Psyllid ID: psy12216

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640------
MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDWEKYQTGLNKRDKYLLT
ccHHHHHHHcccHHHHHHHHHHccccccccccEEEEcccEEEcccccEEEHHHHHHHHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccccccHHHHHcccHHHHHHHHHcccHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHccccccccEEcEEEccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccc
cHHHHHHHHHccHHHHHHHHHHcccccccccEEEEEccHHEEcccccHEHHHHHHHHHHHHHHHHHHHHHHHcHHcccccEEHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHcccccHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHccccEEEEEEEEEEcccccEEEEcccEEEEEEEEEEccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEEEEEEccccEEEEEEccEEEEEEEccccccEEEEEEEEEEEEEEEEccHHHHHccccccHHHcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHccHHccHHHHHHHHHHHHHcHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
MKLTKAYQALTDEESRrnfekygnpdgpgamsfGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSeiierpsdeievpQLIRQipnlgeknrerplyhkySIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMwdfknpllqlpyvtddhlKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVlgnmpyvdlhvqpeviddeatteytAGAIITVTCTlmrkpmsvlfgddtikvqflepskegegeieeeekpngtitpvlpyvtddhlkhFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVlgnmpyvdlhvqpeviddeatteytagaiitpeviddeatteytAGAIITVTCTlmrkpmsvlfgddtikvqflepskegegeieeeekpngtitpvvnkekqqthrpvwmknkkggkkkkftknkhdkkssgqkkitntveqteapadvakvekkdtpeeskdvsseseeesdlsdvendevvdkkeknedsnnkseessdddddwEKYQTglnkrdkyllt
mkltkayqALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIierpsdeievpqlirqipnlgeknrerpLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLepskegegeieeeekpngtitpvLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAgaiitpeviddeatteYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLepskegegeieeeekpngtitpvvnkekqqthrpvwmknkkggkkkkftknkhdkkssgqkkitntveqteapadvakvekkdtpeeskdvsseseeesdlsdvendevvdkkeknedsnnkseessdddddwekyqtglnkrdkyllt
MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLepskegegeieeeekpNGTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLepskegegeieeeekpNGTITPVVNKEKQQTHRPVWMknkkggkkkkftknkhdkkSSGQKKITNTVEQTEAPADVAKVEKKDTPeeskdvsseseeesdlsdvendevvdkkeknedsnnkseessdddddWEKYQTGLNKRDKYLLT
******************************MSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIER***EIEVPQLIRQIPNLGE*NRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQM*****RSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFL******************TITPVLPYVTDDHLKHFICKKRYIKSLQQFAQM******SVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFL*****************************************************************************************************************************************************
MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRR*************EVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMS***G**TIKVQFLEPSKEGEG*IEEEEKPNGTITPVLPYVTDDHLKHFICKKRYIKSLQQFA******RRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMR*********************************************************************************************************************************************************QTG*NKRDKYL**
MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEP**************NGTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEP***************GTITPVVNKEKQQTHRPVWMKN***********************ITNTVEQTEAP************************************************************EKYQTGLNKRDKYLLT
MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLF*******QFL****************NGTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDD***************************************************************************************************************************************DDDDWEKYQTGLNKRDK**L*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDWEKYQTGLNKRDKYLLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query646 2.2.26 [Sep-21-2011]
Q5R660761 Translocation protein SEC yes N/A 0.566 0.480 0.447 5e-93
Q9UGP8760 Translocation protein SEC yes N/A 0.566 0.481 0.447 5e-93
Q8VHE0760 Translocation protein SEC yes N/A 0.552 0.469 0.453 2e-92
Q9HGN7611 Translocation protein sec yes N/A 0.427 0.451 0.298 5e-29
P14906663 Protein translocation pro yes N/A 0.386 0.377 0.248 2e-14
O756432136 U5 small nuclear ribonucl no N/A 0.297 0.089 0.273 4e-11
Q9VUV92142 Putative U5 small nuclear no N/A 0.371 0.112 0.249 2e-09
P326392163 Pre-mRNA-splicing helicas no N/A 0.291 0.086 0.231 2e-05
Q9U2G02145 Putative U5 small nuclear no N/A 0.304 0.091 0.252 5e-05
Q55CI82237 Activating signal cointeg no N/A 0.300 0.086 0.244 0.0002
>sp|Q5R660|SEC63_PONAB Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2 SV=1 Back     alignment and function desciption
 Score =  342 bits (877), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 166/371 (44%), Positives = 254/371 (68%), Gaps = 5/371 (1%)

