINGGAASKDGRLRVNDQLIAV 64

>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin C-Terminus Length = 111

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          D GI+V  I++GGAA  DGRL+V D+LIAV
Sbjct: 38 DLGIFVKSIINGGAASKDGRLRVNDQLIAV 67

>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 111

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          G  GN   P D GI+++K+   GAA  DGRL+VG +L+ V   ++
Sbjct: 33 GHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSL 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	2e-19
2awx_A	105	Synapse associated protein 97; membrane protein, s	1e-18
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	6e-18
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	1e-16
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	1e-16
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-16
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-16
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	3e-16
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	1e-15
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	2e-15
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	4e-15
2fne_A	117	Multiple PDZ domain protein; structural protein, s	5e-15
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	5e-15
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	1e-14
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-14
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	2e-14
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	2e-14
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	3e-14
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	4e-14
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-12
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	5e-14
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	5e-14
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	9e-14
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	9e-14
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	9e-14
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	9e-14
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	1e-13
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	2e-13
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	4e-13
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	9e-13
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	1e-12
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	1e-12
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-12
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	2e-12
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-12
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-12
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-09
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	9e-07
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	3e-12
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	3e-12
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	5e-12
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	9e-12
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-11
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-11
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	2e-11
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-11
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-09
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	3e-11
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	3e-11
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	3e-11
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	3e-11
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	4e-11
2opg_A	98	Multiple PDZ domain protein; structural protein, s	4e-11
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	4e-11
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	6e-11
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	8e-11
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	9e-11
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-08
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	9e-11
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	9e-11
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	2e-10
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	2e-10
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	2e-10
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	3e-10
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	3e-10
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	3e-10
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	3e-10
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	4e-10
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	5e-10
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	5e-10
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	6e-10
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	6e-10
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	7e-10
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	7e-10
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	8e-10
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	9e-10
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	9e-10
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	9e-10
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	5e-09
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	1e-09
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	1e-09
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	1e-09
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	1e-09
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	1e-09
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	1e-09
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-09
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	1e-09
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	2e-09
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	2e-09
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	3e-09
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	5e-09
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	5e-09
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	6e-09
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	7e-09
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	2e-08
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	3e-08
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	5e-08
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	9e-08
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	1e-07
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	2e-07
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	2e-07
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	4e-07
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	6e-07
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	7e-07
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	9e-07
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	1e-06
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	2e-06
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	2e-06
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	3e-06
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	4e-06
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	4e-06
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	5e-06
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	7e-06
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	7e-06
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	1e-05
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	1e-05
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-05
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	2e-05
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	2e-05
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	2e-05
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	2e-05
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-05
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	4e-04
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	4e-05
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	4e-05
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	4e-05
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	5e-05
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	5e-05
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	7e-05
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	7e-05
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	2e-04
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	2e-04
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	2e-04
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	2e-04
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	2e-04
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	3e-04
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	3e-04
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	4e-04
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	4e-04
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	4e-04
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	4e-04
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	6e-04
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	6e-04
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	8e-04
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	9e-04

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 73.9 bits (182), Expect = 2e-19
 Identities = 35/43 (81%), Positives = 40/43 (93%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V
Sbjct: 40 SIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMV 82

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 71.6 bits (176), Expect = 1e-18
 Identities = 33/43 (76%), Positives = 40/43 (93%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +IAGG+GNQHIPGDN IYVTKI++GGAA  DG+LQ+GDKL+AV
Sbjct: 19 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 69.6 bits (171), Expect = 6e-18
 Identities = 34/43 (79%), Positives = 41/43 (95%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV
Sbjct: 19 SIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 67.0 bits (164), Expect = 1e-16
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          NI GG   Q++  D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 23 NIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 67.5 bits (165), Expect = 1e-16
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I G +G  H    +GIYV  ++ G AA  +G +QV DK++AV
Sbjct: 32 RIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAV 74

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 66.3 bits (162), Expect = 2e-16
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          NI GG   Q++  D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 33 NIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 65.8 bits (161), Expect = 2e-16
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +IAGGI N H+P D GI++TKI+ GGAA +DGRL V D ++ V
Sbjct: 20 SIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 65.9 bits (161), Expect = 3e-16
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60
          ++ G        G+ GI+V +I +G  A  DGRL+  D+++A+    + +  T
Sbjct: 37 SVVGLRSENR--GELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTIT 87

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 64.3 bits (157), Expect = 1e-15
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I+G           GIYV  ++ G AA +DGR++  DK++ V
Sbjct: 30 SISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRV 72

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 65.4 bits (159), Expect = 2e-15
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 8   NIAGGI-GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           +I G   G        GI+V  + +GGAA  DGR+QV D L+ V
Sbjct: 96  SIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 62.7 bits (153), Expect = 4e-15
 Identities = 21/44 (47%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 8  NIAGGIGNQ-HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +IAGG G+  +  GD GI+V++I +GGAA   G LQVGD+++++
Sbjct: 23 SIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 63.1 bits (154), Expect = 5e-15
 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG G+ H  GD  IYV  +   GAA  DGRL+ GD++IAV
Sbjct: 41 SIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAV 81

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 62.3 bits (152), Expect = 5e-15
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           IAG IG++ +   +GI+V  I    A + DGR+Q+GD++IAV
Sbjct: 20 TIAGYIGDKKL-EPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 62.0 bits (151), Expect = 1e-14
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I     +  I G   IYV  I+  GAA  DGRL+ GD+LI V
Sbjct: 46 SITSR--DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 61.6 bits (150), Expect = 1e-14
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 8  NIAGGI----GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG     GN   P D GI+++K+   GAA  DGRL+VG +L+ V
Sbjct: 26 SIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV 72

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 61.2 bits (149), Expect = 2e-14
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 8  NIAGGI-GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I G   G        GI+V  + +GGAA  DGR+QV D L+ V
Sbjct: 20 SIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 60.7 bits (148), Expect = 2e-14
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          ++ GG+         GIYV  ++  GAA+ DGR+  GD+++AV
Sbjct: 21 SVTGGVNTSV--RHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 61

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 60.8 bits (148), Expect = 3e-14
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 8  NIAGG-IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I G  +G        GI+V  + +GGAAQ DGR+QV D+++ V
Sbjct: 25 SIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 62.5 bits (152), Expect = 4e-14
 Identities = 33/48 (68%), Positives = 42/48 (87%)

Query: 8   NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
           +IAGG+GNQHIPGDN IYVTKI++GGAA  DGRLQ+GDK++AV +  +
Sbjct: 116 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 163

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 57.8 bits (140), Expect = 2e-12
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +IAGG  N HI  D  I++TKI+ GGAA  DGRL+V D ++ V
Sbjct: 21 SIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 63

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 60.5 bits (147), Expect = 5e-14
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           +AGG    H   D  IYV  +  GG    DGR++ GD L+ V
Sbjct: 41 TVAGGAS--HREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 60.0 bits (146), Expect = 5e-14
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I     +  I G   IYV  I+  GAA  DGRL+ GD+LI V
Sbjct: 27 SITSR--DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 59.3 bits (144), Expect = 9e-14
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I    G        GIYV  ++ GGAA VDGRL  GD+L++V
Sbjct: 26 SIVAAKGAGQ--DKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 59.8 bits (145), Expect = 9e-14
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          ++ G    +    D GI++  I+ GGAA  DGRL++ D+LIAV
Sbjct: 42 SLKGNKSRET-GTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV 83

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 59.7 bits (145), Expect = 9e-14
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +IAGG+G+    GD  I++  +   G A    +L+VGD+++ +
Sbjct: 41 SIAGGVGSPL--GDVPIFIAMMHPTGVAAQTQKLRVGDRIVTI 81

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 59.8 bits (145), Expect = 9e-14
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60
          ++          G   I+V  +  G  A  D RL+  D+++A+ ++ + +  +
Sbjct: 42 SVVALRSQNL--GKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNIS 92

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 59.4 bits (144), Expect = 1e-13
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I GG       G+ G Y+ KI+ GG+A+  G+L  G +++  
Sbjct: 35 RIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW 77

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 59.1 bits (143), Expect = 2e-13
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          ++ GG G+ H  GD  + + +I  G A++    +Q GD+++ +
Sbjct: 45 SLEGGKGSLH--GDKPLTINRIFKGAASEQSETVQPGDEILQL 85

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 57.8 bits (140), Expect = 4e-13
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I     +   P  + I +  ++  G A+  G L  GD+L++V
Sbjct: 31 SILDY-QDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 57.0 bits (138), Expect = 9e-13
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           +  G+      G  G+Y+  ++ G  A  DGRL +GD+++ V
Sbjct: 24 GLIDGMHTHL--GAPGLYIQTLLPGSPAAADGRLSLGDRILEV 64

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 56.6 bits (137), Expect = 1e-12
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 8  NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          NI GG     N       GI+V+KI+D G A  +G LQ+ D++I V
Sbjct: 24 NIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 56.5 bits (137), Expect = 1e-12
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I GG  +        + +T +  GG A  +G ++ GD+L++V
Sbjct: 19 VIRGGAHDDR-NKSRPVVITSVRPGGPADREGTIKPGDRLLSV 60

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 56.3 bits (136), Expect = 2e-12
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I G     +  GD GIY+  IM GGA   DGR++ GD L+ V
Sbjct: 22 SIVGQ---SNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV 61

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 56.3 bits (136), Expect = 2e-12
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I GGI          +Y+ +++ GG    DGRL+ GD+L+++
Sbjct: 30 KILGGINRNE---GPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 56.2 bits (136), Expect = 2e-12
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 8  NIAGGI---GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          ++       G        GIYV  ++  GAA+ DGR+  GD+++AV
Sbjct: 25 SVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 70

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 58.8 bits (141), Expect = 3e-12
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 9   IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60
           IAGG  N HI  D  I++TKI+ GGAA  DGRL+V D ++ V N    +  T
Sbjct: 76  IAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV-NEVDVREVT 126

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 50.3 bits (119), Expect = 3e-09
 Identities = 35/55 (63%), Positives = 44/55 (80%), Gaps = 1/55 (1%)

Query: 7   YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
           ++IAGG+GNQHIPGDN IYVTKI++GGAA  DGRLQ+GDK++AV NS   +    
Sbjct: 169 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV-NSVGLEDVMH 222

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 43.0 bits (100), Expect = 9e-07
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 6/48 (12%)

Query: 8   NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
           NI GG   +      GI+++ I+ GG A + G L+ GD++++V    +
Sbjct: 323 NIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSVNGVDL 364

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 55.5 bits (134), Expect = 3e-12
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 8  NIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I+GG  N H   G+  I ++ ++ GG A  +G+LQ  D++  V
Sbjct: 24 AISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 55.4 bits (134), Expect = 3e-12
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + GG   + + GD  + V  ++  G AQ  GRL+VGD ++ +
Sbjct: 27 TLGGG---RDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI 66

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 55.1 bits (133), Expect = 5e-12
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 8  NIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           ++GG  N H   G+  I ++ ++ GG A  DG LQ  D+++ V
Sbjct: 31 AVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMV 72

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 53.8 bits (130), Expect = 9e-12
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 8  NIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +IAGG G+      D GI+++++ + G A   G ++VGDKL+ V
Sbjct: 19 SIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 54.4 bits (131), Expect = 1e-11
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 8  NIAGGIGNQHIPGDN----GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG G      +     GI++  +++   A  +G L+ GD+++ V
Sbjct: 41 SIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 87

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 53.5 bits (129), Expect = 2e-11
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 8  NIAGGIGNQHIP----GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG G            GI++  +++   A  +G L+ GD+++ V
Sbjct: 21 SIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 67

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 53.5 bits (129), Expect = 2e-11
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 8  NIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +IAGG G+      D GI+++++ + G A   G ++VGDKL+ V
Sbjct: 31 SIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 73

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 55.1 bits (133), Expect = 2e-11
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 8   NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
            I GG  +        + +T +  GG A  +G ++ GD+L++V
Sbjct: 122 VIRGGAHDDR-NKSRPVVITCVRPGGPADREGTIKPGDRLLSV 163

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 48.6 bits (116), Expect = 5e-09
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           ++GGI       D    V+ +  GG A    +L VGD + AV    ++K
Sbjct: 24 TVSGGIDK-----DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAK 68

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 53.6 bits (129), Expect = 3e-11
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60
          ++AG      +     I+V  I   G A  DGR+++GD+L+ + N+ +  G +
Sbjct: 41 SLAGNKDRSRM----SIFVVGINPEGPAAADGRMRIGDELLEI-NNQILYGRS 88

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 53.2 bits (128), Expect = 3e-11
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG         N I + ++ + GAA  DGRL  GD+++ V
Sbjct: 33 SIVGGKDTPL----NAIVIHEVYEEGAAARDGRLWAGDQILEV 71

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 52.7 bits (127), Expect = 3e-11
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 8  NIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I  G           GI++  I+    A + GRL+VGD+++++
Sbjct: 22 CIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 52.8 bits (127), Expect = 3e-11
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 8  NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I+GG+G   N   P D+GI+VT++   G A     LQ GDK+I  
Sbjct: 26 SISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQA 69

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 52.4 bits (126), Expect = 4e-11
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 8  NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I+GG+G   N   P D+GI+VT++   G A     LQ GDK+I  
Sbjct: 18 SISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQA 61

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 52.3 bits (126), Expect = 4e-11
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG           I + ++ + GAA  DGRL  GD+++ V
Sbjct: 20 SIVGGSDTLLGA----IIIHEVYEEGAACKDGRLWAGDQILEV 58

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 53.3 bits (128), Expect = 4e-11
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + GG   +   G    ++TK+  G  A   G L+ GD+++  
Sbjct: 53 KVVGGKMTES--GRLCAFITKVKKGSLADTVGHLRPGDEVLEW 93

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 52.0 bits (125), Expect = 6e-11
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           P + G  +  ++ G   ++D +LQ GD +   
Sbjct: 21 SPNEIGCTIADLIQGQYPEIDSKLQRGDIITKF 53

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 52.5 bits (126), Expect = 8e-11
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 8  NIAGGIGNQHIPG----DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
           I  G   +  P       GI++++++ GG AQ  G L V D+++ V    VS
Sbjct: 47 YIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVS 99

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 53.7 bits (129), Expect = 9e-11
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 11  GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
             +G    P + G  +  ++ G   ++D +LQ GD +       +
Sbjct: 125 KELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDAL 169

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 9  IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          + GG  N       G  +T +   G    D RL++ D +  +
Sbjct: 35 VCGGKNN---HVTTGCVITHVYPEGQVAADKRLKIFDHICDI 73

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 51.6 bits (124), Expect = 9e-11
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG   +       +YV ++ + G A  +GR++VGD++I +
Sbjct: 27 SIRGGREYKM-----DLYVLRLAEDGPAIRNGRMRVGDQIIEI 64

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 52.0 bits (125), Expect = 9e-11
 Identities = 9/43 (20%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          ++ GG        +  +YV ++ + G A+  G++++GD+++ +
Sbjct: 40 SLRGGREY-----NMDLYVLRLAEDGPAERSGKMRIGDEILEI 77

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 51.4 bits (123), Expect = 2e-10
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           +     +     D GIY+++I     A  DGR++ GD++I +
Sbjct: 37 TVCYRTDD---EDDIGIYISEIDPNSIAAKDGRIREGDRIIQI 76

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 50.9 bits (122), Expect = 2e-10
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 8  NIAGGIGNQHIP----GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG              GI++ ++++   A     L+ GDK++ V
Sbjct: 32 SIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEV 78

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 52.8 bits (126), Expect = 2e-10
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 8   NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           +I GG  N+       I ++KI  G AA     L VGD +++V
Sbjct: 94  SIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAILSV 131

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 50.9 bits (122), Expect = 3e-10
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + GG        D  + +  ++  G A +DG+++ GD +++V
Sbjct: 34 TVVGGD-----EPDEFLQIKSLVLDGPAALDGKMETGDVIVSV 71

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 50.4 bits (121), Expect = 3e-10
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I GG         +G+ V  I+ GG A  DGRLQ GD ++ +
Sbjct: 31 GIVGG-------KTSGVVVRTIVPGGLADRDGRLQTGDHILKI 66

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 50.6 bits (121), Expect = 3e-10
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 10 AGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
            G+G   I     + ++ +++ GAA  DG LQ GD LI+V
Sbjct: 37 NLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISV 77

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 49.9 bits (120), Expect = 3e-10
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I G         D G++V+ I+ GG A  DGRL  GD+++ V
Sbjct: 21 SIVGK------RNDTGVFVSDIVKGGIADADGRLMQGDQILMV 57

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 49.9 bits (120), Expect = 4e-10
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          NI GG        ++ IY+++++ GG A   G L+ GD+L++V
Sbjct: 21 NIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSV 58

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 50.1 bits (120), Expect = 5e-10
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I GG        D  + V  ++  G A  DG+++ GD ++ +
Sbjct: 35 TIIGGD-----EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYI 72

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 50.1 bits (120), Expect = 5e-10
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          NI GG   +      GI+V+ I+ GG A + G L+ GD++++V
Sbjct: 31 NIVGGEDGE------GIFVSFILAGGPADLSGELRRGDRILSV 67

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 49.6 bits (119), Expect = 6e-10
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           +           + G+++  +++GG A  DGRL   D+++A+
Sbjct: 21 KLVRRTD------EPGVFILDLLEGGLAAQDGRLSSNDRVLAI 57

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 49.8 bits (119), Expect = 6e-10
 Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          ++AGG   +    +  I V ++   G A  +G +Q G++++++
Sbjct: 32 SLAGGADLE----NKVITVHRVFPNGLASQEGTIQKGNEVLSI 70

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 49.9 bits (119), Expect = 7e-10
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           +   +          + ++ ++ GGAA+  G +Q GD ++AV
Sbjct: 25 LVKERVSKP------PVIISDLIRGGAAEQSGLIQAGDIILAV 61

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 48.8 bits (117), Expect = 7e-10
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG  N+       I ++KI  G AA     L VGD +++V
Sbjct: 21 SIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAILSV 58

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 49.4 bits (118), Expect = 8e-10
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + GG+ +        + V+ + +GGAA+  G +  GD+++A+
Sbjct: 33 ALEGGVDSP----VGKVVVSAVYEGGAAERHGGVVKGDEIMAI 71

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 48.8 bits (117), Expect = 9e-10
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I GG           IY+  I+  GAA  DGRL+ GD+LI+V
Sbjct: 18 RILGGNEP-----GEPIYIGHIVPLGAADTDGRLRSGDELISV 55

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 48.9 bits (117), Expect = 9e-10
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I+G          + I ++ +  GG A+  G + +GD+++A+
Sbjct: 21 TISGTEEP-----FDPIIISSLTKGGLAERTGAIHIGDRILAI 58

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 50.5 bits (121), Expect = 9e-10
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 8   NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
            I+     +     + + ++ I  G  A   G L++GDKL+A+ N  +
Sbjct: 124 TISSPSSRKP---GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRL 168

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 48.6 bits (116), Expect = 5e-09
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 9  IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          + G +            ++ I     A+  G LQ+GD+++A+
Sbjct: 24 LQGSVFATETLSS-PPLISYIEADSPAERCGVLQIGDRVMAI 64

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 48.9 bits (117), Expect = 1e-09
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I GG           I +  ++  G+A  DGRL  GD+L+ V
Sbjct: 25 RILGGDEP-----GQPILIGAVIAMGSADRDGRLHPGDELVYV 62

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 49.6 bits (118), Expect = 1e-09
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 8/57 (14%)

Query: 8  NIAGGIGNQ-------HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
          +I GGI              D GIYVT++ +GG A++ G LQ+GDK++ V    ++ 
Sbjct: 43 SIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 98

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 49.4 bits (118), Expect = 1e-09
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG           +Y+ ++ D   A +DG +  GD++  V
Sbjct: 36 SIGGGA-----QYCPCLYIVQVFDNTPAALDGTVAAGDEITGV 73

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 48.8 bits (117), Expect = 1e-09
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          NI GG   +      GI+++ I+ GG A + G L+ GD++++V
Sbjct: 27 NIVGGEXGE------GIFISFILAGGPADLSGELRKGDQILSV 63

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 49.0 bits (117), Expect = 1e-09
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG  +        I +++I  G  A   G L VGD ++AV
Sbjct: 44 SITGGKEH-----GVPILISEIHPGQPADRCGGLHVGDAILAV 81

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 48.8 bits (117), Expect = 1e-09
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           P + G  +  ++ G   ++D +LQ GD +   
Sbjct: 27 SPNEIGCTIADLIQGQYPEIDSKLQRGDIITKF 59

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 48.5 bits (116), Expect = 1e-09
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG  +        I +++I  G  A   G L VGD ++AV
Sbjct: 26 SITGGKEH-----GVPILISEIHPGQPADRCGGLHVGDAILAV 63

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 48.0 bits (115), Expect = 1e-09
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + GG        D  + +  ++  G A +DG+++ GD +++V
Sbjct: 16 TVVGGDEP-----DEFLQIKSLVLDGPAALDGKMETGDVIVSV 53

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 48.6 bits (116), Expect = 2e-09
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 8  NIAGGIGNQHIPGDN--GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I   +              + +I+DG  A    +L+VGD+++AV
Sbjct: 27 VIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV 71

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 48.6 bits (116), Expect = 2e-09
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           +   +          + ++ ++ GGAA+  G +Q GD ++AV
Sbjct: 18 LVKERVSKP------PVIISDLIRGGAAEQSGLIQAGDIILAV 54

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 48.2 bits (115), Expect = 3e-09
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          NI GG   +      GI+++ I+ GG A + G L+ GD++++V
Sbjct: 30 NIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSV 66

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 47.4 bits (113), Expect = 5e-09
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG           +Y+ ++ D   A +DG +  GD++  V
Sbjct: 41 SIGGGA-----QYCPCLYIVQVFDNTPAALDGTVAAGDEITGV 78

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 48.8 bits (115), Expect = 5e-09
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 8  NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I+GG+G   N   P D+GI+VT++   G A     LQ GDK+I  
Sbjct: 7  SISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQA 50

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 46.5 bits (111), Expect = 6e-09
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
          +   + I+V ++   G A  DG L  GD ++ + N TV++  +L
Sbjct: 17 LRLGSQIFVKEMTRTGLATKDGNLHEGDIILKI-NGTVTENMSL 59

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 46.6 bits (111), Expect = 7e-09
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I GG   +         +  I  GG+A   G+L+VG  ++ V
Sbjct: 22 AIEGGANTRQ----PLPRIVTIQRGGSAHNCGQLKVGHVILEV 60

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 46.3 bits (110), Expect = 2e-08
 Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          ++            + I + +I         G L  GD ++++
Sbjct: 32 SLTTTSLR----NKSVITIDRIKPASVVDRSGALHPGDHILSI 70

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 44.6 bits (106), Expect = 3e-08
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
          +   + I+V +I     A  DG +Q GD ++ + N TV++  +L
Sbjct: 17 LRLASHIFVKEISQDSLAARDGNIQEGDVVLKI-NGTVTENMSL 59

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 44.8 bits (106), Expect = 5e-08
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + G +            ++ I     A+  G LQ+GD+++A+
Sbjct: 32 QLQGSVFATETLSS-PPLISYIEADSPAERCGVLQIGDRVMAI 73

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 43.9 bits (104), Expect = 9e-08
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + GG+ +        + V+KI DGG A +  +++ GD+L+ +
Sbjct: 26 TLKGGLEHCE-----PLTVSKIEDGGKAALSQKMRTGDELVNI 63

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 44.6 bits (105), Expect = 1e-07
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 6/43 (13%)