Query: 1   MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMV 60
           M++ KAY ALTDEESR+N+E++GNPDGP A SFGIALP++IV+++NS+ VL +Y L FMV
Sbjct: 143 MRIAKAYAALTDEESRKNWEEFGNPDGPQATSFGIALPAWIVDQKNSILVLLVYGLAFMV 202

Query: 61  ALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNS 120
            LP  VG WWY+SIRY+GD++L+ T   Y  F   T +M +KR++M+L  + EFD ++N 
Sbjct: 203 ILPVVVGSWWYRSIRYSGDQILIRTTQIYTYFVYKTRNMDMKRLIMVLAGASEFDPQYNK 262

Query: 121 EIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEAD 180
           +   RP+D I +PQLIR+I ++  K  E PL   YS+KAR L+ +HL+ M++  ETLE D
Sbjct: 263 DATSRPTDNILIPQLIREIGSINLKKNEPPLTCPYSLKARVLLLSHLARMKI-PETLEED 321

Query: 181 RMYIVKKCPYLLQEMVTCISQLILLA--YAQRVPRLIHIETLENVMKLCPMIVQGMWDFK 238
           + +++KKCP LLQEMV  I QLI++A    +R  R   + +LEN MKL  M VQG+  FK
Sbjct: 322 QQFMLKKCPALLQEMVNVICQLIVMARNREEREFRAPTLASLENCMKLSQMAVQGLQQFK 381

Query: 239 NPLLQLPYVTDDHLKHFICKKRY-IKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297
           +PLLQLP++ +D+L+     K+Y IK++Q    +K  +R +++ F+ DE+Y +++ VLG+
Sbjct: 382 SPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLHFLEDEKYEEVMAVLGS 441

Query: 298 MPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLF-GDDTIKVQFLEPSKEGE 356
            PYV + ++ +V+DDE +   T G+++TV   L R+ M+ +F  + +I     +P+++G+
Sbjct: 442 FPYVTMDIKSQVLDDEDSNNITVGSLVTVLVKLTRQTMAEVFEKEQSICAAEEQPAEDGQ 501

Query: 357 GEIEEEEKPNG 367
           GE  +     G
Sbjct: 502 GETNKNRTKGG 512
Required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane.
Pongo abelii (taxid: 9601)
>sp|Q9UGP8|SEC63_HUMAN Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1 SV=2 Back     alignment and function description
>sp|Q8VHE0|SEC63_MOUSE Translocation protein SEC63 homolog OS=Mus musculus GN=Sec63 PE=1 SV=4 Back     alignment and function description
>sp|Q9HGN7|SEC63_SCHPO Translocation protein sec63 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec63 PE=1 SV=1 Back     alignment and function description
>sp|P14906|SEC63_YEAST Protein translocation protein SEC63 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC63 PE=1 SV=2 Back     alignment and function description
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 Back     alignment and function description
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4 Back     alignment and function description
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2 Back     alignment and function description
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1 Back     alignment and function description
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query646
242008885 753 conserved hypothetical protein [Pediculu 0.563 0.483 0.682 1e-152
332023800 760 Translocation protein SEC63-like protein 0.558 0.475 0.696 1e-150
322792367 761 hypothetical protein SINV_08840 [Solenop 0.503 0.427 0.693 1e-149
307180379 760 Translocation protein SEC63-like protein 0.569 0.484 0.681 1e-147
328705108664 PREDICTED: translocation protein SEC63 h 0.530 0.516 0.694 1e-147
193676498 808 PREDICTED: translocation protein SEC63 h 0.530 0.424 0.694 1e-146
383853678 755 PREDICTED: translocation protein SEC63 h 0.549 0.470 0.696 1e-144
307200284 757 Translocation protein SEC63-like protein 0.577 0.492 0.646 1e-143
345492311 770 PREDICTED: translocation protein SEC63 h 0.544 0.457 0.673 1e-142
350413543 757 PREDICTED: translocation protein SEC63 h 0.561 0.479 0.656 1e-139
>gi|242008885|ref|XP_002425227.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508955|gb|EEB12489.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 252/369 (68%), Positives = 315/369 (85%), Gaps = 5/369 (1%)

Query: 1   MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMV 60
           MKLTKAYQALTDEE++RNFEKYGNPDGPGAMSFGIALPS+IVEK+NSVWVLGLYALVFMV
Sbjct: 145 MKLTKAYQALTDEEAKRNFEKYGNPDGPGAMSFGIALPSWIVEKKNSVWVLGLYALVFMV 204

Query: 61  ALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNS 120
           ALPT VGMWWY SIRY+GD+VLL+T   YY  F  TP M LKRV+MILGASLEF++++N+
Sbjct: 205 ALPTVVGMWWYTSIRYSGDQVLLDTTQMYYYLFHKTPSMPLKRVIMILGASLEFEKKYNN 264

Query: 121 EIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEAD 180
           EI+ERP+D+IEVPQLIRQ   LGEKN+E+PL + YSIKARAL++AHLS M L   TL+ D
Sbjct: 265 EIVERPTDDIEVPQLIRQFTYLGEKNKEKPLCYPYSIKARALLHAHLSRMSLNPLTLDRD 324

Query: 181 RMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNP 240
           RMYIVKKCPYL+QEMV+C+SQLIL+AYA+R+  LI IET+ENVMKLCPMIVQG+W+FK+P
Sbjct: 325 RMYIVKKCPYLIQEMVSCVSQLILMAYAKRLKNLIFIETVENVMKLCPMIVQGLWEFKSP 384

Query: 241 LLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPY 300
           LLQLP++T+DHLK F  KKR IK++QQ AQ+K++ERR+++K ++DEQY D++KV+G MPY
Sbjct: 385 LLQLPHITEDHLKFFFSKKRSIKTIQQLAQLKSDERRNILKILSDEQYEDVMKVMGKMPY 444

Query: 301 VDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIE 360
           ++  V+ EVIDDEATT YTAGAI+TVT  L+R+ MS LFGDD++  + ++     E E +
Sbjct: 445 IECKVRCEVIDDEATTVYTAGAIVTVTVNLIRRDMSTLFGDDSLNEETID-----ETENK 499

Query: 361 EEEKPNGTI 369
           EE++P   +
Sbjct: 500 EEKEPQNVV 508

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332023800|gb|EGI64024.1| Translocation protein SEC63-like protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322792367|gb|EFZ16351.1| hypothetical protein SINV_08840 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307180379|gb|EFN68405.1| Translocation protein SEC63-like protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328705108|ref|XP_003242698.1| PREDICTED: translocation protein SEC63 homolog isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|193676498|ref|XP_001942990.1| PREDICTED: translocation protein SEC63 homolog isoform 1 [Acyrthosiphon pisum] gi|328705105|ref|XP_003242697.1| PREDICTED: translocation protein SEC63 homolog isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383853678|ref|XP_003702349.1| PREDICTED: translocation protein SEC63 homolog [Megachile rotundata] Back     alignment and taxonomy information
>gi|307200284|gb|EFN80552.1| Translocation protein SEC63-like protein [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|345492311|ref|XP_001600845.2| PREDICTED: translocation protein SEC63 homolog [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350413543|ref|XP_003490024.1| PREDICTED: translocation protein SEC63 homolog [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query646
FB|FBgn0035771753 sec63 "sec63" [Drosophila mela 0.526 0.451 0.653 2.7e-135
ZFIN|ZDB-GENE-040718-328751 sec63 "SEC63-like (S. cerevisi 0.523 0.450 0.483 1.2e-89
UNIPROTKB|E1C0C3759 SEC63 "Uncharacterized protein 0.523 0.445 0.467 4.9e-85
MGI|MGI:2155302760 Sec63 "SEC63-like (S. cerevisi 0.523 0.444 0.470 2.1e-84
RGD|1304984727 Sec63 "SEC63 homolog (S. cerev 0.523 0.464 0.467 3.4e-84
UNIPROTKB|F1RT28759 SEC63 "Uncharacterized protein 0.523 0.445 0.467 3.4e-84
UNIPROTKB|Q9UGP8760 SEC63 "Translocation protein S 0.523 0.444 0.467 7.2e-84
UNIPROTKB|E1B7B1760 SEC63 "Uncharacterized protein 0.523 0.444 0.464 9.1e-84
WB|WBGene00001047752 dnj-29 [Caenorhabditis elegans 0.503 0.432 0.450 1.6e-77
POMBASE|SPBC36B7.03611 sec63 "ER protein translocatio 0.171 0.181 0.433 1.6e-26
FB|FBgn0035771 sec63 "sec63" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1205 (429.2 bits), Expect = 2.7e-135, Sum P(3) = 2.7e-135
 Identities = 223/341 (65%), Positives = 281/341 (82%)

Query:     1 MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMV 60
             M L+KAYQALTD+ ++ N+EKYGNPDGPGAMSFGIALPS+IVEKENSVWVLGLY LVFMV
Sbjct:   145 MMLSKAYQALTDDVAKENYEKYGNPDGPGAMSFGIALPSWIVEKENSVWVLGLYGLVFMV 204

Query:    61 ALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNS 120
             A+P+AVG+WWY+SIR++GDKVLL+T   Y+ F   TPHM LKR LM+L ASLEFD+R NS
Sbjct:   205 AMPSAVGVWWYRSIRFSGDKVLLDTTQMYFYFIHKTPHMLLKRALMVLAASLEFDKRHNS 264