Query: 8   NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           ++ GG+         G++++ ++ GG A   G LQVGD+++ +
Sbjct: 101 SVRGGLEF-----GCGLFISHLIKGGQADSVG-LQVGDEIVRI 137

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 43.2 bits (102), Expect = 2e-07
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          + +          +  ++ GG A+  G L +GD+L A+
Sbjct: 28 VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAI 65

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 42.4 bits (100), Expect = 2e-07
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
          +   + I+V +I     A  DG +Q GD ++ + N TV++  +L
Sbjct: 19 LRLASHIFVKEISQDSLAARDGNIQEGDVVLKI-NGTVTENMSL 61

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 42.0 bits (99), Expect = 4e-07
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 19 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           G    ++ +I DGG       + VGD + ++
Sbjct: 25 NGVGYAFIKRIKDGGVIDSVKTICVGDHIESI 56

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 41.6 bits (98), Expect = 6e-07
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 17 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
          HI     + V  +  GG+A   G+L  GD+++ + N    
Sbjct: 26 HISESLPLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAE 63

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 41.7 bits (98), Expect = 7e-07
 Identities = 9/31 (29%), Positives = 20/31 (64%)

Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
            + + +++I+ GGAA+  G L  GD+++ +
Sbjct: 46 EMDSVIISRIVKGGAAEKSGLLHEGDEVLEI 76

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 41.7 bits (98), Expect = 9e-07
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           +AGG        D GI+V  +++   A  +G L+ GD+++ V
Sbjct: 44 RLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRV 78

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 41.2 bits (97), Expect = 1e-06
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I GG  +       GIYV+ +  G  A+ +G L+VGD+++ V
Sbjct: 26 SIRGGSEH-----GVGIYVSLVEPGSLAEKEG-LRVGDQILRV 62

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 40.4 bits (95), Expect = 2e-06
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          ++ GG  +       GI+V+K+ +G +A+  G L VGDK+  V
Sbjct: 27 SVRGGSEH-----GLGIFVSKVEEGSSAERAG-LCVGDKITEV 63

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 40.5 bits (95), Expect = 2e-06
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I+ G          GI+++ +  G  +   G L++GD+++ V
Sbjct: 32 SISSGPIQ-----KPGIFISHVKPGSLSAEVG-LEIGDQIVEV 68

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 39.6 bits (93), Expect = 3e-06
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          ++A G+       + G+YV  I   G   + G L+  D+L+ V
Sbjct: 24 SVADGLL------EKGVYVKNIRPAGPGDLGG-LKPYDRLLQV 59

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 39.7 bits (93), Expect = 4e-06
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          NI GG  +Q      GI+++K++    A   G LQ GD+++AV
Sbjct: 32 NIRGGKASQL-----GIFISKVIPDSDAHRAG-LQEGDQVLAV 68

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 39.8 bits (93), Expect = 4e-06
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 8/43 (18%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +I  G          GIYV+K+  G  A   G L+ GD+L+  
Sbjct: 35 SIVSG-------EKGGIYVSKVTVGSIAHQAG-LEYGDQLLEF 69

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 39.3 bits (92), Expect = 5e-06
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
                V +I+ GG     G L VGD+++ +
Sbjct: 34 EKQSCTVARILHGGMIHRQGSLHVGDEILEI 64

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 39.4 bits (92), Expect = 7e-06
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I GG          GIY+T +  G  A+  G L+VGD+++ V
Sbjct: 37 TIRGGAEY-----GLGIYITGVDPGSEAEGSG-LKVGDQILEV 73

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 39.0 bits (91), Expect = 7e-06
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAA-QVDGRLQVGDKLIAV 50
          N+ GG           + V+++  G  A     RL  GD+++ +
Sbjct: 34 NVKGGYDQ-----KMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 72

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 38.5 bits (90), Expect = 1e-05
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
              I V +IM GGAA   G + VGD+L  V
Sbjct: 26 QTGAIIVARIMRGGAADRSGLIHVGDELREV 56

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 38.7 bits (90), Expect = 1e-05
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAA-QVDGRLQVGDKLIAV 50
          N+ GG           + V+++  G  A     RL  GD+++ +
Sbjct: 32 NVKGGYDQ-----KMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 70

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 8/49 (16%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
           +AGG        D GI+V  +++   A  +G L+ GD+++ V N   +
Sbjct: 24 RLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFT 64

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          GG     +   + I+V ++ +GG A   G L  GD++I V
Sbjct: 50 GGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKV 88

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 39.5 bits (91), Expect = 2e-05
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 8/49 (16%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
           +AGG        D GI+V  +++   A  +G L+ GD+++ V N   +
Sbjct: 16 RLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFT 56

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 37.8 bits (88), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
             G        GI+V  +  G  A+   +LQV D++IA+ N+  S 
Sbjct: 17 LDFGFTIKWDIPGIFVASVEAGSPAE-FSQLQVDDEIIAINNTKFSY 62

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 38.7 bits (90), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          G IG +    DNGI+V  +     A + G L+ GD+++ +
Sbjct: 16 GKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQI 54

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 39.2 bits (90), Expect = 2e-05
 Identities = 8/38 (21%), Positives = 21/38 (55%)

Query: 13  IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + +        + +  +M+GG A   G+L +GD+++++
Sbjct: 223 VESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSI 260

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 35.3 bits (80), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 23  GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
              +  +M GG A+  G ++VG ++I +   +V
Sbjct: 316 NGIICSLMRGGIAERGG-VRVGHRIIEINGQSV 347

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 37.0 bits (86), Expect = 4e-05
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP 59
              + + +I+ GG     G L VGD +  V    V   P
Sbjct: 27 EGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDP 66

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 36.9 bits (86), Expect = 4e-05
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
            N   V +IM GG     G L VGD++  +
Sbjct: 23 ELNHCIVARIMHGGMIHRQGTLHVGDEIREI 53

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 36.8 bits (86), Expect = 4e-05
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 17 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + G     ++ +M G  A   G L+ GD+++AV
Sbjct: 18 TLSGQAPCVLSCVMRGSPADFVG-LRAGDQILAV 50

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 36.9 bits (86), Expect = 5e-05
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 14 GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
            + + G  G ++ ++  G  A+  G +Q GD+L+AV
Sbjct: 22 EEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAV 57

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 37.8 bits (87), Expect = 5e-05
 Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 7/49 (14%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
          N+             G ++  +     A+  G L+  D+++ V    + 
Sbjct: 25 NLHSD------KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCME 66

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 36.5 bits (85), Expect = 7e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 16 QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
            I G  G ++ ++  GG A + G L+  D +I V    V  
Sbjct: 21 NAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLD 61

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 35.5 bits (82), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 12 GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          G   + + G  G+Y+T I   G A   G +   D LI V
Sbjct: 22 GFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEV 59

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 35.0 bits (81), Expect = 2e-04
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 17 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
           I  D+ + V  +  GG A+  G LQ  D ++ +    V  
Sbjct: 19 TICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEH 58

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 34.9 bits (81), Expect = 2e-04
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          G  G Y+  +  G  A+  G L  GD+L+ V
Sbjct: 25 GKLGQYIRLVEPGSPAEKAG-LLAGDRLVEV 54

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 34.9 bits (81), Expect = 2e-04
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I GG           I VTK+ + G A+ D  L+ GD ++A+
Sbjct: 17 RITGGRDFHT-----PIMVTKVAERGKAK-DADLRPGDIIVAI 53

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 34.9 bits (81), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 9/43 (20%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           IA        PG  G  V +I+D         L+ GD ++ V
Sbjct: 19 TIADS------PGGGGQRVKQIVDSPR---SRGLKEGDLIVEV 52

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 34.9 bits (81), Expect = 3e-04
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 16 QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +  P   G  +  I  G  A+  G L+  D ++AV
Sbjct: 23 RAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAV 56

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 34.8 bits (80), Expect = 3e-04
 Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          + G+  + V  +    +A V G  + GD ++++
Sbjct: 40 LRGNAPVQVHFLDPYCSASVAG-AREGDYIVSI 71

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 6/49 (12%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
           + GG           + ++ + DGG A     +++GD ++++      
Sbjct: 18 RLQGGKDFNM-----PLTISSLKDGGKAA-QANVRIGDVVLSIDGINAQ 60

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 34.7 bits (80), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          I  D+ + V  +  GG A+  G LQ  D ++ +
Sbjct: 32 ICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQL 63

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 17 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + GD  + V  +  GGAA   G ++ GD++I V
Sbjct: 24 TVSGDRIVLVQSVRPGGAAMKAG-VKEGDRIIKV 56

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I+GG           I VTK+ + G A+    L+ GD ++A+
Sbjct: 21 RISGGRDFHT-----PIIVTKVTERGKAEAAD-LRPGDIIVAI 57

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 33.8 bits (78), Expect = 6e-04
 Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + GG           + ++++  GG A   G + VGD ++++
Sbjct: 18 RLQGGKDFNV-----PLSISRLTPGGKAAQAG-VAVGDWVLSI 54

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 33.8 bits (78), Expect = 6e-04
 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 19 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
              G Y+  +  G  A   G L+  D+LI V
Sbjct: 25 KSRPGQYIRSVDPGSPAARSG-LRAQDRLIEV 55

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 34.1 bits (78), Expect = 8e-04
 Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
             G ++  +     A+  G L+  D+++ V    +
Sbjct: 31 SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCM 65

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 33.5 bits (77), Expect = 9e-04
 Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + GG           + ++ + DGG A     +++GD ++++
Sbjct: 20 RLQGGKDFNM-----PLTISSLKDGGKAS-QAHVRIGDVVLSI 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.6
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.53
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.53
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.51
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.51
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.47
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.46
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.45
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.44
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.43
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.43
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.43
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.43
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.42
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.42
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.42
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.42
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.41
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.4
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.39
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.39
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.39
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.39
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.38
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.38
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.38
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.38
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.37
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.37
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.37
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.37
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.37
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.37
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.37
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.36
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.36
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.36
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.36
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.36
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.36
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.36
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.35
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.35
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.35
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.35
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.35
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.34
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.34
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.34
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.34
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.33
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.33
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.33
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.33
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.32
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.32
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.32
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.32
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.32
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.32
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.32
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.31
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.31
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.3
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.3
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.3
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.3
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.3
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.29
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.29
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.29
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.29
2ego_A	96	General receptor for phosphoinositides 1- associat	99.28
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.27
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.27
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.27
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.27
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.27
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.26
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.26
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.25
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.24
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.24
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.24
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.24
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.24
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.23
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.23
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.23
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.23
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.22
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.22
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.22
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.22
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.22
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.21
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.21
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.21
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.21
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.21
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.21
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.21
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.2
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.19
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.19
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.18
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.18
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.18
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.17
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.17
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.17
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.16
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.16
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.15
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.15
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.15
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.14
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.14
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.13
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.13
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.13
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.72
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.12
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.12
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.12
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.12
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.11
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.11
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.11
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.1
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.09
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.09
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.08
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.08
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.07
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.07
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.06
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.06
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.05
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.04
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.01
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.99
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.99
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.98
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.98
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.97
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.97
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.96
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.96
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.96
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.95
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.95
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.94
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.92
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.91
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.9
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.87
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.86
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.84
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.83
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.82
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.76
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.75
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.75
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.75
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.74
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.73
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.71
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.71
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.7
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.66
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.66
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.64
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.61
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.56
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.56
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.56
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.5
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.41
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.39
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.38
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.38
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.37
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.36
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.34
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.34
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.34
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.31
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.26
3k50_A	403	Putative S41 protease; structural genomics, joint	98.25
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.25
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.24
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.23
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.18
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.15
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.12
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.94
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.75
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.58
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.47
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.39

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.60  E-value=2.7e-15  Score=86.18  Aligned_cols=58  Identities=57%  Similarity=0.934  Sum_probs=53.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+++||++.+..+.+.+++|.+|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        13 ~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~   70 (106)
T 4amh_A           13 KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH   70 (106)
T ss_dssp             CCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCH
T ss_pred             CccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            4699999999999887778899999999999999999999999999999999988665

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.53  E-value=3.5e-14  Score=79.26  Aligned_cols=58  Identities=60%  Similarity=0.992  Sum_probs=53.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+.+..+.+.+++|..+.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        14 ~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   71 (94)
T 2fe5_A           14 KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH   71 (94)
T ss_dssp             TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBH
T ss_pred             CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            4699999999998777777899999999999999999999999999999999998754

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.53  E-value=3.7e-14  Score=80.95  Aligned_cols=58  Identities=57%  Similarity=0.956  Sum_probs=52.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+.+..+.+.+++|.+|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        14 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   71 (105)
T 2awx_A           14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTH   71 (105)
T ss_dssp             TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBH
T ss_pred             CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            4799999999987766667799999999999999999999999999999999988765

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.51  E-value=7.4e-14  Score=79.11  Aligned_cols=58  Identities=47%  Similarity=0.743  Sum_probs=52.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+.+..+.+.+++|..+.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        15 ~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   72 (102)
T 2i1n_A           15 SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVH   72 (102)
T ss_dssp             TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCH
T ss_pred             CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            4799999999987766667799999999999999999999999999999999988665

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.51  E-value=6.7e-14  Score=81.71  Aligned_cols=58  Identities=62%  Similarity=0.980  Sum_probs=52.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+.+..+.+.+++|.+|.++|||+++|+|++||+|++|||+++.+++.
T Consensus        35 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~   92 (117)
T 2byg_A           35 KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTH   92 (117)
T ss_dssp             TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            4799999999987766667799999999999999999999999999999999997665

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.47  E-value=1.6e-13  Score=80.45  Aligned_cols=56  Identities=29%  Similarity=0.447  Sum_probs=49.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...  .+.+++|+++.++|||+++|+|++||+|++|||+++.+++.
T Consensus        36 ~~lGf~i~gg~~~~~--~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~   91 (118)
T 3b76_A           36 ESLGMTVAGGASHRE--WDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSR   91 (118)
T ss_dssp             CCCCEEEEECSCSTT--CCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCH
T ss_pred             CccCEEEecCCCCCC--CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            579999999987533  45689999999999999999999999999999999997765

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.46  E-value=2.6e-13  Score=76.73  Aligned_cols=58  Identities=40%  Similarity=0.661  Sum_probs=51.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+.+..+.+.+++|..|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        18 ~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   75 (101)
T 2jik_A           18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH   75 (101)
T ss_dssp             TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCH
T ss_pred             CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            4799999999987655556799999999999999999999999999999999998754

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.45  E-value=1.3e-13  Score=80.27  Aligned_cols=58  Identities=24%  Similarity=0.379  Sum_probs=51.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.|+.+.+....+.+++|.+|.+++||+++|+|++||+|++|||+++.+++.
T Consensus        30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~   87 (117)
T 1ujd_A           30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTY   87 (117)
T ss_dssp             CSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCH
T ss_pred             CcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCH
Confidence            4699999999876654455689999999999999999999999999999999998765

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=6.9e-13  Score=77.25  Aligned_cols=58  Identities=40%  Similarity=0.661  Sum_probs=52.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+.+......+++|..|.+++||+++|+|++||+|++||++++.+.++
T Consensus        28 ~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~   85 (120)
T 2eno_A           28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH   85 (120)
T ss_dssp             SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCH
T ss_pred             CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            4799999999987655556799999999999999999999999999999999999873

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.43  E-value=2.4e-13  Score=78.48  Aligned_cols=55  Identities=25%  Similarity=0.489  Sum_probs=49.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...   ..+++|.++.+++||+++|+|++||+|++|||+++.+++.
T Consensus        25 ~glG~~i~gg~~~~~---~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~   79 (109)
T 1wi4_A           25 TGLGLKILGGINRNE---GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSF   79 (109)
T ss_dssp             SCCCEEEEECSSSSS---CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCH
T ss_pred             CccCEEEEeccCCCC---CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            479999999988654   2379999999999999999999999999999999998764

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.43  E-value=4.2e-13  Score=77.17  Aligned_cols=55  Identities=35%  Similarity=0.572  Sum_probs=48.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.|+.+.+   .+.+++|.+|.+++||+++|+|++||+|++|||+++.+++.
T Consensus        17 ~~lG~~i~g~~~~~---~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~   71 (108)
T 3cbz_A           17 NFLGISIVGQSNER---GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSN   71 (108)
T ss_dssp             CCCCEEEEEECSST---TCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCH
T ss_pred             CccCEEEEcCcCCC---CCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            47999999987642   34699999999999999999999999999999999999654

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.43  E-value=8.7e-13  Score=73.80  Aligned_cols=55  Identities=35%  Similarity=0.555  Sum_probs=48.5

Q ss_pred             cCceEEecCCC---CCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~---~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++.||.+   .+..+.+.+++|.+|.+++||++ | |++||+|++||++++.+.+.
T Consensus        14 ~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~   71 (95)
T 1mfg_A           14 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEH   71 (95)
T ss_dssp             SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBH
T ss_pred             CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCH
Confidence            69999999885   45555667999999999999999 7 99999999999999998765

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.43  E-value=5.1e-13  Score=76.51  Aligned_cols=58  Identities=17%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc------ccccccC
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT------LGYCETG   67 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~------~~~~~~~   67 (69)
                      ..|||+|.++ +      ...+||+++.++|+|++.++|++||+|++|||+++.++++      |+++..|
T Consensus        16 ~~LG~tI~~~-g------~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g   79 (95)
T 3gge_A           16 DSLGLTITDN-G------VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKE   79 (95)
T ss_dssp             SCCCEEEECS-S------SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTT
T ss_pred             CCceEEEEcC-C------CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCC
Confidence            5799999964 1      1258999999999999999999999999999999999887      6666554

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.42  E-value=7.5e-13  Score=74.10  Aligned_cols=56  Identities=29%  Similarity=0.555  Sum_probs=49.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+...  .+.+++|..+.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        16 ~~lG~~i~~g~~~~~--~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   71 (96)
T 1d5g_A           16 NSLGISVTGGVNTSV--RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATH   71 (96)
T ss_dssp             SSCCEEEECCSSSCS--SSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCH
T ss_pred             CCCCEEEECCCCCCC--CcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            479999999987653  34589999999999999999999999999999999997654

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.42  E-value=7.4e-13  Score=73.36  Aligned_cols=53  Identities=36%  Similarity=0.505  Sum_probs=47.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+...     +++|..|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        13 ~g~G~~~~~g~~~~~-----~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~   65 (90)
T 2q9v_A           13 TGFGFRILGGNEPGE-----PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSH   65 (90)
T ss_dssp             TBCCEEEEECSSTTS-----CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCH
T ss_pred             CccCEEEEccccCCC-----CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            468999999876543     79999999999999999999999999999999977654

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.42  E-value=7.1e-13  Score=81.27  Aligned_cols=58  Identities=41%  Similarity=0.639  Sum_probs=53.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+.+...++.+++|..|.+++||+++|+|++||+|++|||+++.+++.
T Consensus        16 ~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   73 (196)
T 3gsl_A           16 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH   73 (196)
T ss_dssp             TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            4799999999998766667799999999999999999999999999999999998876

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.42  E-value=2.9e-13  Score=77.70  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=49.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+ +..+.+.+++|.+|.+++||+++|+|++||+|++|||+++.+++.
T Consensus        26 ~glG~~i~~~~~-~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~   82 (108)
T 2d92_A           26 KGLGFSILDYQD-PLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSL   82 (108)
T ss_dssp             SCCSEEEEEEEC-SSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCH
T ss_pred             CccCEEEecccc-cCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            479999999876 223345689999999999999999999999999999999988664

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.41  E-value=3.7e-13  Score=79.91  Aligned_cols=56  Identities=20%  Similarity=0.311  Sum_probs=49.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.....  ++.++||..|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        48 ~~lG~~i~gg~~~~~--~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~  103 (131)
T 1wfg_A           48 AMLGLKVVGGKMTES--GRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATF  103 (131)
T ss_dssp             TTTTEEEEEEEECSS--SCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCH
T ss_pred             CCCCEEEecCccCCC--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            369999999987654  45589999999999999999999999999999999988754

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=3.2e-13  Score=77.24  Aligned_cols=58  Identities=33%  Similarity=0.496  Sum_probs=48.4

Q ss_pred             CcCceEEec-CCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAG-GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~G-G~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+ +.+......+.+++|.+|.+++||+++|+|++||+|++|||+++.+++.
T Consensus        20 ~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   78 (107)
T 1wf8_A           20 DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ   78 (107)
T ss_dssp             TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCH
T ss_pred             CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            479999999 3333322345699999999999999999999999999999999988765

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.39  E-value=1.4e-12  Score=80.54  Aligned_cols=56  Identities=34%  Similarity=0.529  Sum_probs=49.6

Q ss_pred             CcCceEEecCCC---CCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~---~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+|||+|.||.+   .+....+.+++|.+|.+++||++ | |++||+|++|||+++.++++
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~   60 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEH   60 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCH
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCH
Confidence            579999999874   45555677999999999999999 7 99999999999999998875

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.39  E-value=1.2e-12  Score=74.79  Aligned_cols=58  Identities=28%  Similarity=0.418  Sum_probs=51.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+.+....+.+++|..|.+++||+++|+|++||+|++|||+++.+++.
T Consensus        25 ~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   82 (108)
T 2jre_A           25 SSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQ   82 (108)
T ss_dssp             SCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCH
T ss_pred             CCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            4699999999876554556699999999999999999999999999999999998643

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.39  E-value=6.8e-13  Score=75.65  Aligned_cols=56  Identities=34%  Similarity=0.533  Sum_probs=49.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+...  ...+++|.+|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        21 ~glG~~i~~~~~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~   76 (106)
T 3axa_A           21 NGMGLSIVAAKGAGQ--DKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ   76 (106)
T ss_dssp             SSCSEEEEEEECSSC--SSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CccCEEEEeecCCCC--CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            479999999876543  34589999999999999999999999999999999997665

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.39  E-value=1.7e-12  Score=75.23  Aligned_cols=58  Identities=19%  Similarity=0.360  Sum_probs=50.0

Q ss_pred             CcCceEEecCCCCCCC----CCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHI----PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~----~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+....    ....+++|..|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        27 ~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~   88 (117)
T 2ehr_A           27 VSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASH   88 (117)
T ss_dssp             SCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCH
T ss_pred             CccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            5799999999875421    234589999999999999999999999999999999988774

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.38  E-value=4.3e-13  Score=79.40  Aligned_cols=56  Identities=21%  Similarity=0.471  Sum_probs=49.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+.+.  .+.+++|.+|.+++||+++|.|++||+|++|||+++.++++
T Consensus        40 ~glG~~i~gg~~~~~--~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~   95 (130)
T 1i16_A           40 AGLGFSLEGGKGSLH--GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTR   95 (130)
T ss_dssp             SSTTEEEECCCCCSS--SCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCH
T ss_pred             CccCEEEecCcCCCC--CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            479999999998654  44589999999999999995599999999999999998755

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.38  E-value=9.5e-13  Score=75.00  Aligned_cols=58  Identities=38%  Similarity=0.694  Sum_probs=50.3

Q ss_pred             CcCceEEecCCCCCC-CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+.+. ...+.+++|..|.+++||+++|+|++||+|++||++++.+++.
T Consensus        18 ~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   76 (105)
T 1wha_A           18 RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH   76 (105)
T ss_dssp             TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCH
T ss_pred             CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            469999999988532 3445699999999999999999999999999999999998654

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.38  E-value=1.3e-12  Score=80.85  Aligned_cols=58  Identities=33%  Similarity=0.474  Sum_probs=50.0