Query:   121 EIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEAD 180
             ++ ER SD  EVP LIRQ+PNL EK +E PL   YSIKARA+++AHLS M L  ETLE D
Sbjct:   265 QVQERQSDNDEVPALIRQLPNLNEKCKEHPLCRMYSIKARAILHAHLSRMPLNPETLERD 324

Query:   181 RMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNP 240
             R ++VKKCPYL+QEMV+C+ QL+++AYA+RVPRL  IET+EN MK+ PMI+QG+W+FK+P
Sbjct:   325 RQFVVKKCPYLVQEMVSCVHQLVMMAYARRVPRLPSIETIENCMKMSPMIIQGLWEFKSP 384

Query:   241 LLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPY 300
             LLQLP++T+DHL +F+ KKR++K+LQQFAQ+K EE R ++K ++D +Y + +KVLG MP 
Sbjct:   385 LLQLPHLTEDHL-YFMNKKRHVKNLQQFAQLKPEESRQLLKNLSDFEYENTMKVLGKMPL 443

Query:   301 VDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGD 341
             +D  ++ EVIDDE T   TAGAI+TVT TL RK M  LFGD
Sbjct:   444 IDFSIRCEVIDDENTNVVTAGAIVTVTVTLERKDMKTLFGD 484
GO:0005047 "signal recognition particle binding" evidence=ISS
GO:0005785 "signal recognition particle receptor complex" evidence=ISS
GO:0008565 "protein transporter activity" evidence=IEA
GO:0031204 "posttranslational protein targeting to membrane, translocation" evidence=IEA
GO:0045169 "fusome" evidence=IDA
ZFIN|ZDB-GENE-040718-328 sec63 "SEC63-like (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C0C3 SEC63 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2155302 Sec63 "SEC63-like (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1304984 Sec63 "SEC63 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RT28 SEC63 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UGP8 SEC63 "Translocation protein SEC63 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1B7B1 SEC63 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
WB|WBGene00001047 dnj-29 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
POMBASE|SPBC36B7.03 sec63 "ER protein translocation subcomplex subunit Sec63 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query646
smart00611312 smart00611, SEC63, Domain of unknown function in S 4e-50
pfam02889309 pfam02889, Sec63, Sec63 Brl domain 1e-37
COG5407610 COG5407, SEC63, Preprotein translocase subunit Sec 2e-21
smart00973314 smart00973, Sec63, Sec63 Brl domain 2e-17
smart00611312 smart00611, SEC63, Domain of unknown function in S 1e-06
pfam02889309 pfam02889, Sec63, Sec63 Brl domain 2e-06
pfam04931784 pfam04931, DNA_pol_phi, DNA polymerase phi 0.004
>gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information 
 Score =  176 bits (448), Expect = 4e-50
 Identities = 70/268 (26%), Positives = 118/268 (44%), Gaps = 32/268 (11%)

Query: 67  GMWWYKSIRYTGDKVLL-ETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIER 125
           G+W     R      +   TI  +     + P M  K +L IL  S EFD+         
Sbjct: 1   GIWPTDLGRIASYYYISYTTIRTF--NELLKPKMTTKDLLRILSMSSEFDQ--------- 49

Query: 126 PSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIV 185
                E   L+ ++        E P      +KA  L+ AHLS ++L S  LE+D +Y++
Sbjct: 50  IPVRHEEDLLLEELAEKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVL 109

Query: 186 KKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLP 245
           +    LLQ MV    +   L+ A             N + L  MI+Q +W   +PLLQLP
Sbjct: 110 QNAGRLLQAMVDIALERGWLSTA------------LNALNLSQMIIQALWPTDSPLLQLP 157

Query: 246 YVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHV 305
           ++ ++ LK    +K+ + SL+   ++++EER  ++  + D +   + KVL  +P +++ +
Sbjct: 158 HLPEEILKR--LEKKKVLSLEDLLELEDEERGELLG-LLDAEGERVYKVLSRLPKLNIEI 214

Query: 306 QPEVIDDEATTEYTAGAIITVTCTLMRK 333
             E I          G  +T+T  L   
Sbjct: 215 SLEPITRT-----VLGVEVTLTVDLTWD 237

Length = 312
>gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information
>gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 646
KOG4434|consensus 520 100.0
COG5407610 SEC63 Preprotein translocase subunit Sec63 [Intrac 100.0
PF02889314 Sec63: Sec63 Brl domain; InterPro: IPR004179 This 100.0
smart00611312 SEC63 Domain of unknown function in Sec63p, Brr2p 100.0
KOG0721|consensus230 99.97
KOG0951|consensus 1674 99.94
KOG0952|consensus 1230 99.76
PRK00254720 ski2-like helicase; Provisional 99.66
PRK02362737 ski2-like helicase; Provisional 99.65
PRK01172674 ski2-like helicase; Provisional 99.58
KOG4434|consensus520 99.36
PF02889314 Sec63: Sec63 Brl domain; InterPro: IPR004179 This 97.9
smart00611312 SEC63 Domain of unknown function in Sec63p, Brr2p 97.73
KOG0951|consensus 1674 96.31
COG1204766 Superfamily II helicase [General function predicti 94.27
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 91.06
COG5407610 SEC63 Preprotein translocase subunit Sec63 [Intrac 90.29
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 84.87
PRK14288369 chaperone protein DnaJ; Provisional 84.63
PRK14296372 chaperone protein DnaJ; Provisional 82.73
PRK14286372 chaperone protein DnaJ; Provisional 82.42
PRK14287371 chaperone protein DnaJ; Provisional 81.83
>KOG4434|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.3e-64  Score=516.04  Aligned_cols=249  Identities=51%  Similarity=0.854  Sum_probs=234.8

Q ss_pred             HHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHhCCCCCcCCCCCCCCcchhHHHHHHHHHHhc
Q psy12216         89 YYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLS  168 (646)
Q Consensus        89 F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~lp~~~~k~k~~~~~~~~~~Ka~lLLqAhLs  168 (646)
                      |+||++.+|+|.++++|.+||.|.||+..+|+++..|+.++.++.+|+++++.++.+.++.+...+++.|+++||+|||+
T Consensus         1 Y~YFi~kTp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLs   80 (520)
T KOG4434|consen    1 YYYFINRTPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLS   80 (520)
T ss_pred             CeeeeccCchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHh
Confidence            34678999999999999999999999999999999999999999999999999998888899999999999999999999


Q ss_pred             CCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCC
Q psy12216        169 NMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVT  248 (646)
Q Consensus       169 Ri~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~  248 (646)
                      |++|++.+|..|+.||+.+||||++.|++++.++..+||+|+-+++|++.+..|||.|++|++||+|.+.||||||||++
T Consensus        81 Rmpl~~dtLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHit  160 (520)
T KOG4434|consen   81 RMPLESDTLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHIT  160 (520)
T ss_pred             cCCCChhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccc
Confidence            99999989999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCceeEEeeeeecCCCCCcccCCCCeEEEEE
Q psy12216        249 DDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTC  328 (646)
Q Consensus       249 ~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~L~I~a~~~V~gEed~~~It~g~ivtL~V  328 (646)
                      ++.++++.                                                                        
T Consensus       161 ednL~~~~------------------------------------------------------------------------  168 (520)
T KOG4434|consen  161 EDNLQHLR------------------------------------------------------------------------  168 (520)
T ss_pred             hHHHHHHh------------------------------------------------------------------------
Confidence            88665540                                                                        


Q ss_pred             EEEEecCCCccCCccccccccccccCCCccccccCCCCceecCCCCCcCccceEEEeecccccccHHHHHhcChHHHhhh
Q psy12216        329 TLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSV  408 (646)
Q Consensus       329 kL~R~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~qlPh~~ee~~~~i~~~k~~i~~~~~l~~l~~eeRr~l  408 (646)
                                                                                ++++|+|||+|+.|..+.||+|
T Consensus       169 ----------------------------------------------------------KKr~vks~qdla~lk~e~rr~l  190 (520)
T KOG4434|consen  169 ----------------------------------------------------------KKRKVKSCQDLAVLKAETRRSL  190 (520)
T ss_pred             ----------------------------------------------------------hhcccccHHHHhhcCHHHHHHH
Confidence                                                                      1234678999999999999999


Q ss_pred             hccCChHhHHHHHHHhcCCCceEEEEEEEEccCCccccccccccccccccCCCCCcccccCceEEEEEEEEecCCccc
Q psy12216        409 VKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSVL  486 (646)
Q Consensus       409 L~~l~~~~~~dv~~v~~~~P~i~l~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~ivt~~v~l~r~~~~~~  486 (646)
                      |++|++++|++||.|||+||+|+|+++|.|+||                   ||+++||+||||||+|||+|++|.++
T Consensus       191 L~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dd-------------------ed~n~~TaG~vVTv~Vtl~R~~l~d~  249 (520)
T KOG4434|consen  191 LRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDD-------------------EDKNELTAGCVVTVKVTLRRSRLIDP  249 (520)
T ss_pred             HHhcchHHHHHHHHHHccCcceEEEeeEEEecC-------------------CcccceeeeeEEEEEEEEEeccccCh
Confidence            999999999999999999999999999998876                   89999999999999999999999986