Q ss_pred             CcCceEEec-CCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAG-GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~G-G~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+ +.+......+.+++|.+|.+++||+++|+|++||+|++|||+++.+++.
T Consensus        91 ~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~  149 (170)
T 3egg_C           91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ  149 (170)
T ss_dssp             TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCH
T ss_pred             CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            479999999 4454444456699999999999999999999999999999999988876

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.38  E-value=5.6e-13  Score=76.33  Aligned_cols=54  Identities=24%  Similarity=0.321  Sum_probs=47.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...    ..++|.++.+++||+++|+|++||+|++|||+++.+++.
T Consensus        17 ~glG~~i~gg~~~~~----~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~   70 (103)
T 1ufx_A           17 ATLGIAIEGGANTRQ----PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEH   70 (103)
T ss_dssp             SSCCEEEECBTTSSC----SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBH
T ss_pred             CcCCeEEECCCCCCC----CcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            479999999987643    235999999999999999999999999999999998765

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.37  E-value=1.7e-12  Score=76.00  Aligned_cols=53  Identities=21%  Similarity=0.384  Sum_probs=47.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     +++|.++.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        31 ~~lG~~i~gg~~~~~-----~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~   83 (125)
T 3hpk_A           31 NLIGISIGGGAQYCP-----CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK   83 (125)
T ss_dssp             SCCCEEEEECSSCCS-----SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CCcCEEEeccCCCCC-----CEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            369999999987543     89999999999999999999999999999999997664

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.37  E-value=7.8e-13  Score=72.49  Aligned_cols=52  Identities=17%  Similarity=0.237  Sum_probs=46.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     +++|.+|.+++||+++| |++||+|++|||+++.+.+.
T Consensus        11 ~~~G~~l~gg~~~~~-----~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   62 (85)
T 1rgw_A           11 GPWGFRLQGGKDFNM-----PLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTH   62 (85)
T ss_dssp             SCCCEEECCCGGGTS-----CCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCH
T ss_pred             CccCEEEEeccCCCC-----CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCH
Confidence            468999999887654     89999999999999999 99999999999999998853

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.37  E-value=1.6e-12  Score=73.87  Aligned_cols=53  Identities=28%  Similarity=0.391  Sum_probs=47.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+...     +++|..|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        20 ~g~G~~i~~g~~~~~-----~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~   72 (103)
T 1uep_A           20 SGFGFRILGGDEPGQ-----PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH   72 (103)
T ss_dssp             SSCCEEECCCCSTTS-----CCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCH
T ss_pred             CccCEEEeeecCCCC-----CeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCH
Confidence            468999999886443     89999999999999999999999999999999987653

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.37  E-value=4.3e-13  Score=78.32  Aligned_cols=56  Identities=39%  Similarity=0.629  Sum_probs=48.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+.+.  ++.+++|++|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        36 ~glGf~l~~g~~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~   91 (117)
T 2fne_A           36 DGLGFSIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTH   91 (117)
T ss_dssp             TBTSEEEEEEEEETT--EEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CcccEEEecccCCCC--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            479999999987543  34589999999999999999999999999999999997654

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.37  E-value=2.3e-12  Score=70.65  Aligned_cols=52  Identities=19%  Similarity=0.383  Sum_probs=46.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.+|.+..     .+++|..+.+++||+++|+|++||+|++|||+++.+.+
T Consensus        11 ~g~G~~i~~~~~~~-----~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~   62 (85)
T 2i04_A           11 RGFGFTVVGGDEPD-----EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT   62 (85)
T ss_dssp             TBSSEEEEECCSTT-----BCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred             CCCCEEEEcccCCC-----CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence            46899999987643     38999999999999999999999999999999998764

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.37  E-value=8.4e-13  Score=73.10  Aligned_cols=52  Identities=17%  Similarity=0.329  Sum_probs=46.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     +++|..+.+++||+++| |++||+|++|||+++.+.+.
T Consensus        13 ~~~G~~l~gg~~~~~-----~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   64 (89)
T 2q3g_A           13 APWGFRLQGGKDFNV-----PLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTH   64 (89)
T ss_dssp             SCCCEEEEEEGGGTE-----EEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCH
T ss_pred             CcccEEEECcCCCCC-----CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            468999999887544     89999999999999999 99999999999999987644

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.37  E-value=1.4e-12  Score=71.98  Aligned_cols=51  Identities=16%  Similarity=0.319  Sum_probs=46.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.+|.+...     +++|..+.+++||+++| |++||+|++|||+++.+.+
T Consensus        13 ~~~G~~l~~g~~~~~-----~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   63 (88)
T 2uzc_A           13 APWGFRLQGGKDFNM-----PLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMT   63 (88)
T ss_dssp             SCCCEEEEEEGGGTE-----EEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCC
T ss_pred             CcccEEEECcCCCCC-----CeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            468999999887554     89999999999999999 9999999999999999885

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.36  E-value=1.8e-12  Score=74.32  Aligned_cols=56  Identities=25%  Similarity=0.490  Sum_probs=49.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+.+.  ...+++|..|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        19 ~glG~~l~~g~~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   74 (110)
T 1um1_A           19 SGLGMGLIDGMHTHL--GAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGY   74 (110)
T ss_dssp             TCCCEEEEETTTSTT--CCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCH
T ss_pred             CccCEEEeCCcCCCC--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            469999999987653  45689999999999999999999999999999999987655

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.36  E-value=2.5e-12  Score=72.87  Aligned_cols=55  Identities=36%  Similarity=0.654  Sum_probs=48.2

Q ss_pred             cCceEEecCCCCCC-------CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          4 APIYNIAGGIGNQH-------IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         4 ~lG~~i~GG~~~~~-------~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .|||++.|+.+...       .+...+++|..|.++|||+++| |++||+|++|||+++.+.+
T Consensus        20 ~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   81 (104)
T 3sfj_A           20 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVT   81 (104)
T ss_dssp             ECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred             cccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            59999999987532       1345689999999999999999 9999999999999998877

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.36  E-value=3.5e-12  Score=72.85  Aligned_cols=58  Identities=33%  Similarity=0.547  Sum_probs=48.9

Q ss_pred             CcCceEEecCCCC---CCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGN---QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~---~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.|+.+.   +......+++|.+|.+++||+++|.|++||+|++||++++.+.+.
T Consensus        19 ~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~   79 (107)
T 1uhp_A           19 GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATH   79 (107)
T ss_dssp             SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCH
T ss_pred             CccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            4799999999854   233345699999999999999993399999999999999988765

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.36  E-value=5.4e-13  Score=78.19  Aligned_cols=56  Identities=25%  Similarity=0.449  Sum_probs=48.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+.+.  .+.+++|.+|.++|||+++|.|++||+|++|||+++.+++.
T Consensus        36 ~~lGf~i~gg~~~~~--~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~   91 (120)
T 2iwo_A           36 DSLGISIAGGVGSPL--GDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTH   91 (120)
T ss_dssp             -CCCEEEEEEEEETT--EEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBH
T ss_pred             CCCCEEEecccCCCC--CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCH
Confidence            379999999987543  33489999999999999994499999999999999998765

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.36  E-value=1.2e-12  Score=72.13  Aligned_cols=52  Identities=27%  Similarity=0.383  Sum_probs=46.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhc-cCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQV-DGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~-~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+...     +++|.++.++|||++ +| |++||+|++|||+++.+.+.
T Consensus        14 ~~lG~~i~~~~~~~~-----~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~   66 (87)
T 4e34_A           14 EGLGISITGGKEHGV-----PILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKH   66 (87)
T ss_dssp             BCCCEEEEEEGGGTE-----EEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCH
T ss_pred             CcccEEEEccCCCCC-----CEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCH
Confidence            479999999876543     899999999999999 57 99999999999999988765

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.36  E-value=1.4e-12  Score=75.00  Aligned_cols=56  Identities=32%  Similarity=0.464  Sum_probs=48.1

Q ss_pred             CcCceEEec---CCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAG---GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~G---G~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+   |.+..  ....+++|.+|.++|||+++|+|++||+|++|||+++.+++.
T Consensus        15 ~glG~~l~~~~~~~~~~--~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~   73 (113)
T 2g5m_B           15 EGLGISIIGMGAGADMG--LEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ   73 (113)
T ss_dssp             SCCCCEEEEEECCCCSS--SCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCH
T ss_pred             CCCCEEEEecCCCCcCC--CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            479999999   44432  245699999999999999999999999999999999998765

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.36  E-value=1.6e-12  Score=71.72  Aligned_cols=51  Identities=25%  Similarity=0.336  Sum_probs=46.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.+|.+...     +++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus        12 ~~lG~~l~~~~~~~~-----g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~   62 (87)
T 2pa1_A           12 APWGFRITGGRDFHT-----PIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGML   62 (87)
T ss_dssp             SCCSEEEEEEGGGTE-----EEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCC
T ss_pred             CccCEEEecccCCCC-----CEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            468999999887644     89999999999999999 9999999999999999853

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.35  E-value=3.1e-12  Score=71.56  Aligned_cols=57  Identities=30%  Similarity=0.513  Sum_probs=49.5

Q ss_pred             CcCceEEecCCCCCC-CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+.+. .....+++|..|.+++||+++| |++||+|++|||+++.+.+.
T Consensus        14 ~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   71 (97)
T 2w4f_A           14 GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEH   71 (97)
T ss_dssp             TBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCH
Confidence            468999999987532 2345689999999999999999 99999999999999998876

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.35  E-value=1.8e-12  Score=73.86  Aligned_cols=53  Identities=19%  Similarity=0.364  Sum_probs=47.9

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccC-CCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDG-RLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~g-rl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     +++|..|.+++||+++| ||++||+|++|||+++.+++.
T Consensus        29 ~~~G~~~~gg~~~~~-----~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~   82 (107)
T 3nfk_A           29 GRFGFNVKGGYDQKM-----PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTH   82 (107)
T ss_dssp             SCCCEEEEEEGGGTE-----EEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCH
T ss_pred             CCCCEEEEccCCCCC-----CeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCH
Confidence            579999999987544     89999999999999999 699999999999999998765

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=1.9e-12  Score=73.93  Aligned_cols=56  Identities=29%  Similarity=0.555  Sum_probs=49.1

Q ss_pred             CcCceEEe-----cCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIA-----GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~-----GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.     ||.+...  .+.+++|.+|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        20 ~~lG~~i~~~~~~gg~~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   80 (108)
T 1q7x_A           20 NSLGISVTVLFDKGGVNTSV--RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATH   80 (108)
T ss_dssp             CSCCEEESSSSSSBCBCTTS--SSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTT
T ss_pred             CCccEEEEEeccCCCccccC--CCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            47999999     8887653  34589999999999999999999999999999999986654

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=7.2e-13  Score=76.17  Aligned_cols=58  Identities=33%  Similarity=0.477  Sum_probs=50.1

Q ss_pred             CcCceEEecCCCC----CCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGN----QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~----~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+.    +......+++|..|.+++||+++|+|++||+|++|||+++.+++.
T Consensus        21 ~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~   82 (111)
T 1uju_A           21 ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTH   82 (111)
T ss_dssp             CCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCH
T ss_pred             CccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            4799999999853    333456689999999999999999999999999999999997655

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.35  E-value=1.5e-12  Score=72.24  Aligned_cols=53  Identities=30%  Similarity=0.375  Sum_probs=46.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+...     +++|.++.++|||+++|.|++||+|++|||+++.+.+.
T Consensus        16 ~~lG~~i~~~~~~~~-----g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~   68 (90)
T 1qav_A           16 GGLGISIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH   68 (90)
T ss_dssp             TCCCEEEEEEGGGTE-----EEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCH
T ss_pred             CCcCEEEEcccCCCC-----CEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            479999999877543     89999999999999993399999999999999998765

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.34  E-value=2.3e-12  Score=71.53  Aligned_cols=51  Identities=18%  Similarity=0.307  Sum_probs=46.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.+|.+...     +++|..|.++|||+++| |++||+|++|||+++.+.+
T Consensus        13 ~~~G~~l~~~~~~~~-----g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   63 (91)
T 2pkt_A           13 GPWGFRLVGGKDFEQ-----PLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMT   63 (91)
T ss_dssp             SCCSEEEEEEGGGTE-----EEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCC
T ss_pred             CCCCEEEEccCCCCC-----CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence            468999999877544     89999999999999999 9999999999999999888

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.34  E-value=4.2e-12  Score=70.97  Aligned_cols=52  Identities=21%  Similarity=0.470  Sum_probs=46.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+.      .+++|.++.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        16 ~~lG~~~~~~~~~------~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   67 (95)
T 2vwr_A           16 EQLGIKLVRRTDE------PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTP   67 (95)
T ss_dssp             CCCCEEEEECSSS------CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CcccEEEEeccCC------CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            3589999987653      389999999999999999999999999999999998765

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.34  E-value=2.8e-12  Score=71.87  Aligned_cols=57  Identities=21%  Similarity=0.371  Sum_probs=48.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+... ....+++|..+.++|||+++|+|++||+|++|||+++.+++.
T Consensus        14 ~~lG~~i~~~~~~~~-~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~   70 (97)
T 2jil_A           14 NTFGFVIRGGAHDDR-NKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTH   70 (97)
T ss_dssp             TBCSEEEEEECCSCC---CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCH
T ss_pred             CccCEEEeCcccCCC-CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            479999999886542 234589999999999999999999999999999999998543

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.34  E-value=2e-12  Score=72.55  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=49.6

Q ss_pred             CcCceEEecCCCCCC-CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+... .+...+++|..+.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        17 ~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~   75 (98)
T 1ihj_A           17 KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTE   75 (98)
T ss_dssp             SSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCH
T ss_pred             CCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            479999999987543 1234589999999999999999999999999999999998754

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.33  E-value=2.3e-12  Score=73.06  Aligned_cols=55  Identities=35%  Similarity=0.555  Sum_probs=48.0

Q ss_pred             cCceEEecCCC---CCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~---~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++.||.+   .+..+.+.+++|.+|.+++||++ | |++||+|++|||+++.+.+.
T Consensus        22 ~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~   79 (103)
T 1n7t_A           22 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEH   79 (103)
T ss_dssp             CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCH
T ss_pred             CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCH
Confidence            68999999875   44444567999999999999999 7 99999999999999998765

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.33  E-value=4.8e-12  Score=70.28  Aligned_cols=52  Identities=31%  Similarity=0.571  Sum_probs=46.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+.      .+++|..+.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        16 ~~lG~~~~~~~~~------~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   67 (92)
T 2qg1_A           16 KGLGLSIVGKRND------TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQ   67 (92)
T ss_dssp             SCCSEEEECCSSS------CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCH
T ss_pred             CcccEEEEeccCC------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            5789999987642      389999999999999999999999999999999988754

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=4.1e-12  Score=70.59  Aligned_cols=53  Identities=30%  Similarity=0.552  Sum_probs=46.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+...     +++|..|.+++||+++|.|++||+|++|||+++.+.+.
T Consensus        16 ~glG~~l~~~~~~~~-----~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~   68 (93)
T 2dkr_A           16 EGLGFNIMGGKEQNS-----PIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQH   68 (93)
T ss_dssp             TCCCEEEECSSSSSC-----CCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCH
T ss_pred             CCccEEEecccCCCC-----CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            478999999876543     89999999999999995599999999999999997653

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.33  E-value=1.9e-12  Score=75.13  Aligned_cols=54  Identities=19%  Similarity=0.417  Sum_probs=47.9

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.|+.+..    ..+++|..|.+++||+++|+|++||+|++|||+++.+++.
T Consensus        27 ~~lG~~i~g~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~   80 (119)
T 1x6d_A           27 AGLGFSLAGGADLE----NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTH   80 (119)
T ss_dssp             SCCSEEEECCSSSS----CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCH
T ss_pred             CccCEEEeCCCCCC----CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            47999999988752    2489999999999999999999999999999999987665

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.32  E-value=1.1e-12  Score=77.09  Aligned_cols=56  Identities=18%  Similarity=0.307  Sum_probs=49.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcC-CCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS-KGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~-~~~~   60 (69)
                      ..|||++.||.+...  .+.+++|..|.+++||+++|+|++||+|++|||+++. +++.
T Consensus        37 ~~lG~~i~g~~~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~   93 (128)
T 2db5_A           37 GGLGFSVVALRSQNL--GKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISH   93 (128)
T ss_dssp             SCCCCEEEEEECSSS--SCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCH
T ss_pred             CccCEEEecccCCCC--CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCH
Confidence            479999999887653  3458999999999999999999999999999999997 6655

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.32  E-value=5e-12  Score=72.95  Aligned_cols=53  Identities=19%  Similarity=0.466  Sum_probs=47.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+...     +++|..|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        35 ~glG~~l~~~~~~~~-----gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~   87 (112)
T 2r4h_A           35 KGFGFSLRGGREYNM-----DLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKH   87 (112)
T ss_dssp             TBTSEEEEECGGGTC-----CEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCH
T ss_pred             CccCEEEeccccCCC-----CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            368999999876443     89999999999999999999999999999999988754

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.32  E-value=8.9e-12  Score=70.94  Aligned_cols=57  Identities=25%  Similarity=0.426  Sum_probs=48.8

Q ss_pred             CcCceEEecCCCCCC-CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207          3 IAPIYNIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ..|||++.++.+.+. .+.+.+++|.++.+++||+ +| |++||+|++|||+++.+.+.+
T Consensus        19 ~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~   76 (107)
T 2h2b_A           19 FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHA   76 (107)
T ss_dssp             TBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHH
T ss_pred             CccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHH
Confidence            479999999987653 2345699999999999999 87 999999999999999988763

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.32  E-value=7.6e-12  Score=70.17  Aligned_cols=54  Identities=28%  Similarity=0.434  Sum_probs=47.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+...    .+++|..+.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        15 ~~lG~~l~~~~~~~~----~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   68 (98)
T 2opg_A           15 TGLGLSIVGGSDTLL----GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATH   68 (98)
T ss_dssp             TBTCEEEEECTTSTT----CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CcccEEEecCCCCCC----CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCH
Confidence            468999999876542    389999999999999999999999999999999998763

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.32  E-value=7.4e-12  Score=69.39  Aligned_cols=51  Identities=27%  Similarity=0.461  Sum_probs=45.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+.      .+++|..|.++|||+++| |++||+|++|||+++.+.+.
T Consensus        14 ~g~G~~~~~~~~~------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   64 (91)
T 1g9o_A           14 NGYGFHLHGEKGK------LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETH   64 (91)
T ss_dssp             TBCCEEEEECTTC------SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             CcccEEEEecCCC------CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCH
Confidence            4689999987753      389999999999999999 99999999999999998654

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.32  E-value=7.9e-12  Score=71.58  Aligned_cols=57  Identities=30%  Similarity=0.513  Sum_probs=49.5

Q ss_pred             CcCceEEecCCCCCC-CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+... .....+++|..|.+++||+++| |++||+|++|||+++.+.+.
T Consensus        26 ~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   83 (110)
T 1x5q_A           26 GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEH   83 (110)
T ss_dssp             SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCH
Confidence            468999999987532 2345699999999999999999 99999999999999998766

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.32  E-value=2.2e-12  Score=73.53  Aligned_cols=52  Identities=27%  Similarity=0.362  Sum_probs=46.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhcc-CCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVD-GRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~-grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+...     +++|.++.++|||+++ | |++||+|++|||+++.+++.
T Consensus        21 ~~lG~~l~~g~~~~~-----~~~V~~V~~~s~A~~a~g-L~~GD~Il~Ing~~v~~~~~   73 (103)
T 2dc2_A           21 EGLGISITGGKEHGV-----PILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKH   73 (103)
T ss_dssp             SCCCEEEEEEGGGTE-----EEEEEEECTTSHHHHHTC-CCSSEEEEEETTEESTTSCH
T ss_pred             CccCEEEEeccCCCC-----CEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCCCH
Confidence            479999999987543     8999999999999996 6 99999999999999988765

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.31  E-value=4.2e-12  Score=74.57  Aligned_cols=58  Identities=31%  Similarity=0.480  Sum_probs=50.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+........+++|..|.+++||+++|+|++||+|++|||+++.+++.
T Consensus        27 ~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   84 (129)
T 2dmz_A           27 QSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFAN   84 (129)
T ss_dssp             CCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCH
T ss_pred             CCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            4799999998876543445699999999999999999999999999999999998544

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.3e-12  Score=72.10  Aligned_cols=52  Identities=15%  Similarity=0.230  Sum_probs=46.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     +++|..|.+++||+++| |++||+|++|||+++.+.+.
T Consensus        18 ~~~G~~l~gg~~~~~-----~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   69 (94)
T 2eeg_A           18 SPWGFRLVGGRDFSA-----PLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTH   69 (94)
T ss_dssp             SCCSCCEECCTTTTS-----CCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCH
T ss_pred             CccCEEEECccCCCC-----CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            468999999987654     89999999999999999 99999999999999998743

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.30  E-value=8.6e-12  Score=72.97  Aligned_cols=53  Identities=21%  Similarity=0.368  Sum_probs=46.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+..     .+++|..|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        30 ~glG~~~~~g~~~~-----~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~   82 (123)
T 1ueq_A           30 MGFGFTIIGGDEPD-----EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTH   82 (123)
T ss_dssp             TSCSEEEECCSSSS-----CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCH
T ss_pred             CceeEEEecccCCC-----CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            46899999987643     389999999999999999999999999999999987653

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.30  E-value=5.1e-12  Score=73.65  Aligned_cols=53  Identities=23%  Similarity=0.421  Sum_probs=46.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.||.+...    .+++|.+|.++|||+++|.|++||+|++|||+++.+++
T Consensus        28 ~glG~~i~gg~~~~~----~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~   80 (118)
T 1v6b_A           28 GSLDLALEGGVDSPV----GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT   80 (118)
T ss_dssp             SCCCCEEEEBTTSSS----CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCB
T ss_pred             CccCEEEEcccCCCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence            368999999987653    25999999999999999449999999999999999877

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.30  E-value=1.5e-12  Score=73.99  Aligned_cols=52  Identities=15%  Similarity=0.309  Sum_probs=47.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     +++|.+|.+++||+++| |++||+|++|||+++.+++.
T Consensus        15 ~~~G~~l~gg~~~~~-----~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   66 (103)
T 1wf7_A           15 APWGFRLQGGKDFNM-----PLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTH   66 (103)
T ss_dssp             SCCSCCEEEETTTTE-----EEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCH
T ss_pred             CccCEEEeccccCCC-----CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            469999999987644     79999999999999999 99999999999999998754

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.30  E-value=1e-12  Score=77.61  Aligned_cols=57  Identities=33%  Similarity=0.504  Sum_probs=48.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+... ..+.++||.+|.+++||+++|+|++||+|++|||+++.++++
T Consensus        37 ~glG~~i~~~~~~~~-~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~   93 (127)
T 1wg6_A           37 AGLGVSLKGNKSRET-GTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSN   93 (127)
T ss_dssp             TCCCCEEEEEEETTT-TEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCH
T ss_pred             CccCeEEecccCCCC-CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            468999999876521 123489999999999999999999999999999999999874

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.30  E-value=5.4e-12  Score=73.85  Aligned_cols=54  Identities=26%  Similarity=0.431  Sum_probs=48.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+...    .+++|..|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        36 ~glG~~l~~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~   89 (124)
T 2daz_A           36 NGLGLSLAGNKDRSR----MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSH   89 (124)
T ss_dssp             SCCCEEEECBSSTTS----CCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCH
T ss_pred             CccCEEEeccCCCCc----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            479999999876532    489999999999999999999999999999999988765