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found Back     alignment and domain information
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information
>KOG0721|consensus Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>KOG0952|consensus Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG4434|consensus Back     alignment and domain information
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found Back     alignment and domain information
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query646
4f92_B1724 Brr2 Helicase Region S1087l Length = 1724 8e-13
4f91_B1724 Brr2 Helicase Region Length = 1724 9e-13
3im1_A328 Structure Of The C-Terminal Sec63 Unit Of Yeast Brr 2e-06
2q0z_X339 Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. 3e-06
3hib_A318 Crystal Structure Of The Second Sec63 Domain Of Yea 5e-05
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure 
Iteration: 1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 121  EIIERPSDEIEVP------QLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTS 174
            EII   ++   +P       L+RQ+          P ++   +K   L+ AHLS MQL++
Sbjct: 1446 EIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA 1505
Query: 175  ETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGM 234
            E L++D   I+ K   L+Q  V  +S    L+     P L         M+L  M+ Q M
Sbjct: 1506 E-LQSDTEEILSKAIRLIQACVDVLSSNGWLS-----PALA-------AMELAQMVTQAM 1552
Query: 235  WDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKV 294
            W   + L QLP+ T +H+K   C  + ++S+    +M++EER ++++ + D Q +D+ + 
Sbjct: 1553 WSKDSYLKQLPHFTSEHIKR--CTDKGVESVFDIMEMEDEERNALLQ-LTDSQIADVARF 1609
Query: 295  LGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRK 333
                P ++L    EV+D ++     +G  + V   L R+
Sbjct: 1610 CNRYPNIELSY--EVVDKDSI---RSGGPVVVLVQLERE 1643
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure
>pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2, P212121 Form Length = 328 Back     alignment and structure
>pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. Northeast Structural Genomics Target Hr1979 Length = 339 Back     alignment and structure
>pdb|3HIB|A Chain A, Crystal Structure Of The Second Sec63 Domain Of Yeast Brr2 Length = 318 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query646
3im1_A328 Protein SNU246, PRE-mRNA-splicing helicase BRR2; A 6e-29
2q0z_X339 Protein Pro2281; SEC63, SEC, NESG, HR1979, structu 1e-27
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 Back     alignment and structure
 Score =  116 bits (292), Expect = 6e-29
 Identities = 56/255 (21%), Positives = 107/255 (41%), Gaps = 32/255 (12%)

Query: 81  VLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIP 140
           V   TI  + +   ++    LK +L +L  ++EF+      +  R  D   + +L +++P
Sbjct: 23  VSFFTIQSFVS--SLSNTSTLKNMLYVLSTAVEFE-----SVPLRKGDRALLVKLSKRLP 75

Query: 141 NLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCIS 200
               +  E       S K   L+ A+ S ++L  +  + D   I++K   L+  +V  +S
Sbjct: 76  L---RFPEHTSSGSVSFKVFLLLQAYFSRLELPVD-FQNDLKDILEKVVPLINVVVDILS 131

Query: 201 QLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKR 260
               L                  M L  M++QG+WD  NPL Q+P+  +  L+   CK+ 
Sbjct: 132 ANGYL-------------NATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEK--CKEI 176

Query: 261 YIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTA 320
            ++++     +++EER  ++  + D Q + +   + N P V+L       D        +
Sbjct: 177 NVETVYDIMALEDEERDEILT-LTDSQLAQVAAFVNNYPNVELTYSLNNSDS-----LIS 230

Query: 321 GAIITVTCTLMRKPM 335
           G    +T  L R   
Sbjct: 231 GVKQKITIQLTRDVE 245
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query646
3im1_A328 Protein SNU246, PRE-mRNA-splicing helicase BRR2; A 100.0
2q0z_X339 Protein Pro2281; SEC63, SEC, NESG, HR1979, structu 100.0
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.95
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 99.77
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.77
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.69
3im1_A328 Protein SNU246, PRE-mRNA-splicing helicase BRR2; A 98.54
2q0z_X339 Protein Pro2281; SEC63, SEC, NESG, HR1979, structu 98.53
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 92.38
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 91.67
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 90.78
1wcn_A70 Transcription elongation protein NUSA; RNA-binding 90.49
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 90.12
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 90.03
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 89.71
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 89.35
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 89.26
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 89.06
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 87.47
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 86.8
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 85.98
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 84.8
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 84.22
2kz3_A83 Putative uncharacterized protein RAD51L3; RAD51D, 83.98
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 83.3
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 82.81
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 81.63
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 81.23
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Back     alignment and structure
Probab=100.00  E-value=2.5e-45  Score=389.94  Aligned_cols=265  Identities=20%  Similarity=0.295  Sum_probs=235.3

Q ss_pred             cccccchhhhhhhcccccccCcchHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHh
Q psy12216         59 MVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQ  138 (646)
Q Consensus        59 gvvLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~  138 (646)
                      +.+-|+-+|+..      +..||.+.||++|+  .+++++++..++|++||.|.||.     ++++|++|+.+|.+|.+.
T Consensus         7 ~~l~~t~lG~ia------S~yYi~~~T~~~f~--~~l~~~~~~~~lL~ils~a~Ef~-----~i~vR~~E~~~l~~L~~~   73 (328)
T 3im1_A            7 EIISTLSNGLIA------SHYGVSFFTIQSFV--SSLSNTSTLKNMLYVLSTAVEFE-----SVPLRKGDRALLVKLSKR   73 (328)
T ss_dssp             CCCTTSSSCBCC------CCCCCCHHHHHHHH--HHCCTTCCHHHHHHHHHTCGGGG-----GSCCCTTHHHHHHHHHTT
T ss_pred             CCccCCchhHHH------HHHCCCHHHHHHHH--HHhcccCCHHHHHHHhccHHHHH-----hcccCcchHHHHHHHHHh
Confidence            456799999986      34578888999997  56899999999999999999999     999999999999999999


Q ss_pred             CCCCCcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHH
Q psy12216        139 IPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIE  218 (646)
Q Consensus       139 lp~~~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~  218 (646)
                      +|.....   ....++++.|+++||||||+|+++|+ +|.+|+.+|+++|+||++||++||+..||            +.
T Consensus        74 ~~~~~~~---~~~~~~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~------------~~  137 (328)
T 3im1_A           74 LPLRFPE---HTSSGSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGY------------LN  137 (328)
T ss_dssp             SSSCCCT---TSCSSSHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTB------------TT
T ss_pred             CCCcccc---cCCCCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCc------------HH
Confidence            8874211   12345799999999999999999997 89999999999999999999999987654            67


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccC
Q psy12216        219 TLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM  298 (646)
Q Consensus       219 ~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~  298 (646)
                       ++++|+|+|||+||+|+.++||+|||||+.+.++++.  ++++.++++|+++++++++.++ ++++.+++++.++|++|
T Consensus       138 -~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~--~~~i~s~~~l~~~~~~e~~~ll-~~~~~~~~~v~~~~~~~  213 (328)
T 3im1_A          138 -ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCK--EINVETVYDIMALEDEERDEIL-TLTDSQLAQVAAFVNNY  213 (328)
T ss_dssp             -HHHHHHHHHHHHHTSCTTSCGGGGSTTCCHHHHHHHH--HTTCCSHHHHHHSCHHHHHHHC-CCCHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHhhcCCCCCceeCCCCCCHHHHHHHH--hCCCCCHHHHhcCCHHHHHhHh-CCCHHHHHHHHHHHHhC
Confidence             8999999999999999999999999999999999994  4679999999999999999988 58999999999999999


Q ss_pred             CceeEEeeeeecCCCCCcccCCCCeEEEEEEEEEecCCCccCCccccccccccccCCCccccccCCCCceecCCCCCcCc
Q psy12216        299 PYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVLPYVTD  378 (646)
Q Consensus       299 P~L~I~a~~~V~gEed~~~It~g~ivtL~VkL~R~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~qlPh~~e  378 (646)
                      |.|+|++  +|.|+   ..|++|+.++|+|+|+|.+..                           ..+.+|+|+|||.+.
T Consensus       214 P~l~v~~--~v~~~---~~i~~~~~~~l~v~l~~~~~~---------------------------~~~~~~ap~fp~~k~  261 (328)
T 3im1_A          214 PNVELTY--SLNNS---DSLISGVKQKITIQLTRDVEP---------------------------ENLQVTSEKYPFDKL  261 (328)
T ss_dssp             CCEEEEE--EETTG---GGCCTTSEEEEEEEEEESSCC---------------------------SCCBCCCSSCCBCCB
T ss_pred             CCEEEEE--EecCC---CcccCCCeEEEEEEEEECCCC---------------------------CCCcEECCCCCCCcc
Confidence            9999984  68775   579999999999999995421                           235799999999999