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.29  E-value=1.1e-11  Score=69.11  Aligned_cols=52  Identities=31%  Similarity=0.365  Sum_probs=44.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++ .     ...+++|.++.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        15 ~~lG~~i~~~-~-----~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~   66 (93)
T 3o46_A           15 EPLGATIKKD-E-----QTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRP   66 (93)
T ss_dssp             SCCCEEEEEC-T-----TTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCH
T ss_pred             CCccEEEEec-C-----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3689999886 1     23489999999999999999999999999999999976654

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.29  E-value=1.2e-11  Score=68.51  Aligned_cols=51  Identities=24%  Similarity=0.387  Sum_probs=45.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+.      .+++|..+.+++||+++| |++||+|++|||+++.+.+.
T Consensus        19 ~~~G~~~~~~~~~------~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   69 (91)
T 1m5z_A           19 EDFGFSVADGLLE------KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDC   69 (91)
T ss_dssp             SSSSEEEEECTTS------SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CCccEEEEeccCC------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4689999987653      389999999999999999 99999999999999998764

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.29  E-value=4.1e-12  Score=73.74  Aligned_cols=51  Identities=18%  Similarity=0.391  Sum_probs=45.9

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhcc--CCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVD--GRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~--grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++.+|.+...     +++|.+|.+++||+++  | |++||+|++|||+++.+.++
T Consensus        28 ~~G~~l~gg~~~~~-----~v~V~~V~~~spA~~a~gG-L~~GD~Il~ing~~v~~~~~   80 (119)
T 2cs5_A           28 RFGFNVKGGYDQKM-----PVIVSRVAPGTPADLCVPR-LNEGDQVVLINGRDIAEHTH   80 (119)
T ss_dssp             CCSEEEEEEGGGTE-----EEEEEEECSSSTTTSSSSC-CCTTCEEEEETTBCTTSSCH
T ss_pred             CcCEEEecccCCCC-----CeEEEEECCCCHHHHhhcC-CCCCCEEEEECCEECCCCCH
Confidence            49999999987543     8999999999999999  6 99999999999999998755

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.29  E-value=1.2e-11  Score=73.52  Aligned_cols=57  Identities=25%  Similarity=0.253  Sum_probs=47.8

Q ss_pred             CcCceEEecCCCCCC-------CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH-------IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-------~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+...       .....+++|.+|.+++||+++| |++||+|++|||+++.+++.
T Consensus        39 ~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~  102 (132)
T 3l4f_D           39 EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH  102 (132)
T ss_dssp             SCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCH
T ss_pred             CcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            479999999986421       1123479999999999999999 99999999999999998765

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.28  E-value=1e-11  Score=69.72  Aligned_cols=56  Identities=20%  Similarity=0.285  Sum_probs=43.9

Q ss_pred             CcCceEEec-CCCCC-CCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAG-GIGNQ-HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~G-G~~~~-~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.+ |.... ....+.+++|..+.+++||+++| |++||+|++|||+++.+++
T Consensus        16 ~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~   73 (96)
T 2ego_A           16 QTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIR   73 (96)
T ss_dssp             CCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCC
T ss_pred             CCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            479999998 33211 11113489999999999999999 9999999999999999864

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.27  E-value=1.9e-11  Score=69.93  Aligned_cols=55  Identities=33%  Similarity=0.445  Sum_probs=47.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+...  ++.+++|..|.+++||+++|+|++||+|++|||+++.+.+
T Consensus        22 ~glG~~~~~~~~~~~--~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~   76 (111)
T 2koj_A           22 EGLGFSITSRDVTIG--GSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKS   76 (111)
T ss_dssp             TBTCEEEEECSCSSS--SSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSC
T ss_pred             CccCEEEEeccCCCC--CCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC
Confidence            468999998765432  3458999999999999999989999999999999998764

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.27  E-value=1.3e-11  Score=70.23  Aligned_cols=52  Identities=31%  Similarity=0.509  Sum_probs=46.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+...     +++|..|.+++||+++| |++||+|++|||+++.+.+.
T Consensus        27 ~~lG~~~~~~~~~~~-----g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   78 (104)
T 1wi2_A           27 AQLGFNIRGGKASQL-----GIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEH   78 (104)
T ss_dssp             CCCSEEEECCSSSCC-----CCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCH
T ss_pred             CCccEEEEcccCCCC-----CEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            468999999876543     89999999999999999 99999999999999998543

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.27  E-value=2.9e-12  Score=74.09  Aligned_cols=56  Identities=25%  Similarity=0.458  Sum_probs=47.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcC-CCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS-KGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~-~~~~   60 (69)
                      ..|||++.++.+...  .+.+++|..|.++|||+++|+|++||+|++|||+++. +++.
T Consensus        32 ~~lG~~i~~~~~~~~--~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~   88 (117)
T 2o2t_A           32 GGLGFSVVGLRSENR--GELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITH   88 (117)
T ss_dssp             SCSSCCEEEEECCC----CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCH
T ss_pred             CCCCEEEeecccCCC--CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCH
Confidence            468999999876532  3458999999999999999999999999999999998 5554

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.27  E-value=1.2e-11  Score=69.89  Aligned_cols=52  Identities=29%  Similarity=0.617  Sum_probs=45.9

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+.      .+++|..|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        22 ~glG~~~~~~~~~------~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   73 (104)
T 3i4w_A           22 TGLGFNIVGGEXG------EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH   73 (104)
T ss_dssp             TBTSEEEEECC-C------CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCH
T ss_pred             CccCEEEECCCCC------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            4689999988652      389999999999999999999999999999999987765

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.27  E-value=1.6e-11  Score=68.87  Aligned_cols=52  Identities=23%  Similarity=0.459  Sum_probs=45.3

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++.++.+..     .+++|..+.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        17 ~lG~~i~~~~~~~-----~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   68 (97)
T 1n7e_A           17 PLGITISGTEEPF-----DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPL   68 (97)
T ss_dssp             CCCEEEECCSSTT-----SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCH
T ss_pred             CcCEEEEcccCCC-----CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            5899999875432     389999999999999999999999999999999987653

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.26  E-value=1.3e-11  Score=69.67  Aligned_cols=52  Identities=29%  Similarity=0.542  Sum_probs=46.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+..     .+++|..|.+++||+++| |++||+|++|||+++.+++.
T Consensus        21 ~~lG~~~~~~~~~~-----~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   72 (101)
T 1uez_A           21 EGLGFSIRGGSEHG-----VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTH   72 (101)
T ss_dssp             TCSSEEEEECTTTT-----CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCH
T ss_pred             CcccEEEeCCCCCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCH
Confidence            36899999887644     389999999999999999 99999999999999998876

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.26  E-value=9e-12  Score=72.19  Aligned_cols=56  Identities=23%  Similarity=0.408  Sum_probs=47.9

Q ss_pred             CcCceEEecCCCCCCC-CCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~-~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+.+.. ++..+++|.+|.+++||+ ++ |++||+|++|||+++.+++.
T Consensus        26 ~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~   82 (117)
T 2csj_A           26 RGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLH   82 (117)
T ss_dssp             STTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCH
T ss_pred             CccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCH
Confidence            5799999999876542 245689999999999997 66 99999999999999988765

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.25  E-value=9.9e-12  Score=73.31  Aligned_cols=53  Identities=19%  Similarity=0.374  Sum_probs=46.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.|+.+..     .+++|.+|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        29 ~g~G~~i~g~~~~~-----~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~   81 (129)
T 2kpk_A           29 RGFGFTVVGGDEPD-----EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH   81 (129)
T ss_dssp             SCCSEEEEEEEETT-----EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCH
T ss_pred             CcccEEEeCccCCC-----CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            36899999987643     389999999999999999999999999999999997653

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.24  E-value=2.9e-11  Score=67.28  Aligned_cols=57  Identities=33%  Similarity=0.511  Sum_probs=47.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+... ....+++|..+.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        15 ~~lG~~i~~~~~~~~-~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~   71 (97)
T 2iwn_A           15 QGLGITIAGYIGDKK-LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTN   71 (97)
T ss_dssp             TBSCEEEECCCCC-----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCH
T ss_pred             CCCcEEEEccCCCCC-CCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCH
Confidence            468999998876432 234589999999999999999999999999999999998764

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.24  E-value=8.2e-12  Score=69.54  Aligned_cols=44  Identities=16%  Similarity=0.211  Sum_probs=39.9

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++.+|            +|.++.+++||+++| |++||+|++|||+++.++++
T Consensus        17 ~~Gf~i~~g------------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~   60 (82)
T 1r6j_A           17 HVGFIFKNG------------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKD   60 (82)
T ss_dssp             CCCEEEETT------------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCH
T ss_pred             CeEEEEECC------------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Confidence            489999865            379999999999999 99999999999999998886

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=1.5e-11  Score=71.49  Aligned_cols=54  Identities=13%  Similarity=0.201  Sum_probs=46.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+...    .+++|.+|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        27 ~~lG~~i~~~~~~~~----~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~   80 (117)
T 1v62_A           27 SALGISLTTTSLRNK----SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSL   80 (117)
T ss_dssp             CCCCCEEEEECCSSS----CEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCH
T ss_pred             CcccEEEEccCCCCC----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            478999998876432    259999999999999999999999999999999977554

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.24  E-value=3.2e-11  Score=66.75  Aligned_cols=50  Identities=24%  Similarity=0.345  Sum_probs=44.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+.      .+++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus        15 ~g~G~~~~~~~~~------~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   64 (90)
T 2he4_A           15 QGYGFNLHSDKSR------PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLR   64 (90)
T ss_dssp             TBCCEEEEECSSS------SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSC
T ss_pred             CCccEEEEccCCC------CCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCC
Confidence            4689999987652      389999999999999999 9999999999999999984

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.24  E-value=3.1e-11  Score=72.31  Aligned_cols=55  Identities=36%  Similarity=0.654  Sum_probs=46.8

Q ss_pred             cCceEEecCCCCCC-------CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          4 APIYNIAGGIGNQH-------IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         4 ~lG~~i~GG~~~~~-------~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .|||++.+|.+...       .+...+++|..|.+++||+++| |++||+|++|||+++.+++
T Consensus        39 ~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~  100 (139)
T 2vz5_A           39 ILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVT  100 (139)
T ss_dssp             ECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred             cccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCC
Confidence            58999999987421       1234699999999999999999 9999999999999999754

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.23  E-value=3e-11  Score=73.95  Aligned_cols=58  Identities=57%  Similarity=0.927  Sum_probs=51.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+....+...+++|..|.++|||+++|+|++||+|++|||+++.+++.
T Consensus       111 ~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~  168 (196)
T 3gsl_A          111 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH  168 (196)
T ss_dssp             TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBH
T ss_pred             CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCH
Confidence            3689999998877665566799999999999999999999999999999999998554

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.23  E-value=2.4e-11  Score=67.97  Aligned_cols=53  Identities=25%  Similarity=0.322  Sum_probs=44.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.+..+.+   ...+++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus        14 ~~~G~~l~~~~~~~---~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   66 (96)
T 2v90_A           14 QGFGFLLREEKGLD---GRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLG   66 (96)
T ss_dssp             TBSCEEEEEEECTT---SCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCC
T ss_pred             CcccEEEEeccCCC---CCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            47899998844322   23489999999999999999 9999999999999999854

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.23  E-value=6.1e-11  Score=67.81  Aligned_cols=57  Identities=26%  Similarity=0.291  Sum_probs=47.2

Q ss_pred             CcCceEEecCCCCCCC-------CCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHI-------PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~-------~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+....       ....+++|..|.+++||+++| |++||+|++|||+++.+.++
T Consensus        19 ~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   82 (109)
T 1q3o_A           19 EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH   82 (109)
T ss_dssp             SCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             CCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4789999998864311       112379999999999999999 99999999999999998843

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.23  E-value=4e-11  Score=70.49  Aligned_cols=58  Identities=21%  Similarity=0.375  Sum_probs=46.3

Q ss_pred             CcCceEEecCCCCCC----CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH----IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~----~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+...    .+...+++|..|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        36 ~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~   97 (123)
T 2iwq_A           36 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASH   97 (123)
T ss_dssp             SCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            368999998765432    1234589999999999999999999999999999999998543

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.22  E-value=6.1e-11  Score=68.20  Aligned_cols=52  Identities=21%  Similarity=0.364  Sum_probs=46.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+...     +++|..|.+++||+++| |++||+|++|||+++.+.+.
T Consensus        27 ~~lG~~l~~~~~~~~-----gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~   78 (114)
T 1x5n_A           27 RGLGCSISSGPIQKP-----GIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDH   78 (114)
T ss_dssp             CCCCEEEEECCSSSC-----SEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCT
T ss_pred             CceeEEEeecCCCCC-----CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            468999999865443     89999999999999999 99999999999999998865

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.22  E-value=2.5e-11  Score=87.78  Aligned_cols=58  Identities=41%  Similarity=0.639  Sum_probs=53.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+.+....+.+++|..|.+++||+++|+|+.||+|++|||+++.++++
T Consensus        70 ~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~  127 (721)
T 2xkx_A           70 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH  127 (721)
T ss_pred             CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            3799999999998766667799999999999999999999999999999999999875

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.22  E-value=3.5e-11  Score=74.68  Aligned_cols=55  Identities=20%  Similarity=0.292  Sum_probs=48.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCC--Ccc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK--GPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~--~~~   60 (69)
                      ..|||++.+|.+....   .+++|..|.++|||+++|+|+.||+|++|||+++.+  .+.
T Consensus        29 ~~lG~~i~~g~~~~~~---~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~   85 (206)
T 3r0h_A           29 KPMGVIVCGGKNNHVT---TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTT   85 (206)
T ss_dssp             SCCCEEEECCSSSSCC---SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCH
T ss_pred             CCcCEEEecccCCCCC---CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCH
Confidence            4789999999986431   489999999999999998899999999999999998  655

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.22  E-value=3.2e-11  Score=66.98  Aligned_cols=38  Identities=24%  Similarity=0.445  Sum_probs=35.7

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      +++|.+|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~   59 (88)
T 3e17_A           22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSL   59 (88)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            79999999999999999999999999999999977665

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=5e-12  Score=71.39  Aligned_cols=52  Identities=25%  Similarity=0.508  Sum_probs=46.1

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++.++.+...     +++|..|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        23 g~G~~~~~~~~~~~-----~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   74 (103)
T 1wfv_A           23 GFGFSIRGGREYKM-----DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTH   74 (103)
T ss_dssp             SSSBCCEEETTTTE-----EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCH
T ss_pred             cCCEEEeccccCCC-----CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            58899988876543     89999999999999999999999999999999998754

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=4.4e-11  Score=67.54  Aligned_cols=57  Identities=21%  Similarity=0.384  Sum_probs=43.9

Q ss_pred             CcCceEEecCCCCCC----CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQH----IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~----~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+...    .+...+++|.+|.++|||+++|+|++||+|++|||+++.+.+
T Consensus        16 ~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~   76 (103)
T 2fcf_A           16 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS   76 (103)
T ss_dssp             CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred             CceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCC
Confidence            368999999765332    122358999999999999999999999999999999999854

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.21  E-value=4.5e-11  Score=69.39  Aligned_cols=50  Identities=22%  Similarity=0.426  Sum_probs=43.3

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCC
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKG   58 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~   58 (69)
                      .|||++.++.+..     .+++|..+.++|||+++|+|++||+|++|||+++.+.
T Consensus        37 ~lG~~l~~~~~~~-----~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~   86 (114)
T 2gzv_A           37 LIGISIGGGAQYC-----PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGK   86 (114)
T ss_dssp             CCSEEEEECCC-------CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTC
T ss_pred             cEeEEEEeCCCCC-----CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCC
Confidence            4899999887643     3899999999999999999999999999999999543

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=6.7e-12  Score=71.07  Aligned_cols=51  Identities=24%  Similarity=0.483  Sum_probs=44.9

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCC
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKG   58 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~   58 (69)
                      ..|||++.+|.+...     +++|.+|.+++||+++|.|++||+|++||++++.+.
T Consensus        21 ~~~G~~~~gg~~~~~-----~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~   71 (100)
T 2edp_A           21 APWGFTLKGGLEHCE-----PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS   71 (100)
T ss_dssp             SCCCCCEEEEGGGTE-----EEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC
T ss_pred             CCcCEEEeccCCCCC-----CeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch
Confidence            368999999887544     899999999999999933999999999999999885

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.21  E-value=6.5e-11  Score=69.16  Aligned_cols=55  Identities=33%  Similarity=0.433  Sum_probs=47.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+...  +..+++|..|.+++||+++|+|++||+|++|||+++.+.+
T Consensus        41 ~~lG~~l~~~~~~~~--g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~   95 (121)
T 2kom_A           41 EGLGFSITSRDVTIG--GSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKS   95 (121)
T ss_dssp             TCCCEEEECCCCSSS--SSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSC
T ss_pred             CcEeEEEEeccCCcC--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCC
Confidence            368999998765432  3458999999999999999999999999999999999864

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.21  E-value=5.6e-12  Score=70.51  Aligned_cols=51  Identities=25%  Similarity=0.370  Sum_probs=45.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.+|.+...     +++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus        16 ~~lG~~l~~g~~~~~-----g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~   66 (94)
T 1vb7_A           16 APWGFRISGGRDFHT-----PIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENML   66 (94)
T ss_dssp             SCCSBCCEEETTTTE-----EEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred             CCccEEEecccCCCC-----CeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCC
Confidence            468999998876443     89999999999999999 9999999999999999873

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.21  E-value=2.2e-11  Score=69.96  Aligned_cols=50  Identities=18%  Similarity=0.320  Sum_probs=43.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+   .     +.+++|++|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        14 ~glG~~i~~---~-----~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~   63 (106)
T 2la8_A           14 KELGLSLSP---N-----EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF   63 (106)
T ss_dssp             STTCCEEEE---C-----SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCH
T ss_pred             CccCEEEEe---C-----CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            467888876   1     2489999999999999999999999999999999998765

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.9e-11  Score=69.22  Aligned_cols=55  Identities=25%  Similarity=0.383  Sum_probs=47.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+..   .+.+++|..|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        22 ~g~G~~l~~~~~~~---~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   76 (104)
T 2djt_A           22 AGFGLTLGGGRDVA---GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTH   76 (104)
T ss_dssp             SSCCEEEECCEETT---EECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCH
T ss_pred             CCccEEEEeccCCC---CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            46899999987652   23489999999999999999999999999999999998653

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=6.2e-11  Score=66.86  Aligned_cols=50  Identities=30%  Similarity=0.529  Sum_probs=44.6

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .|||++.++....     .+++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus        23 ~lG~~~~~~~~~~-----~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~   72 (100)
T 2eeh_A           23 RLGFSVRGGSEHG-----LGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTT   72 (100)
T ss_dssp             SCSEEEECCTTTT-----CCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCC
T ss_pred             CccEEEEccccCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence            4899999876532     389999999999999999 9999999999999999875

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.19  E-value=3.2e-11  Score=67.76  Aligned_cols=50  Identities=18%  Similarity=0.320  Sum_probs=43.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+   .     +.+++|.+|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        20 ~glG~~~~~---~-----~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~   69 (96)
T 2qkv_A           20 KELGLSLSP---N-----EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF   69 (96)
T ss_dssp             BCCCEEEEE---C-----SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCH
T ss_pred             CCccEEEEe---C-----CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            357888776   1     2489999999999999999999999999999999998665

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.19  E-value=8.3e-11  Score=65.95  Aligned_cols=50  Identities=14%  Similarity=0.301  Sum_probs=43.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..+||++.++.+.      .+++|..|.++|||+++| |++||+|++|||+++.+.+
T Consensus        20 ~g~G~~~~~~~~~------~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   69 (98)
T 2jxo_A           20 SGYGFNLHSDKSK------PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ   69 (98)
T ss_dssp             TCCCEEEECCCSS------SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred             CcccEEEEecCCC------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence            4688998876532      389999999999999999 9999999999999999843

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.18  E-value=4.5e-11  Score=68.46  Aligned_cols=51  Identities=33%  Similarity=0.572  Sum_probs=45.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+       .+++|..|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        26 ~~lG~~l~~~~~-------~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   76 (111)
T 2dlu_A           26 SGLGFGIVGGKT-------SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTS   76 (111)
T ss_dssp             SCCCEEEECCSS-------SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCH
T ss_pred             CccCEEEeccCC-------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            468999987654       379999999999999999999999999999999987654

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.18  E-value=2.5e-11  Score=79.72  Aligned_cols=53  Identities=30%  Similarity=0.375  Sum_probs=46.9

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+...     +++|.+|.+++||++++.|++||+|++|||+++.++++
T Consensus        89 ~glGf~I~gg~d~~~-----gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~  141 (263)
T 1z87_A           89 GGLGISIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH  141 (263)
T ss_dssp             CCCCCEEEEETTTTE-----EEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCH
T ss_pred             CCEeEEEeeccCCCC-----CEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCH
Confidence            479999999987654     89999999999999943399999999999999999865

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.18  E-value=6.5e-11  Score=67.45  Aligned_cols=51  Identities=20%  Similarity=0.382  Sum_probs=43.8

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .|||++.+....    +..+++|..+.++|||+++| |++||+|++|||+++.+.+
T Consensus        21 ~~Gf~v~~~~~~----~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~   71 (94)
T 3kzd_A           21 TYGFSLSSVEED----GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALN   71 (94)
T ss_dssp             CCSEEEEEECSS----SSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCC
T ss_pred             CcCEEEEecCCC----CcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence            689999875432    22489999999999999999 9999999999999998754

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.17  E-value=1.7e-11  Score=70.62  Aligned_cols=54  Identities=28%  Similarity=0.455  Sum_probs=46.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+.+.    .+++|..|.+++||+++|+|++||+|++|||+++.+++.
T Consensus        28 ~glG~~l~~~~~~~~----~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   81 (116)
T 2dm8_A           28 SGLGLSIVGGKDTPL----NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSH   81 (116)
T ss_dssp             SCCCCCCBCCTTSSC----SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCH
T ss_pred             CcccEEEeCCCCCCc----CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCH
Confidence            468888888776542    389999999999999999999999999999999998653

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.17  E-value=1.8e-11  Score=72.08  Aligned_cols=58  Identities=26%  Similarity=0.375  Sum_probs=47.3

Q ss_pred             CcCceEEecCCCCCCC----CCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHI----PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~----~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+....    ....+++|++|.++|||+++|+|++||+|++|||+++.+.+.
T Consensus        42 ~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~  103 (128)
T 1nf3_C           42 KPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL  103 (128)
T ss_dssp             SCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCH
T ss_pred             CCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            4699999998753211    112479999999999999999899999999999999977665

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=8.9e-11  Score=67.65  Aligned_cols=56  Identities=21%  Similarity=0.300  Sum_probs=46.3

Q ss_pred             CcCceEEecCCCCCCCC--CCCcEEEEEeCCCChhhc-cCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIP--GDNGIYVTKIMDGGAAQV-DGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~--~~~~i~I~~v~~~g~a~~-~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+.....  -..+++|..|.+++||++ +| |++||+|++|||+++.+.+
T Consensus        22 ~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~   80 (114)
T 1uew_A           22 EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMP   80 (114)
T ss_dssp             SCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSC
T ss_pred             CCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCC
Confidence            46999999987654211  123789999999999999 88 9999999999999999864

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.16  E-value=3.6e-11  Score=74.86  Aligned_cols=52  Identities=25%  Similarity=0.534  Sum_probs=46.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.....     +++|..|.++|||+++| |++||+|++|||+++.+++.
T Consensus        96 ~~lG~~i~~~~~~~~-----~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~  147 (192)
T 3k1r_A           96 EGLGLSVRGGLEFGC-----GLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTH  147 (192)
T ss_dssp             TCCCEEEEEEGGGTE-----EEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCH
T ss_pred             CceeEEEEcccccCC-----CEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            478999999876543     89999999999999999 99999999999999998654

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=8.7e-11  Score=65.21  Aligned_cols=50  Identities=22%  Similarity=0.258  Sum_probs=42.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhc-cCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQV-DGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~-~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.       +.+++|.++.++|||++ +| |++||+|++|||+++.+++.
T Consensus        13 ~~lG~~i~~~~-------~~~~~I~~V~~gspA~~~ag-L~~GD~I~~Ing~~v~~~~~   63 (88)
T 1kwa_A           13 EPMGITLKMNE-------LNHCIVARIMHGGMIHRQGT-LHVGDEIREINGISVANQTV   63 (88)
T ss_dssp             SCCCEEEECSC-------GGGEEEEEECTTSHHHHHTC-CCTTCEEEEETTEEGGGSCH
T ss_pred             CceeEEEEeCC-------CCCEEEEEECCCCHHHHcCC-CCCCCEEEEECCEECCCCCH
Confidence            46899998742       13799999999999999 65 99999999999999986554

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.15  E-value=4.8e-11  Score=66.42  Aligned_cols=50  Identities=22%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+.      .+++|..|.++|||+++| |++||+|++|||+++.+.+
T Consensus        16 ~~~G~~l~~~~~~------~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~   65 (95)
T 3r68_A           16 NGYGFYLRAGPEQ------KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD   65 (95)
T ss_dssp             TBCSCEEEEC--C------CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCC
T ss_pred             CcccEEEEecCCC------CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCC
Confidence            4688888876554      389999999999999999 9999999999999999884

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.15  E-value=1.1e-10  Score=66.39  Aligned_cols=49  Identities=20%  Similarity=0.372  Sum_probs=42.0

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .||+++....       +.+++|.+|.++|||+++|+|++||+|++|||+++.+++
T Consensus        25 ~lG~~l~~~~-------~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~   73 (97)
T 2ejy_A           25 PMGICLKLNE-------KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHS   73 (97)
T ss_dssp             CCSEEEEECT-------TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSC
T ss_pred             CeeEEEEeCC-------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence            5778777532       248999999999999999999999999999999999744

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.14  E-value=1.6e-11  Score=69.72  Aligned_cols=51  Identities=22%  Similarity=0.322  Sum_probs=45.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+...     +++|..|.+++||+++| |++||+|++||++++.+++
T Consensus        15 ~~lG~~l~~g~~~~~-----~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~   65 (103)
T 1v5l_A           15 APWGFRLSGGIDFNQ-----PLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMT   65 (103)
T ss_dssp             SCCSBCCEEETTTTE-----EEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCC
T ss_pred             CCcCEEEeccccCCC-----CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence            468999988876543     89999999999999999 9999999999999999843

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.14  E-value=8.6e-11  Score=68.00  Aligned_cols=52  Identities=29%  Similarity=0.622  Sum_probs=46.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+.      .+++|..|.+++||+++|+|++||+|++|||+++.+.+.
T Consensus        25 ~glG~~l~~~~~~------~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   76 (119)
T 1tp5_A           25 TGLGFNIVGGEDG------EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH   76 (119)
T ss_dssp             SCCCEEEEECGGG------CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCH
T ss_pred             CCccEEEecCCCC------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3589999987642      389999999999999999999999999999999998865

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.13  E-value=1.3e-10  Score=72.06  Aligned_cols=53  Identities=26%  Similarity=0.350  Sum_probs=47.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+...     +++|..+.+++||++++.|++||+|++|||+++.++++
T Consensus        19 ~~lG~~i~~~~~~~~-----~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~   71 (200)
T 2qt5_A           19 TTLGLTVSGGIDKDG-----KPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRH   71 (200)
T ss_dssp             CCCCEEEECCTTSSS-----CSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCH
T ss_pred             CCCCEEEecccCCCC-----CeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            479999999987654     79999999999999993399999999999999999854

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.13  E-value=1.5e-10  Score=68.02  Aligned_cols=49  Identities=27%  Similarity=0.450  Sum_probs=44.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+       .+++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus        39 ~~lG~~l~~~~~-------~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~   87 (124)
T 3tsv_A           39 DSVGLRLAGGND-------VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNII   87 (124)
T ss_dssp             SCCCEEEEECTT-------SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCC
T ss_pred             CceeEEEecCCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence            478999988654       389999999999999999 9999999999999999884

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.13  E-value=1.5e-10  Score=67.84  Aligned_cols=52  Identities=29%  Similarity=0.409  Sum_probs=45.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++....     .+++|..|.+++||+++| |++||+|++|||+++.+.+.
T Consensus        32 ~~lG~~~~~~~~~~-----~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~   83 (128)
T 1uf1_A           32 RSLGLTIRGGAEYG-----LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILH   83 (128)
T ss_dssp             CCCCEEEECCTTTT-----CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCH
T ss_pred             CccCEEEECcccCC-----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCH
Confidence            35899998865432     389999999999999999 99999999999999998764

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.72  E-value=5.7e-12  Score=73.14  Aligned_cols=52  Identities=27%  Similarity=0.383  Sum_probs=45.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhc-cCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQV-DGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~-~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+...     +++|.+|.++|||++ +| |++||+|++|||+++.+.+.
T Consensus        39 ~glG~~l~~g~~~~~-----gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~   91 (112)
T 2lob_A           39 EGLGISITGGKEHGV-----PILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKH   91 (112)
Confidence            468999999876543     899999999999999 77 99999999999999976544

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.12  E-value=2.5e-10  Score=66.60  Aligned_cols=56  Identities=16%  Similarity=0.202  Sum_probs=46.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++...... ...+++|..|.+++||+++|+|++||+|++||++++.+.+
T Consensus        27 ~glG~~l~~~~~~~~~-~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~   82 (122)
T 1v5q_A           27 TGFGIQLQGSVFATET-LSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDST   82 (122)
T ss_dssp             SSSCEEEECCSCCSSS-CSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSC
T ss_pred             CccCEEEecccccCCc-CCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence            5689999998533211 2347999999999999999999999999999999998844

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.12  E-value=1.5e-10  Score=65.72  Aligned_cols=50  Identities=20%  Similarity=0.268  Sum_probs=44.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..+||.+..+.+.      .+++|..|.++|||+++| |++||+|++|||+++.+.+
T Consensus        13 ~~~G~~l~~~~~~------~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   62 (106)
T 3ngh_A           13 QNYGFFLRIEKDT------DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEE   62 (106)
T ss_dssp             CCCCCEEECCTTC------CSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSC
T ss_pred             CeeCEEEEEEeCC------CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence            4688888876432      379999999999999999 9999999999999999887

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.12  E-value=2.1e-10  Score=63.97  Aligned_cols=48  Identities=25%  Similarity=0.447  Sum_probs=42.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+.         .+++|..|.+++||+++| |++||+|++|||+++.+.+.
T Consensus        19 ~~~G~~l~~~---------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   66 (93)
T 2dls_A           19 HGFGFTVSGD---------RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSH   66 (93)
T ss_dssp             SSCCEEEECS---------SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCH
T ss_pred             CceeEEEeCC---------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            3578887642         379999999999999999 99999999999999998765

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.12  E-value=1.3e-10  Score=65.28  Aligned_cols=57  Identities=18%  Similarity=0.051  Sum_probs=45.2

Q ss_pred             CcCceEEecCCCCCCCC--CCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIP--GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~--~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.......  ...+++|..+.++|||+++| |++||+|++|||+++.+++.
T Consensus        13 ~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   71 (99)
T 3khf_A           13 KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVH   71 (99)
T ss_dssp             CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            47899998775432111  11267999999999999999 99999999999999996654

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.11  E-value=1.5e-10  Score=65.38  Aligned_cols=50  Identities=22%  Similarity=0.306  Sum_probs=43.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+      ..+++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus        17 ~g~G~~l~~~~~------~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   66 (102)
T 2d90_A           17 NGYGFYLRAGPE------QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD   66 (102)
T ss_dssp             SSSSCEEEECSS------SSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSC
T ss_pred             CCccEEEEeecC------CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence            368999988543      2389999999999999999 9999999999999999875

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=1.4e-10  Score=64.66  Aligned_cols=45  Identities=22%  Similarity=0.319  Sum_probs=40.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV   55 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~   55 (69)
                      ..|||++.+.        ..+++|.+|.+++||+++|.|++||+|++|||+++
T Consensus        18 ~~lG~~i~~~--------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v   62 (91)
T 2e7k_A           18 EHLGVTFRVE--------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV   62 (91)
T ss_dssp             CCCCEEEEES--------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC
T ss_pred             CcEeEEEEec--------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC
Confidence            3689999872        24899999999999999877999999999999999

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.11  E-value=3.7e-11  Score=66.71  Aligned_cols=49  Identities=24%  Similarity=0.435  Sum_probs=40.8

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .|||++.++.+.      .+++|..|.++|||+++| |++||+|++|||+++.+.+
T Consensus        15 ~~G~~l~~~~~~------~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   63 (91)
T 2vsp_A           15 GYGFHLNAIRGL------PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEP   63 (91)
T ss_dssp             BTSCCCBCCTTC------SCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSC
T ss_pred             cccEEEEeccCC------CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            578888765442      378999999999999999 9999999999999998544

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.10  E-value=2e-10  Score=66.37  Aligned_cols=51  Identities=27%  Similarity=0.417  Sum_probs=44.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ..|||++.++.+       .+++|..|.+++||+++| |++||+|++|||+++.+.+.+
T Consensus        30 ~~lG~~~~~~~~-------~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~   80 (117)
T 1uit_A           30 EPLGISIVSGEK-------GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQ   80 (117)
T ss_dssp             CCCCEEEEECTT-------SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHH
T ss_pred             CCccEEEEccCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHH
Confidence            357888877643       389999999999999999 999999999999999988763

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.09  E-value=4.4e-10  Score=63.55  Aligned_cols=55  Identities=18%  Similarity=0.245  Sum_probs=42.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+....   ....+++|.+|.+++||++++.|++||+|++|||+++.+.+.
T Consensus        21 ~~lG~~i~~~~~~---~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~   75 (101)
T 2yt7_A           21 EGLGVALVESGWG---SLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPL   75 (101)
T ss_dssp             CCCCEEEEECCCS---SSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCH
T ss_pred             CccCEEEEeCCCC---CCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3689999853221   123379999999999999965599999999999999955443

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=7.5e-11  Score=66.97  Aligned_cols=51  Identities=25%  Similarity=0.383  Sum_probs=43.9

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+      +.+++|..+.+++||+++| |++||+|++|||+++.+.+.
T Consensus        19 ~~~G~~l~~~~~------~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   69 (106)
T 2eei_A           19 GSYGFSLKTVQG------KKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASH   69 (106)
T ss_dssp             SSCSCCEECCSS------CCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCH
T ss_pred             CCCCEEEEeccC------CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            468888887643      2489999999999999999 99999999999999987654

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=3e-10  Score=63.01  Aligned_cols=48  Identities=21%  Similarity=0.243  Sum_probs=41.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+.         .+++|..+.+++||+++| |++||+|++|||+++.+.+.
T Consensus        14 ~g~G~~l~~~---------~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   61 (91)
T 2f5y_A           14 DGFGFTICCD---------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKC   61 (91)
T ss_dssp             TBTSEEEECS---------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CCccEEEecC---------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            3578888653         268999999999999999 99999999999999997643

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=4.1e-10  Score=62.98  Aligned_cols=45  Identities=24%  Similarity=0.557  Sum_probs=38.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|            +|++|.++|||+++| |++||+|++|||+++.+.+.
T Consensus        24 ~~lG~~~~~G------------~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~   68 (90)
T 1y7n_A           24 YQLGFSVQNG------------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPH   68 (90)
T ss_dssp             SCCCEEEETT------------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCH
T ss_pred             cccCeEecCC------------EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4678877542            899999999999999 99999999999999975443

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.07  E-value=2e-10  Score=65.12  Aligned_cols=57  Identities=18%  Similarity=0.147  Sum_probs=45.1

Q ss_pred             CcCceEEecCCCCC--CCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQ--HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~--~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+.....  ......+++|..|.+++||+++| |++||+|++|||+++.+++.
T Consensus        27 ~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   85 (104)
T 2z17_A           27 ETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTY   85 (104)
T ss_dssp             SCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCH
T ss_pred             CCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCH
Confidence            46899999843211  11234589999999999999999 99999999999999985543

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.07  E-value=4.7e-10  Score=64.63  Aligned_cols=48  Identities=19%  Similarity=0.380  Sum_probs=41.9

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .|||++.+.        ..+++|..|.+++||+++|.|++||+|++|||+++.+.+
T Consensus        38 ~lG~~i~~~--------~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~   85 (113)
T 1va8_A           38 PLGATVRNE--------MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKD   85 (113)
T ss_dssp             CCCEEEEEC--------SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCC
T ss_pred             ceeEEEEeC--------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence            688888765        238999999999999999933999999999999999765

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.06  E-value=2.1e-10  Score=66.05  Aligned_cols=50  Identities=20%  Similarity=0.268  Sum_probs=43.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+.      .+++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus        25 ~~~G~~l~~~~~~------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~   74 (114)
T 2edz_A           25 QNYGFFLRIEKDT------DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEE   74 (114)
T ss_dssp             CCCSCEEECCTTC------CSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSC
T ss_pred             CcccEEEEEecCC------CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            5688888765432      489999999999999999 9999999999999998863

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.06  E-value=3.9e-10  Score=69.93  Aligned_cols=55  Identities=16%  Similarity=0.206  Sum_probs=47.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCC
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKG   58 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~   58 (69)
                      ..|||++.+|.+.... ...+++|..+.+++||+++|+|++||+|++|||+++.++
T Consensus        18 ~glG~~i~~~~~~~~~-~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~   72 (196)
T 1p1d_A           18 TGFGIQLQGSVFATET-LSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDS   72 (196)
T ss_dssp             TBCCCEEEECSSCSSS-CSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTS
T ss_pred             CccCEEEeCCcCCCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence            4799999999875431 245899999999999999999999999999999999965

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.05  E-value=7.2e-10  Score=64.69  Aligned_cols=50  Identities=14%  Similarity=0.301  Sum_probs=43.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+.      .+++|..+.+++||+++| |++||+|++|||+++.+++
T Consensus        20 ~g~G~~l~~~~~~------~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   69 (128)
T 2kjd_A           20 SGYGFNLHSDKSK------PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ   69 (128)
T ss_dssp             SSCCEEEEECSSS------CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred             CcccEEEEecCCC------CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            4689999876542      389999999999999999 9999999999999999843

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=4.6e-10  Score=65.63  Aligned_cols=54  Identities=24%  Similarity=0.409  Sum_probs=46.0

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .||+++.......   ...+++|..|.+++||+++|+|++||+|++|||+++.+...
T Consensus        33 ~lG~~~~~~~~~~---~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~   86 (124)
T 1wh1_A           33 KLGLTVCYRTDDE---DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREE   86 (124)
T ss_dssp             CCCEEEECCCCCS---SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHH
T ss_pred             cccEEEEecCCCC---CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCHHH
Confidence            5899988765542   23589999999999999999999999999999999987655

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.01  E-value=1.1e-10  Score=66.74  Aligned_cols=51  Identities=31%  Similarity=0.645  Sum_probs=44.6

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++.++.+      ..+++|..+.+++||+++|+|++||+|++||++++.+.+.
T Consensus        27 glG~~l~~~~~------~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~   77 (113)
T 1um7_A           27 GLGFNIVGGED------GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATH   77 (113)
T ss_dssp             CSSBCCBCCST------TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCH
T ss_pred             cccEEEEeccC------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            57888887754      2489999999999999999899999999999999998754

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.99  E-value=1.7e-10  Score=62.89  Aligned_cols=36  Identities=31%  Similarity=0.515  Sum_probs=34.4

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      +++|..+.+++||+++| |++||+|++|||+++.+.+
T Consensus        24 ~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   59 (83)
T 2kv8_A           24 PCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKAS   59 (83)
T ss_dssp             SCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCC
T ss_pred             CeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            79999999999999999 9999999999999999884

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.99  E-value=1.9e-09  Score=61.62  Aligned_cols=51  Identities=20%  Similarity=0.362  Sum_probs=43.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.+..+      ..+++|..+.+++||+++|.|++||+|++|||+++.+++
T Consensus        13 ~glG~~~~~~~~------~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~   63 (112)
T 1qau_A           13 GGLGFLVKERVS------KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS   63 (112)
T ss_dssp             TBTSEEEEECSS------SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSC
T ss_pred             CceeEEEEecCC------CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence            368999887654      238999999999999999933999999999999999844

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.98  E-value=1.8e-09  Score=59.53  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=34.5

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      +++|.++.++|||+++|+|++||+|++|||+++.+++
T Consensus        24 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~   60 (92)
T 3cyy_A           24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS   60 (92)
T ss_dssp             EEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCC
T ss_pred             CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC
Confidence            8999999999999999989999999999999999443

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.98  E-value=1.7e-09  Score=58.14  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=34.3

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      +++|..+.+++||+++|+|++||+|++|||+++.+++
T Consensus        22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~   58 (81)
T 2rcz_A           22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMS   58 (81)
T ss_dssp             EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCC
T ss_pred             CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC
Confidence            7999999999999999889999999999999999443

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.97  E-value=1.1e-09  Score=60.39  Aligned_cols=48  Identities=27%  Similarity=0.410  Sum_probs=39.5

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEc--CCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV--SKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~--~~~~~   60 (69)
                      .|||++..        ...+++|..|.+++||+++| |++||+|++|||+++  .+...
T Consensus        18 ~lG~~~~~--------~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~   67 (90)
T 2eaq_A           18 DFGFTIKW--------DIPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKE   67 (90)
T ss_dssp             CCSEEEEE--------ETTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHH
T ss_pred             cccEEEEe--------cCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHH
Confidence            46777652        12489999999999999999 999999999999999  44443

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.2e-10  Score=68.37  Aligned_cols=39  Identities=31%  Similarity=0.511  Sum_probs=35.2

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..+++|..|.+++||+++| |++||+|++|||+++.+.+.
T Consensus        60 ~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   98 (126)
T 2yuy_A           60 MDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTY   98 (126)
T ss_dssp             CCCCCBCCCCSSSHHHHHT-CCSSCCCCEETTEECSSCCH
T ss_pred             CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4579999999999999999 99999999999999985543

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.96  E-value=2.1e-09  Score=62.21  Aligned_cols=46  Identities=15%  Similarity=0.121  Sum_probs=39.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCC
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKG   58 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~   58 (69)
                      ..+||++.+.         .+++|..+.+++||+++| |++||+|++|||+++.+.
T Consensus        34 ~~~G~~l~~~---------~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~   79 (109)
T 2vsv_A           34 GDLGFTLRGN---------APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWL   79 (109)
T ss_dssp             GCCCEEEESS---------SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTC
T ss_pred             CceeEEEeCC---------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence            3577877542         268999999999999999 999999999999999965

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.96  E-value=2.1e-09  Score=59.08  Aligned_cols=48  Identities=25%  Similarity=0.349  Sum_probs=38.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.+..+      ..+++|..+ +++||+ +| |++||+|++|||+++.+.+
T Consensus        14 ~g~G~~~~~~~~------~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~   61 (88)
T 3bpu_A           14 MGFGFTIADSPG------GGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALT   61 (88)
T ss_dssp             TBSSCEEEECTT------SSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSC
T ss_pred             CceeEEEEecCC------CCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCC
Confidence            468999886543      237899887 999999 87 9999999999999999874

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=2.9e-10  Score=66.25  Aligned_cols=51  Identities=20%  Similarity=0.382  Sum_probs=43.3

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .|||++.+....    +..+++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus        30 ~~G~~v~~~~~~----~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~   80 (114)
T 2d8i_A           30 TYGFSLSSVEED----GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALN   80 (114)
T ss_dssp             CCCCEEEEEEET----TEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCC
T ss_pred             ccCEEEEecCcC----CcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcC
Confidence            589999874332    11389999999999999999 9999999999999998864

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.95  E-value=3.6e-10  Score=67.14  Aligned_cols=48  Identities=27%  Similarity=0.335  Sum_probs=40.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCC
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKG   58 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~   58 (69)
                      ..|||++.+.        ..+++|..|.+++||+++|+|++||+|++|||+++.+.
T Consensus        38 ~glG~~i~~~--------~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~   85 (126)
T 1wif_A           38 LGLGLVVIQN--------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGY   85 (126)
T ss_dssp             TCCCCCEEEE--------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTC
T ss_pred             ceEeEEEEcC--------CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCC
Confidence            3567766651        24799999999999999999999999999999999643

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.95  E-value=1.2e-09  Score=67.69  Aligned_cols=50  Identities=16%  Similarity=0.298  Sum_probs=42.9

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++        ..+++|.+|.++|+|+++|+|++||+|++|||+++.+.++
T Consensus       125 ~~lG~~~~~~--------~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~  174 (206)
T 3r0h_A          125 KELGLSLSPN--------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF  174 (206)
T ss_dssp             CCCCEEEEEC--------SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCH
T ss_pred             CccCeEEEcC--------CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3578887733        2389999999999999999899999999999999998754

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.94  E-value=1.7e-09  Score=78.30  Aligned_cols=58  Identities=57%  Similarity=0.927  Sum_probs=51.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+....+...+++|+.|.++|+|+++|+|++||+|++|||+++.+.+.
T Consensus       165 ~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~  222 (721)
T 2xkx_A          165 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMH  222 (721)
T ss_pred             CCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCH
Confidence            3689999999877655556799999999999999999999999999999999998764

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.92  E-value=1.6e-09  Score=75.85  Aligned_cols=50  Identities=26%  Similarity=0.440  Sum_probs=45.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||..       .+++|.+|.++|||+++| |++||+|++|||+++.+.+.
T Consensus        11 ~~lG~~i~gg~~-------~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~   60 (468)
T 3shw_A           11 DSVGLRLAGGND-------VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIR   60 (468)
T ss_dssp             SSCCEEEEEETT-------TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCH
T ss_pred             CccceEEEccCc-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            579999998854       389999999999999999 99999999999999998654

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.91  E-value=1.9e-09  Score=73.76  Aligned_cols=50  Identities=26%  Similarity=0.440  Sum_probs=44.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+       .+++|.+|.++|||+++| |++||+|++|||+++.+.+.
T Consensus        19 ~~lG~~i~gg~~-------~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~   68 (391)
T 3tsz_A           19 DSVGLRLAGGND-------VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIR   68 (391)
T ss_dssp             SSCCEEEEEETT-------TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCH
T ss_pred             CceeEEEEecCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            368999998754       389999999999999999 99999999999999988544

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.90  E-value=3.8e-09  Score=65.44  Aligned_cols=55  Identities=22%  Similarity=0.386  Sum_probs=46.1

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .|||.+.+|..... +...+++|.++.+++||+++|+|++||+|++|||+++.+++
T Consensus       118 ~lG~~l~~g~~~~~-~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~  172 (200)
T 2qt5_A          118 TFGFVIRGGAHDDR-NKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTT  172 (200)
T ss_dssp             BCSEEEEEECCSST-TTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC
T ss_pred             CeEEEEECCCCCCc-cCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence            58999998865322 22458999999999999999999999999999999999444

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.87  E-value=6.9e-10  Score=62.65  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=34.4

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .+++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus        36 ~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~   72 (100)
T 1whd_A           36 SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWK   72 (100)
T ss_dssp             SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCC
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence            479999999999999999 9999999999999998754

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=4.2e-10  Score=63.22  Aligned_cols=46  Identities=20%  Similarity=0.282  Sum_probs=39.1

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||.+.+         ..+++|..|.+++||+ +| |++||+|++|||+++.+.+.
T Consensus        22 ~~G~~l~~---------~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~   67 (96)
T 2edv_A           22 DYGFHISE---------SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSW   67 (96)
T ss_dssp             SCSBCCCS---------SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCH
T ss_pred             cccEEEec---------CCCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCH
Confidence            46777765         2489999999999995 76 99999999999999998765

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.84  E-value=7.8e-09  Score=62.64  Aligned_cols=48  Identities=21%  Similarity=0.368  Sum_probs=42.4

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++...        +.+++|..+.+++||+++| |++||+|++|||+++.+.+.
T Consensus        17 ~lG~~~~~~--------~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   64 (166)
T 1w9e_A           17 KIGLRLKSI--------DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSS   64 (166)
T ss_dssp             CCSEEEEEE--------TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             cEeEEEEeC--------CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            578877752        2489999999999999999 99999999999999998876

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.83  E-value=1.2e-08  Score=59.71  Aligned_cols=47  Identities=26%  Similarity=0.270  Sum_probs=38.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.++..        +.+|.++.+  +++.+| |++||+|++|||++++++++
T Consensus        23 ~G~GFsI~~~~~--------g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h   69 (113)
T 3soe_A           23 KGFGFAIADSPT--------GQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTH   69 (113)
T ss_dssp             TBSSEEEEEETT--------EEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCH
T ss_pred             CcccEEEeCCCC--------CcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCH
Confidence            478999975432        567999988  566676 99999999999999999875

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.82  E-value=1e-08  Score=59.15  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=37.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcC
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS   56 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~   56 (69)
                      .++||.+..        .+.+.+|.+|.++|||+++| |++||+|++|||+++.
T Consensus        28 ~g~G~~l~~--------~~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~   72 (101)
T 3qik_A           28 EDYGFDIEE--------KNKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVF   72 (101)
T ss_dssp             SSSSEEEEE--------ETTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEEST
T ss_pred             CcccEEEEc--------cCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcC
Confidence            345666653        22378999999999999999 9999999999999985

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.76  E-value=3.7e-09  Score=61.70  Aligned_cols=51  Identities=20%  Similarity=0.362  Sum_probs=42.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.+..+      ..+++|..+.+++||+++|.|++||+|++|||+++.+++
T Consensus        20 ~glG~~~~~~~~------~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~   70 (127)
T 1b8q_A           20 GGLGFLVKERVS------KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS   70 (127)
T ss_dssp             SCCSCCEEECTT------SSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSC
T ss_pred             CcEeEEEEecCC------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence            357887776543      248999999999999999933999999999999999843

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.75  E-value=2.7e-09  Score=61.70  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=32.7

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCC
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKG   58 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~   58 (69)
                      +++|..+.+++||+++| |++||+|++|||+++.+.
T Consensus        37 ~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~   71 (111)
T 1vae_A           37 PVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWL   71 (111)
T ss_dssp             SCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSC
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence            68999999999999999 999999999999999943

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.75  E-value=1e-08  Score=64.53  Aligned_cols=39  Identities=18%  Similarity=0.326  Sum_probs=36.4

Q ss_pred             CcEEEEEeCCCChhhccCCCCCC-CEEEEECCEEcCCCccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVG-DKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~g-D~il~vng~~~~~~~~~   61 (69)
                      .+++|..|.++|||+++| |++| |+|++|||+++.+.+.+
T Consensus        16 ~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~   55 (209)
T 3rle_A           16 EGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDT   55 (209)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSH
T ss_pred             CEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHH
Confidence            489999999999999999 9999 99999999999987764

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.75  E-value=4.2e-09  Score=71.73  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=44.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+.....   ...+++|..+.++|||+++|+|++||+|++|||+++.+++.
T Consensus       216 e~lG~~i~~~~~g~---~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~  270 (388)
T 3suz_A          216 EILGVVVVESGWGS---ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPL  270 (388)
T ss_dssp             CCCCCCCBCC---C---CSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCS
T ss_pred             CceeEEEEecCCCC---cCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCH
Confidence            36889888843211   22368999999999999999999999999999999998854

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.74  E-value=8.2e-09  Score=65.90  Aligned_cols=50  Identities=14%  Similarity=0.301  Sum_probs=42.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      ..|||++.++.+.      .+++|..|.+++||+++| |+.||+|++|||+++.+++
T Consensus        20 ~glG~~l~~~~~~------~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s   69 (216)
T 2krg_A           20 SGYGFNLHSDKSK------PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ   69 (216)
T ss_dssp             SSSCEEECCCSSS------CSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCC
T ss_pred             CCceEEEEecCCC------CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            3688888876542      379999999999999999 9999999999999998443

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.73  E-value=2.6e-08  Score=61.60  Aligned_cols=52  Identities=23%  Similarity=0.371  Sum_probs=44.0

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCC
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKG   58 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~   58 (69)
                      .|||++.......   ...+++|.++.+++||+++|+|++||+|++|||+++.+.
T Consensus       120 ~lG~~~~~~~~~~---~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~  171 (196)
T 1p1d_A          120 ELGITISSPSSRK---PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSC  171 (196)
T ss_dssp             CCCCEEECSCSSS---TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGC
T ss_pred             CcCEEEECCCCCC---CCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCC
Confidence            5788887754432   235899999999999999999999999999999999884

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.71  E-value=5e-08  Score=54.71  Aligned_cols=47  Identities=23%  Similarity=0.285  Sum_probs=37.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+..        .+++|..+.+.  |+++| |++||+|++|||+++.+++.
T Consensus        21 ~g~G~~i~~~~--------~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~   67 (96)
T 1ujv_A           21 QGFGFTIADSP--------TGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSH   67 (96)
T ss_dssp             SSSSEEEEEET--------TEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCH
T ss_pred             CceeEEEEcCC--------CCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCH
Confidence            46788886322        27999999983  67787 99999999999999998743

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.71  E-value=7.1e-09  Score=60.53  Aligned_cols=52  Identities=8%  Similarity=0.141  Sum_probs=40.9

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCC--CChhhccCCCCCCCEEEEECCEEcCCC
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMD--GGAAQVDGRLQVGDKLIAVRNSTVSKG   58 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~--~g~a~~~grl~~gD~il~vng~~~~~~   58 (69)
                      .+||.+.-....  .....+++|..|.+  ++||+++| |++||+|++|||+++.+.
T Consensus        28 ~~G~~v~l~~~~--~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~   81 (118)
T 2yub_A           28 RRGFSVTVESAS--SNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTL   81 (118)
T ss_dssp             SCSSEEEEECTT--SSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTS
T ss_pred             CceEEEEecccc--ccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCc
Confidence            357776622111  12235899999999  99999999 999999999999999988

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.70  E-value=1.6e-08  Score=57.83  Aligned_cols=40  Identities=25%  Similarity=0.540  Sum_probs=36.4

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ..+++|..+.++|||+++| |++||.|++|||+++.+...+
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~   73 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDV   73 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECCSHHHH
T ss_pred             CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCHHHH
Confidence            4589999999999999999 999999999999999876653

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.66  E-value=2.5e-08  Score=56.98  Aligned_cols=40  Identities=28%  Similarity=0.526  Sum_probs=36.4

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ..+++|..+.+++||+++| |++||+|++|||+++.+...+
T Consensus        34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~   73 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDSSEL   73 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHHHH
T ss_pred             CCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHH
Confidence            4589999999999999999 999999999999999887653

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.66  E-value=3.1e-08  Score=55.89  Aligned_cols=39  Identities=21%  Similarity=0.370  Sum_probs=35.1

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ..+++|..+.+++||+. | |++||+|++|||+++.+...+
T Consensus         6 ~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~~~dl   44 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKSSQEF   44 (100)
T ss_dssp             CCCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSSHHHH
T ss_pred             CCCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCCHHHH
Confidence            45899999999999995 7 999999999999999887653

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.64  E-value=1e-08  Score=57.47  Aligned_cols=39  Identities=21%  Similarity=0.477  Sum_probs=35.1

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ..+++|..+.++|||++ | |++||+|++|||+++.+...+
T Consensus         4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~~~~l   42 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINTSEQI   42 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCCHHHH
T ss_pred             CCcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCHHHH
Confidence            45899999999999998 8 999999999999999887653

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.61  E-value=4.5e-08  Score=57.98  Aligned_cols=40  Identities=18%  Similarity=0.274  Sum_probs=36.0

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ..+++|..+.++|||+ +| |++||+|++|||+++.+...+.
T Consensus        56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~~~~l~   95 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIASSTDLQ   95 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCCHHHHH
T ss_pred             CCCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCCHHHHH
Confidence            3589999999999999 99 9999999999999999876643

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.56  E-value=6.5e-09  Score=58.21  Aligned_cols=37  Identities=27%  Similarity=0.529  Sum_probs=33.4

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      +++|..|.++|||++ | |++||+|++|||+++.+...+
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~~~~l   38 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQSAEKL   38 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSSHHHH
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCCHHHH
Confidence            678899999999999 8 999999999999999877654

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.56  E-value=2.9e-08  Score=54.67  Aligned_cols=38  Identities=24%  Similarity=0.219  Sum_probs=34.5

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ++.|..+.|++||+++| |++||.|++|||+++.+...+
T Consensus        20 G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~~~d~   57 (87)
T 2i6v_A           20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVM   57 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCHHHH
T ss_pred             EEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCCHHHH
Confidence            67888899999999999 999999999999999987664

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.56  E-value=4.8e-08  Score=54.82  Aligned_cols=38  Identities=18%  Similarity=0.124  Sum_probs=34.0

Q ss_pred             EEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        24 i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      -+|..|.+++||+++| |++||+|++|||+.+.+...+.
T Consensus         4 p~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~d~~   41 (95)
T 3id1_A            4 PVVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVR   41 (95)
T ss_dssp             CBEEEECTTSHHHHTT-CCTTCEEEEETTEECSSHHHHH
T ss_pred             CEEEeeCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHH
Confidence            3688999999999999 9999999999999999876643

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.50  E-value=3.6e-08  Score=54.25  Aligned_cols=38  Identities=24%  Similarity=0.397  Sum_probs=33.8

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      +++|..+.+++||+++| |+.||+|++|||+++.+...+
T Consensus         5 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~   42 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVTF   42 (91)
T ss_dssp             -CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCCHHHH
T ss_pred             CeEEEEECCCChHHhcC-CCCCCEEEEECCeEcCCHHHH
Confidence            46789999999999999 999999999999999887653

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.41  E-value=2.2e-07  Score=52.72  Aligned_cols=39  Identities=23%  Similarity=0.217  Sum_probs=34.3

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ++.|....|++||+++| |++||+|++|||+++.+...+.
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~d~~   76 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMN   76 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTTHHH
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHH
Confidence            56788888888889999 9999999999999999887643

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.39  E-value=2.1e-07  Score=62.48  Aligned_cols=41  Identities=17%  Similarity=0.455  Sum_probs=37.4

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ..+++|..|.+++||+++| |++||+|++|||+++.+...|.
T Consensus       262 ~~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~~~~~l~  302 (345)
T 3stj_A          262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELR  302 (345)
T ss_dssp             CSSEEEEEECTTSHHHHHT-CCTTCEECEETTEECSCHHHHH
T ss_pred             CceEEEEEeccCChHHHcC-CCCCCEEEEECCEECCCHHHHH
Confidence            3589999999999999999 9999999999999999877644

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.38  E-value=3.1e-07  Score=60.67  Aligned_cols=40  Identities=30%  Similarity=0.399  Sum_probs=36.5

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ..+++|..|.+++||+++| |++||+|++|||+++.+...+
T Consensus       243 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~l  282 (318)
T 1te0_A          243 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISALET  282 (318)
T ss_dssp             CCCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCCHHHH
T ss_pred             CCcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCCHHHH
Confidence            3589999999999999999 999999999999999886654

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.38  E-value=6.2e-07  Score=61.73  Aligned_cols=41  Identities=27%  Similarity=0.447  Sum_probs=36.9

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ..+++|..+.+++||+++| |++||+|++|||+++.+...+.
T Consensus       362 ~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~  402 (436)
T 4a8c_A          362 GKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMR  402 (436)
T ss_pred             CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHH
Confidence            3589999999999999999 9999999999999998876643

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.37  E-value=6.2e-07  Score=52.76  Aligned_cols=41  Identities=17%  Similarity=0.241  Sum_probs=36.2

Q ss_pred             CCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        20 ~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ...+++|..+.+++||+++  |++||+|++|||+++.+...+.
T Consensus        23 ~~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~~~dl~   63 (125)
T 2hga_A           23 QPDGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSNLTTYS   63 (125)
T ss_dssp             CCCCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSSHHHHH
T ss_pred             CCCceEEEEECCCChHHHh--cCCCCEEEEECCEEcCCHHHHH
Confidence            3458999999999999998  9999999999999999876543

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.36  E-value=3.7e-07  Score=60.61  Aligned_cols=41  Identities=24%  Similarity=0.494  Sum_probs=37.3

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ..+++|..|.+++||+++| |++||+|++|||+++.+...+.
T Consensus       255 ~~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~~~~l~  295 (325)
T 1lcy_A          255 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDVY  295 (325)
T ss_dssp             SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHHHHH
T ss_pred             CCCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCCHHHHH
Confidence            3589999999999999999 9999999999999999876644

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.34  E-value=1.1e-06  Score=53.05  Aligned_cols=35  Identities=17%  Similarity=0.238  Sum_probs=32.7

Q ss_pred             EEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         25 YVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        25 ~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      +|..+.+++||+++| |++||+|++||++++.+.+.
T Consensus       110 ~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~  144 (166)
T 1w9e_A          110 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKD  144 (166)
T ss_dssp             EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCH
T ss_pred             EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCCh
Confidence            899999999999999 99999999999999988754

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.34  E-value=5.2e-07  Score=56.64  Aligned_cols=39  Identities=21%  Similarity=0.245  Sum_probs=35.0

Q ss_pred             CcEEEEEeCCCChhhccCCCCC-CCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQV-GDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~-gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|..|.++|||+++| |++ ||+|++||++ +.+...+.
T Consensus       112 ~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~~~~l~  151 (209)
T 3rle_A          112 NVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNESEDLF  151 (209)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCSSSCHH
T ss_pred             cceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCCHHHHH
Confidence            489999999999999999 999 9999999998 87776643

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.34  E-value=4.1e-07  Score=60.09  Aligned_cols=40  Identities=23%  Similarity=0.399  Sum_probs=36.6

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      ..+++|..+.+++||+++| |++||+|++|||+++.+...+
T Consensus       241 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~l  280 (324)
T 1y8t_A          241 TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADAL  280 (324)
T ss_dssp             SSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCSHHHH
T ss_pred             CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHHHH
Confidence            4589999999999999999 999999999999999987654

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.31  E-value=6e-07  Score=61.80  Aligned_cols=41  Identities=17%  Similarity=0.455  Sum_probs=37.2

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ..+++|..|.++|||+++| |+.||+|++|||+++.+...+.
T Consensus       262 ~~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~~~~l~  302 (436)
T 4a8c_A          262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELR  302 (436)
T ss_pred             CcceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHH
Confidence            3589999999999999999 9999999999999999876643

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.26  E-value=7.4e-07  Score=61.74  Aligned_cols=40  Identities=18%  Similarity=0.483  Sum_probs=37.0

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|..|.++|||+++| |+.||+|++|||+++.+...+.
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~~~~l~  321 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVK  321 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHHHHH
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence            589999999999999999 9999999999999999877643

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.25  E-value=2.1e-06  Score=59.00  Aligned_cols=36  Identities=19%  Similarity=0.376  Sum_probs=33.7

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      .++|..|.++|||+++| |++||+|++|||+++.+..
T Consensus        91 ~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~  126 (403)
T 3k50_A           91 NALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV  126 (403)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT
T ss_pred             eEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh
Confidence            47999999999999999 9999999999999998765

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.25  E-value=1.2e-07  Score=64.57  Aligned_cols=35  Identities=26%  Similarity=0.568  Sum_probs=0.0

Q ss_pred             EEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         25 YVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        25 ~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      +|..+.++|+|+++| |++||+|++|||+++.+.+.
T Consensus       318 ~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~  352 (388)
T 3suz_A          318 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAH  352 (388)
T ss_dssp             ------------------------------------
T ss_pred             EEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            889999999999999 99999999999999976543

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.24  E-value=1.2e-06  Score=59.34  Aligned_cols=38  Identities=24%  Similarity=0.394  Sum_probs=35.2

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP   59 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~   59 (69)
                      +.+++|..+.+++||+++| |++||+|++|||+++.+.+
T Consensus        98 ~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~  135 (388)
T 1fc6_A           98 GKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMS  135 (388)
T ss_dssp             SSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCC
T ss_pred             CCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            3589999999999999999 9999999999999999863

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.23  E-value=1.2e-06  Score=58.55  Aligned_cols=40  Identities=35%  Similarity=0.500  Sum_probs=37.1

Q ss_pred             CcEEEEEeCCCChhhccCCCCC-----------CCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQV-----------GDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~-----------gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|..+.+++||+++| |++           ||+|++|||+++.+...+.
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~~dl~  301 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLY  301 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSSHHHH
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCHHHHH
Confidence            589999999999999999 999           9999999999999887644

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.18  E-value=2.6e-06  Score=60.93  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=32.2

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcC
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS   56 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~   56 (69)
                      .+++|..|.++|||+++| |++||+|++|||++++
T Consensus       496 ~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~  529 (597)
T 4fgm_A          496 QGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQAT  529 (597)
T ss_dssp             TEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC
T ss_pred             CeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECC
Confidence            378999999999999999 9999999999999994

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.15  E-value=1.5e-06  Score=60.26  Aligned_cols=40  Identities=23%  Similarity=0.337  Sum_probs=36.4

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|..+.+++||+++| |++||+|++||++++.+...+.
T Consensus       386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~~~~~~  425 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTDVKSLQ  425 (451)
T ss_dssp             EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHHHHH
T ss_pred             CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHH
Confidence            489999999999999999 9999999999999999876543

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.12  E-value=3.4e-07  Score=60.79  Aligned_cols=40  Identities=20%  Similarity=0.484  Sum_probs=0.0

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|..|.+++||+++| |++||+|++|||+++.+...+.
T Consensus       254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~  293 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSANDVS  293 (332)
T ss_dssp             -----------------------------------------
T ss_pred             CceEEEEeccCCChHHcC-CCCCCEEEEECCEECCCHHHHH
Confidence            589999999999999999 9999999999999998776643

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.94  E-value=1.6e-06  Score=59.97  Aligned_cols=40  Identities=20%  Similarity=0.464  Sum_probs=36.9

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|.+|.+++||+++| |++||+|++|||+++.+...+.
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~~~l~  325 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALR  325 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSSHHHH
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence            589999999999999999 9999999999999999887643

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.75  E-value=3.8e-06  Score=58.10  Aligned_cols=40  Identities=28%  Similarity=0.423  Sum_probs=0.0

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|..|.+++||+++| |++||+|++||++++.+...+.
T Consensus       383 ~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~~~~~l~  422 (448)
T 1ky9_A          383 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAELR  422 (448)
T ss_dssp             -----------------------------------------
T ss_pred             CeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECCCHHHHH
Confidence            478999999999999999 9999999999999998776644

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.58  E-value=0.00013  Score=51.95  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..+++|..|.++|||+++  |+.||.|+++||+.+.+...
T Consensus       276 ~~Gv~V~~V~~~spA~~a--l~~GDvI~~idg~~V~~~g~  313 (539)
T 4fln_A          276 NEGVLVRRVEPTSDASKV--LKEGDVIVSFDDLHVGCEGT  313 (539)
T ss_dssp             SBCEEEEEECTTSGGGGT--CCTTCEEEEETTEECBSSSE
T ss_pred             cCceeeecccCCChHHhC--ccCCCEEEEECCEEeCcCCe
Confidence            359999999999999864  99999999999999976543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.47  E-value=7.6e-05  Score=54.79  Aligned_cols=39  Identities=21%  Similarity=0.228  Sum_probs=34.3

Q ss_pred             CCcEEEEEeCCC--------ChhhccC-CCCCCCEEEEECCEEcCCCcc
Q psy12207         21 DNGIYVTKIMDG--------GAAQVDG-RLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus        21 ~~~i~I~~v~~~--------g~a~~~g-rl~~gD~il~vng~~~~~~~~   60 (69)
                      +.+++|..+.++        +||+++| .|+ ||+|++|||+++.+...
T Consensus       747 ~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~~  794 (1045)
T 1k32_A          747 GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGSN  794 (1045)
T ss_dssp             TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTBC
T ss_pred             CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchhh
Confidence            357999999998        9999998 489 99999999999987754

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.39  E-value=0.00022  Score=50.77  Aligned_cols=44  Identities=5%  Similarity=0.055  Sum_probs=39.3

Q ss_pred             CCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccccc
Q psy12207         19 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGY   63 (69)
Q Consensus        19 ~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~~   63 (69)
                      .++.+++|++|.+++++...+ ++.||+|++||++++.+..+|.+
T Consensus       412 ~~~~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s~~~l~~  455 (539)
T 4fln_A          412 RGEQIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRNIHHLAH  455 (539)
T ss_dssp             TTCCCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCSHHHHHH
T ss_pred             CCceEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCCHHHHHH
Confidence            355689999999999999999 99999999999999999888543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	69
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	4e-09
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	1e-08
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	1e-08
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	1e-08
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	7e-08
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	4e-07
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	8e-07
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	2e-06
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	2e-06
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	2e-06
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	2e-06
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	2e-06
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	4e-06
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	4e-06
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	5e-06
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	5e-06
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	6e-06
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	6e-06
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-05
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-05
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	3e-05
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	3e-05
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	4e-05
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	4e-05
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	5e-05
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	6e-05
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	7e-05
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	7e-05
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	7e-05
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-04
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	1e-04
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-04
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	2e-04
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	2e-04
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	2e-04
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	3e-04
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	3e-04
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-04
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	5e-04
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	6e-04
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	6e-04
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	6e-04
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	0.001
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	0.001
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	0.002
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	0.004

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 4e-09
 Identities = 35/48 (72%), Positives = 44/48 (91%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          +IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+ +
Sbjct: 17 SIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 64

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 1e-08
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 8  NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          +I+GG+G   N   P D+GI+VT++   G A     LQ GDK+I     + 
Sbjct: 26 SISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSF 74

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 1e-08
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
           I GG       G+ G Y+ KI+ GG+A+  G+L  G +++      ++
Sbjct: 35 RIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLT 83

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (106), Expect = 1e-08
 Identities = 24/48 (50%), Positives = 31/48 (64%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          +IAGG  N HI  D  I++TKI+ GGAA  DGRL+V D ++ V    V
Sbjct: 17 SIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 7e-08
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 8  NIAGGIGNQHIP-GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
           ++GG  N H   G+  I ++ ++ GG A  DG LQ  D+++ V  + + 
Sbjct: 24 AVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMVNGTPME 71

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (96), Expect = 4e-07
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           I GGI          +Y+ +++ GG    DGRL+ GD+L+++
Sbjct: 23 KILGGINRNE---GPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 62

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 8e-07
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
           G+G        GI+V  + +GGAAQ DGR+QV D+++ V   ++
Sbjct: 22 MGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISL 66

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 2e-06
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
           + GG       G  G ++TK+  G  A V G L+ GD+++      +
Sbjct: 35 KVVGGKMTDL--GRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPL 80

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 2e-06
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          ++ GG G+ H  GD  + + +I  G A++    +Q GD+++ +  + +
Sbjct: 45 SLEGGKGSLH--GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAM 90

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 2e-06
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 8  NIAGGIGNQHIP----GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
          +I GG G            GI++  +++   A  +G L+ GD+++ V    + 
Sbjct: 18 SIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 70

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (92), Expect = 2e-06
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          ++ G   ++    D GI++  I+ GGAA  DGRL++ D+LIAV   T+
Sbjct: 42 SLKGNK-SRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETL 88

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 2e-06
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          +I    G        GIYV  ++ GGAA VDGRL  GD+L++V   ++
Sbjct: 19 SIVAAKGAGQ--DKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 64

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 4e-06
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           +     +     D GIY+++I     A  DGR++ GD++I +
Sbjct: 37 TVCYRTDD---EDDIGIYISEIDPNSIAAKDGRIREGDRIIQI 76

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 4e-06
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          +I GG G+ H  GD  IYV  +   GAA  DGRL+ GD++IAV   ++
Sbjct: 18 SIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSL 63

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.3 bits (89), Expect = 5e-06
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 8  NIAGGIG-NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
           I  G   +       GI++  I+    A + GRL+VGD+++++    V 
Sbjct: 20 CIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVR 69

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (89), Expect = 5e-06
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
           + GG+ +        + V+ + +GGAA+  G +  GD+++A+    V
Sbjct: 33 ALEGGVDSPVGK----VVVSAVYEGGAAERHGGVVKGDEIMAINGKIV 76

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (89), Expect = 6e-06
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 12 GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          G+G   I     + ++ +++ GAA  DG LQ GD LI+V ++ V
Sbjct: 39 GLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANV 82

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 37.9 bits (88), Expect = 6e-06
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          +G  +  GD GIY+  IM GGA   DGR++ GD L+ V +   
Sbjct: 20 VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINF 62

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 8  NIAGGIGNQ-HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          +IAGG G+  +  GD GI+V++I +GGAA   G LQVGD+++++    V
Sbjct: 23 SIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDV 71

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 8  NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          NI GG     N       GI+V+KI+D G A  +G LQ+ D++I V    +
Sbjct: 24 NIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDL 74

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.1 bits (83), Expect = 3e-05
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 8  NIAGGIGNQHIP----GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
           I  G   +          GI++++++ GG A+  G L V D++I V    V
Sbjct: 20 YIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEV 71

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (83), Expect = 3e-05
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 9  IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          I+     +     + + ++ I  G  A   G L++GDKL+A+ N  +
Sbjct: 28 ISSPSSRKP---GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRL 71

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 4e-05
 Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          ++AGG        +  I V ++   G A  +G +Q G++++++   ++
Sbjct: 25 SLAGGADL----ENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSL 68

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 4e-05
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 8  NIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          +IAGG G+      D GI+++++ + G A     ++VGDKL+ V
Sbjct: 24 SIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEV 66

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 5e-05
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
           + GGI        +   V  I     A+  G LQVGD+++++      
Sbjct: 25 QLQGGIFATE-TLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATE 72

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 6e-05
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
           +  G+      G  G+Y+  ++ G  A  DGRL +GD+++ V  S++ 
Sbjct: 24 GLIDGMHTHL--GAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLL 70

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (81), Expect = 7e-05
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 7  YNIAGGIGNQHI-------PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          + + G      I             Y+  + +GG A   G L++GD LI V    V
Sbjct: 21 FVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNV 75

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 7e-05
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
           I GG             +  I  GG+A   G+L+VG  ++ V   T+ 
Sbjct: 22 AIEGGANT----RQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLR 66

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 7e-05
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
           I GG        D  + V  ++  G A  DG+++ GD ++ +    V
Sbjct: 35 TIIGGDEP-----DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCV 77

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (80), Expect = 1e-04
 Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
           + G +        +   ++ I     A+  G LQ+GD+++A+
Sbjct: 32 QLQGSVFATE-TLSSPPLISYIEADSPAERCGVLQIGDRVMAI 73

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.5 bits (79), Expect = 1e-04
 Identities = 9/36 (25%), Positives = 23/36 (63%)

Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
            + I ++ +  GG A+  G + +GD+++A+ +S++
Sbjct: 26 PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSL 61

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 2e-04
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 8  NIAGGI----GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          +I GG     GN   P D GI+++K+   GAA  DGRL+VG +L+ V   ++
Sbjct: 26 SIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSL 77

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 12 GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
          G       G  G Y+  +  G  A+  G L  GD+L+ V    V 
Sbjct: 17 GFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVE 60

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
          G IG +    DNGI+V  +     A + G L+ GD+++ +
Sbjct: 14 GKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQI 52

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
          +I GG  N+       I ++KI  G AA     L VGD +++V    +S
Sbjct: 21 SIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAILSVNGEDLS 64

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 3e-04
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQV-DGRLQVGDKLIAVRNSTVS 56
          N+ GG           + V+++  G  A +   RL  GD+++ +    ++
Sbjct: 25 NVKGGYDQ-----KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 69

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 3e-04
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
           G G   I  D+ + V  +  GG A+  G LQ  D ++ +    V 
Sbjct: 8  DGFG-FTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVE 51

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 5e-04
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 8  NIAGGIGNQHIP--GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
           I   +              + +I+DG  A    +L+VGD+++AV   ++
Sbjct: 27 VIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSI 76

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (75), Expect = 5e-04
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 6  IYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          +  +    G        GIYV  I+  GAA+ DGR+  GD+++AV   ++
Sbjct: 21 VTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSL 70

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.0 bits (75), Expect = 6e-04
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
          ++A G+       + G+YV  I   G     G L+  D+L+ V +    
Sbjct: 24 SVADGLL------EKGVYVKNIRPAGPGD-LGGLKPYDRLLQVNHVRTR 65

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.0 bits (75), Expect = 6e-04
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 12 GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
          G          GI+++ I+ GG A + G L+ GD++++V    + 
Sbjct: 23 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 67

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.5 bits (74), Expect = 6e-04
 Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 9  IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          I        +P    + +  +M GG A+  G+L +GD+++++  +++
Sbjct: 16 IVESGWGSILPT---VIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 59

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.2 bits (73), Expect = 0.001
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
            +G       + + +++I+ GGAA+  G L  GD+++ +    + 
Sbjct: 30 IPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR 75

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (73), Expect = 0.001
 Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 4/40 (10%)

Query: 9  IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 48
          +            + I + +I         G L  GD ++
Sbjct: 33 LTTTSLR----NKSVITIDRIKPASVVDRSGALHPGDHIL 68

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (72), Expect = 0.002
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
            N   V +IM GG     G L VGD++  +   +V+
Sbjct: 23 ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.0 bits (70), Expect = 0.004
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 8  NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
          +I GG   +       +YV ++ + G A  +GR++VGD++I +   + 
Sbjct: 27 SIRGGREYKM-----DLYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.72
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.69
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.65
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.63
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.62
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.61
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.61
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.6
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.6
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.59
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.59
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.58
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.58
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.58
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.57
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.57
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.57
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.56
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.55
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.55
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.54
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.54
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.54
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.54
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.53
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.51
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.51
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.51
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.5
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.5
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.5
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.5
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.5
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.49
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.49
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.49
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.48
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.48
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.48
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.47
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.46
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.46
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.45
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.42
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.42
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.4
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.4
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.39
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.38
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.38
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.37
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.24
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.23
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.16
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.15
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.97
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.91
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.84
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.76
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.72
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.68
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.63
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.49

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.2e-18  Score=93.75  Aligned_cols=58  Identities=60%  Similarity=0.992  Sum_probs=54.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+.+..+.+.++||+++.++|||+++|+|++||+|++|||+++.++++
T Consensus        12 ~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~   69 (92)
T d2fe5a1          12 KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH   69 (92)
T ss_dssp             TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBH
T ss_pred             CccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCH
Confidence            4699999999998877778899999999999999999999999999999999999987

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=2.2e-17  Score=92.15  Aligned_cols=58  Identities=41%  Similarity=0.639  Sum_probs=54.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+.+......++||++|.++|||+++|+|++||+|++|||+++.++++
T Consensus        12 ~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~   69 (93)
T d1rgra_          12 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH   69 (93)
T ss_dssp             SCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCH
T ss_pred             CcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCH
Confidence            4799999999998877777899999999999999999999999999999999999887

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.7e-16  Score=89.82  Aligned_cols=58  Identities=33%  Similarity=0.531  Sum_probs=51.2

Q ss_pred             CcCceEEecCCCCC---CCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQ---HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~---~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+..   ....+.++||++|.++|||+++|+|++||+|++|||+++.++++
T Consensus        19 ~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~   79 (107)
T d1uhpa_          19 GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATH   79 (107)
T ss_dssp             SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCH
T ss_pred             CccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCH
Confidence            36999999998653   33456689999999999999999999999999999999999987

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=88.60  Aligned_cols=56  Identities=34%  Similarity=0.533  Sum_probs=50.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.|+.+...  ...++||+++.++|||+++|+|++||+|++|||+++.++++
T Consensus        14 ~glG~~i~g~~~~~~--~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~   69 (92)
T d1t2ma1          14 NGMGLSIVAAKGAGQ--DKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ   69 (92)
T ss_dssp             SSCCEEEEEECCSSC--CSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCH
T ss_pred             CccCEEEEeecCCCC--CCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCH
Confidence            469999999987654  44589999999999999999999999999999999999987

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.63  E-value=5.8e-16  Score=86.47  Aligned_cols=54  Identities=35%  Similarity=0.597  Sum_probs=49.5

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++.||.+.+   .+.++||+++.|+|||+++|+|++||+|++|||+++.++++
T Consensus        14 ~lGi~i~gg~~~~---~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~   67 (92)
T d2f0aa1          14 FLGISIVGQSNER---GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSN   67 (92)
T ss_dssp             SCCEEEECCCCTT---SCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             ccCEEEEccCCCC---CCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCH
Confidence            6999999998754   34589999999999999999999999999999999999987

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.6e-16  Score=90.66  Aligned_cols=57  Identities=25%  Similarity=0.402  Sum_probs=53.3

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++.||.+.+...++.++||..|.++++|+++|+|++||+|++|||+++.++++
T Consensus        31 glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~   87 (117)
T d1ujda_          31 GLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTY   87 (117)
T ss_dssp             SCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCH
T ss_pred             ccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcH
Confidence            599999999988776677799999999999999999999999999999999999987

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.2e-16  Score=88.39  Aligned_cols=58  Identities=38%  Similarity=0.694  Sum_probs=52.1

Q ss_pred             CcCceEEecCCCCCC-CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+... ...+.++||++|.++|||+++|+|++||+|++|||+++.++++
T Consensus        18 ~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~   76 (105)
T d1whaa_          18 RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH   76 (105)
T ss_dssp             TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCH
T ss_pred             CccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcH
Confidence            469999999987643 4556789999999999999999999999999999999999987

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.9e-16  Score=86.00  Aligned_cols=58  Identities=21%  Similarity=0.383  Sum_probs=46.3

Q ss_pred             CcCceEEecCCCCC----CCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQ----HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~----~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+..    ..+...++||+++.++|||+++|+|++||+|++|||+++.++++
T Consensus        13 ~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~   74 (96)
T d2fcfa1          13 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASH   74 (96)
T ss_dssp             CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCH
Confidence            46999999987542    22334589999999999999999999999999999999999987

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.9e-15  Score=83.45  Aligned_cols=61  Identities=16%  Similarity=0.259  Sum_probs=50.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc------cccccc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT------LGYCET   66 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~------~~~~~~   66 (69)
                      ..|||++.++-....   ..++||.++.|+|||+++|+|++||+|++|||+++.++++      +++|..
T Consensus        10 ~~LGi~i~~~~~~~~---~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~   76 (85)
T d1x45a1          10 EILGVVIVESGWGSI---LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKN   76 (85)
T ss_dssp             SCCCEEEECCTTTSS---SCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CccCEEEEeCCCCCC---CCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            479999986543322   2389999999999999999999999999999999999987      565544

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=5.8e-16  Score=86.23  Aligned_cols=53  Identities=30%  Similarity=0.375  Sum_probs=49.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+++||.+...     ++||+++.|+|||+++|+|++||+|++|||+++.++++
T Consensus        16 ~~lG~~i~gg~~~~~-----~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~   68 (90)
T d1qava_          16 GGLGISIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH   68 (90)
T ss_dssp             TCCCEEEEEEGGGTE-----EEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCH
T ss_pred             CccCEEEEccccCCC-----CEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCH
Confidence            369999999987665     89999999999999999999999999999999999987

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.5e-16  Score=88.48  Aligned_cols=56  Identities=23%  Similarity=0.403  Sum_probs=50.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+.+.  ++.++||..+.++|+|+++|+|++||+|++|||+++.++++
T Consensus        30 ~~lG~~i~gg~~~~~--~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~   85 (108)
T d2cssa1          30 ALLGLKVVGGKMTDL--GRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATN   85 (108)
T ss_dssp             SCSSEEEEEEEECTT--SSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCH
T ss_pred             CCcCEEEeccCCCCC--CCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCH
Confidence            359999999987665  44589999999999999999999999999999999999987

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=6e-16  Score=86.36  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=50.7

Q ss_pred             CcCceEEecCCCCCC-CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+... .....++||+.+.|+|||+++|+|++||+|++|||+++.++++
T Consensus        15 ~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~   73 (94)
T d1ihja_          15 KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTE   73 (94)
T ss_dssp             SSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCH
T ss_pred             CCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCH
Confidence            469999999976543 3345579999999999999999999999999999999999887

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.5e-16  Score=90.35  Aligned_cols=56  Identities=21%  Similarity=0.471  Sum_probs=51.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+...  .+.++||.++.++|+|+++|+|++||+|++|||+++.++++
T Consensus        40 ~glG~~i~gg~~~~~--~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~   95 (130)
T d1i16a_          40 AGLGFSLEGGKGSLH--GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTR   95 (130)
T ss_dssp             SSTTEEEECCCCCSS--SCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCH
T ss_pred             CccCEEEeeccCCCC--CCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcH
Confidence            469999999998655  45689999999999999999999999999999999999887

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.7e-15  Score=84.18  Aligned_cols=57  Identities=30%  Similarity=0.513  Sum_probs=50.9

Q ss_pred             CcCceEEecCCCCCC-CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+|||++.||.+... .....++||+.|.++|||+++| |++||+|++|||+++.++++
T Consensus        19 ~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~   76 (97)
T d1x5qa1          19 GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEH   76 (97)
T ss_dssp             SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCH
Confidence            368999999997653 4456789999999999999999 99999999999999999987

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.4e-15  Score=85.44  Aligned_cols=55  Identities=25%  Similarity=0.489  Sum_probs=49.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+|||++.||.+.+.   ..++||+.+.++|+|+++|+|++||+|++|||+++.++++
T Consensus        18 ~glG~~i~gg~~~~~---~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~   72 (96)
T d1wi4a1          18 TGLGLKILGGINRNE---GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSF   72 (96)
T ss_dssp             SCCCEEEEECSSSSS---CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCH
T ss_pred             CccCEEEEeccCCCC---CCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCH
Confidence            369999999987654   2389999999999999999999999999999999999887

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.7e-16  Score=85.84  Aligned_cols=58  Identities=29%  Similarity=0.338  Sum_probs=49.7

Q ss_pred             CcCceEEecCCC-CCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIG-NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~-~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.|+.. ......+.++||+++.++|||+++|+|++||+|++|||+++.++++
T Consensus        13 ~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~   71 (94)
T d1wf8a1          13 DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ   71 (94)
T ss_dssp             TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCH
T ss_pred             CCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCH
Confidence            469999998653 2333345689999999999999999999999999999999999887

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-15  Score=86.81  Aligned_cols=54  Identities=19%  Similarity=0.410  Sum_probs=49.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...    .++||.++.++|+|+++|+|++||+|++|||+++.++++
T Consensus        20 ~~lG~~i~gg~~~~~----~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~   73 (107)
T d1x6da1          20 AGLGFSLAGGADLEN----KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTH   73 (107)
T ss_dssp             SCCSEEEECCSSSSC----SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCH
T ss_pred             CccCEEEeeccCCCC----CCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCH
Confidence            469999999987532    489999999999999999999999999999999999987

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.6e-16  Score=85.31  Aligned_cols=56  Identities=39%  Similarity=0.629  Sum_probs=50.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...  .+.++||+++.++|+|+++|+|++||+|++|||+++.++++
T Consensus        13 ~~lG~~i~~g~~~~~--~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~   68 (88)
T d2fnea1          13 DGLGFSIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTH   68 (88)
T ss_dssp             TBTSEEEEEEEEETT--EEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CccCEEEEeccCCCC--CCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCH
Confidence            469999999877554  34589999999999999999999999999999999999987

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.2e-15  Score=86.14  Aligned_cols=56  Identities=25%  Similarity=0.490  Sum_probs=50.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.+|.+...  ...++||+++.++|||+++|+|++||+|++|||+++.++++
T Consensus        19 ~glG~~i~~~~~~~~--~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~   74 (110)
T d1um1a_          19 SGLGMGLIDGMHTHL--GAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGY   74 (110)
T ss_dssp             TCCCEEEEETTTSTT--CCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCH
T ss_pred             CCCCEEEEeecCCCC--CCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCH
Confidence            369999999987654  44589999999999999999999999999999999999887

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-15  Score=87.65  Aligned_cols=58  Identities=33%  Similarity=0.485  Sum_probs=51.2

Q ss_pred             CcCceEEecCCCCC----CCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQ----HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~----~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+..    ......++||+++.++|||+++|+|++||+|++|||+++.++++
T Consensus        21 ~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~   82 (111)
T d1ujua_          21 ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTH   82 (111)
T ss_dssp             CCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCH
T ss_pred             CccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCH
Confidence            46999999998643    23455689999999999999999999999999999999999987

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.8e-15  Score=83.34  Aligned_cols=56  Identities=32%  Similarity=0.522  Sum_probs=48.7

Q ss_pred             CcCceEEecCCCC---CCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGN---QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~---~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+.   +..+.+.++||+.|.++|||++  +|++||+|++|||+++.++++
T Consensus        21 ~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~   79 (103)
T d2h3la1          21 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEH   79 (103)
T ss_dssp             SSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCH
T ss_pred             CCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCH
Confidence            3689999999864   3455677999999999999975  599999999999999999987

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=6.7e-15  Score=83.95  Aligned_cols=52  Identities=19%  Similarity=0.345  Sum_probs=47.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+.      .++||+.+.++|||+++|+|++||+|++|||+++.++++
T Consensus        13 ~glG~~i~~~~~~------~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~   64 (112)
T d1qaua_          13 GGLGFLVKERVSK------PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSY   64 (112)
T ss_dssp             TBTSEEEEECSSS------SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCH
T ss_pred             CcEeEEEEeecCC------CCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCH
Confidence            4699999988663      279999999999999999999999999999999999987

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=6.1e-15  Score=83.75  Aligned_cols=52  Identities=31%  Similarity=0.509  Sum_probs=48.2

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     ++||+.|.+++||+++| |++||+|++|||+++.++++
T Consensus        27 ~~lGf~i~gg~~~~~-----gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~   78 (104)
T d1wi2a_          27 AQLGFNIRGGKASQL-----GIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEH   78 (104)
T ss_dssp             CCCSEEEECCSSSCC-----CCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCH
T ss_pred             CCcceEEEccccCCC-----CEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCH
Confidence            479999999987654     89999999999999999 99999999999999999986

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.2e-15  Score=82.29  Aligned_cols=52  Identities=17%  Similarity=0.237  Sum_probs=47.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     ++||..+.+++||++++ |++||+|++|||+++.++++
T Consensus        11 ~~~Gf~i~gg~~~~~-----~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~   62 (85)
T d1rgwa_          11 GPWGFRLQGGKDFNM-----PLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTH   62 (85)
T ss_dssp             SCCCEEECCCGGGTS-----CCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCH
T ss_pred             CCCCEEEEeecCCCC-----CEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCH
Confidence            358999999988654     79999999999999887 99999999999999999987

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=9.3e-15  Score=82.01  Aligned_cols=58  Identities=26%  Similarity=0.391  Sum_probs=48.8

Q ss_pred             CcCceEEecCCCC---CCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGN---QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~---~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++...   .....+.++||+++.++|||+++|+|++||+|++|||+++.++++
T Consensus        15 ~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~   75 (99)
T d1ozia_          15 GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATH   75 (99)
T ss_dssp             SSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCH
T ss_pred             CCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCH
Confidence            3699999875432   222345689999999999999999999999999999999999987

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.7e-15  Score=83.19  Aligned_cols=53  Identities=28%  Similarity=0.391  Sum_probs=48.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     ++||+.+.+++||+++|+|++||+|++|||+++.++++
T Consensus        20 ~glG~~i~gg~~~~~-----~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~   72 (103)
T d1uepa_          20 SGFGFRILGGDEPGQ-----PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH   72 (103)
T ss_dssp             SSCCEEECCCCSTTS-----CCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCH
T ss_pred             ceEeEEEEecccCCC-----cEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCH
Confidence            469999999987544     79999999999999999999999999999999999987

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.3e-15  Score=83.80  Aligned_cols=57  Identities=23%  Similarity=0.249  Sum_probs=50.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+.... ...++||+++.++|||+++|+|++||+|++|||++++++++
T Consensus        20 ~~lG~~i~gg~~~~~~-~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~   76 (99)
T d1x5ra1          20 SGFGLQLQGGIFATET-LSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTM   76 (99)
T ss_dssp             TCCCEEEECCSCSSSB-CSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBH
T ss_pred             CCcCEEEEEeccCCCC-CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            4699999999854432 23489999999999999999999999999999999999987

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-14  Score=82.02  Aligned_cols=52  Identities=21%  Similarity=0.364  Sum_probs=48.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+|||+|.+|.+...     ++||..|.+++||+++| |++||+|++|||+++.++++
T Consensus        20 ~glG~~i~~g~~~~~-----gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~   71 (101)
T d1x5na1          20 RGLGCSISSGPIQKP-----GIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDH   71 (101)
T ss_dssp             CCCCEEEEECCSSSC-----SEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCT
T ss_pred             CcccEEEeccCCCCC-----CEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCH
Confidence            469999999987654     89999999999999998 99999999999999999987

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.6e-15  Score=85.90  Aligned_cols=52  Identities=29%  Similarity=0.416  Sum_probs=48.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     ++||+.|.++++|+++| |++||+|++|||+++.++++
T Consensus        32 ~~lGf~i~gg~~~~~-----gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~   83 (128)
T d1uf1a_          32 RSLGLTIRGGAEYGL-----GIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILH   83 (128)
T ss_dssp             CCCCEEEECCTTTTC-----CCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCH
T ss_pred             CccCEEEEeeccCCC-----CEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCH
Confidence            479999999988654     89999999999999999 99999999999999999987

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=9.8e-15  Score=82.18  Aligned_cols=58  Identities=24%  Similarity=0.402  Sum_probs=49.9

Q ss_pred             CcCceEEecCCCCCCCC----CCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIP----GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~----~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+....+    ...++||+.|.|+|||+++|+|++||+|++|||+++.++++
T Consensus        15 ~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~   76 (98)
T d1rzxa_          15 KPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL   76 (98)
T ss_dssp             SCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCH
T ss_pred             CcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCH
Confidence            46999999998654321    23479999999999999999999999999999999999986

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2e-14  Score=80.38  Aligned_cols=53  Identities=23%  Similarity=0.411  Sum_probs=48.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.|+.+...     ++||.++.+++||+++|+|++||+|++|||+++.++++
T Consensus        14 ~~lG~~i~g~~~~~~-----~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~   66 (95)
T d1n7ea_          14 GPLGITISGTEEPFD-----PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPL   66 (95)
T ss_dssp             SCCCEEEECCSSTTS-----CCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCH
T ss_pred             CcEeEEEEecccCCC-----CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            479999999876443     79999999999999999999999999999999999987

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.7e-14  Score=83.29  Aligned_cols=53  Identities=21%  Similarity=0.365  Sum_probs=48.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     ++||..+.++++|+++|+|++||+|++||++++.++++
T Consensus        30 ~glG~~i~gg~~~~~-----~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~   82 (123)
T d1ueqa_          30 MGFGFTIIGGDEPDE-----FLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTH   82 (123)
T ss_dssp             TSCSEEEECCSSSSC-----CCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCH
T ss_pred             CeeCEEEEeecCCCC-----CEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCH
Confidence            479999999987543     89999999999999999999999999999999999987

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=2.9e-14  Score=83.10  Aligned_cols=57  Identities=16%  Similarity=0.186  Sum_probs=50.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||...... ...++||..+.+++||+++|+|++||+|++||++++.++++
T Consensus        27 ~glGf~i~gg~~~~~~-~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~   83 (122)
T d1v5qa_          27 TGFGIQLQGSVFATET-LSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTF   83 (122)
T ss_dssp             SSSCEEEECCSCCSSS-CSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCH
T ss_pred             CccCEEEecccCCCcc-CCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCH
Confidence            3699999999876432 23479999999999999999999999999999999999887

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=2e-14  Score=80.82  Aligned_cols=55  Identities=22%  Similarity=0.371  Sum_probs=49.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+...   ..++||..+.++|+|+++|+|++||+|++|||+++.++++
T Consensus        22 ~~lG~~v~~~~~~~~---~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~   76 (99)
T d1p1da2          22 VELGITISSPSSRKP---GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSM   76 (99)
T ss_dssp             CCCCCEEECSCSSST---TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCH
T ss_pred             CccCEEEEecCCCCC---CCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCH
Confidence            469999999887544   2379999999999999999999999999999999999987

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.6e-14  Score=83.85  Aligned_cols=54  Identities=22%  Similarity=0.406  Sum_probs=49.8

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+.+.    .++||.++.++|+|+++|+|++||+|++|||+++.++++
T Consensus        28 ~~lG~~i~gg~d~~~----~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~   81 (118)
T d1v6ba_          28 GSLDLALEGGVDSPV----GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTL   81 (118)
T ss_dssp             SCCCCEEEEBTTSSS----CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBH
T ss_pred             CCCCEEEEeeecCCC----CCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcH
Confidence            469999999998764    379999999999999999999999999999999999987

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2e-14  Score=82.39  Aligned_cols=58  Identities=21%  Similarity=0.306  Sum_probs=50.4

Q ss_pred             CcCceEEecCCCCCCC--CCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHI--PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~--~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+.+..  ....++||.++.+++||+++|+|++||+|++|||+++.++++
T Consensus        22 ~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~   81 (114)
T d1uewa_          22 EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPH   81 (114)
T ss_dssp             SCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCH
T ss_pred             CCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcH
Confidence            4699999999876432  224579999999999999999999999999999999999887

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=82.49  Aligned_cols=54  Identities=24%  Similarity=0.321  Sum_probs=49.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+...    ..+||..+.+++||+++|+|++||+|++|||+++.++++
T Consensus        17 ~~lG~~i~gg~~~~~----~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~   70 (103)
T d1ufxa_          17 ATLGIAIEGGANTRQ----PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEH   70 (103)
T ss_dssp             SSCCEEEECBTTSSC----SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBH
T ss_pred             CccCEEEeeecCCCC----CCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcH
Confidence            479999999987543    368999999999999999999999999999999999987

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=3.7e-15  Score=83.40  Aligned_cols=52  Identities=25%  Similarity=0.361  Sum_probs=47.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     ++||..+.+++||++++ |++||+|++||++++.++++
T Consensus        16 ~~~Gf~i~gg~d~~~-----~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~   67 (94)
T d1vb7a_          16 APWGFRISGGRDFHT-----PIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLH   67 (94)
T ss_dssp             SCCSBCCEEETTTTE-----EEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CcCCEEEEeeccCCC-----CEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCH
Confidence            358999999988654     89999999999999987 99999999999999999987

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.7e-14  Score=82.06  Aligned_cols=52  Identities=19%  Similarity=0.412  Sum_probs=47.5

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhc-cCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQV-DGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~-~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++.||.+...     ++||+++.++|||++ +|+|++||+|++|||+++.++++
T Consensus        21 ~lG~~l~gg~d~~~-----~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~   73 (106)
T d2cs5a1          21 RFGFNVKGGYDQKM-----PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTH   73 (106)
T ss_dssp             CCSEEEEEEGGGTE-----EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCH
T ss_pred             CccEEEEeeecCCC-----CEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCH
Confidence            59999999987654     899999999999998 57799999999999999999987

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.2e-14  Score=83.57  Aligned_cols=55  Identities=24%  Similarity=0.380  Sum_probs=49.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.++.+.+.   +.++||..|.++|||+++|+|++||+|++|||+++.+.++
T Consensus        32 ~~lG~~i~~~~~~~~---~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~~~   86 (124)
T d1wh1a_          32 DKLGLTVCYRTDDED---DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREE   86 (124)
T ss_dssp             CCCCEEEECCCCCSS---CCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHH
T ss_pred             CcccEEEEecCCCCC---CCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCCHHH
Confidence            369999999987543   3489999999999999999999999999999999998776

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=2.7e-14  Score=80.95  Aligned_cols=52  Identities=29%  Similarity=0.622  Sum_probs=47.5

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.+|.+.      .++||+.+.++|+|+++|+|++||+|++|||+++.++++
T Consensus        20 ~glG~~i~~~~~~------~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~   71 (102)
T d1tp5a1          20 TGLGFNIVGGEDG------EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH   71 (102)
T ss_dssp             SCCCEEEEECGGG------CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCH
T ss_pred             CcccEEEEeccCC------CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCH
Confidence            3689999998653      279999999999999999999999999999999999987

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.4e-14  Score=79.88  Aligned_cols=52  Identities=29%  Similarity=0.543  Sum_probs=48.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      +.|||+|.||.+...     ++||..+.+++||+++| |++||+|++|||+++.++++
T Consensus        21 ~glG~~i~gg~~~~~-----~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~   72 (101)
T d1ueza_          21 EGLGFSIRGGSEHGV-----GIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTH   72 (101)
T ss_dssp             TCSSEEEEECTTTTC-----CEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCH
T ss_pred             CeeCEEEEecccCCC-----CEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCH
Confidence            469999999988654     89999999999999999 99999999999999999986

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=5.4e-14  Score=78.13  Aligned_cols=51  Identities=24%  Similarity=0.387  Sum_probs=46.7

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.+|.+.      .++||+.|.++|+|+++| |++||+|++|||+++.++++
T Consensus        19 ~~~Gf~i~~~~~~------~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~   69 (91)
T d1m5za_          19 EDFGFSVADGLLE------KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDC   69 (91)
T ss_dssp             SSSSEEEEECTTS------SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CceeEEEeccCCC------CCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCH
Confidence            4699999988654      379999999999999999 99999999999999999987

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.9e-14  Score=82.29  Aligned_cols=53  Identities=13%  Similarity=0.215  Sum_probs=48.1

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||+|.++....    ..++||..|.++++|+++|+|++||+|++||++++.++++
T Consensus        28 ~lGi~i~~~~~~~----~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~   80 (117)
T d1v62a_          28 ALGISLTTTSLRN----KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSL   80 (117)
T ss_dssp             CCCCEEEEECCSS----SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCH
T ss_pred             CcCEEEEeeccCC----CCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCH
Confidence            5999999987643    2489999999999999999999999999999999999987

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.3e-13  Score=77.80  Aligned_cols=57  Identities=25%  Similarity=0.253  Sum_probs=48.8

Q ss_pred             CcCceEEecCCCCCC-------CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH-------IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-------~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.|+...+.       .....+++|..+.++|||+++| |++||+|++|||+++.++++
T Consensus        17 ~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h   80 (104)
T d1q3oa_          17 EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH   80 (104)
T ss_dssp             SCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             CccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCH
Confidence            469999999875432       2234478999999999999999 99999999999999999986

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.1e-14  Score=85.38  Aligned_cols=56  Identities=34%  Similarity=0.518  Sum_probs=50.1

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||+|.||.+.+. ..+.++||+.|.++|+|+++|+|++||+|++|||+++.++++
T Consensus        38 glG~~i~gg~~~~~-~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~   93 (127)
T d1wg6a_          38 GLGVSLKGNKSRET-GTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSN   93 (127)
T ss_dssp             CCCCEEEEEEETTT-TEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCH
T ss_pred             cEeEEEEeecCCCC-CCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCH
Confidence            59999999988654 223489999999999999999999999999999999999987

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-14  Score=82.72  Aligned_cols=53  Identities=25%  Similarity=0.485  Sum_probs=49.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+...     +++|.++.++++|+++|+|++||+|++||++++.++++
T Consensus        22 ~glG~~i~gg~~~~~-----~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~   74 (103)
T d1wfva_          22 KGFGFSIRGGREYKM-----DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTH   74 (103)
T ss_dssp             TSSSBCCEEETTTTE-----EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCH
T ss_pred             CccCEEEEeeccCCC-----CEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcH
Confidence            469999999998765     89999999999999999999999999999999999987

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.3e-13  Score=74.99  Aligned_cols=51  Identities=27%  Similarity=0.461  Sum_probs=46.0

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+.      .++||..+.++|||+++| |++||+|++|||+++.++++
T Consensus        14 ~g~Gf~i~~~~~~------~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~   64 (91)
T d1g9oa_          14 NGYGFHLHGEKGK------LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETH   64 (91)
T ss_dssp             TBCCEEEEECTTC------SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             CeeeEEEEecCCC------CCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4689999987543      379999999999999999 99999999999999999986

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=3.8e-14  Score=80.39  Aligned_cols=52  Identities=15%  Similarity=0.309  Sum_probs=47.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.||.+...     ++||..+.++++|++++ |++||+|++|||+++.++++
T Consensus        15 ~g~Gf~i~gg~d~~~-----~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~~v~~~t~   66 (103)
T d1wf7a_          15 APWGFRLQGGKDFNM-----PLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTH   66 (103)
T ss_dssp             SCCSCCEEEETTTTE-----EEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCH
T ss_pred             CCccEEEEcccCCCC-----CEEEEecCCCChHHHCC-CCCCCEEEEECCEECCCCCH
Confidence            468999999988654     89999999999999866 99999999999999999987

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.1e-13  Score=75.24  Aligned_cols=51  Identities=24%  Similarity=0.304  Sum_probs=45.9

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.++.+       .++||+.+.++|||+++|+|++||+|++|||+++.++++
T Consensus        13 ~~lG~~l~~~~~-------~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~   63 (88)
T d1kwaa_          13 EPMGITLKMNEL-------NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTV   63 (88)
T ss_dssp             SCCCEEEECSCG-------GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCH
T ss_pred             CCccEEEEEcCC-------CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCH
Confidence            479999987632       379999999999999999999999999999999999887

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.2e-13  Score=73.96  Aligned_cols=45  Identities=24%  Similarity=0.557  Sum_probs=41.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||            +|.++.|+|+|++++ |++||+|++|||+++.++++
T Consensus        13 ~~lGf~i~~g------------~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~   57 (79)
T d1y7na1          13 YQLGFSVQNG------------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPH   57 (79)
T ss_dssp             SCCCEEEETT------------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCH
T ss_pred             CCcCEEEECC------------EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCH
Confidence            5799999876            699999999999987 99999999999999999987

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.7e-13  Score=77.59  Aligned_cols=56  Identities=23%  Similarity=0.399  Sum_probs=48.3

Q ss_pred             CcCceEEecCCCCCC-CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~-~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+... .....++||+++.++|||+ + .|++||+|++|||+++.++++
T Consensus        19 ~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~-~L~~GD~Il~INg~~v~~~~~   75 (104)
T d2csja1          19 RGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-G-LLQENDRVVMVNGTPMEDVLH   75 (104)
T ss_dssp             STTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-H-HBCTTCEEEEESSCBCBTCCH
T ss_pred             CCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-c-CCCCCCEEEEECCEECCCCCH
Confidence            469999999997654 3445689999999999996 3 599999999999999999986

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.4e-13  Score=77.75  Aligned_cols=50  Identities=28%  Similarity=0.436  Sum_probs=45.6

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+       .++||+.|.++|||++++ |++||+|++||++++.++++
T Consensus        30 ~glG~~i~gg~~-------~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~   79 (117)
T d1uita_          30 EPLGISIVSGEK-------GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATE   79 (117)
T ss_dssp             CCCCEEEEECTT-------SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCH
T ss_pred             CccCEEEEccCC-------CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCH
Confidence            369999998864       279999999999999998 99999999999999999887

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=4.8e-13  Score=75.41  Aligned_cols=51  Identities=20%  Similarity=0.399  Sum_probs=45.5

Q ss_pred             CCcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          2 CIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         2 ~~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ...|||++.++.        .++||+++.++|+|+++|+|++||+|++|||+++.++++
T Consensus        29 ~~~lG~~v~~~~--------~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~   79 (100)
T d1va8a1          29 DIPLGATVRNEM--------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDV   79 (100)
T ss_dssp             TCCCCEEEEECS--------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCH
T ss_pred             CCCccEEEEecC--------CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCH
Confidence            356899997642        379999999999999999999999999999999999987

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5e-13  Score=72.18  Aligned_cols=48  Identities=21%  Similarity=0.243  Sum_probs=43.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+|||++.++         .++||+++.++|||+++| |++||+|++|||++++++++
T Consensus         8 ~g~Gf~l~~~---------~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~   55 (77)
T d2f5ya1           8 DGFGFTICCD---------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKC   55 (77)
T ss_dssp             TBTSEEEECS---------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CcccEEEECC---------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            3689999853         268999999999999999 99999999999999999987

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=7.5e-14  Score=79.24  Aligned_cols=52  Identities=21%  Similarity=0.314  Sum_probs=47.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.||.+...     ++||+.+.++++|++++ |++||+|++||++++.++++
T Consensus        15 ~~~Gf~l~gg~d~~~-----~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~   66 (103)
T d1v5la_          15 APWGFRLSGGIDFNQ-----PLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTH   66 (103)
T ss_dssp             SCCSBCCEEETTTTE-----EEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCH
T ss_pred             CCCCEEEEeecCCCC-----CEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCH
Confidence            458999999998654     89999999999999877 99999999999999999986

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.7e-13  Score=72.79  Aligned_cols=44  Identities=16%  Similarity=0.211  Sum_probs=40.7

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++.+|            +|+++.++|||+++| |++||+|++|||+++.++++
T Consensus        17 ~~Gf~i~~g------------~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~   60 (82)
T d1r6ja_          17 HVGFIFKNG------------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKD   60 (82)
T ss_dssp             CCCEEEETT------------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCH
T ss_pred             CcCEEEEEE------------EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCH
Confidence            489999865            599999999999999 99999999999999999987

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.3e-12  Score=70.44  Aligned_cols=48  Identities=19%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++..+.        .++||.++.++|||+++| |++||+|++|||+++.+++.
T Consensus        15 ~lG~~l~~~~--------~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~   62 (85)
T d1w9ea1          15 KIGLRLKSID--------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSS   62 (85)
T ss_dssp             CCSEEEEEET--------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             CEeEEEEeCC--------CCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCH
Confidence            5889887653        389999999999999999 99999999999999998865

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.24  E-value=1.5e-11  Score=67.95  Aligned_cols=51  Identities=22%  Similarity=0.271  Sum_probs=42.5

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .+|+++....+..     .+++|.++.++|||+++| |++||+|++|||+++.++++
T Consensus         6 GiGi~i~~~~~~~-----~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~   56 (92)
T d1fc6a3           6 GVGLEITYDGGSG-----KDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSL   56 (92)
T ss_dssp             BCSEEEEECTTCS-----SCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             EEEEEEEEcCCCC-----ceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCH
Confidence            4567765544333     379999999999999999 99999999999999998775

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=2e-12  Score=73.91  Aligned_cols=48  Identities=13%  Similarity=0.153  Sum_probs=43.1

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||++.|+         .++||..|.+++||+++| |++||+|++|||+++.++++
T Consensus        26 ~g~Gf~i~g~---------~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~   73 (111)
T d1vaea_          26 GDLGFTLRGN---------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTV   73 (111)
T ss_dssp             SCCSCCEESS---------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCH
T ss_pred             CccCEEEECC---------ccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCH
Confidence            3688988764         268999999999999999 99999999999999999887

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=8.2e-12  Score=72.88  Aligned_cols=49  Identities=27%  Similarity=0.301  Sum_probs=42.1

Q ss_pred             cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      .|||++..+        ..+++|.++.++|||+++|+|++||+|++|||+++.++++
T Consensus        39 GlG~~i~~~--------~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~   87 (126)
T d1wifa_          39 GLGLVVIQN--------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTL   87 (126)
T ss_dssp             CCCCCEEEE--------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCH
T ss_pred             cEEEEEEec--------CCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccH
Confidence            456666532        3479999999999999999999999999999999999886

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=4.4e-11  Score=65.42  Aligned_cols=52  Identities=17%  Similarity=0.277  Sum_probs=43.3

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~   61 (69)
                      .+||+.+....+      ..+++|.++.|+|||+++| |++||.|++|||+++.+...+
T Consensus         3 ~~LGv~~~~~~~------~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~~~~~   54 (88)
T d2z9ia1           3 ASLGVQVTNDKD------TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADAL   54 (88)
T ss_dssp             EECCEEEECCC-------CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCSHHHH
T ss_pred             CEEeEEEEecCC------CCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCcHHHH
Confidence            357887764333      3489999999999999999 999999999999999987663

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=9.1e-11  Score=64.23  Aligned_cols=42  Identities=29%  Similarity=0.431  Sum_probs=38.0

Q ss_pred             CCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        20 ~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ...+++|.+|.+++||+++| |++||.|++||++++++...+.
T Consensus        23 ~~~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~~~~~~   64 (88)
T d1ky9b2          23 KDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAELR   64 (88)
T ss_dssp             TTSCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECSSHHHHH
T ss_pred             CCCeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcCCHHHHH
Confidence            44589999999999999999 9999999999999999887643

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.4e-10  Score=61.62  Aligned_cols=43  Identities=23%  Similarity=0.425  Sum_probs=38.5

Q ss_pred             CCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccccc
Q psy12207         20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGY   63 (69)
Q Consensus        20 ~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~~   63 (69)
                      ...+++|..+.+++||+++| |++||.|++|||+++.+.+.+.+
T Consensus        29 ~~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s~~dl~~   71 (100)
T d1lcya1          29 VQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDVYE   71 (100)
T ss_dssp             CSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSHHHHHH
T ss_pred             CCCcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCCHHHHHH
Confidence            34589999999999999999 99999999999999998877543

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=5.4e-09  Score=57.83  Aligned_cols=47  Identities=19%  Similarity=0.092  Sum_probs=35.4

Q ss_pred             CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207          3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT   60 (69)
Q Consensus         3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~   60 (69)
                      ..|||+|.++.+.        .++...   .+++..+.|++||+|++|||+++.++++
T Consensus        21 ~glGf~i~g~~~~--------~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~   67 (96)
T d1ujva_          21 QGFGFTIADSPTG--------QRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSH   67 (96)
T ss_dssp             SSSSEEEEEETTE--------EEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCH
T ss_pred             CcccEEEEeeCCC--------ceEeec---cCcccccCCCCCCEEEEECCEECCCCCH
Confidence            4699999987653        333333   2345545699999999999999999987

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=5.7e-10  Score=61.56  Aligned_cols=41  Identities=20%  Similarity=0.460  Sum_probs=37.7

Q ss_pred             CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ..+++|..+.+++||+++| |++||.|+++|++++.+...+.
T Consensus        26 ~~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~~~l~   66 (94)
T d1ky9a1          26 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALR   66 (94)
T ss_dssp             CCSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSSHHHH
T ss_pred             CCCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCHHHHH
Confidence            4599999999999999999 9999999999999999987744

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.72  E-value=4.8e-09  Score=57.82  Aligned_cols=41  Identities=20%  Similarity=0.283  Sum_probs=35.9

Q ss_pred             CCCcEEEEEeCCC--------ChhhccCCC-CCCCEEEEECCEEcCCCccc
Q psy12207         20 GDNGIYVTKIMDG--------GAAQVDGRL-QVGDKLIAVRNSTVSKGPTL   61 (69)
Q Consensus        20 ~~~~i~I~~v~~~--------g~a~~~grl-~~gD~il~vng~~~~~~~~~   61 (69)
                      .+..+.|.++.++        |||+++| + ++||+|++|||+++.+...+
T Consensus        10 ~~~~~~I~~i~~G~~~~~~~~sPa~~aG-l~k~GD~I~~IdG~~v~~~~~~   59 (91)
T d1k32a1          10 DGDHYVVAKAYAGDYSNEGEKSPIFEYG-IDPTGYLIEDIDGETVGAGSNI   59 (91)
T ss_dssp             ETTEEEEEEECBSCTTSTTCBCGGGGGT-CCCTTCEEEEETTEECBTTBCH
T ss_pred             ECCeEEEEEEecCCCCCcccCChhHhcC-CCCCCCEEEEECCEeecCccee
Confidence            4558999999987        9999999 7 89999999999999887653

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.1e-09  Score=60.90  Aligned_cols=40  Identities=30%  Similarity=0.403  Sum_probs=36.7

Q ss_pred             CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      .+++|.++.+++||+++| |++||.|+++||+++.+...+.
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~~~l~   65 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISALETM   65 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCSHHHH
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECCEecccHHHHH
Confidence            489999999999999999 9999999999999999987743

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.63  E-value=2e-08  Score=56.09  Aligned_cols=40  Identities=18%  Similarity=0.225  Sum_probs=35.9

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccccc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYC   64 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~~~   64 (69)
                      +++|..|.+++||+. + |++||+|++|||+.+.+...+.+.
T Consensus         4 Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~~~~~l~~~   43 (103)
T d2hgaa1           4 GVQIDSVVPGSPASK-V-LTPGLVIESINGMPTSNLTTYSAA   43 (103)
T ss_dssp             CEEEEEECSSSGGGG-T-SCTTCEEEEETTEECSSHHHHHHH
T ss_pred             cEEEEEECCCChHHh-c-CCCCCEEEEECCEEcCCHHHHHHH
Confidence            899999999999986 5 999999999999999988875543

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.49  E-value=2.9e-08  Score=54.01  Aligned_cols=39  Identities=23%  Similarity=0.217  Sum_probs=36.2

Q ss_pred             cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207         23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG   62 (69)
Q Consensus        23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~   62 (69)
                      ++.|..+.++++|+++| |++||.|++|||+++.+...+.
T Consensus        20 G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~~~~~~~   58 (87)
T d2i6va1          20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMN   58 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCHHHHH
T ss_pred             EEEEecCCCCCHHHHCC-CCCCCEEEEECCEEeecHHHHH
Confidence            78999999999999999 9999999999999999887643