Q ss_pred             cceEEEeecc
Q psy12216        379 DHLKHFICKK  388 (646)
Q Consensus       379 e~~~~i~~~k  388 (646)
                      ++||.++++.
T Consensus       262 e~ww~~v~d~  271 (328)
T 3im1_A          262 ESWWLVLGEV  271 (328)
T ss_dssp             CCEEEEEEEG
T ss_pred             CCEEEEEEEC
Confidence            9999999864
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Back     alignment and structure
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens} Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 646
d2q0zx1176 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo 1e-31
d2q0zx1176 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo 1e-04
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure

class: All alpha proteins
fold: Sec63 N-terminal domain-like
superfamily: Sec63 N-terminal domain-like
family: Sec63 N-terminal domain
domain: Protein pro2281
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (298), Expect = 1e-31
 Identities = 51/199 (25%), Positives = 99/199 (49%), Gaps = 25/199 (12%)

Query: 101 LKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKAR 160
           ++ ++ I+  + E++      I  R  ++  + QL +++P+        P ++   +K  
Sbjct: 3   VRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKVPH----KLNNPKFNDPHVKTN 53

Query: 161 ALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETL 220
            L+ AHLS MQL++E L++D   I+ K   L+Q  V  +S    L+ A            
Sbjct: 54  LLLQAHLSRMQLSAE-LQSDTEEILSKAIRLIQACVDVLSSNGWLSPAL----------- 101

Query: 221 ENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVV 280
              M+L  M+ Q MW   + L QLP+ T +H+K   C  + ++S+    +M++EER +++
Sbjct: 102 -AAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKR--CTDKGVESVFDIMEMEDEERNALL 158

Query: 281 KFMNDEQYSDMLKVLGNMP 299
           + + D Q +D+ +     P
Sbjct: 159 Q-LTDSQIADVARFCNRYP 176
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query646
d2q0zx1176 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 100.0
d2q0zx2114 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 98.1
d2q0zx1176 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 97.04
d2p6ra2198 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 96.94
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 95.14
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 94.18
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 89.92
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 89.52
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 88.53
d2q0zx2114 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 84.93
d1szpa164 DNA repair protein Rad51, N-terminal domain {Baker 81.53
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Sec63 N-terminal domain-like
superfamily: Sec63 N-terminal domain-like
family: Sec63 N-terminal domain
domain: Protein pro2281
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=283.87  Aligned_cols=175  Identities=27%  Similarity=0.451  Sum_probs=160.4

Q ss_pred             CHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHhCCCCCcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHH
Q psy12216        100 ALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEA  179 (646)
Q Consensus       100 s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~lp~~~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~  179 (646)
                      .++.||++||.|.||+     ++++|++|+.++.+|.+.+|+...    .+..+.++.|+++||||||+|+++++ +|..
T Consensus         2 ~~k~lL~~ls~a~EF~-----~i~vR~~E~~~l~~l~~~~~~~~~----~~~~~~~~~K~~~Llqa~l~r~~l~~-sl~~   71 (176)
T d2q0zx1           2 KVRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKVPHKLN----NPKFNDPHVKTNLLLQAHLSRMQLSA-ELQS   71 (176)
T ss_dssp             CHHHHHHHHHTSGGGT-----TCCCCTTCHHHHHHHHHHSSSCCS----SCCTTCHHHHHHHHHHHHHTTCCCCH-HHHH
T ss_pred             cHHHHHHHHhCcHhhc-----cCCCCccHHHHHHHHHHhCCCCCc----ccccCCHHHHHHHHHHHHHcCCCCCH-HHHH
Confidence            5788999999999999     999999999999999999887431    23356889999999999999999974 8999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhc
Q psy12216        180 DRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKK  259 (646)
Q Consensus       180 D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k  259 (646)
                      |+.+|+++++||++||+|||...||            +.+++++|+|+|||+||+|++++||+|||||+++.++++.  +
T Consensus        72 D~~~I~~~~~Rll~al~ei~~~~~~------------~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~~~~~~~~kl~--~  137 (176)
T d2q0zx1          72 DTEEILSKAIRLIQACVDVLSSNGW------------LSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCT--D  137 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTB------------HHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHH--H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHhcCCCCCCccCCCcCCHHHHHHHH--H
Confidence            9999999999999999999987554            7889999999999999999999999999999999999994  4


Q ss_pred             cCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCC
Q psy12216        260 RYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP  299 (646)
Q Consensus       260 ~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P  299 (646)
                      .++.++++|.++++++++.+++ +++.++.+|.++|+.||
T Consensus       138 ~~i~sl~~l~~~~~~e~~~ll~-~~~~~~~~i~~~~~~~P  176 (176)
T d2q0zx1         138 KGVESVFDIMEMEDEERNALLQ-LTDSQIADVARFCNRYP  176 (176)
T ss_dssp             TTCCSHHHHHHSCHHHHHHHHC-CCHHHHHHHHHHHTTSC
T ss_pred             CCCCCHHHHHhCCHHHHHHHHc-CCHHHHHHHHHHHHhCc
Confidence            5789999999999999999985 89999999999999999
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure