Psyllid ID: psy12244
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | 2.2.26 [Sep-21-2011] | |||||||
| Q0IFX5 | 656 | Translation factor GUF1 h | N/A | N/A | 0.591 | 0.231 | 0.585 | 1e-49 | |
| B0WXB8 | 647 | Translation factor GUF1 h | N/A | N/A | 0.568 | 0.225 | 0.582 | 4e-49 | |
| Q9VRH6 | 696 | Translation factor waclaw | yes | N/A | 0.536 | 0.198 | 0.562 | 8e-44 | |
| Q8C3X4 | 651 | Translation factor Guf1, | yes | N/A | 0.548 | 0.216 | 0.542 | 2e-43 | |
| Q8N442 | 669 | Translation factor GUF1, | yes | N/A | 0.525 | 0.201 | 0.548 | 6e-43 | |
| B3RXR7 | 660 | Translation factor GUF1 h | N/A | N/A | 0.575 | 0.224 | 0.505 | 2e-42 | |
| A6QLJ3 | 669 | Translation factor GUF1, | yes | N/A | 0.525 | 0.201 | 0.542 | 4e-42 | |
| A9S3D3 | 684 | Translation factor GUF1 h | N/A | N/A | 0.521 | 0.195 | 0.560 | 4e-40 | |
| Q9FLE4 | 663 | Translation factor GUF1 h | yes | N/A | 0.533 | 0.206 | 0.502 | 3e-39 | |
| C5Z3W1 | 665 | Translation factor GUF1 h | N/A | N/A | 0.521 | 0.201 | 0.524 | 5e-39 |
| >sp|Q0IFX5|GUF1_AEDAE Translation factor GUF1 homolog, mitochondrial OS=Aedes aegypti GN=AAEL003926 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/181 (58%), Positives = 124/181 (68%), Gaps = 29/181 (16%)
Query: 14 DSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQE 72
D T ++ IP+ RIRNFSIIAHVDHGKSTLADRLLE+TGT+ +G+ QVLDSLQVE+E
Sbjct: 43 DDDDTRFDQIPVQRIRNFSIIAHVDHGKSTLADRLLELTGTIAKKAGNKQVLDSLQVEKE 102
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-- 130
RGITVKAQTASL Y +GE YLLNLIDTPGHVDFSNEV+RSLAAC GV+LL+DAN+
Sbjct: 103 RGITVKAQTASLVYP--YEGETYLLNLIDTPGHVDFSNEVSRSLAACDGVILLVDANEGV 160
Query: 131 ------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFS 166
+DLKNA P+A ++L TLF ID VLRI +
Sbjct: 161 QAQTVANFHLARAKQLVIVPVLNKIDLKNARPDAVAQELFTLFEIDPDEVLRISAKIGTG 220
Query: 167 C 167
C
Sbjct: 221 C 221
|
Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Aedes aegypti (taxid: 7159) EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: - |
| >sp|B0WXB8|GUF1_CULQU Translation factor GUF1 homolog, mitochondrial OS=Culex quinquefasciatus GN=CPIJ012086 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 125/175 (71%), Gaps = 29/175 (16%)
Query: 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS-QVLDSLQVEQERGITVK 78
Y++IP++RIRNFSIIAHVDHGKSTLADRLLE+TGT+ + ++ QVLDSLQVE+ERGITVK
Sbjct: 40 YDEIPVSRIRNFSIIAHVDHGKSTLADRLLELTGTIKKNATNKQVLDSLQVEKERGITVK 99
Query: 79 AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------- 130
AQTASL Y +G +YLLNLIDTPGHVDF+NEV+RSLAAC GV+LL+DAN+
Sbjct: 100 AQTASLLYR--YEGSDYLLNLIDTPGHVDFANEVSRSLAACDGVILLVDANEGVQAQTVA 157
Query: 131 ------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSC 167
+DLKNA P+A ++L TLF ID VLRI ++ C
Sbjct: 158 NYHLARGKELVIVPVLNKIDLKNARPDAVTQELFTLFGIDPDGVLRISAKQGTGC 212
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Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Culex quinquefasciatus (taxid: 7176) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|Q9VRH6|GUF1_DROME Translation factor waclaw, mitochondrial OS=Drosophila melanogaster GN=waw PE=3 SV=2 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 115/167 (68%), Gaps = 29/167 (17%)
Query: 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS-QVLDSLQVEQERGITVK 78
+ +P+ RIRNFSIIAHVDHGKSTLADRLLE+TG + +G QVLD+LQVE+ERGITVK
Sbjct: 91 FAHMPVERIRNFSIIAHVDHGKSTLADRLLELTGAIARNGGQHQVLDNLQVERERGITVK 150
Query: 79 AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA---------- 128
AQTAS+ + G+ YLLNLIDTPGHVDFSNEV+RSLAAC GVVLL+DA
Sbjct: 151 AQTASIFHRH--KGQLYLLNLIDTPGHVDFSNEVSRSLAACDGVVLLVDACHGVQAQTVA 208
Query: 129 ----------------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
N++D+K+ANP+ + L+ LF ID VLR+
Sbjct: 209 NYHLAKQRQLAVVPVLNKIDIKHANPDQVCQDLKLLFGIDPDEVLRV 255
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Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|Q8C3X4|GUF1_MOUSE Translation factor Guf1, mitochondrial OS=Mus musculus GN=Guf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/175 (54%), Positives = 119/175 (68%), Gaps = 34/175 (19%)
Query: 12 KPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVE 70
KPD P EDI RNFSIIAHVDHGKSTLADRLLE+TGT+ + + QVLD LQVE
Sbjct: 39 KPDMSRFPVEDI-----RNFSIIAHVDHGKSTLADRLLELTGTIDKTKKNKQVLDKLQVE 93
Query: 71 QERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ERGITVKAQTASL Y+ G++YLLNLIDTPGHVDFS EV+RSL+ACQGV+L++DAN+
Sbjct: 94 RERGITVKAQTASLFYS--FGGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANE 151
Query: 131 --------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159
+DLKNA+PE +Q++ +F+I + ++I
Sbjct: 152 GIQAQTVANFFLAFEAQLSVIPVINKIDLKNADPERVGKQIEKVFDIPSEECIKI 206
|
Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|Q8N442|GUF1_HUMAN Translation factor GUF1, mitochondrial OS=Homo sapiens GN=GUF1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 90/164 (54%), Positives = 114/164 (69%), Gaps = 29/164 (17%)
Query: 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVEQERGITVKAQT 81
P+ IRNFSI+AHVDHGKSTLADRLLE+TGT+ + + QVLD LQVE+ERGITVKAQT
Sbjct: 63 FPVENIRNFSIVAHVDHGKSTLADRLLELTGTIDKTKNNKQVLDKLQVERERGITVKAQT 122
Query: 82 ASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------- 130
ASL Y +G++YLLNLIDTPGHVDFS EV+RSL+ACQGV+L++DAN+
Sbjct: 123 ASLFYNC--EGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQTVANFF 180
Query: 131 ---------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159
+DLKNA+PE E Q++ +F+I ++I
Sbjct: 181 LAFEAQLSVIPVINKIDLKNADPERVENQIEKVFDIPSDECIKI 224
|
Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|B3RXR7|GUF1_TRIAD Translation factor GUF1 homolog, mitochondrial OS=Trichoplax adhaerens GN=TRIADDRAFT_56304 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 121/180 (67%), Gaps = 32/180 (17%)
Query: 7 STEAAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-SSQVLD 65
+++AA+P T + P+ +IRNFSIIAH+DHGKSTLADRLLE+ G + S + QVLD
Sbjct: 46 TSKAAEP---ITALSEFPVEKIRNFSIIAHIDHGKSTLADRLLEIAGVIPKSAENKQVLD 102
Query: 66 SLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLL 125
LQVE+ERGITVKAQTAS+ Y GE YLLNLIDTPGHVDF+ EV+RSLAACQGV+L+
Sbjct: 103 KLQVERERGITVKAQTASMLYE--YHGETYLLNLIDTPGHVDFNYEVSRSLAACQGVLLV 160
Query: 126 IDA--------------------------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
+DA N++D+K+ANP+ QLQ +F+I+ + +++
Sbjct: 161 VDASQGVQAQTVANFFLAFEADLKIIPVLNKIDMKSANPDRIANQLQRVFDIEPEETMKV 220
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Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Trichoplax adhaerens (taxid: 10228) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|A6QLJ3|GUF1_BOVIN Translation factor GUF1, mitochondrial OS=Bos taurus GN=GUF1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/164 (54%), Positives = 113/164 (68%), Gaps = 29/164 (17%)
Query: 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVEQERGITVKAQT 81
P+ RNFSIIAHVDHGKSTLADRLLE+TG + + + QVLD LQVE+ERGITVKAQT
Sbjct: 63 FPVENTRNFSIIAHVDHGKSTLADRLLELTGAIDKTKNNKQVLDKLQVERERGITVKAQT 122
Query: 82 ASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------- 130
ASL Y +G++YLLNLIDTPGHVDFS EV+RSL+ACQGV+L++DAN+
Sbjct: 123 ASLFYN--YEGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQTVANFF 180
Query: 131 ---------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159
+DLKNA+PE E+Q++ +F+I ++I
Sbjct: 181 LAFEAQLSIIPVINKIDLKNADPERVEKQIEKVFDIPGDECIKI 224
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Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|A9S3D3|GUF1_PHYPA Translation factor GUF1 homolog, mitochondrial OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_180825 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 110/166 (66%), Gaps = 32/166 (19%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTA 82
P IRNFSIIAHVDHGKSTLADRLLE+TGT+ G Q LD LQVE+ERGITVKAQTA
Sbjct: 80 PPHLIRNFSIIAHVDHGKSTLADRLLELTGTIRKGHGQPQFLDKLQVERERGITVKAQTA 139
Query: 83 SL--RYTSILDG---EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA--------- 128
++ Y S G E +LLNLIDTPGHVDFS EV+RSLAACQGV+LL+DA
Sbjct: 140 TMFYNYRSKKTGGANERFLLNLIDTPGHVDFSYEVSRSLAACQGVLLLVDAAQGVQAQTV 199
Query: 129 -----------------NQVDLKNANPEACEEQLQTLFNIDKKSVL 157
N++D NA+PE + QL+ +F+ID +SVL
Sbjct: 200 ANFYLAFESDLAIIPVINKIDQINADPEGVKSQLKQIFDIDPESVL 245
|
Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Physcomitrella patens subsp. patens (taxid: 145481) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|Q9FLE4|GUF1_ARATH Translation factor GUF1 homolog, mitochondrial OS=Arabidopsis thaliana GN=At5g39900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 112/167 (67%), Gaps = 30/167 (17%)
Query: 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQT 81
P +IRNFSIIAH+DHGKSTLADRL+E+TGT+ G Q LD LQVE+ERGITVKAQT
Sbjct: 61 FPSEKIRNFSIIAHIDHGKSTLADRLMELTGTIKKGHGQPQYLDKLQVERERGITVKAQT 120
Query: 82 ASLRYTSILDGEE---YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA---------- 128
A++ Y + ++ +E YLLNLIDTPGHVDFS EV+RSL+ACQG +L++DA
Sbjct: 121 ATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQGVQAQTVA 180
Query: 129 ----------------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
N++D A+PE + QL+++F++D + VL +
Sbjct: 181 NFYLAFEANLTIVPVINKIDQPTADPERVKAQLKSMFDLDTEDVLLV 227
|
Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|C5Z3W1|GUF1_SORBI Translation factor GUF1 homolog, mitochondrial OS=Sorghum bicolor GN=Sb10g003070 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 107/166 (64%), Gaps = 32/166 (19%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTA 82
P R+RNFSIIAHVDHGKSTLADRLLE+TGT+ G Q LD LQVE+ERGITVKAQTA
Sbjct: 59 PPERVRNFSIIAHVDHGKSTLADRLLELTGTIQKGHGQPQYLDKLQVERERGITVKAQTA 118
Query: 83 SLRYTSIL-----DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA--------- 128
++ Y + D +YLLNLIDTPGHVDFS EV+RSLAACQG +L++DA
Sbjct: 119 TMFYRHVSASQDSDTPKYLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTI 178
Query: 129 -----------------NQVDLKNANPEACEEQLQTLFNIDKKSVL 157
N++D A+P+ ++QL+ LF+ID L
Sbjct: 179 ANFYLAFESNLSIIPVINKIDQPTADPDNVKDQLKRLFDIDPSEAL 224
|
Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. Sorghum bicolor (taxid: 4558) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | ||||||
| 193711485 | 658 | PREDICTED: translation factor GUF1 homol | 0.603 | 0.235 | 0.587 | 8e-50 | |
| 158298976 | 657 | AGAP009971-PA [Anopheles gambiae str. PE | 0.618 | 0.242 | 0.578 | 7e-49 | |
| 157103617 | 656 | GTP-binding protein lepa [Aedes aegypti] | 0.591 | 0.231 | 0.585 | 6e-48 | |
| 170052039 | 647 | small GTP-binding protein [Culex quinque | 0.568 | 0.225 | 0.582 | 2e-47 | |
| 383849352 | 626 | PREDICTED: translation factor GUF1 homol | 0.568 | 0.233 | 0.558 | 7e-47 | |
| 312375081 | 1160 | hypothetical protein AND_15085 [Anophele | 0.595 | 0.131 | 0.556 | 2e-46 | |
| 91081361 | 644 | PREDICTED: similar to small GTP-binding | 0.536 | 0.214 | 0.592 | 1e-45 | |
| 332024626 | 649 | GTP-binding protein GUF1-like protein [A | 0.587 | 0.232 | 0.543 | 8e-45 | |
| 307182785 | 602 | GTP-binding protein GUF1-like protein [C | 0.529 | 0.225 | 0.579 | 3e-44 | |
| 156549409 | 649 | PREDICTED: translation factor GUF1 homol | 0.521 | 0.206 | 0.574 | 4e-44 |
| >gi|193711485|ref|XP_001951514.1| PREDICTED: translation factor GUF1 homolog, mitochondrial-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 107/182 (58%), Positives = 128/182 (70%), Gaps = 27/182 (14%)
Query: 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVEQERGITVK 78
Y++IP IRNFSIIAHVDHGKSTLADRLLE+T T+ + G +QVLD LQVE+ERGITVK
Sbjct: 48 YQNIPSENIRNFSIIAHVDHGKSTLADRLLELTNTICIEEGKAQVLDRLQVEKERGITVK 107
Query: 79 AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------- 130
AQTASL Y S +D + YLLNLIDTPGHVDFSNEV+RSL+ACQGV+LL+DANQ
Sbjct: 108 AQTASLFYKSRVDDQLYLLNLIDTPGHVDFSNEVSRSLSACQGVILLVDANQGVQAQTVA 167
Query: 131 ------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHR 172
VDLKNANPE EEQL+ LF+I+ ++VLRI ++ D
Sbjct: 168 NFYLAFCQNLIIVPVLNKVDLKNANPEKVEEQLRVLFDIEPETVLRISAKQGTGVEDLLE 227
Query: 173 SL 174
S+
Sbjct: 228 SI 229
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158298976|ref|XP_319107.3| AGAP009971-PA [Anopheles gambiae str. PEST] gi|157014146|gb|EAA13916.4| AGAP009971-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 130/190 (68%), Gaps = 31/190 (16%)
Query: 5 FYSTEAAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQV 63
F++T A + D Y++IP++RIRNFSIIAHVDHGKSTLADRLLEMTGT+ SG+ QV
Sbjct: 37 FHTTTARQSDD--IEYDEIPVSRIRNFSIIAHVDHGKSTLADRLLEMTGTIAKHSGNKQV 94
Query: 64 LDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVV 123
LDSLQVE+ERGITVKAQTASL Y G+ YLLNLIDTPGHVDFSNEV+RSLAAC GV+
Sbjct: 95 LDSLQVEKERGITVKAQTASLIYQHA--GQPYLLNLIDTPGHVDFSNEVSRSLAACNGVI 152
Query: 124 LLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157
LL+DANQ +DLKNA PEA +L TLF+ID VL
Sbjct: 153 LLVDANQGVQAQTVANYHLARSKQLVIVPVLNKIDLKNARPEAVCNELLTLFDIDPDDVL 212
Query: 158 RIWHRRCFSC 167
++ + C
Sbjct: 213 KVSAKVGTGC 222
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157103617|ref|XP_001648056.1| GTP-binding protein lepa [Aedes aegypti] gi|122091806|sp|Q0IFX5.1|GUF1_AEDAE RecName: Full=Translation factor GUF1 homolog, mitochondrial; AltName: Full=Elongation factor 4 homolog; Short=EF-4; AltName: Full=GTPase GUF1 homolog; AltName: Full=Ribosomal back-translocase; Flags: Precursor gi|108880500|gb|EAT44725.1| AAEL003926-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 106/181 (58%), Positives = 124/181 (68%), Gaps = 29/181 (16%)
Query: 14 DSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQE 72
D T ++ IP+ RIRNFSIIAHVDHGKSTLADRLLE+TGT+ +G+ QVLDSLQVE+E
Sbjct: 43 DDDDTRFDQIPVQRIRNFSIIAHVDHGKSTLADRLLELTGTIAKKAGNKQVLDSLQVEKE 102
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-- 130
RGITVKAQTASL Y +GE YLLNLIDTPGHVDFSNEV+RSLAAC GV+LL+DAN+
Sbjct: 103 RGITVKAQTASLVYP--YEGETYLLNLIDTPGHVDFSNEVSRSLAACDGVILLVDANEGV 160
Query: 131 ------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFS 166
+DLKNA P+A ++L TLF ID VLRI +
Sbjct: 161 QAQTVANFHLARAKQLVIVPVLNKIDLKNARPDAVAQELFTLFEIDPDEVLRISAKIGTG 220
Query: 167 C 167
C
Sbjct: 221 C 221
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170052039|ref|XP_001862040.1| small GTP-binding protein [Culex quinquefasciatus] gi|317411677|sp|B0WXB8.1|GUF1_CULQU RecName: Full=Translation factor GUF1 homolog, mitochondrial; AltName: Full=Elongation factor 4 homolog; Short=EF-4; AltName: Full=GTPase GUF1 homolog; AltName: Full=Ribosomal back-translocase; Flags: Precursor gi|167872996|gb|EDS36379.1| small GTP-binding protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 125/175 (71%), Gaps = 29/175 (16%)
Query: 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS-QVLDSLQVEQERGITVK 78
Y++IP++RIRNFSIIAHVDHGKSTLADRLLE+TGT+ + ++ QVLDSLQVE+ERGITVK
Sbjct: 40 YDEIPVSRIRNFSIIAHVDHGKSTLADRLLELTGTIKKNATNKQVLDSLQVEKERGITVK 99
Query: 79 AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------- 130
AQTASL Y +G +YLLNLIDTPGHVDF+NEV+RSLAAC GV+LL+DAN+
Sbjct: 100 AQTASLLYR--YEGSDYLLNLIDTPGHVDFANEVSRSLAACDGVILLVDANEGVQAQTVA 157
Query: 131 ------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSC 167
+DLKNA P+A ++L TLF ID VLRI ++ C
Sbjct: 158 NYHLARGKELVIVPVLNKIDLKNARPDAVTQELFTLFGIDPDGVLRISAKQGTGC 212
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383849352|ref|XP_003700309.1| PREDICTED: translation factor GUF1 homolog, mitochondrial-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/181 (55%), Positives = 123/181 (67%), Gaps = 35/181 (19%)
Query: 5 FYSTEAAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVL 64
+Y+T+ K E+IP+ IRNFSIIAHVDHGKSTLADRLLE+TG + ++ Q+L
Sbjct: 14 YYTTKVDKE-------EEIPVENIRNFSIIAHVDHGKSTLADRLLELTGAIKTNSGKQIL 66
Query: 65 DSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVL 124
D LQVE+ERGITVKAQTASL YT +G +YLLNLIDTPGHVDFS EV RSLA CQGV+L
Sbjct: 67 DKLQVEKERGITVKAQTASLNYT--YNGIKYLLNLIDTPGHVDFSAEVHRSLAPCQGVIL 124
Query: 125 LIDA--------------------------NQVDLKNANPEACEEQLQTLFNIDKKSVLR 158
+IDA N++DLKNANPE +QL+ LFNI+K V++
Sbjct: 125 VIDANDGVQAQTVANFHLAVKQNLVMIPVINKIDLKNANPEKVMDQLKMLFNIEKSEVMK 184
Query: 159 I 159
I
Sbjct: 185 I 185
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312375081|gb|EFR22517.1| hypothetical protein AND_15085 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 126/187 (67%), Gaps = 34/187 (18%)
Query: 11 AKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQV 69
+K ++ Y+ IP+ RIRNFSIIAHVDHGKSTLADRLLE+TGT+ + G+ QVLDSLQV
Sbjct: 565 SKTRNQDIEYDQIPVDRIRNFSIIAHVDHGKSTLADRLLEITGTIAKNVGNRQVLDSLQV 624
Query: 70 EQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
E+ERGITVKAQTA +GE+YLLNLIDTPGHVDFSNEV+RSLAAC GV+LL+DAN
Sbjct: 625 EKERGITVKAQTAH-------EGEQYLLNLIDTPGHVDFSNEVSRSLAACNGVILLVDAN 677
Query: 130 Q--------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWHRR 163
Q +DLKNA PEA +L TLF+ID VLR+ +
Sbjct: 678 QGVQAQTVANYHLARAKQLTIVPVLNKIDLKNARPEAVCNELLTLFDIDPDEVLRVSAKL 737
Query: 164 CFSCADC 170
C++
Sbjct: 738 GTGCSEV 744
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91081361|ref|XP_971457.1| PREDICTED: similar to small GTP-binding protein [Tribolium castaneum] gi|270005187|gb|EFA01635.1| hypothetical protein TcasGA2_TC007205 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/167 (59%), Positives = 119/167 (71%), Gaps = 29/167 (17%)
Query: 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVL-SSGSSQVLDSLQVEQERGITVK 78
Y IPI RIRNFSIIAHVDHGKSTLADRLLE TG + +SG +QVLD LQVE+ERGITVK
Sbjct: 40 YTQIPIERIRNFSIIAHVDHGKSTLADRLLEFTGAITKNSGQNQVLDKLQVERERGITVK 99
Query: 79 AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA---------- 128
AQ+ SL Y G EYLLNLIDTPGHVDFS+EV+RSL+ACQGV+L++DA
Sbjct: 100 AQSVSLLYN--YKGNEYLLNLIDTPGHVDFSSEVSRSLSACQGVILVVDANDGVQAQTVA 157
Query: 129 ----------------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
N++DLKNA+P+ +QLQ+LF+I+ + VLRI
Sbjct: 158 NFYLAFGKDLTIVPVLNKIDLKNADPDRVTKQLQSLFDIEPQEVLRI 204
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332024626|gb|EGI64823.1| GTP-binding protein GUF1-like protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/186 (54%), Positives = 126/186 (67%), Gaps = 35/186 (18%)
Query: 1 SSVYFYSTEAAKPDSKATPYE-DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG 59
SS ++ST+A T E ++P+ IRNFSI+AHVDHGKSTLADRLLE+TG + ++
Sbjct: 32 SSSRYFSTQAT------TDVEYNVPVEAIRNFSIVAHVDHGKSTLADRLLELTGAIKANS 85
Query: 60 SSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAAC 119
Q+LD+LQVE+ERGITVKAQTASL Y+ G++YLLNLIDTPGHVDFS EV RSLA C
Sbjct: 86 GKQILDNLQVEKERGITVKAQTASLFYS--YQGKKYLLNLIDTPGHVDFSAEVHRSLAPC 143
Query: 120 QGVVLLIDA--------------------------NQVDLKNANPEACEEQLQTLFNIDK 153
QGV+LL+DA N+VDLKNANPE +EQLQ L ++D
Sbjct: 144 QGVILLVDANDGVQAQTVANYYLAREKNLVIIPVINKVDLKNANPEKVKEQLQMLLDVDH 203
Query: 154 KSVLRI 159
V++I
Sbjct: 204 IDVIKI 209
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307182785|gb|EFN69903.1| GTP-binding protein GUF1-like protein [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 115/164 (70%), Gaps = 28/164 (17%)
Query: 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQT 81
++PI IRNFSI+AHVDHGKSTLADRLLE+TG + ++ QVLD+LQVE+ERGITVKAQT
Sbjct: 1 NVPIETIRNFSIVAHVDHGKSTLADRLLELTGAIKTNSGKQVLDNLQVEKERGITVKAQT 60
Query: 82 ASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA------------- 128
ASL Y+ G+ YLLNLIDTPGHVDFS EV RSL CQGV+LL+DA
Sbjct: 61 ASLFYSH--RGKNYLLNLIDTPGHVDFSAEVHRSLTPCQGVILLVDANDGVQAQTVANYY 118
Query: 129 -------------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
N+VDLKNANPE ++QLQ LF+I+ V++I
Sbjct: 119 LAREKDLVIIPVINKVDLKNANPEKVKDQLQMLFDIEDIDVIKI 162
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156549409|ref|XP_001602625.1| PREDICTED: translation factor GUF1 homolog, mitochondrial-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 116/162 (71%), Gaps = 28/162 (17%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTAS 83
P+ IRNFSIIAHVDHGKSTLADRLLEMTG + ++ QVLD LQVE+ERGITVKAQT S
Sbjct: 49 PVENIRNFSIIAHVDHGKSTLADRLLEMTGAIKTNSGMQVLDKLQVEKERGITVKAQTCS 108
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA--------------- 128
L+YT L+ +EYLLNLIDTPGHVDF++EV RSLAACQGV+LL+DA
Sbjct: 109 LKYT--LEDKEYLLNLIDTPGHVDFASEVHRSLAACQGVILLVDANDGVQAQTVANFYLA 166
Query: 129 -----------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
N++DLKNANP+ +QL LF+++ + +++I
Sbjct: 167 FGKDLTIIPVINKIDLKNANPDRVVKQLNNLFDMEDEEIIKI 208
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 257 | ||||||
| ZFIN|ZDB-GENE-030131-4289 | 672 | guf1 "GUF1 GTPase homolog (S. | 0.408 | 0.156 | 0.740 | 1.8e-43 | |
| RGD|1310774 | 563 | Guf1 "GUF1 GTPase homolog (S. | 0.435 | 0.198 | 0.7 | 8.5e-43 | |
| UNIPROTKB|F1NX94 | 303 | GUF1 "Uncharacterized protein" | 0.463 | 0.392 | 0.656 | 2.8e-42 | |
| MGI|MGI:2140726 | 651 | Guf1 "GUF1 GTPase homolog (S. | 0.435 | 0.172 | 0.7 | 9.4e-42 | |
| UNIPROTKB|D4A6V2 | 651 | Guf1 "Translation factor GUF1, | 0.435 | 0.172 | 0.7 | 9.4e-42 | |
| UNIPROTKB|Q8N442 | 669 | GUF1 "Translation factor GUF1, | 0.408 | 0.156 | 0.722 | 1.1e-41 | |
| UNIPROTKB|F1NX95 | 661 | GUF1 "Uncharacterized protein" | 0.463 | 0.180 | 0.656 | 5.1e-41 | |
| UNIPROTKB|F1S3T1 | 614 | GUF1 "Uncharacterized protein" | 0.408 | 0.171 | 0.703 | 1e-40 | |
| UNIPROTKB|F1PF69 | 610 | GUF1 "Translation factor GUF1, | 0.404 | 0.170 | 0.710 | 1e-40 | |
| UNIPROTKB|A6QLJ3 | 669 | GUF1 "Translation factor GUF1, | 0.408 | 0.156 | 0.712 | 1.4e-40 |
| ZFIN|ZDB-GENE-030131-4289 guf1 "GUF1 GTPase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 1.8e-43, Sum P(2) = 1.8e-43
Identities = 80/108 (74%), Positives = 92/108 (85%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS-QVLDSLQVEQERGITVKAQTA 82
P RIRNFSIIAH+DHGKSTLADRLLEMTG + + S+ QVLD LQVE+ERGITVKAQTA
Sbjct: 70 PAERIRNFSIIAHIDHGKSTLADRLLEMTGAIAKTASNKQVLDKLQVERERGITVKAQTA 129
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
SL Y G+ YLLNLIDTPGHVDFS EV+RS++ACQGV+L++DANQ
Sbjct: 130 SLFYQH--HGQTYLLNLIDTPGHVDFSYEVSRSISACQGVLLIVDANQ 175
|
|
| RGD|1310774 Guf1 "GUF1 GTPase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 84/120 (70%), Positives = 98/120 (81%)
Query: 12 KPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVE 70
KPD P EDI RNFSIIAHVDHGKSTLADRLLE+TGT+ + + QVLD LQVE
Sbjct: 39 KPDMSRFPVEDI-----RNFSIIAHVDHGKSTLADRLLELTGTIDKTQKNKQVLDKLQVE 93
Query: 71 QERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ERGITVKAQTASL Y+ G++YLLNLIDTPGHVDFS EV+RSL+ACQGV+L++DAN+
Sbjct: 94 RERGITVKAQTASLFYS--FGGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANE 151
|
|
| UNIPROTKB|F1NX94 GUF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 84/128 (65%), Positives = 99/128 (77%)
Query: 5 FYST-EAAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-SSQ 62
FYS+ + K D A P E I RNFSIIAHVDHGKSTLADRLLE+TGT+ + + Q
Sbjct: 40 FYSSRDKEKIDMSAYPVESI-----RNFSIIAHVDHGKSTLADRLLEITGTIAKTDRNKQ 94
Query: 63 VLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGV 122
VLD LQVE+ERGITVKAQ+ASL Y G YLLNLIDTPGHVDF+ EV+RSL+ACQGV
Sbjct: 95 VLDKLQVERERGITVKAQSASLFYN--YKGVNYLLNLIDTPGHVDFNYEVSRSLSACQGV 152
Query: 123 VLLIDANQ 130
+L++DAN+
Sbjct: 153 LLVVDANE 160
|
|
| MGI|MGI:2140726 Guf1 "GUF1 GTPase homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 9.4e-42, Sum P(2) = 9.4e-42
Identities = 84/120 (70%), Positives = 98/120 (81%)
Query: 12 KPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVE 70
KPD P EDI RNFSIIAHVDHGKSTLADRLLE+TGT+ + + QVLD LQVE
Sbjct: 39 KPDMSRFPVEDI-----RNFSIIAHVDHGKSTLADRLLELTGTIDKTKKNKQVLDKLQVE 93
Query: 71 QERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ERGITVKAQTASL Y+ G++YLLNLIDTPGHVDFS EV+RSL+ACQGV+L++DAN+
Sbjct: 94 RERGITVKAQTASLFYS--FGGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANE 151
|
|
| UNIPROTKB|D4A6V2 Guf1 "Translation factor GUF1, mitochondrial" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 9.4e-42, Sum P(2) = 9.4e-42
Identities = 84/120 (70%), Positives = 98/120 (81%)
Query: 12 KPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVE 70
KPD P EDI RNFSIIAHVDHGKSTLADRLLE+TGT+ + + QVLD LQVE
Sbjct: 39 KPDMSRFPVEDI-----RNFSIIAHVDHGKSTLADRLLELTGTIDKTQKNKQVLDKLQVE 93
Query: 71 QERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ERGITVKAQTASL Y+ G++YLLNLIDTPGHVDFS EV+RSL+ACQGV+L++DAN+
Sbjct: 94 RERGITVKAQTASLFYS--FGGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANE 151
|
|
| UNIPROTKB|Q8N442 GUF1 "Translation factor GUF1, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 78/108 (72%), Positives = 94/108 (87%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVEQERGITVKAQTA 82
P+ IRNFSI+AHVDHGKSTLADRLLE+TGT+ + + QVLD LQVE+ERGITVKAQTA
Sbjct: 64 PVENIRNFSIVAHVDHGKSTLADRLLELTGTIDKTKNNKQVLDKLQVERERGITVKAQTA 123
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
SL Y +G++YLLNLIDTPGHVDFS EV+RSL+ACQGV+L++DAN+
Sbjct: 124 SLFYNC--EGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANE 169
|
|
| UNIPROTKB|F1NX95 GUF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 5.1e-41, Sum P(2) = 5.1e-41
Identities = 84/128 (65%), Positives = 99/128 (77%)
Query: 5 FYST-EAAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-SSQ 62
FYS+ + K D A P E I RNFSIIAHVDHGKSTLADRLLE+TGT+ + + Q
Sbjct: 41 FYSSRDKEKIDMSAYPVESI-----RNFSIIAHVDHGKSTLADRLLEITGTIAKTDRNKQ 95
Query: 63 VLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGV 122
VLD LQVE+ERGITVKAQ+ASL Y G YLLNLIDTPGHVDF+ EV+RSL+ACQGV
Sbjct: 96 VLDKLQVERERGITVKAQSASLFYN--YKGVNYLLNLIDTPGHVDFNYEVSRSLSACQGV 153
Query: 123 VLLIDANQ 130
+L++DAN+
Sbjct: 154 LLVVDANE 161
|
|
| UNIPROTKB|F1S3T1 GUF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
Identities = 76/108 (70%), Positives = 91/108 (84%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVEQERGITVKAQTA 82
P+ RNFSIIAHVDHGKSTLADR LE+TG + + + QVLD LQVE+ERGITVKAQTA
Sbjct: 9 PVENTRNFSIIAHVDHGKSTLADRFLELTGAIDKTKNNKQVLDKLQVERERGITVKAQTA 68
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
SL Y +G++YLLNLIDTPGHVDFS EV+RSL+ACQGV+L++DAN+
Sbjct: 69 SLFYNC--EGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANE 114
|
|
| UNIPROTKB|F1PF69 GUF1 "Translation factor GUF1, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
Identities = 76/107 (71%), Positives = 91/107 (85%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVEQERGITVKAQTAS 83
+ RNFSIIAHVDHGKSTLADRLLE+TG + + + QVLD LQVE+ERGITVKAQTAS
Sbjct: 6 VENTRNFSIIAHVDHGKSTLADRLLELTGAIDKTKNNKQVLDKLQVERERGITVKAQTAS 65
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
L Y +G++YLLNLIDTPGHVDFS EV+RSL+ACQGV+L++DAN+
Sbjct: 66 LFYNC--EGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANE 110
|
|
| UNIPROTKB|A6QLJ3 GUF1 "Translation factor GUF1, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 77/108 (71%), Positives = 92/108 (85%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVEQERGITVKAQTA 82
P+ RNFSIIAHVDHGKSTLADRLLE+TG + + + QVLD LQVE+ERGITVKAQTA
Sbjct: 64 PVENTRNFSIIAHVDHGKSTLADRLLELTGAIDKTKNNKQVLDKLQVERERGITVKAQTA 123
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
SL Y +G++YLLNLIDTPGHVDFS EV+RSL+ACQGV+L++DAN+
Sbjct: 124 SLFYN--YEGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANE 169
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B6H2S6 | GUF1_PENCW | 3, ., 6, ., 5, ., - | 0.5128 | 0.4980 | 0.1921 | yes | N/A |
| C8VPJ1 | GUF1_EMENI | 3, ., 6, ., 5, ., - | 0.5192 | 0.4980 | 0.1933 | yes | N/A |
| Q5VQ69 | GUF1_ORYSJ | 3, ., 6, ., 5, ., - | 0.5117 | 0.5214 | 0.2021 | yes | N/A |
| Q8N442 | GUF1_HUMAN | 3, ., 6, ., 5, ., - | 0.5487 | 0.5252 | 0.2017 | yes | N/A |
| Q9VRH6 | GUF1_DROME | 3, ., 6, ., 5, ., - | 0.5628 | 0.5369 | 0.1982 | yes | N/A |
| Q8C3X4 | GUF1_MOUSE | 3, ., 6, ., 5, ., - | 0.5428 | 0.5486 | 0.2165 | yes | N/A |
| B9WBR8 | GUF1_CANDC | 3, ., 6, ., 5, ., - | 0.5094 | 0.5019 | 0.1972 | yes | N/A |
| A6QLJ3 | GUF1_BOVIN | 3, ., 6, ., 5, ., - | 0.5426 | 0.5252 | 0.2017 | yes | N/A |
| Q9FLE4 | GUF1_ARATH | 3, ., 6, ., 5, ., - | 0.5029 | 0.5330 | 0.2066 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.5 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 257 | |||
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 3e-68 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 2e-64 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 2e-60 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 4e-55 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 2e-41 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 4e-40 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 6e-36 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 7e-35 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 2e-33 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 2e-31 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 8e-30 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 2e-29 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 5e-29 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 8e-29 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 1e-28 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 5e-28 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 7e-28 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 9e-28 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 2e-27 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 4e-25 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 4e-23 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 5e-23 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 1e-22 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 2e-22 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 7e-22 | |
| PRK00007 | 693 | PRK00007, PRK00007, elongation factor G; Reviewed | 3e-21 | |
| PRK12739 | 691 | PRK12739, PRK12739, elongation factor G; Reviewed | 4e-20 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 2e-19 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 2e-19 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 3e-19 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 5e-19 | |
| PRK00741 | 526 | PRK00741, prfC, peptide chain release factor 3; Pr | 1e-17 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 3e-17 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 2e-16 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 8e-16 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 8e-16 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 2e-14 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 8e-14 | |
| cd01883 | 219 | cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1 | 2e-13 | |
| cd04170 | 268 | cd04170, EF-G_bact, Elongation factor G (EF-G) fam | 3e-13 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 4e-13 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 5e-13 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 7e-13 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 1e-12 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 7e-12 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 8e-12 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 9e-12 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 4e-11 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 6e-11 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 1e-10 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 4e-10 | |
| TIGR00483 | 426 | TIGR00483, EF-1_alpha, translation elongation fact | 7e-10 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 1e-09 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 2e-09 | |
| cd09326 | 53 | cd09326, LIM_CRP_like, The LIM domains of Cysteine | 4e-09 | |
| cd01883 | 219 | cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1 | 1e-08 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 1e-08 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 2e-08 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 1e-07 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 1e-07 | |
| PTZ00141 | 446 | PTZ00141, PTZ00141, elongation factor 1- alpha; Pr | 1e-07 | |
| PRK00007 | 693 | PRK00007, PRK00007, elongation factor G; Reviewed | 2e-07 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 5e-07 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 7e-07 | |
| PLN00043 | 447 | PLN00043, PLN00043, elongation factor 1-alpha; Pro | 7e-07 | |
| PRK12739 | 691 | PRK12739, PRK12739, elongation factor G; Reviewed | 9e-07 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 1e-06 | |
| PRK00741 | 526 | PRK00741, prfC, peptide chain release factor 3; Pr | 1e-06 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 1e-06 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 2e-06 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 3e-06 | |
| PLN03126 | 478 | PLN03126, PLN03126, Elongation factor Tu; Provisio | 4e-06 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 8e-06 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 9e-06 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 1e-05 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 1e-05 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 1e-05 | |
| COG0050 | 394 | COG0050, TufB, GTPases - translation elongation fa | 1e-05 | |
| TIGR00483 | 426 | TIGR00483, EF-1_alpha, translation elongation fact | 2e-05 | |
| TIGR00485 | 394 | TIGR00485, EF-Tu, translation elongation factor TU | 2e-05 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-05 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 3e-05 | |
| cd09403 | 54 | cd09403, LIM2_CRP, The second LIM domain of Cystei | 3e-05 | |
| cd09404 | 54 | cd09404, LIM1_MLP84B_like, The LIM domain of Mlp84 | 3e-05 | |
| PLN03127 | 447 | PLN03127, PLN03127, Elongation factor Tu; Provisio | 5e-05 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 6e-05 | |
| cd09482 | 54 | cd09482, LIM2_CRP3, The second LIM domain of Cyste | 8e-05 | |
| PRK05124 | 474 | PRK05124, cysN, sulfate adenylyltransferase subuni | 8e-05 | |
| PRK12735 | 396 | PRK12735, PRK12735, elongation factor Tu; Reviewed | 9e-05 | |
| cd08368 | 53 | cd08368, LIM, LIM is a small protein-protein inter | 2e-04 | |
| PRK00049 | 396 | PRK00049, PRK00049, elongation factor Tu; Reviewed | 2e-04 | |
| TIGR00491 | 590 | TIGR00491, aIF-2, translation initiation factor aI | 2e-04 | |
| TIGR03680 | 406 | TIGR03680, eif2g_arch, translation initiation fact | 3e-04 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 3e-04 | |
| PRK12736 | 394 | PRK12736, PRK12736, elongation factor Tu; Reviewed | 3e-04 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 3e-04 | |
| pfam00412 | 58 | pfam00412, LIM, LIM domain | 3e-04 | |
| cd09840 | 54 | cd09840, LIM2_CRP2, The second LIM domain of Cyste | 3e-04 | |
| CHL00071 | 409 | CHL00071, tufA, elongation factor Tu | 3e-04 | |
| PTZ00141 | 446 | PTZ00141, PTZ00141, elongation factor 1- alpha; Pr | 6e-04 | |
| smart00132 | 54 | smart00132, LIM, Zinc-binding domain present in Li | 9e-04 | |
| cd09401 | 53 | cd09401, LIM_TLP_like, The LIM domains of thymus L | 9e-04 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 0.001 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 0.001 | |
| COG0050 | 394 | COG0050, TufB, GTPases - translation elongation fa | 0.001 | |
| cd09447 | 53 | cd09447, LIM_LASP, The LIM domain of LIM and SH3 P | 0.001 | |
| COG5257 | 415 | COG5257, GCD11, Translation initiation factor 2, g | 0.001 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 0.002 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 0.002 | |
| cd09366 | 55 | cd09366, LIM1_Isl, The first LIM domain of Isl, a | 0.002 | |
| PRK04000 | 411 | PRK04000, PRK04000, translation initiation factor | 0.002 | |
| cd09343 | 59 | cd09343, LIM1_FHL, The first LIM domain of Four an | 0.003 | |
| PRK10512 | 614 | PRK10512, PRK10512, selenocysteinyl-tRNA-specific | 0.004 | |
| cd09393 | 56 | cd09393, LIM3_Lrg1p_like, The third LIM domain of | 0.004 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 3e-68
Identities = 78/158 (49%), Positives = 103/158 (65%), Gaps = 28/158 (17%)
Query: 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-SSQVLDSLQVEQERGITVKAQTASLRYT 87
RNFSIIAH+DHGKSTLADRLLE+TGTV QVLDS+ +E+ERGIT+KAQ L Y
Sbjct: 1 RNFSIIAHIDHGKSTLADRLLELTGTVSEREMKEQVLDSMDLERERGITIKAQAVRLFYK 60
Query: 88 SILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA------------------- 128
+ DGEEYLLNLIDTPGHVDFS EV+RSLAAC+G +L++DA
Sbjct: 61 AK-DGEEYLLNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTLANFYLALENN 119
Query: 129 -------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
N++DL A+P+ +++++ + +D + +
Sbjct: 120 LEIIPVINKIDLPAADPDRVKQEIEDVLGLDASEAILV 157
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (538), Expect = 2e-64
Identities = 77/163 (47%), Positives = 105/163 (64%), Gaps = 28/163 (17%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTA 82
+ IRNFSIIAH+DHGKSTLADRL+E+TGT+ +QVLDS+ +E+ERGIT+KAQ
Sbjct: 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAV 62
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA-------------- 128
L Y + DGE Y+LNLIDTPGHVDFS EV+RSLAAC+G +L++DA
Sbjct: 63 RLNYKA-KDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL 121
Query: 129 ------------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
N++DL A+PE +++++ + ID + +
Sbjct: 122 ALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLV 164
|
Length = 600 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 2e-60
Identities = 78/167 (46%), Positives = 104/167 (62%), Gaps = 28/167 (16%)
Query: 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVEQERGITVK 78
P IRNFSIIAH+DHGKSTLADRLLE+TG + +QVLDS+ +E+ERGIT+K
Sbjct: 1 MTFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIK 60
Query: 79 AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA---------- 128
AQ L Y + DGE Y+LNLIDTPGHVDFS EV+RSLAAC+G +L++DA
Sbjct: 61 AQAVRLNYKA-KDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA 119
Query: 129 ----------------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
N++DL A+PE +++++ + ID + +
Sbjct: 120 NVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV 166
|
Length = 603 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 4e-55
Identities = 77/161 (47%), Positives = 101/161 (62%), Gaps = 28/161 (17%)
Query: 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTASL 84
IRNFSIIAH+DHGKSTLADRLLE TG + QVLDS+ +E+ERGIT+KAQ L
Sbjct: 1 KNIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRL 60
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA---------------- 128
Y + DGE Y+LNLIDTPGHVDFS EV+RSLAAC+G +LL+DA
Sbjct: 61 NYKA-KDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL 119
Query: 129 ----------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
N++DL +A+PE +++++ + +D +
Sbjct: 120 ENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILA 160
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 2e-41
Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 8/106 (7%)
Query: 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTV--LSSGSSQVLDSLQVEQERGITVKAQTASL 84
R RN II HVDHGK+TL D LL +TG + S+ ++VLD L+ E+ERGIT+K S
Sbjct: 2 RHRNIGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSF 61
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ ++ L+N+IDTPGHVDF+ E+ R + G +L++DA +
Sbjct: 62 ------ETKKRLINIIDTPGHVDFTKEMIRGASQADGAILVVDAVE 101
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 4e-40
Identities = 52/105 (49%), Positives = 73/105 (69%), Gaps = 5/105 (4%)
Query: 29 RNFSIIAHVDHGKSTLADRLLEMTGTVL--SSGSSQVLDSLQVEQERGITVKAQTASLRY 86
RN IIAHVDHGK+TL+D LL G + +G ++ LD+ + EQERGIT+K+ SL +
Sbjct: 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYLDTREDEQERGITIKSSAISLYF 60
Query: 87 T---SILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+DG +YL+NLID+PGHVDFS+EVT +L G ++++DA
Sbjct: 61 EYEEEKMDGNDYLINLIDSPGHVDFSSEVTAALRLTDGALVVVDA 105
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 6e-36
Identities = 52/105 (49%), Positives = 73/105 (69%), Gaps = 6/105 (5%)
Query: 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQVEQERGITVKAQTAS 83
+IRN IIAH+DHGK+TL+D LL G ++S +G LD + EQ RGIT+KA S
Sbjct: 19 QIRNIGIIAHIDHGKTTLSDNLLAGAG-MISEELAGEQLALDFDEEEQARGITIKAANVS 77
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ + +G+EYL+NLIDTPGHVDF +VTR++ A G ++++DA
Sbjct: 78 MVHEY--EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDA 120
|
Length = 731 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 7e-35
Identities = 57/141 (40%), Positives = 81/141 (57%), Gaps = 19/141 (13%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKA 79
P+ RIRN I+AH+D GK+TL +R+L TG + G + +D ++ EQERGIT+ +
Sbjct: 6 PLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITS 65
Query: 80 QTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPE 139
+L + +Y +NLIDTPGHVDF+ EV RSL G V+++DA E
Sbjct: 66 AATTLFWKG-----DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAV---------E 111
Query: 140 ACEEQLQTLFN-IDKKSVLRI 159
E Q +T++ DK V RI
Sbjct: 112 GVEPQTETVWRQADKYGVPRI 132
|
Length = 697 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-33
Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 34/150 (22%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG--SSQVLDSLQVEQERGITVKAQTASLR 85
IRN +IIAHVDHGK+TL D LL+ +GT + +V+DS +E+ERGIT+ A+ ++
Sbjct: 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVGERVMDSNDLERERGITILAKNTAIT 61
Query: 86 YTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA----------------- 128
Y ++ +N+IDTPGH DF EV R L+ GV+LL+DA
Sbjct: 62 Y------KDTKINIIDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE 115
Query: 129 ---------NQVDLKNANPEACEEQLQTLF 149
N++D +A PE +++ LF
Sbjct: 116 AGLKPIVVINKIDRPDARPEEVVDEVFDLF 145
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-31
Identities = 51/132 (38%), Positives = 67/132 (50%), Gaps = 17/132 (12%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ--VLDSLQVEQERGITVKAQTASLRYT 87
N +I HVDHGK+TL LL TG + G+ + LD+L+ E+ERGIT+K +
Sbjct: 1 NVGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEW- 59
Query: 88 SILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQLQT 147
+ +N IDTPGH DFS E R LA G +L++DAN E E Q +
Sbjct: 60 -----PKRRINFIDTPGHEDFSKETVRGLAQADGALLVVDAN---------EGVEPQTRE 105
Query: 148 LFNIDKKSVLRI 159
NI L I
Sbjct: 106 HLNIALAGGLPI 117
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-30
Identities = 40/57 (70%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 202 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-SSQVLDSLQVEQERGITVKAQTASL 257
RNFSIIAH+DHGKSTLADRLLE+TGTV QVLDS+ +E+ERGIT+KAQ L
Sbjct: 1 RNFSIIAHIDHGKSTLADRLLELTGTVSEREMKEQVLDSMDLERERGITIKAQAVRL 57
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 197 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTA 255
+ IRNFSIIAH+DHGKSTLADRL+E+TGT+ +QVLDS+ +E+ERGIT+KAQ
Sbjct: 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAV 62
Query: 256 SL 257
L
Sbjct: 63 RL 64
|
Length = 600 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-29
Identities = 51/108 (47%), Positives = 72/108 (66%), Gaps = 6/108 (5%)
Query: 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTASL 84
+IRN S+IAHVDHGKSTL D L+ G + S +G ++ D+ EQERGIT+K+ SL
Sbjct: 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISL 77
Query: 85 RYTSILD----GEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
Y L+ + +L+NLID+PGHVDFS+EVT +L G ++++D
Sbjct: 78 YYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDC 125
|
Length = 836 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 8e-29
Identities = 52/112 (46%), Positives = 69/112 (61%), Gaps = 12/112 (10%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVL--SSGSSQVLDSLQVEQERGITVKAQTASLR 85
IRN S+IAHVDHGKSTL D L+ G + +G ++ D+ E ERGIT+K+ SL
Sbjct: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLY 78
Query: 86 YT----------SILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLID 127
Y DG EYL+NLID+PGHVDFS+EVT +L G ++++D
Sbjct: 79 YEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVD 130
|
Length = 843 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-28
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 20/143 (13%)
Query: 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITV 77
++P+ +IRN I+AH+D GK+TL +R+L TG + G + V D + EQERGIT+
Sbjct: 2 EMPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITI 61
Query: 78 KAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNAN 137
++ S + + + +NLIDTPGH+DF+ EV RSL G V++ DA
Sbjct: 62 ESAATSCDW------DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAV-------- 107
Query: 138 PEACEEQLQTLFN-IDKKSVLRI 159
+ Q +T++ D+ + R+
Sbjct: 108 -TGVQPQTETVWRQADRYGIPRL 129
|
Length = 687 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-28
Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 8/105 (7%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ--VLDSLQVEQERGITVKAQTASLR 85
IRN +IIAHVDHGK+TL D LL+ +GT ++ + V+DS +E+ERGIT+ A+ ++R
Sbjct: 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR 60
Query: 86 YTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
Y +N++DTPGH DF EV R L GV+LL+DA++
Sbjct: 61 Y------NGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE 99
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 7e-28
Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 8/104 (7%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ--VLDSLQVEQERGITVKAQTASLR 85
IRN +IIAHVDHGK+TL D LL+ +GT V+DS +E+ERGIT+ A+ ++
Sbjct: 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN 64
Query: 86 YTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
Y +N++DTPGH DF EV R L+ GV+LL+DA+
Sbjct: 65 Y------NGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDAS 102
|
Length = 603 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 9e-28
Identities = 40/66 (60%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 193 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-LSSGSSQVLDSLQVEQERGITVK 251
P IRNFSIIAH+DHGKSTLADRLLE+TG + +QVLDS+ +E+ERGIT+K
Sbjct: 1 MTFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIK 60
Query: 252 AQTASL 257
AQ L
Sbjct: 61 AQAVRL 66
|
Length = 603 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-27
Identities = 49/104 (47%), Positives = 68/104 (65%), Gaps = 4/104 (3%)
Query: 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTASL 84
IRN I+AH+DHGK+TL+D LL G + +G LD + EQERGIT+ A S+
Sbjct: 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSM 77
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ +G EYL+NLIDTPGHVDF +VTR++ A G ++++ A
Sbjct: 78 VHE--YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCA 119
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-25
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 29 RNFSIIAHVDHGKSTLADRLLEMT-----GTVLSSGSSQVLDSLQVEQERGITVKAQTAS 83
RN I H+ HGK++L D L+E T L + D+ + EQERGI++K+ S
Sbjct: 1 RNVCIAGHLHHGKTSLLDMLIEQTHKRTPSVKLGWKPLRYTDTRKDEQERGISIKSNPIS 60
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
L G+ YL+N+IDTPGHV+F +EV +L C GVVL++D
Sbjct: 61 LVLED-SKGKSYLINIIDTPGHVNFMDEVAAALRLCDGVVLVVDV 104
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 4e-23
Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 10/103 (9%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASLR 85
N I+AHVD GK+TL + LL +G + GS + DS+++E++RGIT+ + AS +
Sbjct: 1 NIGILAHVDAGKTTLTESLLYTSGAIRELGSVDKGTTRTDSMELERQRGITIFSAVASFQ 60
Query: 86 YTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ E+ +N+IDTPGH+DF EV RSL+ G +L+I A
Sbjct: 61 W------EDTKVNIIDTPGHMDFIAEVERSLSVLDGAILVISA 97
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 5e-23
Identities = 38/56 (67%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Query: 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQ 253
IRNFSIIAH+DHGKSTLADRLLE TG + QVLDS+ +E+ERGIT+KAQ
Sbjct: 1 KNIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQ 56
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 1e-22
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 36/155 (23%)
Query: 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ----VLDSLQVEQERGITVK 78
+ R RN I AH+D GK+T +R+L TG + G +D ++ E+ERGIT+
Sbjct: 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITIT 64
Query: 79 AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA---------- 128
+ ++ + + + +N+IDTPGHVDF+ EV RSL G V ++DA
Sbjct: 65 SAATTVFW------KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET 118
Query: 129 ----------------NQVDLKNANPEACEEQLQT 147
N++D AN Q++
Sbjct: 119 VWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQ 153
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 2e-22
Identities = 47/106 (44%), Positives = 73/106 (68%), Gaps = 8/106 (7%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ--VLDSLQVEQERGITVKAQTA 82
I ++RN +IIAHVDHGK+TL D+LL+ +GT S +Q V+DS +E+ERGIT+ A+
Sbjct: 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNT 61
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
++++ +Y +N++DTPGH DF EV R ++ V+L++DA
Sbjct: 62 AIKWN------DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDA 101
|
Length = 607 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 7e-22
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 36/152 (23%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASLR 85
N IIAH+D GK+T +R+L TG + G +D ++ E+ERGIT+ Q+A+
Sbjct: 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDWMEQERERGITI--QSAA-- 56
Query: 86 YTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA----------------- 128
T+ +++ +N+IDTPGHVDF+ EV RSL G V + DA
Sbjct: 57 -TTC-FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVQPQTETVWRQADR 114
Query: 129 ---------NQVDLKNANPEACEEQLQTLFNI 151
N++D A+ EQ++
Sbjct: 115 YGVPRIAFVNKMDRTGADFYRVVEQIREKLGA 146
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 3e-21
Identities = 45/115 (39%), Positives = 64/115 (55%), Gaps = 14/115 (12%)
Query: 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITV 77
+ P+ R RN I+AH+D GK+T +R+L TG G + +D ++ EQERGIT+
Sbjct: 4 ETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITI 63
Query: 78 K--AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
A T + ++ +N+IDTPGHVDF+ EV RSL G V + DA
Sbjct: 64 TSAATTCFWK--------DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVG 110
|
Length = 693 |
| >gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 4e-20
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 16/112 (14%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERGITVK 78
P+ + RN I+AH+D GK+T +R+L TG + G++ +D ++ EQERGIT+
Sbjct: 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAAT-MDWMEQEQERGITIT 62
Query: 79 --AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
A T + + +N+IDTPGHVDF+ EV RSL G V + DA
Sbjct: 63 SAATTCFWK--------GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDA 106
|
Length = 691 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 2e-19
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTV--LSSGSSQVLDSLQVEQERGITVKAQTASL 257
R RN II HVDHGK+TL D LL +TG + S+ ++VLD L+ E+ERGIT+K S
Sbjct: 2 RHRNIGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSF 61
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-19
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 18/114 (15%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQ--VLDSLQVEQERGIT 76
+AR R F+II+H D GK+TL ++LL + GTV S + D +++E++RGI+
Sbjct: 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGIS 68
Query: 77 VKAQTASLRYTSIL--DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
V +S++ D + L+NL+DTPGH DFS + R+L A V++IDA
Sbjct: 69 VT--------SSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDA 114
|
Length = 528 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 86.3 bits (215), Expect = 3e-19
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 36/148 (24%)
Query: 34 IAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASLRYTSI 89
+ H GK+TL + +L TG + G + +D + E+ERGI++ + + +
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--- 57
Query: 90 LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA--------------------- 128
+ + +NLIDTPGHVDF+ EV R+L G V+++ A
Sbjct: 58 ---KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP 114
Query: 129 -----NQVDLKNANPEACEEQLQTLFNI 151
N++D A+ QLQ
Sbjct: 115 RIIFVNKMDRAGADFFRVLAQLQEKLGA 142
|
Length = 668 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 5e-19
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 14/110 (12%)
Query: 27 RIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQ--VLDSLQVEQERGITVK 78
R R F+II+H D GK+TL ++LL + G V + S + D +++E++RGI+V
Sbjct: 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGAVKARKSRKHATSDWMEIEKQRGISVT 60
Query: 79 AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + ++NL+DTPGH DFS + R+L A V++IDA
Sbjct: 61 SSVMQFEY------KGCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDA 104
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 1e-17
Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 18/114 (15%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQVLDS--LQVEQERGIT 76
+A+ R F+II+H D GK+TL ++LL + GTV S + S +++E++RGI+
Sbjct: 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGIS 66
Query: 77 VKAQTASLRYTSIL--DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
V +S++ + L+NL+DTPGH DFS + R+L A +++IDA
Sbjct: 67 VT--------SSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDA 112
|
Length = 526 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 3e-17
Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 14/112 (12%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQVLDS--LQVEQERGIT 76
+ + R F+II+H D GK+T+ +++L + G V GS + S +++E++RGI+
Sbjct: 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGIS 67
Query: 77 VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + L+NL+DTPGH DFS + R+L A +++IDA
Sbjct: 68 ITTSVMQFPY------RDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDA 113
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 2e-16
Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 202 RNFSIIAHVDHGKSTLADRLLEMTGTVL--SSGSSQVLDSLQVEQERGITVKAQTASL 257
RN IIAHVDHGK+TL+D LL G + +G ++ LD+ + EQERGIT+K+ SL
Sbjct: 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYLDTREDEQERGITIKSSAISL 58
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 8e-16
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS---SGSSQVLDSLQVEQERGITVKAQTAS 256
+IRN IIAH+DHGK+TL+D LL G ++S +G LD + EQ RGIT+KA S
Sbjct: 19 QIRNIGIIAHIDHGKTTLSDNLLAGAG-MISEELAGEQLALDFDEEEQARGITIKAANVS 77
Query: 257 L 257
+
Sbjct: 78 M 78
|
Length = 731 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 8e-16
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 197 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKA 252
P+ RIRN I+AH+D GK+TL +R+L TG + G + +D ++ EQERGIT+ +
Sbjct: 6 PLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITS 65
Query: 253 QTASL 257
+L
Sbjct: 66 AATTL 70
|
Length = 697 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-14
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG--SSQVLDSLQVEQERGITVKAQTAS 256
IRN +IIAHVDHGK+TL D LL+ +GT + +V+DS +E+ERGIT+ A+ +
Sbjct: 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVGERVMDSNDLERERGITILAKNTA 59
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 8e-14
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTASL 257
+IRN S+IAHVDHGKSTL D L+ G + S +G ++ D+ EQERGIT+K+ SL
Sbjct: 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISL 77
|
Length = 836 |
| >gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 2e-13
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 33/101 (32%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 72
N +I HVD GKSTL LL G V + S + VLD L+ E+E
Sbjct: 1 NLVVIGHVDAGKSTLTGHLLYKLGGVDKRTIEKYEKEAKEMGKESFKYAWVLDKLKEERE 60
Query: 73 RGITV-----KAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108
RG+T+ K +T R+T +ID PGH DF
Sbjct: 61 RGVTIDVGLAKFETEKYRFT-----------IIDAPGHRDF 90
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 219 |
| >gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-13
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 36/150 (24%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASLR 85
N +++ H GK+TLA+ LL TG + G + V D E++R ++++ A L
Sbjct: 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGRVEDGNTVSDYDPEEKKRKMSIETSVAPLE 60
Query: 86 YTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA----------------- 128
+ + +NLIDTPG+ DF E +L A +++++A
Sbjct: 61 W------NGHKINLIDTPGYADFVGETLSALRAVDAALIVVEAQSGVEVGTEKVWEFLDD 114
Query: 129 ---------NQVDLKNANPEACEEQLQTLF 149
N++D A+ + L+ F
Sbjct: 115 AKLPRIIFINKMDRARADFDKTLAALREAF 144
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-13
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ--VLDSLQVEQERGITVKAQTASL 257
N +I HVDHGK+TL LL TG + G+ + LD+L+ E+ERGIT+K
Sbjct: 1 NVGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEF 57
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 5e-13
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ--VLDSLQVEQERGITVKAQTASL 257
IRN +IIAHVDHGK+TL D LL+ +GT V+DS +E+ERGIT+ A+ ++
Sbjct: 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAV 63
|
Length = 603 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 7e-13
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVL--SSGSSQVLDSLQVEQERGITVKAQTASL 257
IRN S+IAHVDHGKSTL D L+ G + +G ++ D+ E ERGIT+K+ SL
Sbjct: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISL 77
|
Length = 843 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 29/59 (49%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ--VLDSLQVEQERGITVKAQTASL 257
IRN +IIAHVDHGK+TL D LL+ +GT ++ + V+DS +E+ERGIT+ A+ ++
Sbjct: 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI 59
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 7e-12
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 34/136 (25%)
Query: 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDG 92
I+ + GKSTL +RLL ++ G T T + DG
Sbjct: 6 IVGDPNVGKSTLLNRLLGNKISITEYKP-------------GTTRNYVTTVIEE----DG 48
Query: 93 EEYLLNLIDTPGHVDFS-------NEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQL 145
+ Y NL+DT G D+ V SL V+L++D E E+Q
Sbjct: 49 KTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVE---------EILEKQT 99
Query: 146 QTLFNI-DKKSVLRIW 160
+ + + + + +
Sbjct: 100 KEIIHHAESGVPIILV 115
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 8e-12
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 25/119 (21%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 72
N I HVD GKSTL RLL G + L S + VLD + E+E
Sbjct: 9 NLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERE 68
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF-SNEVTRSLAACQGVVLLIDANQ 130
RG+T+ + + ++Y +ID PGH DF N +T + A VL++DA
Sbjct: 69 RGVTIDVAHSK------FETDKYNFTIIDAPGHRDFVKNMITGASQADVA-VLVVDARD 120
|
Length = 428 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 9e-12
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 23/96 (23%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGSSQ---VLDSLQVEQE 72
N ++I HVDHGKSTL RLL TG + S + V+D L+ E+E
Sbjct: 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERE 67
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108
RG+T+ A ++ + ++Y ++D PGH DF
Sbjct: 68 RGVTIDL--AHKKF----ETDKYYFTIVDCPGHRDF 97
|
Length = 425 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 4e-11
Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ--VLDSLQVEQERGITVKAQTA 255
I ++RN +IIAHVDHGK+TL D+LL+ +GT S +Q V+DS +E+ERGIT+ A+
Sbjct: 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNT 61
Query: 256 SL 257
++
Sbjct: 62 AI 63
|
Length = 607 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 6e-11
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 195 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITV 250
++P+ +IRN I+AH+D GK+TL +R+L TG + G + V D + EQERGIT+
Sbjct: 2 EMPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITI 61
Query: 251 KAQTASL 257
++ S
Sbjct: 62 ESAATSC 68
|
Length = 687 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-10
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVL-----------SSGS-------SQVLDSLQVEQ 71
F VD GKSTL RLL + ++ SSG+ + ++D LQ E+
Sbjct: 1 RFITCGSVDDGKSTLIGRLLYDSKSIFEDQLAALERSKSSGTQGEKLDLALLVDGLQAER 60
Query: 72 ERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS-NEVTRSLAACQGVVLLIDA 128
E+GIT+ A RY S +++ + DTPGH ++ N VT + +LL+DA
Sbjct: 61 EQGITI--DVAY-RYFS-TPKRKFI--IADTPGHEQYTRNMVT-GASTADLAILLVDA 111
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-10
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTASL 257
IRN I+AH+DHGK+TL+D LL G + +G LD + EQERGIT+ A S+
Sbjct: 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSM 77
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-10
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 23/117 (19%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGSSQ---VLDSLQVEQE 72
N + I HVDHGKST LL G + S + V+D L+ E+E
Sbjct: 9 NVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERE 68
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
RG+T+ + ++Y + ++D PGH DF + + VL++
Sbjct: 69 RGVTIDVAHWK------FETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVG 119
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASL 257
N I+AHVD GK+TL + LL +G + GS + DS+++E++RGIT+ + AS
Sbjct: 1 NIGILAHVDAGKTTLTESLLYTSGAIRELGSVDKGTTRTDSMELERQRGITIFSAVASF 59
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 196 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ----VLDSLQVEQERGITV 250
+ R RN I AH+D GK+T +R+L TG + G +D ++ E+ERGIT+
Sbjct: 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITI 63
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|188712 cd09326, LIM_CRP_like, The LIM domains of Cysteine Rich Protein (CRP) family | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-09
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 158 RIWHRRCFSCADCHRSLDSTNLND 181
+ WH+ CF+CA C++ LDST L +
Sbjct: 19 KSWHKSCFTCAVCNKRLDSTTLAE 42
|
The LIM domains of Cysteine Rich Protein (CRP) family: Cysteine-rich proteins (CRPs) are characterized by the presence of two LIM domains linked to a short glycine-rich repeats (GRRs). The known CRP family members include CRP1, CRP2, and CRP3/MLP. CRP1, CRP2 and CRP3 share a conserved nuclear targeting signal (K/R-K/R-Y-G-P-K), which supports the fact that these proteins function not only in the cytoplasm but also in the nucleus. CRPs control regulatory pathways during cellular differentiation, and involve in complex transcription control, and the organization as well as the arrangement of the myofibrillar/cytoskeletal network. CRP1, CRP2, and CRP3/MLP are involved in promoting protein assembly along the actin-based cytoskeleton. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53 |
| >gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-08
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 245
N +I HVD GKSTL LL G V + S + VLD L+ E+E
Sbjct: 1 NLVVIGHVDAGKSTLTGHLLYKLGGVDKRTIEKYEKEAKEMGKESFKYAWVLDKLKEERE 60
Query: 246 RGITV 250
RG+T+
Sbjct: 61 RGVTI 65
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 219 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-08
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 36 HVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEY 95
H+DHGK+TL L + D L E++RGIT+ L + + +
Sbjct: 7 HIDHGKTTLIKALTGIET-----------DRLPEEKKRGITI-----DLGFAYLDLPDGK 50
Query: 96 LLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
L ID PGH F + V+L++ A+
Sbjct: 51 RLGFIDVPGHEKFVKNMLAGAGGIDAVLLVVAAD 84
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 33/118 (27%)
Query: 36 HVDHGKSTLADRLLEMTGTV-------LSSGSSQ------------VLDSLQVEQERGIT 76
VD GKSTL RLL T + L S + ++D L+ E+E+GIT
Sbjct: 14 SVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGIT 73
Query: 77 VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLA----ACQGVVLLIDANQ 130
+ + RY S + ++++ DTPGH + TR++A +LL+DA +
Sbjct: 74 IDV---AYRYFST-EKRKFII--ADTPGHEQY----TRNMATGASTADLAILLVDARK 121
|
Length = 431 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQ--VLDSLQVEQERGIT 249
+AR R F+II+H D GK+TL ++LL + GTV S + D +++E++RGI+
Sbjct: 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGIS 68
Query: 250 V 250
V
Sbjct: 69 V 69
|
Length = 528 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGSSQ---VLDSLQVEQE 245
N ++I HVDHGKSTL RLL TG + S + V+D L+ E+E
Sbjct: 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERE 67
Query: 246 RGITV 250
RG+T+
Sbjct: 68 RGVTI 72
|
Length = 425 |
| >gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 33/101 (32%)
Query: 30 NFSIIAHVDHGKSTLADRLL--------------EMTGTVLSSGS---SQVLDSLQVEQE 72
N +I HVD GKST L+ E + GS + VLD L+ E+E
Sbjct: 9 NLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 68
Query: 73 RGITV-----KAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108
RGIT+ K +T +T +ID PGH DF
Sbjct: 69 RGITIDIALWKFETPKYYFT-----------IIDAPGHRDF 98
|
Length = 446 |
| >gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 195 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITV 250
+ P+ R RN I+AH+D GK+T +R+L TG G + +D ++ EQERGIT+
Sbjct: 4 ETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITI 63
|
Length = 693 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-07
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 202 RNFSIIAHVDHGKSTLADRLLEMT-----GTVLSSGSSQVLDSLQVEQERGITVKAQTAS 256
RN I H+ HGK++L D L+E T L + D+ + EQERGI++K+ S
Sbjct: 1 RNVCIAGHLHHGKTSLLDMLIEQTHKRTPSVKLGWKPLRYTDTRKDEQERGISIKSNPIS 60
Query: 257 L 257
L
Sbjct: 61 L 61
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-07
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 200 RIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQ--VLDSLQVEQERGITV 250
R R F+II+H D GK+TL ++LL + G V + S + D +++E++RGI+V
Sbjct: 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGAVKARKSRKHATSDWMEIEKQRGISV 59
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 7e-07
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 23/116 (19%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV-----------------LSSGSSQVLDSLQVEQE 72
N +I HVD GKST L+ G + S + VLD L+ E+E
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERE 68
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
RGIT+ A ++ + +Y +ID PGH DF + + VL+ID+
Sbjct: 69 RGITI--DIALWKFETT----KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDS 118
|
Length = 447 |
| >gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 9e-07
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 197 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERGITV 250
P+ + RN I+AH+D GK+T +R+L TG + G++ +D ++ EQERGIT+
Sbjct: 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAAT-MDWMEQEQERGITI 61
|
Length = 691 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-06
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITV 250
N IIAH+D GK+T +R+L TG + G +D ++ E+ERGIT+
Sbjct: 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDWMEQERERGITI 52
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-06
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQVLDS--LQVEQERGIT 249
+A+ R F+II+H D GK+TL ++LL + GTV S + S +++E++RGI+
Sbjct: 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGIS 66
Query: 250 V 250
V
Sbjct: 67 V 67
|
Length = 526 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI 89
+ HVDHGK+TL L + D L E++RG+T+ L +
Sbjct: 2 IIATAGHVDHGKTTLLKALTGIAA-----------DRLPEEKKRGMTI-----DLGFAYF 45
Query: 90 LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+Y L ID PGH F + +L++DA++
Sbjct: 46 -PLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE 85
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 35 AHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEE 94
H+DHGK+TL L TG V D L E++RGIT+ L + E+
Sbjct: 7 GHIDHGKTTLLKAL---TGGVT--------DRLPEEKKRGITID-----LGFYY-RKLED 49
Query: 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
++ ID PGH DF + + L +L++ A++
Sbjct: 50 GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADE 85
|
Length = 447 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 25/113 (22%)
Query: 37 VDHGKSTLADRLLEMTGTV-------LSSGS------------SQVLDSLQVEQERGITV 77
VD GKSTL RLL T + L S + ++D LQ E+E+GIT+
Sbjct: 9 VDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITI 68
Query: 78 KAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ RY S D ++++ DTPGH ++ + + VLL+DA +
Sbjct: 69 DV---AYRYFST-DKRKFIV--ADTPGHEQYTRNMATGASTADLAVLLVDARK 115
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 4e-06
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-----LDSLQVEQERGITVKAQTASL 84
N I HVDHGK+TL L T + S G S +D+ E+ RGIT+ TA++
Sbjct: 83 NIGTIGHVDHGKTTLTAAL---TMALASMGGSAPKKYDEIDAAPEERARGITI--NTATV 137
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLI 126
Y + E +D PGH D+ + A G +L++
Sbjct: 138 EYET----ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVV 175
|
Length = 478 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 8e-06
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 207 IAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITV 250
+ H GK+TL + +L TG + G + +D + E+ERGI++
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISI 48
|
Length = 668 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 9e-06
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 37/107 (34%)
Query: 33 IIAHVDHGKSTLADRL----------LEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA 82
I+ HVDHGK+TL D++ +T + G+ QV L V + GIT
Sbjct: 10 IMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI---GAYQVP--LDVIKIPGITF----- 59
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
IDTPGH F+ R + +L++ A+
Sbjct: 60 -----------------IDTPGHEAFTAMRARGASVTDIAILVVAAD 89
|
Length = 509 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQVLDS--LQVEQERGIT 249
+ + R F+II+H D GK+T+ +++L + G V GS + S +++E++RGI+
Sbjct: 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGIS 67
Query: 250 V 250
+
Sbjct: 68 I 68
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 17/72 (23%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 245
N I HVD GKSTL RLL G + L S + VLD + E+E
Sbjct: 9 NLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERE 68
Query: 246 RGITVKAQTASL 257
RG+T+ +
Sbjct: 69 RGVTIDVAHSKF 80
|
Length = 428 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-05
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 24/100 (24%)
Query: 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQE-RGIT--VKAQTASLRYTSI 89
++ HVDHGK+TL D++ + + V E GIT + A Y
Sbjct: 5 VMGHVDHGKTTLLDKIRK----------TNV-----AAGEAGGITQHIGA------YQVP 43
Query: 90 LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+D + + IDTPGH F+N R + +L++ A+
Sbjct: 44 IDVKIPGITFIDTPGHEAFTNMRARGASVTDIAILVVAAD 83
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQV-----EQERGITVKAQTASL 84
N I HVDHGK+TL + T + G ++ Q+ E+ RGIT+ TA +
Sbjct: 14 NVGTIGHVDHGKTTLTAAI---TTVLAKKGGAEAKAYDQIDNAPEEKARGITI--NTAHV 68
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
Y Y +D PGH D+ + A G +L++ A
Sbjct: 69 EYE--TANRHY--AHVDCPGHADYVKNMITGAAQMDGAILVVAA 108
|
Length = 394 |
| >gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGSSQ---VLDSLQVEQE 245
N + I HVDHGKST LL G + S + V+D L+ E+E
Sbjct: 9 NVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERE 68
Query: 246 RGITV 250
RG+T+
Sbjct: 69 RGVTI 73
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426 |
| >gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 30 NFSIIAHVDHGKSTLA---DRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRY 86
N I HVDHGK+TL +L G + Q+ D+ E+ RGIT+ TA + Y
Sbjct: 14 NIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQI-DNAPEEKARGITI--NTAHVEY 70
Query: 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ + Y +D PGH D+ + A G +L++ A
Sbjct: 71 ET--ENRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVSA 108
|
This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 25/130 (19%)
Query: 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDG 92
++ GKS+L + LL + +V G T D
Sbjct: 2 VVGRGGVGKSSLLNALLG-------------GEVGEVSDVPGTTRDPDVYVKEL----DK 44
Query: 93 EEYLLNLIDTPGHVDFSNEVTRSLAA-----CQGVVLLIDANQVDLKNANPEACEEQLQT 147
+ L L+DTPG +F LA ++L++D+ + + +A L+
Sbjct: 45 GKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDS---TDRESEEDAKLLILRR 101
Query: 148 LFNIDKKSVL 157
L +L
Sbjct: 102 LRKEGIPIIL 111
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 18/66 (27%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVL-----------SSGS-------SQVLDSLQVEQ 244
F VD GKSTL RLL + ++ SSG+ + ++D LQ E+
Sbjct: 1 RFITCGSVDDGKSTLIGRLLYDSKSIFEDQLAALERSKSSGTQGEKLDLALLVDGLQAER 60
Query: 245 ERGITV 250
E+GIT+
Sbjct: 61 EQGITI 66
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|188787 cd09403, LIM2_CRP, The second LIM domain of Cysteine Rich Protein (CRP) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 3e-05
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 160 WHRRCFSCADCHRSLDSTNLND 181
WH+ CF CA C +SL+ST L D
Sbjct: 21 WHKNCFRCAKCGKSLESTTLAD 42
|
The second LIM domain of Cysteine Rich Protein (CRP): Cysteine-rich proteins (CRPs) are characterized by the presence of two LIM domains linked to a short glycine-rich repeats (GRRs). The CRP family members include CRP1, CRP2, CRP3/MLP. CRP1, CRP2 and CRP3 share a conserved nuclear targeting signal (K/R-K/R-Y-G-P-K), which supports the fact that these proteins function not only in the cytoplasm but also in the nucleus. CRPs control regulatory pathways during cellular differentiation, and involve in complex transcription control, and the organization as well as the arrangement of the myofibrillar/cytoskeletal network. It is evident that CRP1, CRP2, and CRP3/MLP are involved in promoting protein assembly along the actin-based cytoskeleton. Although members of the CRP family share common binding partners, they are also capable of recognizing different and specific targets. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residu es, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 54 |
| >gnl|CDD|188788 cd09404, LIM1_MLP84B_like, The LIM domain of Mlp84B and Mlp60A | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 3e-05
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 160 WHRRCFSCADCHRSLDSTN 178
WH+ CF C C++ LDSTN
Sbjct: 22 WHKMCFKCGMCNKLLDSTN 40
|
The LIM domain of Mlp84B and Mlp60A: Mlp84B and Mlp60A belong to the CRP LIM domain protein family. The Mlp84B protein contains five copies of the LIM domains, each followed by a Glycin Rich Region (GRR). However, only the first LIM domain of Mlp84B is in this family. Mlp60A exhibits only one LIM domain linked to a glycin-rich region. Mlp84B and Mlp60A are muscle specific proteins and have been implicated in muscle differentiation. While Mlp84B transcripts are enriched at the terminal ends of muscle fibers, Mlp60A transcripts are found throughout the muscle fibers. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 54 |
| >gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 24/109 (22%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-----LDSLQVEQERGIT-----VKA 79
N I HVDHGK+TL +T + G ++ +D E+ RGIT V+
Sbjct: 63 NVGTIGHVDHGKTTLTA---AITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY 119
Query: 80 QTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+TA Y +D PGH D+ + A G +L++ A
Sbjct: 120 ETAKRHYAH-----------VDCPGHADYVKNMITGAAQMDGGILVVSA 157
|
Length = 447 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-05
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITV-------KAQT 81
N ++ HVD GK++LA LS S+ D QERGIT+ +
Sbjct: 2 NVGLLGHVDSGKTSLA--------KALSEIASTAAFDKNPQSQERGITLDLGFSSFEVDK 53
Query: 82 ASLRYTSILDG-EEYLLNLIDTPGHVD 107
+ E Y + L+D PGH
Sbjct: 54 PKHLEDNENPQIENYQITLVDCPGHAS 80
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|188866 cd09482, LIM2_CRP3, The second LIM domain of Cysteine Rich Protein 3 (CRP3/MLP) | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 8e-05
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 160 WHRRCFSCADCHRSLDSTNLND 181
WH+ CF CA C +SL+ST + D
Sbjct: 21 WHKTCFRCAICGKSLESTTVTD 42
|
The second LIM domain of Cysteine Rich Protein 3 (CRP3/MLP): Cysteine-rich proteins (CRPs) are characterized by the presence of two LIM domains linked to short glycine-rich repeats (GRRs). The CRP family members include CRP1, CRP2, CRP3/MLP and TLPCRP1, CRP2 and CRP3 share a conserved nuclear targeting signal (K/R-K/R-Y-G-P-K), which supports the fact that these proteins function not only in the cytoplasm but also in the nucleus. CRPs control regulatory pathways during cellular differentiation, and involve in complex transcription circuits, and the organization as well as the arrangement of the myofibrillar/cytoskeletal network.CRP3 also called Muscle LIM Protein (MLP), which is a striated muscle-specific factor that enhances myogenic differentiation. The second LIM domain of CRP3/MLP interacts with cytoskeletal protein beta-spectrin. CRP3/MLP also interacts with the basic helix-loop-helix myogenic transcription factors MyoD, myogenin, and MRF4 thereby increasing their affinity for specific DNA regulatory elements. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 54 |
| >gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-05
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 33/115 (28%)
Query: 37 VDHGKSTLADRLLEMTGTV-------LSSGSSQV------------LDSLQVEQERGITV 77
VD GKSTL RLL T + L + S + +D LQ E+E+GIT+
Sbjct: 36 VDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITI 95
Query: 78 KAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAA----CQGVVLLIDA 128
+ RY S + +++ + DTPGH + TR++A C +LLIDA
Sbjct: 96 D---VAYRYFST-EKRKFI--IADTPGH----EQYTRNMATGASTCDLAILLIDA 140
|
Length = 474 |
| >gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 9e-05
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 26/90 (28%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQV-----EQERGIT-----VK 78
N I HVDHGK+TL + VL+ G + Q+ E+ RGIT V+
Sbjct: 14 NVGTIGHVDHGKTTLTAAIT----KVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVE 69
Query: 79 AQTASLRYTSILDGEEYLLNLIDTPGHVDF 108
+TA+ Y +D PGH D+
Sbjct: 70 YETANRHYAH-----------VDCPGHADY 88
|
Length = 396 |
| >gnl|CDD|188711 cd08368, LIM, LIM is a small protein-protein interaction domain, containing two zinc fingers | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 2e-04
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 158 RIWHRRCFSCADCHRSLD 175
+ WH CF C+ C + L
Sbjct: 19 KKWHPECFKCSVCGKPLG 36
|
LIM domains are identified in a diverse group of proteins with wide variety of biological functions, including gene expression regulation, cell fate determination, cytoskeleton organization, tumor formation and development. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. They perform their functions through interactions with other protein partners. LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The consensus sequence of LIM domain has been defined as C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16, 21)-C-x(2,3)-[CHD] (where X denotes any amino acid). Length = 53 |
| >gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-04
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQV-----EQERGITVKAQTAS 83
N I HVDHGK+TL + VL+ G ++ Q+ E+ RGIT+ TA
Sbjct: 14 NVGTIGHVDHGKTTLTAAIT----KVLAKKGGAEAKAYDQIDKAPEEKARGITI--NTAH 67
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDF 108
+ Y + + Y +D PGH D+
Sbjct: 68 VEYET--EKRHY--AHVDCPGHADY 88
|
Length = 396 |
| >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Query: 32 SIIAHVDHGKSTLADRLL-------EMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASL 84
S++ HVDHGK+TL D++ E G G++++ + +E G +K L
Sbjct: 8 SVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDV-IEGICGDLLKKFKIRL 66
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ +L IDTPGH F+N R A +L++D N+
Sbjct: 67 KIPGLL--------FIDTPGHEAFTNLRKRGGALADLAILIVDINE 104
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590 |
| >gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 31/121 (25%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK---AQT----- 81
N ++ HVDHGK+TL L TG + S E +RGI+++ A
Sbjct: 6 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSE--------ELKRGISIRLGYADAEIYKC 54
Query: 82 ----ASLRYTS-----ILDGEEYLL---NLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
YT+ E LL + +D PGH + A G +L+I AN
Sbjct: 55 PECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAAN 114
Query: 130 Q 130
+
Sbjct: 115 E 115
|
This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 26/86 (30%)
Query: 34 IAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQV-----EQERGIT-----VKAQTA 82
I HVDHGK+TL + VL+ G ++ ++ E+ RGIT V+ +TA
Sbjct: 8 IGHVDHGKTTLTAAIT----KVLAKKGGAKAKKYDEIDKAPEEKARGITINTAHVEYETA 63
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDF 108
+ Y +D PGH D+
Sbjct: 64 NRHYAH-----------VDCPGHADY 78
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 22/108 (20%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQV-----EQERGITVKAQTAS 83
N I HVDHGK+TL + VL+ G +Q D + E+ERGIT+ TA
Sbjct: 14 NIGTIGHVDHGKTTLTAAI----TKVLAERGLNQAKDYDSIDAAPEEKERGITI--NTAH 67
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDF-SNEVTRSLAACQ--GVVLLIDA 128
+ Y + + Y +D PGH D+ N +T A Q G +L++ A
Sbjct: 68 VEYET--EKRHYA--HVDCPGHADYVKNMIT---GAAQMDGAILVVAA 108
|
Length = 394 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 47/141 (33%)
Query: 32 SIIAHVDHGKSTLADRLLEMTGTVLSSGS-SQVLDSLQVEQERGITVKAQTASLRYTSIL 90
+I+ HVDHGK++L D + + +G +Q + + VE E G +
Sbjct: 91 TIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMI------------- 137
Query: 91 DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA---------------------- 128
+DTPGH F++ R VVL++ A
Sbjct: 138 -------TFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPI 190
Query: 129 ----NQVDLKNANPEACEEQL 145
N++D ANP+ +++L
Sbjct: 191 IVAINKIDKPEANPDRVKQEL 211
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|215907 pfam00412, LIM, LIM domain | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 3e-04
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 160 WHRRCFSCADCHRSLDSTN 178
WH CF CA C + L +
Sbjct: 22 WHPECFRCAVCGKPLGPGD 40
|
This family represents two copies of the LIM structural domain. Length = 58 |
| >gnl|CDD|188871 cd09840, LIM2_CRP2, The second LIM domain of Cysteine Rich Protein 2 (CRP2) | Back alignment and domain information |
|---|
Score = 37.4 bits (86), Expect = 3e-04
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 160 WHRRCFSCADCHRSLDSTNLND 181
WH+ CF CA C +SL+ST L +
Sbjct: 21 WHKNCFRCAKCGKSLESTTLTE 42
|
The second LIM domain of Cysteine Rich Protein 2 (CRP2): Cysteine-rich proteins (CRPs) are characterized by the presence of two LIM domains linked to short glycine-rich repeats (GRRs). The CRP family members include CRP1, CRP2, CRP3/MLP and TLPCRP1, CRP2 and CRP3 share a conserved nuclear targeting signal (K/R-K/R-Y-G-P-K), which supports the fact that these proteins function not only in the cytoplasm but also in the nucleus. CRPs control regulatory pathways during cellular differentiation, and involve in complex transcription circuits, and the organization as well as the arrangement of the myofibrillar/cytoskeletal network.CRP3 also called Muscle LIM Protein (MLP), which is a striated muscle-specific factor that enhances myogenic differentiation. The second LIM domain of CRP3/MLP interacts with cytoskeletal protein beta-spectrin. CRP3/MLP also interacts with the basic helix-loop-helix myogenic transcription factors MyoD, myogenin, and MRF4 thereby increasing their affinity for specific DNA regulatory elements. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 54 |
| >gnl|CDD|177010 CHL00071, tufA, elongation factor Tu | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 16/105 (15%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV------LDSLQVEQERGITVKAQTAS 83
N I HVDHGK+TL + L++ +DS E+ RGIT+ TA
Sbjct: 14 NIGTIGHVDHGKTTLTAAI----TMTLAAKGGAKAKKYDEIDSAPEEKARGITIN--TAH 67
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + + Y +D PGH D+ + A G +L++ A
Sbjct: 68 VEYET--ENRHY--AHVDCPGHADYVKNMITGAAQMDGAILVVSA 108
|
Length = 409 |
| >gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLL--------------EMTGTVLSSGS---SQVLDSLQVEQE 245
N +I HVD GKST L+ E + GS + VLD L+ E+E
Sbjct: 9 NLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 68
Query: 246 RGITV 250
RGIT+
Sbjct: 69 RGITI 73
|
Length = 446 |
| >gnl|CDD|214528 smart00132, LIM, Zinc-binding domain present in Lin-11, Isl-1, Mec-3 | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 9e-04
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 158 RIWHRRCFSCADCHRSLDSTN 178
++WH CF CA C + L
Sbjct: 21 KVWHPECFKCATCGKPLSGDT 41
|
Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways. Length = 54 |
| >gnl|CDD|188785 cd09401, LIM_TLP_like, The LIM domains of thymus LIM protein (TLP) | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 9e-04
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 149 FNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKP 186
F K S+ R WH+ C C C ++L ++ KP
Sbjct: 10 FAEKKTSLGRDWHKPCLRCEKCKKTLTPGQHSEHEGKP 47
|
The LIM domain of thymus LIM protein (TLP) like proteins: This family includes the LIM domains of TLP and CRIP (Cysteine-Rich Intestinal Protein). TLP is the distant member of the CRP family of proteins. TLP has two isomers (TLP-A and TLP-B) and sharing approximately 30% with each of the three other CRPs. Like CRP1, CRP2 and CRP3/MLP, TLP has two LIM domains, connected by a flexible linker region. Unlike the CRPs, TLP lacks the nuclear targeting signal (K/R-K/R-Y-G-P-K) and is localized solely in the cytoplasm. TLP is specifically expressed in the thymus in a subset of cortical epithelial cells. TLP has a role in development of normal thymus and in controlling the development and differentiation of thymic epithelial cells. CRIP is a short LIM protein with only one LIM domain. CRIP gene is developmentally regulated and can be induced by glucocorticoid hormones during the first three postnatal weeks. The domain shows close sequence homology to LIM domain of thymus LIM protein. However, unlike the TLP proteins which have two LIM domains, the members of this family have only one LIM domain. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 53 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 11/42 (26%)
Query: 209 HVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITV 250
H+DHGK+TL L + D L E++RGIT+
Sbjct: 7 HIDHGKTTLIKALTGIET-----------DRLPEEKKRGITI 37
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 19/61 (31%)
Query: 209 HVDHGKSTLADRLLEMTGTV-------LSSGSSQ------------VLDSLQVEQERGIT 249
VD GKSTL RLL T + L S + ++D L+ E+E+GIT
Sbjct: 14 SVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGIT 73
Query: 250 V 250
+
Sbjct: 74 I 74
|
Length = 431 |
| >gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQV-----EQERGITV 250
N I HVDHGK+TL + T + G ++ Q+ E+ RGIT+
Sbjct: 14 NVGTIGHVDHGKTTLTAAI---TTVLAKKGGAEAKAYDQIDNAPEEKARGITI 63
|
Length = 394 |
| >gnl|CDD|188831 cd09447, LIM_LASP, The LIM domain of LIM and SH3 Protein (LASP) | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 141 CEEQLQTLFNIDKKSVL-RIWHRRCFSCADCHRSLDSTN 178
C +T++ +K + L +IWH+ CF C C +L+ N
Sbjct: 1 CARCGKTVYPTEKLNCLDKIWHKGCFKCEVCGMTLNMKN 39
|
The LIM domain of LIM and SH3 Protein (LASP): LASP family contains two highly homologous members, LASP-1 and LASP-2. LASP contains a LIM motif at its amino terminus, a src homology 3 (SH3) domains at its C-terminal part, and a nebulin-like region in the middle. LASP-1 and -2 are highly conserved in their LIM, nebulin-like, and SH3 domains ,but differ significantly at their linker regions. Both proteins are ubiquitously expressed and involved in cytoskeletal architecture, especially in the organization of focal adhesions. LASP-1 and LASP-2, are important during early embryo- and fetogenesis and are highly expressed in the central nervous system of the adult. However, only LASP-1 seems to participate significantly in neuronal differentiation and plays an important functional role in migration and proliferation of certain cancer cells while the role of LASP-2 is more structural. The expression of LASP-1 in breast tumors is increased significantly. As in other LIM domains, this domain family is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein. Length = 53 |
| >gnl|CDD|227582 COG5257, GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 31/121 (25%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK---AQT----- 81
N ++ HVDHGK+TL L +G S E +RGIT+K A
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---SGVWTDRHSE--------ELKRGITIKLGYADAKIYKC 60
Query: 82 ----ASLRYTS-----ILDGEEYLL---NLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
YT+ E L+ + +D PGH + A G +L+I AN
Sbjct: 61 PECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAAN 120
Query: 130 Q 130
+
Sbjct: 121 E 121
|
Length = 415 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 206 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSL--QVEQERGITVKAQ 253
I+ + GKSTL +RLL ++ + V +E G T K
Sbjct: 6 IVGDPNVGKSTLLNRLLGNKISITEYK-PGTTRNYVTTVIEEDGKTYKFN 54
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITV 250
N ++ HVD GK++LA LS S+ D QERGIT+
Sbjct: 2 NVGLLGHVDSGKTSLA--------KALSEIASTAAFDKNPQSQERGITL 42
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|188752 cd09366, LIM1_Isl, The first LIM domain of Isl, a member of LHX protein family | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 151 IDKKSVLRI-----WHRRCFSCADCHRSLDST 177
I + +LR+ WH C CA+C + LD T
Sbjct: 8 IHDQYILRVAPDLEWHAACLKCAECGQYLDET 39
|
The first LIM domain of Isl: Isl is a member of LHX protein family, which features two tandem N-terminal LIM domains and a C-terminal DNA binding homeodomain. Isl1 and Isl2 are the two conserved members of this family. Proteins in this group are found in the nucleus and act as transcription factors or cofactors. LHX proteins are critical for the development of specialized cells in multiple tissue types, including the nervous system, skeletal muscle, the heart, the kidneys, and endocrine organs, such as the pituitary gland and the pancreas. Isl-1 is one of the LHX proteins isolated originally by virtue of its ability to bind DNA sequences from the 5'-flanking region of the rat insulin gene in pancreatic insulin-producing cells. Mice deficient in Isl-1 fail to form the dorsal exocrine pancreas and islet cells fail to differentiate. On the other hand, Isl-1 takes part in the pituitary development by activating the gonadotropin-releasing hormone receptor gene together with LHX3 and steroidogenic factor 1. Mouse Is l2 is expressed in the retinal ganglion cells and the developing spinal cord where it plays a role in motor neuron development. Same as Isl1, Isl2 may also be able to bind to the insulin gene enhancer to promote gene activation. All LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 55 |
| >gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 43/127 (33%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK---AQTASLRY 86
N ++ HVDHGK+TL L TG S E +RGIT++ A A++R
Sbjct: 11 NIGMVGHVDHGKTTLVQAL---TGVWTDRHSE--------ELKRGITIRLGYAD-ATIRK 58
Query: 87 TSILDGEEYL------------------LNLIDTPGHVDFSNEV---TR-SLAAC-QGVV 123
+ E ++ +D PGH E T S AA G +
Sbjct: 59 CPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGH-----ETLMATMLSGAALMDGAI 113
Query: 124 LLIDANQ 130
L+I AN+
Sbjct: 114 LVIAANE 120
|
Length = 411 |
| >gnl|CDD|188729 cd09343, LIM1_FHL, The first LIM domain of Four and a half LIM domains protein (FHL) | Back alignment and domain information |
|---|
Score = 34.7 bits (80), Expect = 0.003
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 136 ANPEACEEQLQTLFNIDKKSVL---RIWHRRCFSCADCHRSL 174
AN CEE + D K + R WH CF C C RSL
Sbjct: 2 ANT--CEE-CKKKIGCDSKDLSYKDRHWHEGCFKCFKCQRSL 40
|
The first LIM domain of Four and a half LIM domains protein (FHL): LIM-only protein family consists of five members, designated FHL1, FHL2, FHL3, FHL5 and LIMPETin. The first four members are composed of four complete LIM domains arranged in tandem and an N-terminal single zinc finger domain with a consensus sequence equivalent to the C-terminal half of a LIM domain. LIMPETin is an exception, containing six LIM domains. FHL1, 2 and 3 are predominantly expressed in muscle tissues, and FHL5 is highly expressed in male germ cells. FHL proteins exert their roles as transcription co-activators or co-repressors through a wide array of interaction partners. For example, FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. FHL2 has shown to interact with more than 50 different proteins, including receptors, structural proteins, transcription factors and cofactors, signal transducers, splicing factors, DNA replication and repair enzymes, and metabolic enzymes. FHL3 int eracts with many transcription factors, such as CREB, BKLF/KLF3, CtBP2, MyoD, and MZF_1. FHL5 is a tissue-specific coactivator of CREB/CREM family transcription factors. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes. Length = 59 |
| >gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 35/87 (40%)
Query: 33 IIA---HVDHGKSTL--------ADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQT 81
IIA HVDHGK+TL ADRL E E++RG+T+
Sbjct: 2 IIATAGHVDHGKTTLLQAITGVNADRLPE-------------------EKKRGMTIDLGY 42
Query: 82 ASLRYTSILDGEEYLLNLIDTPGHVDF 108
A Y DG +L ID PGH F
Sbjct: 43 A---YWPQPDGR--VLGFIDVPGHEKF 64
|
Length = 614 |
| >gnl|CDD|188779 cd09393, LIM3_Lrg1p_like, The third LIM domain of Lrg1p, a LIM and RhoGap domain containing protein | Back alignment and domain information |
|---|
Score = 34.2 bits (79), Expect = 0.004
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 160 WHRRCFSCADCHRSLDSTNLND 181
WH +CF+C+ CHR + S +
Sbjct: 20 WHLKCFTCSRCHREISSELSDA 41
|
The third LIM domain of Lrg1p, a LIM and RhoGap domain containing protein: The members of this family contain three tandem repeats of LIM domains and a Rho-type GTPase activating protein (RhoGap) domain. Lrg1p is a Rho1 GTPase-activating protein required for efficient cell fusion in yeast. Lrg1p-GAP domain strongly and specifically stimulates the GTPase activity of Rho1p, a regulator of beta (1-3)-glucan synthase in vitro. The LIM domain is 50-60 amino acids in size and shares two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein. Length = 56 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.97 | |
| KOG0462|consensus | 650 | 99.96 | ||
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.94 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.94 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.94 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.94 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.93 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.93 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.93 | |
| KOG0458|consensus | 603 | 99.93 | ||
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.93 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.93 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.92 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.92 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.92 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.91 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.91 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.91 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.91 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.9 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.9 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.9 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.9 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.9 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.89 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.89 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.89 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.89 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.89 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.89 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.88 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.88 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.87 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.87 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.87 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.87 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.86 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.86 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.85 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.85 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.85 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.84 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.84 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.84 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.84 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.84 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.84 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.83 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.83 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.83 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.83 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.82 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.82 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.82 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.82 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.82 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.82 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.82 | |
| KOG1145|consensus | 683 | 99.81 | ||
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.81 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.8 | |
| KOG0459|consensus | 501 | 99.8 | ||
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.8 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.8 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.8 | |
| KOG0460|consensus | 449 | 99.79 | ||
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.78 | |
| KOG0461|consensus | 522 | 99.78 | ||
| KOG0092|consensus | 200 | 99.78 | ||
| KOG0084|consensus | 205 | 99.78 | ||
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.77 | |
| KOG0394|consensus | 210 | 99.77 | ||
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.77 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.77 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.77 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.76 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.75 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.75 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.75 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.75 | |
| KOG0094|consensus | 221 | 99.74 | ||
| PRK15494 | 339 | era GTPase Era; Provisional | 99.74 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.74 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.74 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.74 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.73 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.73 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.73 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.73 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.73 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.72 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.72 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.72 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.72 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.72 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.72 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.72 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.72 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.72 | |
| KOG0078|consensus | 207 | 99.72 | ||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.72 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.72 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.72 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.72 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.72 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.71 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.71 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.71 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.71 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.71 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.71 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.71 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.71 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.7 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.7 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.7 | |
| KOG0463|consensus | 641 | 99.7 | ||
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.7 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.7 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.7 | |
| KOG0098|consensus | 216 | 99.7 | ||
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.69 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.69 | |
| KOG0080|consensus | 209 | 99.69 | ||
| PLN03118 | 211 | Rab family protein; Provisional | 99.69 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.69 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.69 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.69 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.69 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.69 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.69 | |
| KOG0464|consensus | 753 | 99.69 | ||
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.68 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.68 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.68 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.68 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.68 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.68 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.68 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.68 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.68 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.68 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.68 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.68 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.68 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.68 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.68 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.68 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.67 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.67 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.67 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.67 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.67 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.67 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.67 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.67 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.66 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.66 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.66 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.66 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.66 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.66 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.66 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.66 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.66 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.66 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.66 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.65 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.65 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.65 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.65 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.65 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.65 | |
| KOG1423|consensus | 379 | 99.64 | ||
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.64 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.64 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.64 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.64 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.64 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.64 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.64 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.64 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.64 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.63 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.63 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.63 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.63 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.63 | |
| KOG0095|consensus | 213 | 99.63 | ||
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.63 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.63 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.63 | |
| KOG0086|consensus | 214 | 99.63 | ||
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.63 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.62 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.62 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.62 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.62 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.62 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.62 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.62 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.61 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.61 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.61 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.61 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.61 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.61 | |
| KOG0465|consensus | 721 | 99.61 | ||
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.6 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.6 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.6 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.6 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.6 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.6 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.6 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.59 | |
| KOG0087|consensus | 222 | 99.59 | ||
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.59 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.58 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.58 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.57 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.57 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.57 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.57 | |
| KOG0091|consensus | 213 | 99.56 | ||
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.56 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.56 | |
| KOG0466|consensus | 466 | 99.56 | ||
| PRK11058 | 426 | GTPase HflX; Provisional | 99.56 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.56 | |
| KOG0073|consensus | 185 | 99.55 | ||
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.55 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.54 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.54 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.52 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.52 | |
| KOG0097|consensus | 215 | 99.52 | ||
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.51 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.51 | |
| KOG0093|consensus | 193 | 99.5 | ||
| KOG0467|consensus | 887 | 99.5 | ||
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.5 | |
| KOG0079|consensus | 198 | 99.5 | ||
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.49 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.49 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.49 | |
| KOG0088|consensus | 218 | 99.49 | ||
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.47 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.47 | |
| KOG1191|consensus | 531 | 99.44 | ||
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.43 | |
| KOG1143|consensus | 591 | 99.42 | ||
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.4 | |
| KOG0468|consensus | 971 | 99.4 | ||
| KOG1489|consensus | 366 | 99.39 | ||
| KOG0083|consensus | 192 | 99.37 | ||
| KOG0070|consensus | 181 | 99.37 | ||
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.36 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.35 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.34 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.32 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.31 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.29 | |
| KOG0469|consensus | 842 | 99.29 | ||
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.27 | |
| KOG1144|consensus | 1064 | 99.27 | ||
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.27 | |
| KOG0075|consensus | 186 | 99.26 | ||
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.26 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.26 | |
| KOG0076|consensus | 197 | 99.25 | ||
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.25 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.23 | |
| KOG0395|consensus | 196 | 99.22 | ||
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.2 | |
| KOG0081|consensus | 219 | 99.2 | ||
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.16 | |
| KOG0071|consensus | 180 | 99.16 | ||
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.13 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.12 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.1 | |
| KOG0072|consensus | 182 | 99.09 | ||
| PTZ00099 | 176 | rab6; Provisional | 99.09 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.08 | |
| KOG0074|consensus | 185 | 99.08 | ||
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.07 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.06 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.04 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.03 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.99 | |
| KOG4252|consensus | 246 | 98.99 | ||
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 98.98 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 98.97 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 98.97 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 98.96 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.96 | |
| KOG0393|consensus | 198 | 98.92 | ||
| KOG0410|consensus | 410 | 98.91 | ||
| KOG1673|consensus | 205 | 98.9 | ||
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.83 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.83 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.8 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.79 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.78 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.78 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 98.76 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.75 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.72 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.71 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.71 | |
| KOG0462|consensus | 650 | 98.69 | ||
| KOG0090|consensus | 238 | 98.69 | ||
| KOG1532|consensus | 366 | 98.68 | ||
| KOG0077|consensus | 193 | 98.68 | ||
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.67 | |
| KOG2486|consensus | 320 | 98.65 | ||
| KOG0052|consensus | 391 | 98.61 | ||
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.61 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.6 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.59 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.59 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.55 | |
| PRK13768 | 253 | GTPase; Provisional | 98.54 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 98.54 | |
| KOG1486|consensus | 364 | 98.53 | ||
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.53 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.52 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.5 | |
| KOG1490|consensus | 620 | 98.48 | ||
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.47 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.47 | |
| KOG3886|consensus | 295 | 98.47 | ||
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 98.47 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.47 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.44 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.42 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.42 | |
| KOG3883|consensus | 198 | 98.4 | ||
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.4 | |
| KOG1547|consensus | 336 | 98.4 | ||
| KOG4423|consensus | 229 | 98.39 | ||
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.39 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.36 | |
| KOG0467|consensus | 887 | 98.36 | ||
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.36 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 98.35 | |
| KOG0096|consensus | 216 | 98.35 | ||
| KOG1491|consensus | 391 | 98.33 | ||
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.31 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.31 | |
| KOG0464|consensus | 753 | 98.29 | ||
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.29 | |
| KOG0469|consensus | 842 | 98.28 | ||
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.27 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.27 | |
| KOG1707|consensus | 625 | 98.26 | ||
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.22 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.22 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.21 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.17 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 98.15 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.12 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.11 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.1 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 98.09 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 98.09 | |
| KOG2655|consensus | 366 | 98.09 | ||
| KOG1487|consensus | 358 | 98.07 | ||
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.06 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 98.06 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 98.06 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.05 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 98.05 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.04 | |
| KOG1424|consensus | 562 | 98.03 | ||
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.02 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 98.02 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.02 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.02 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 98.02 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 98.02 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 97.99 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.98 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.97 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 97.96 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.95 | |
| KOG2485|consensus | 335 | 97.92 | ||
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.88 | |
| KOG0465|consensus | 721 | 97.87 | ||
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 97.84 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 97.83 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.81 | |
| KOG1954|consensus | 532 | 97.81 | ||
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 97.8 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 97.78 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 97.78 | |
| KOG0448|consensus | 749 | 97.75 | ||
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 97.73 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.7 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.65 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 97.65 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 97.64 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.64 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.63 | |
| KOG0458|consensus | 603 | 97.62 | ||
| KOG2484|consensus | 435 | 97.6 | ||
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.57 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 97.57 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 97.56 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 97.56 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.56 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.5 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 97.5 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.41 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 97.41 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.39 | |
| KOG2423|consensus | 572 | 97.37 | ||
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.37 | |
| CHL00071 | 409 | tufA elongation factor Tu | 97.37 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 97.34 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.3 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.28 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 97.24 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 97.23 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 97.22 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.2 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.17 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.14 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 97.11 | |
| KOG1534|consensus | 273 | 97.1 | ||
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.08 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 97.07 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.05 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.0 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 96.97 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 96.96 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 96.96 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 96.95 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 96.92 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 96.88 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 96.86 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.85 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 96.83 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 96.82 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.82 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 96.75 | |
| KOG3905|consensus | 473 | 96.72 | ||
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 96.72 | |
| KOG0082|consensus | 354 | 96.71 | ||
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.71 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 96.7 | |
| KOG3859|consensus | 406 | 96.7 | ||
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.7 | |
| KOG1533|consensus | 290 | 96.65 | ||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 96.65 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 96.65 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 96.64 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.59 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 96.58 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 96.58 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.56 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 96.56 | |
| KOG0460|consensus | 449 | 96.48 | ||
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 96.48 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 96.48 | |
| KOG4181|consensus | 491 | 96.44 | ||
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 96.4 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 96.39 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 96.37 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 96.37 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.35 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 96.35 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 96.34 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 96.32 | |
| KOG3887|consensus | 347 | 96.32 | ||
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 96.27 | |
| PRK06217 | 183 | hypothetical protein; Validated | 96.26 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 96.24 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 96.21 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 96.17 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.16 | |
| PRK14495 | 452 | putative molybdopterin-guanine dinucleotide biosyn | 96.15 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 96.15 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 96.13 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 96.1 | |
| KOG0447|consensus | 980 | 96.09 | ||
| PRK13949 | 169 | shikimate kinase; Provisional | 96.09 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 96.08 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 96.07 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 96.06 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 96.06 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 96.06 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 96.06 | |
| KOG0459|consensus | 501 | 96.04 | ||
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 96.04 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 96.03 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 96.02 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 96.0 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 95.99 | |
| PLN02459 | 261 | probable adenylate kinase | 95.97 |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=217.50 Aligned_cols=193 Identities=23% Similarity=0.328 Sum_probs=158.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
....+++++||+++|||||+++|++..|.+... .++|++|..++||++|+|++.....++.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 456789999999999999999999999998764 578999999999999999999998888776
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++++|||||.+|.++++.++++||++||||||.. ||..
T Consensus 85 ------~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v 158 (428)
T COG5256 85 ------YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLV 158 (428)
T ss_pred ------ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccccc
Confidence 889999999999999999999999999999999998 8888
Q ss_pred CCC---HHHHHHHHHH---HhCCC--ccceEEecccccccccccccccCCCcccCCC---------CCCCCCCCCCCCcc
Q psy12244 135 NAN---PEACEEQLQT---LFNID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDGL---------AKPDSKATPYEDIP 197 (257)
Q Consensus 135 ~~~---~~~~~~~~~~---~~~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~---------~~~~~~~~~~~~~~ 197 (257)
+++ ++++..++.. .+|+. ..+|+|+||..|+|+.+.- ...+||++. ..|.+....+..+|
T Consensus 159 ~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s---~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~p 235 (428)
T COG5256 159 SWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS---ENMPWYKGPTLLEALDQLEPPERPLDKPLRLP 235 (428)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC---cCCcCccCChHHHHHhccCCCCCCCCCCeEeE
Confidence 776 4455555544 33665 3679999999999998766 366899873 24555566667788
Q ss_pred hhhhc-----ceeeEeeecccchhhHHHHHHhhCC
Q psy12244 198 IARIR-----NFSIIAHVDHGKSTLADRLLEMTGT 227 (257)
Q Consensus 198 ~~~~~-----~~~~~G~v~~Gk~~~~~~i~~~~g~ 227 (257)
+.+.. +.+.+|++.+|....++.+...++.
T Consensus 236 I~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~ 270 (428)
T COG5256 236 IQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAG 270 (428)
T ss_pred eeeEEEecCCceEEEEEEeeeeeccCCEEEEecCc
Confidence 77654 4556788999988888887766653
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-30 Score=221.12 Aligned_cols=197 Identities=48% Similarity=0.715 Sum_probs=169.7
Q ss_pred CCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 19 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 19 ~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
++...|.++.+|++|+-|+++|||||..+|+..++.+... ...+++|.+..|+++|+|+..+++.+.|+. +..+.+
T Consensus 51 ~~~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~---~~~ylL 127 (650)
T KOG0462|consen 51 EFSLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD---GQSYLL 127 (650)
T ss_pred ccccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc---CCceEE
Confidence 5667788999999999999999999999999999987765 567789999999999999999999999985 677999
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
++||||||.||..+..+.+..+|++||||||+. +|++.++.+++..++.+.|+.
T Consensus 128 NLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~ 207 (650)
T KOG0462|consen 128 NLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDI 207 (650)
T ss_pred EeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998 999999999999999999999
Q ss_pred CccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHHHH
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
+..+++.+|||+|.|+++++++|. +.+|+|......++++- -+..++....+.+-.|...-++.+..
T Consensus 208 ~~~~~i~vSAK~G~~v~~lL~AII-----~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~ 279 (650)
T KOG0462|consen 208 PPAEVIYVSAKTGLNVEELLEAII-----RRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQS 279 (650)
T ss_pred CccceEEEEeccCccHHHHHHHHH-----hhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEE
Confidence 988999999999999999998887 34455554444443332 24457788888888887777776643
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-27 Score=204.64 Aligned_cols=195 Identities=42% Similarity=0.677 Sum_probs=159.8
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
..++.++++|..|+.|.++|||||..+|+..++.+... ...+++|....|++||+|++.+...+.|+.- +++.|.++|
T Consensus 2 ~~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~-~g~~Y~lnl 80 (603)
T COG0481 2 TFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAK-DGETYVLNL 80 (603)
T ss_pred CccchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeC-CCCEEEEEE
Confidence 35667889999999999999999999999999988766 5677899999999999999999999998752 568899999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
||||||.||..+..+++..|.+++|||||+. +|++.++.+++.+++.+.+|.+.
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999998 99999999999999999999998
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCC-c-c---hhhhcceeeEeeecccchhhHHHH
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYED-I-P---IARIRNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~G~v~~Gk~~~~~~i 221 (257)
...+.+|||+|.||+++++.|.. .+|.|......+.. + . -+.-++++..=++-.|....++.+
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~-----~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki 228 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVE-----KIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKI 228 (603)
T ss_pred chheeEecccCCCHHHHHHHHHh-----hCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEE
Confidence 88999999999999999998873 33334333222211 1 1 122356655555555655555554
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-27 Score=193.79 Aligned_cols=150 Identities=23% Similarity=0.319 Sum_probs=124.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------------CCcccccchHHHhhhCceEeceeeEEEe
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------------GSSQVLDSLQVEQERGITVKAQTASLRY 86 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 86 (257)
..+.+++.||+++-|||||+++|++.+..+... +++...|.++.|+++|+|++..+..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 346789999999999999999999887776433 6778899999999999999998888876
Q ss_pred ecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCCH-
Q psy12244 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNANP- 138 (257)
Q Consensus 87 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~~- 138 (257)
.. .+|.+.|||||+.|.++|..+++.||++|++|||.. ||+.+++.
T Consensus 84 ~K------RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 84 EK------RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cc------ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHH
Confidence 65 899999999999999999999999999999999998 99988763
Q ss_pred --HHHHHH---HHHHhCCCccceEEecccccccccccccccCCCcccCCCC
Q psy12244 139 --EACEEQ---LQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLA 184 (257)
Q Consensus 139 --~~~~~~---~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~ 184 (257)
+++.++ +.+.++.....++|+||..|+|+..-.+ .+|||++..
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~---~mpWY~Gpt 205 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSE---NMPWYKGPT 205 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccccccc---CCCcccCcc
Confidence 333333 3333466666799999999999977543 567999843
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=204.66 Aligned_cols=192 Identities=26% Similarity=0.409 Sum_probs=149.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
.+..+|+++||+|+|||||+++|++..+.+... .++|++|..++|+++|+|++.....+.++.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 457899999999999999999999988877532 356789999999999999999888887766
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN-- 137 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~-- 137 (257)
+.++|||||||++|..++..+++.+|++++|+|+++ +|+...+
T Consensus 84 ------~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 157 (425)
T PRK12317 84 ------YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEK 157 (425)
T ss_pred ------eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHH
Confidence 899999999999999999999999999999999974 6765432
Q ss_pred -HHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCCcchhhh-
Q psy12244 138 -PEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYEDIPIARI- 201 (257)
Q Consensus 138 -~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~- 201 (257)
++...+++.+++ ++. ..+++++||++|+|++++.+. ++||++ ++.|.+....+..+++++.
T Consensus 158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~---~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~ 234 (425)
T PRK12317 158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSEN---MPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVY 234 (425)
T ss_pred HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccC---CCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEE
Confidence 233444555443 432 357999999999999988764 457764 2334444445556776654
Q ss_pred ----cceeeEeeecccchhhHHHHHHhhC
Q psy12244 202 ----RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 202 ----~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
.+.++.|++.+|....++.+...++
T Consensus 235 ~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~ 263 (425)
T PRK12317 235 SISGVGTVPVGRVETGVLKVGDKVVFMPA 263 (425)
T ss_pred eeCCCeEEEEEEEeeccEecCCEEEECCC
Confidence 3557789999999999988876653
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=200.10 Aligned_cols=189 Identities=20% Similarity=0.234 Sum_probs=147.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
+.|+|+|++|+|||||+|+|+++..++... .+|+|.+..+...+|.+ ..|.+|||+|.++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D-------------~pGvTRDr~y~~~~~~~------~~f~lIDTgGl~~~ 64 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD-------------TPGVTRDRIYGDAEWLG------REFILIDTGGLDDG 64 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeec-------------CCCCccCCccceeEEcC------ceEEEEECCCCCcC
Confidence 579999999999999999999988877654 78999999999999988 7899999999874
Q ss_pred --------cHHHHHHhhhhcceEEEEEecCc-----------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 108 --------FSNEVTRSLAACQGVVLLIDANQ-----------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 108 --------~~~~~~~~~~~aD~~ilVvd~~~-----------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
...++..++..||++|||||+.. +++.+. ....+...+++++...++
T Consensus 65 ~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~--~~~e~~~~efyslG~g~~ 142 (444)
T COG1160 65 DEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDN--LKAEELAYEFYSLGFGEP 142 (444)
T ss_pred CchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccC--chhhhhHHHHHhcCCCCc
Confidence 33456678899999999999998 233222 133444555555555578
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCccc
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV 236 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~~ 236 (257)
++|||.+|.|+.+|.+.+.... +.+...... . ..+...++++|+++.||+++.++|+...+.+...-++++
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l-----~~~e~~~~~-~---~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTT 213 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELL-----PPDEEEEEE-E---ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTT 213 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhc-----CCccccccc-c---cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCcc
Confidence 9999999999999999887431 101100000 0 023467999999999999999999999999998888999
Q ss_pred cCChhhHhhhC
Q psy12244 237 LDSLQVEQERG 247 (257)
Q Consensus 237 ~d~~~~e~~rg 247 (257)
.|.+..+.+++
T Consensus 214 RD~I~~~~e~~ 224 (444)
T COG1160 214 RDSIDIEFERD 224 (444)
T ss_pred ccceeeeEEEC
Confidence 99999888754
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-26 Score=202.26 Aligned_cols=191 Identities=23% Similarity=0.307 Sum_probs=149.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
.+..||+++||+++|||||+++|++..+.+... .++|++|..++|+++|+|++.....+.+..
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 456889999999999999999999988765432 236789999999999999998877777665
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++|+|||||++|..++..+++.+|++|+|+|+.. ||+.
T Consensus 85 ------~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 ------YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred ------EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 899999999999999999999999999999999973 7765
Q ss_pred C-----CCHHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCC
Q psy12244 135 N-----ANPEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYED 195 (257)
Q Consensus 135 ~-----~~~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~ 195 (257)
. .+++++.++++.++ ++. ..+++|+||++|+|+.+..+. ++||++ ++.|.+....+..
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~---~~Wy~g~tLl~~l~~i~~p~~~~~~plr 235 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTN---LDWYKGPTLLEALDQINEPKRPSDKPLR 235 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccC---CcccchHHHHHHHhhcCCCccccCCCcE
Confidence 2 23556677777665 432 367999999999999765443 457654 3344444455667
Q ss_pred cchhhhc-----ceeeEeeecccchhhHHHHHHhh
Q psy12244 196 IPIARIR-----NFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 196 ~~~~~~~-----~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++++.. +.++.|++.+|....++.+...+
T Consensus 236 ~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P 270 (447)
T PLN00043 236 LPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGP 270 (447)
T ss_pred EEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcC
Confidence 7776643 45678999999988888876655
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-26 Score=201.09 Aligned_cols=192 Identities=21% Similarity=0.304 Sum_probs=150.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
.+..||+++||+++|||||+++|++..+.+... ++++++|..++|+++|+|++.....+.++.
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 456799999999999999999999988776532 345789999999999999999887777766
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++|+|||||.+|..++..++..+|++++|||+.. ||..
T Consensus 85 ------~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 85 ------YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDK 158 (446)
T ss_pred ------eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 899999999999999999999999999999999963 7742
Q ss_pred C-----CCHHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCC
Q psy12244 135 N-----ANPEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYED 195 (257)
Q Consensus 135 ~-----~~~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~ 195 (257)
. .+++++.++++..+ ++. ..|+||+||++|+|+.+..+ .++||++ ++.|.+....+..
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~---~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r 235 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSD---NMPWYKGPTLLEALDTLEPPKRPVDKPLR 235 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCC---CCcccchHHHHHHHhCCCCCCcCCCCCeE
Confidence 2 33667777777765 342 46899999999999986543 3457655 2234444445566
Q ss_pred cchhhhc-----ceeeEeeecccchhhHHHHHHhhC
Q psy12244 196 IPIARIR-----NFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 196 ~~~~~~~-----~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
+++++.. +.++.|++.+|....++.+...+.
T Consensus 236 ~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~ 271 (446)
T PTZ00141 236 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPS 271 (446)
T ss_pred EEEEEEEecCCceEEEEEEEEcceEecCCEEEEccC
Confidence 7776643 456789999999999988877664
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=198.74 Aligned_cols=189 Identities=20% Similarity=0.301 Sum_probs=144.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccC-------------------CCcccccchHHHhhhCceEeceeeEEEeecc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------------GSSQVLDSLQVEQERGITVKAQTASLRYTSI 89 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~ 89 (257)
.+|+++||+|+|||||+++|++..+.+... .++|++|..++|+++|+|++.....+.++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 369999999999999999999988877541 235789999999999999999888887766
Q ss_pred cCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCCH---H
Q psy12244 90 LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNANP---E 139 (257)
Q Consensus 90 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~~---~ 139 (257)
.+++|||||||++|..++..++..+|++++|+|+.. +|+..++. +
T Consensus 80 -----~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~ 154 (406)
T TIGR02034 80 -----RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFE 154 (406)
T ss_pred -----eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHH
Confidence 789999999999999999999999999999999975 77754332 2
Q ss_pred HHHHHHHHH---hCCCccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCCcchhhhc-----
Q psy12244 140 ACEEQLQTL---FNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYEDIPIARIR----- 202 (257)
Q Consensus 140 ~~~~~~~~~---~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~----- 202 (257)
+..+++..+ +++...+++|+||++|+|++++.+. ++||++ ++.+.+....+..+++.+..
T Consensus 155 ~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~---~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~ 231 (406)
T TIGR02034 155 NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSES---MPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLD 231 (406)
T ss_pred HHHHHHHHHHHHcCCCCccEEEeecccCCCCcccccC---CCccchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCC
Confidence 334444433 3555568999999999999987653 357654 22333334445567665432
Q ss_pred ceeeEeeecccchhhHHHHHHhhC
Q psy12244 203 NFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 203 ~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
...+.|++.+|....++.+...++
T Consensus 232 ~~g~~G~v~~G~l~~gd~v~i~P~ 255 (406)
T TIGR02034 232 FRGYAGTIASGSVHVGDEVVVLPS 255 (406)
T ss_pred cEEEEEEEecceeecCCEEEEeCC
Confidence 123579999999999988876553
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-26 Score=198.01 Aligned_cols=198 Identities=25% Similarity=0.336 Sum_probs=156.4
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLR 85 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~ 85 (257)
.+.....+++++||+++|||||+++|++..+.+... .++|++|...+||++|+|++.....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 334467789999999999999999999999888655 689999999999999999999998887
Q ss_pred eecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------c
Q psy12244 86 YTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------V 131 (257)
Q Consensus 86 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~ 131 (257)
-+. +.++|+|+|||.+|..+++.++..||+++||||++. |
T Consensus 252 s~~------~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKm 325 (603)
T KOG0458|consen 252 SKS------KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKM 325 (603)
T ss_pred cCc------eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecc
Confidence 554 899999999999999999999999999999999998 7
Q ss_pred CCCCCC---HHHHHHHHHHHh----CCCc--cceEEecccccccccccccccCCCcccCCCC---------CCCCCCCCC
Q psy12244 132 DLKNAN---PEACEEQLQTLF----NIDK--KSVLRIWHRRCFSCADCHRSLDSTNLNDGLA---------KPDSKATPY 193 (257)
Q Consensus 132 D~~~~~---~~~~~~~~~~~~----~~~~--~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~---------~~~~~~~~~ 193 (257)
|+.+++ ++++...+..+| |+.. ..|+|||+.+|+|+...-+.=....||++.+ .|.+....+
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kP 405 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKP 405 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCC
Confidence 887765 566666666665 4433 3699999999999977643323446888753 333334445
Q ss_pred CCcchhhh-----cceeeEeeecccchhhHHHHHHhhC
Q psy12244 194 EDIPIARI-----RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 194 ~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
..+++.+. .++.+.|.+++|....++.+...++
T Consensus 406 l~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s 443 (603)
T KOG0458|consen 406 LRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTS 443 (603)
T ss_pred eEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecC
Confidence 55555443 3467889999998888777755443
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=201.43 Aligned_cols=192 Identities=22% Similarity=0.278 Sum_probs=145.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------------CCcccccchHHHhhhCceEeceeeEEEe
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------------GSSQVLDSLQVEQERGITVKAQTASLRY 86 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 86 (257)
....+|+++||+|+|||||+++|++..+.+... .++|++|..++|+++|+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 456799999999999999999999988877541 2457899999999999999988877776
Q ss_pred ecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--
Q psy12244 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN-- 137 (257)
Q Consensus 87 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~-- 137 (257)
+. ++++|||||||.+|..++..++..+|++++|+|+.. +|+..++
T Consensus 105 ~~------~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 105 EK------RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred CC------cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhH
Confidence 55 789999999999999999999999999999999975 7775433
Q ss_pred -HHHHHHHHHHHh---C-CCccceEEecccccccccccccccCCCcccCCC---------CCCCCCCCCCCCcchhhhcc
Q psy12244 138 -PEACEEQLQTLF---N-IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGL---------AKPDSKATPYEDIPIARIRN 203 (257)
Q Consensus 138 -~~~~~~~~~~~~---~-~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 203 (257)
..+..+++..++ + ....+++|+||++|+|++++.+. ++||++. +.+.+....+..+++++...
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~---~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~ 255 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSES---MPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNR 255 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccccc---ccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEe
Confidence 233444444432 2 33578999999999999987653 4677652 23333344455676654321
Q ss_pred -----eeeEeeecccchhhHHHHHHhhC
Q psy12244 204 -----FSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 204 -----~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
..+.|++.+|....++.+...+.
T Consensus 256 ~~~~~~g~~G~V~sG~l~~Gd~v~i~P~ 283 (474)
T PRK05124 256 PNLDFRGYAGTLASGVVKVGDRVKVLPS 283 (474)
T ss_pred cCCcccceEEEEEeEEEecCCEEEEecC
Confidence 13569999999999888866554
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=203.97 Aligned_cols=194 Identities=42% Similarity=0.688 Sum_probs=152.7
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
+.++++||+|+||.++|||||+++|++.++.+... ...+++|..+.|+++|+|+......+.|... ++..+.++||||
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~-dg~~~~lnLiDT 81 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAK-DGETYILNLIDT 81 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEcc-CCCcEEEEEEEC
Confidence 34678999999999999999999999988877654 3567899999999999999988888887631 455689999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
|||.+|...+..+++.+|++|+|+|++. +|+..++.+...+++++.++....++
T Consensus 82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~v 161 (600)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDA 161 (600)
T ss_pred CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceE
Confidence 9999999999999999999999999986 78776666666777777777655568
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHHHH
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
+++||++|.|+++|+++|... ++.|......+.... .+..++.+..|++.+|....++.+..
T Consensus 162 i~iSAktG~GI~~Ll~~I~~~-----lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~ 228 (600)
T PRK05433 162 VLVSAKTGIGIEEVLEAIVER-----IPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKM 228 (600)
T ss_pred EEEecCCCCCHHHHHHHHHHh-----CccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEE
Confidence 999999999999999988632 222332222222221 23346777889999998888887744
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-25 Score=201.66 Aligned_cols=192 Identities=43% Similarity=0.669 Sum_probs=150.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+++||+|+||+|+|||||+++|++..+.+... ...+.+|..+.|+++|+|+......+.|.. .++..+.++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~-~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKA-KDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEc-CCCCEEEEEEEECCCc
Confidence 57899999999999999999999988877653 456778999999999999998887777752 1345589999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEe
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 159 (257)
.+|...+..+++.+|++|+|+|+++ +|+...+.++..+++++.++....+++++
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~v 160 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILA 160 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEe
Confidence 9999999999999999999999986 78766666666677877777655568999
Q ss_pred cccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHHHHh
Q psy12244 160 WHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
||++|.|+++|+++|.. .++.|......+.... .+..++.+..|++.+|....++.+...
T Consensus 161 SAktG~GI~~Lle~I~~-----~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~ 225 (595)
T TIGR01393 161 SAKTGIGIEEILEAIVK-----RVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFM 225 (595)
T ss_pred eccCCCCHHHHHHHHHH-----hCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEe
Confidence 99999999999998863 2233333222222222 233467778889999988888877543
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-25 Score=196.43 Aligned_cols=192 Identities=24% Similarity=0.353 Sum_probs=147.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
....+|+++||+|+|||||+++|++..+.+... .++|++|..++|+++|+|++.....+.+..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 456899999999999999999999887766431 346889999999999999999888777665
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC-
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN- 137 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~- 137 (257)
+.++|||||||++|...+..++..+|++++|+|+++ +|+.+.+
T Consensus 85 ------~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 85 ------YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred ------eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 799999999999999999999999999999999975 7775433
Q ss_pred --HHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCCcchhhh
Q psy12244 138 --PEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYEDIPIARI 201 (257)
Q Consensus 138 --~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 201 (257)
.++..+++++++ ++. ..+++++||++|.|++++... ++||++ ++.+.+....+..+++++.
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~---~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v 235 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSEN---TPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDV 235 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccC---CccccchHHHHHHhcCCCCCCccCCCcEEEEEEE
Confidence 233344555444 332 357999999999999987654 467765 2233333444556776654
Q ss_pred -----cceeeEeeecccchhhHHHHHHhhC
Q psy12244 202 -----RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 202 -----~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
.+.++.|++.+|....++.+...+.
T Consensus 236 ~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~ 265 (426)
T TIGR00483 236 YSITGVGTVPVGRVETGVLKPGDKVVFEPA 265 (426)
T ss_pred EecCCCeEEEEEEEccceeecCCEEEECCC
Confidence 3456789999999998888766554
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-25 Score=175.84 Aligned_cols=143 Identities=33% Similarity=0.438 Sum_probs=119.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEE--eecccCCccEEEEEe
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLR--YTSILDGEEYLLNLI 100 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~~~~~~~~~li 100 (257)
+.++|+++|++++|||||+++|++..+..... ......+..+.|+++++|++.....+. +.. +.++|+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~------~~i~~i 75 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN------RKITLI 75 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS------EEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc------cceeec
Confidence 57899999999999999999999988765443 113357888999999999998888877 555 899999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh----C
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF----N 150 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~----~ 150 (257)
|||||.+|..++..+++.+|++|+|||+.. +|+.+.++++..+++.+.+ +
T Consensus 76 DtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 76 DTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp EESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999997 8887555666666666333 3
Q ss_pred CC---ccceEEecccccccccccccccC
Q psy12244 151 ID---KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 151 ~~---~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.. ..|++++||++|.|+++|++.|.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~ 183 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALV 183 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHH
Confidence 33 36899999999999999988776
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-24 Score=195.64 Aligned_cols=186 Identities=33% Similarity=0.533 Sum_probs=144.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++||+|+||+++|||||+++|++..+.+... -..+++|..+.|+++|+|+......+.|.+ ++++|||||||
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~------~kinlIDTPGh 74 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG------TKINIVDTPGH 74 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC------EEEEEEECCCH
Confidence 4799999999999999999999988776544 134689999999999999999888899877 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC---CC----
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN---ID---- 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~---~~---- 152 (257)
.+|...+..+++.+|++++|||+.. +|+..++.+++.+++.+.+. ..
T Consensus 75 ~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l 154 (594)
T TIGR01394 75 ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQL 154 (594)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999986 88877777777777776652 11
Q ss_pred ccceEEecccccc----------cccccccccCCCcccCCCCCCCCCCCCCCCcch-----hhhcceeeEeeecccchhh
Q psy12244 153 KKSVLRIWHRRCF----------SCADCHRSLDSTNLNDGLAKPDSKATPYEDIPI-----ARIRNFSIIAHVDHGKSTL 217 (257)
Q Consensus 153 ~~~~i~iSa~~g~----------gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~G~v~~Gk~~~ 217 (257)
..|++++||++|. |++.|++.|.. .++.|......+..+.+ ....+....|++.+|....
T Consensus 155 ~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~-----~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~ 229 (594)
T TIGR01394 155 DFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVR-----HVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKK 229 (594)
T ss_pred cCcEEechhhcCcccccCcccccCHHHHHHHHHH-----hCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEcc
Confidence 3579999999996 67777766652 23333322233333333 2345667789999998888
Q ss_pred HHHHHHh
Q psy12244 218 ADRLLEM 224 (257)
Q Consensus 218 ~~~i~~~ 224 (257)
++.+...
T Consensus 230 G~~V~~~ 236 (594)
T TIGR01394 230 GQQVALM 236 (594)
T ss_pred CCEEEEe
Confidence 8877443
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-24 Score=198.33 Aligned_cols=194 Identities=18% Similarity=0.275 Sum_probs=146.1
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------------CCcccccchHHHhhhCceEeceeeEE
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------------GSSQVLDSLQVEQERGITVKAQTASL 84 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------------~~~~~~d~~~~e~~~g~t~~~~~~~~ 84 (257)
+.....+|+++||+|+|||||+++|++..+.+... .+++.+|..++|+++|+|++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 34456689999999999999999999988877521 24578999999999999999988888
Q ss_pred EeecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC
Q psy12244 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN 137 (257)
Q Consensus 85 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~ 137 (257)
.++. .+++|+|||||++|..++..++..+|+++||+|+.. +|+.+.+
T Consensus 100 ~~~~------~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 100 ATPK------RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred ccCC------ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccch
Confidence 7766 789999999999999999999999999999999965 7775433
Q ss_pred ---HHHHHHHHHH---HhCCCccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCCcchhhhc
Q psy12244 138 ---PEACEEQLQT---LFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYEDIPIARIR 202 (257)
Q Consensus 138 ---~~~~~~~~~~---~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 202 (257)
.++..+++.+ .+++...+++|+||++|.|++++.+. .+||++ ++.+.+....+..+++.+..
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~---~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~i~~v~ 250 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSAR---MPWYEGPSLLEHLETVEIASDRNLKDFRFPVQYVN 250 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccC---CCcccHhHHHHHHhcCCCCCCcCCCCceeeEEEEE
Confidence 2334444443 23555567999999999999976543 356654 22333333445567666431
Q ss_pred ----c-eeeEeeecccchhhHHHHHHhhC
Q psy12244 203 ----N-FSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 203 ----~-~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
. ..+.|++.+|....++.+...+.
T Consensus 251 ~~~~~~~g~~G~v~~G~l~~gd~v~i~P~ 279 (632)
T PRK05506 251 RPNLDFRGFAGTVASGVVRPGDEVVVLPS 279 (632)
T ss_pred ecCCCceEEEEEEecceeecCCEEEEcCC
Confidence 1 23569999999999988866553
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=169.54 Aligned_cols=144 Identities=24% Similarity=0.343 Sum_probs=116.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeecccCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDG 92 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ 92 (257)
+|+|+|++|+|||||+++|++..+.+... +..+.+|..+.|+++|+|++.....+.+.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~---- 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK---- 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC----
Confidence 58999999999999999999988887621 356789999999999999999888887766
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCCH---HHHH
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNANP---EACE 142 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~~---~~~~ 142 (257)
..++|||||||.+|...+..++..+|++|+|+|++. +|+...+. ....
T Consensus 77 --~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~ 154 (208)
T cd04166 77 --RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIV 154 (208)
T ss_pred --ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHH
Confidence 789999999999999888999999999999999986 67654322 2333
Q ss_pred HHHHH---HhCCCccceEEecccccccccccccccCCCcccCC
Q psy12244 143 EQLQT---LFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDG 182 (257)
Q Consensus 143 ~~~~~---~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~ 182 (257)
+++++ .++....+++++||++|.|+++... ..+||++
T Consensus 155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~~---~~~w~~g 194 (208)
T cd04166 155 ADYLAFAAKLGIEDITFIPISALDGDNVVSRSE---NMPWYSG 194 (208)
T ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCccCCC---CCCCCCC
Confidence 34433 3455456799999999999998763 4579876
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=163.52 Aligned_cols=147 Identities=56% Similarity=0.873 Sum_probs=117.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+||+++|++++|||||+++|++..+.+... ...+..+..+.++.+|+|.......+.|... ++....++||||||+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-DGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-CCCcEEEEEEECCCChh
Confidence 589999999999999999999877665443 3345667778888899998877666665321 34557899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEecc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWH 161 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSa 161 (257)
|...+..+++.+|++|+|+|+++ +|+.+.+..+..+++++.++....+++++||
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSA 159 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeec
Confidence 99999999999999999999976 7775544455556677766665446899999
Q ss_pred cccccccccccccCC
Q psy12244 162 RRCFSCADCHRSLDS 176 (257)
Q Consensus 162 ~~g~gi~~l~~~i~~ 176 (257)
++|.|+++++++|..
T Consensus 160 ~~g~gi~~l~~~l~~ 174 (179)
T cd01890 160 KTGLGVEDLLEAIVE 174 (179)
T ss_pred cCCCCHHHHHHHHHh
Confidence 999999999998873
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=186.35 Aligned_cols=194 Identities=19% Similarity=0.274 Sum_probs=140.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....+|+++||+|+|||||+++|++..+.+... .....+|..++|+++|+|++.....+.++. ..++|||||
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~------~~i~liDtP 152 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN------RHYAHVDCP 152 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC------cEEEEEECC
Confidence 457899999999999999999999877766543 233568999999999999998777776655 789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~ 151 (257)
||++|..++..++..+|++++|+|+.. +|+.... .+...+++.+++ ++
T Consensus 153 Gh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 153 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999986 7775421 233444555554 33
Q ss_pred C--ccceEEeccccccccccccccc--CCCcccCC-----------CCCCCCCCCCCCCcchhhh-----cceeeEeeec
Q psy12244 152 D--KKSVLRIWHRRCFSCADCHRSL--DSTNLNDG-----------LAKPDSKATPYEDIPIARI-----RNFSIIAHVD 211 (257)
Q Consensus 152 ~--~~~~i~iSa~~g~gi~~l~~~i--~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~ 211 (257)
+ ..|++++||.+|.|+-.-...+ ...+||+. .+.|.+....+..+++++. ++.++.|++.
T Consensus 233 ~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~ 312 (478)
T PLN03126 233 PGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVE 312 (478)
T ss_pred CcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEE
Confidence 3 5689999999997652100000 00134331 1234444445566777664 3566789999
Q ss_pred ccchhhHHHHHHhh
Q psy12244 212 HGKSTLADRLLEMT 225 (257)
Q Consensus 212 ~Gk~~~~~~i~~~~ 225 (257)
+|....++.+...+
T Consensus 313 sG~i~~Gd~v~i~p 326 (478)
T PLN03126 313 RGTVKVGETVDIVG 326 (478)
T ss_pred cCeEecCCEEEEec
Confidence 99999998886654
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=184.10 Aligned_cols=189 Identities=22% Similarity=0.361 Sum_probs=134.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
.+..+|+++||+|+|||||+++|++........ ...+.+|..++|+++|+|++.....+.... ..++|||||
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~------~~i~~iDtP 83 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEK------RHYAHVDCP 83 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCC------cEEEEEECC
Confidence 456899999999999999999998643322111 123468999999999999987655544333 788999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-C-HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-N-PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~-~~~~~~~~~~~~---~~ 151 (257)
||++|..++..++..+|++++|+|+.. +|+... + .+...+++.+++ ++
T Consensus 84 Gh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999986 777532 2 222334555543 33
Q ss_pred C--ccceEEecccccc--------cccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchh
Q psy12244 152 D--KKSVLRIWHRRCF--------SCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKST 216 (257)
Q Consensus 152 ~--~~~~i~iSa~~g~--------gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~ 216 (257)
. ..|++++||++|. +++.|++.|. +.++.|.+....++.+++.+. .+.++.|++.+|...
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~-----~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~ 238 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVD-----EYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVK 238 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHH-----HhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEe
Confidence 2 3689999999984 3344444443 223334444445556666654 455788999999999
Q ss_pred hHHHHHHhh
Q psy12244 217 LADRLLEMT 225 (257)
Q Consensus 217 ~~~~i~~~~ 225 (257)
.++.+...+
T Consensus 239 ~gd~v~i~p 247 (394)
T PRK12736 239 VGDEVEIVG 247 (394)
T ss_pred cCCEEEEec
Confidence 998886544
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=183.93 Aligned_cols=192 Identities=19% Similarity=0.283 Sum_probs=138.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....+|+++||+|+|||||+++|++..+.+... .....+|..+.|+++|+|++.....+.++. .++.|+|||
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~------~~~~~iDtP 83 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN------RHYAHVDCP 83 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC------eEEEEEECC
Confidence 456899999999999999999999877765433 223368999999999999998776665544 789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~ 151 (257)
||.+|...+..++..+|++++|+|+.. +|+...+ .+...+++.+++ ++
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred ChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999986 7775422 233334555554 33
Q ss_pred C--ccceEEecccccccccccccccC--CCcccCC-----------CCCCCCCCCCCCCcchhhh-----cceeeEeeec
Q psy12244 152 D--KKSVLRIWHRRCFSCADCHRSLD--STNLNDG-----------LAKPDSKATPYEDIPIARI-----RNFSIIAHVD 211 (257)
Q Consensus 152 ~--~~~~i~iSa~~g~gi~~l~~~i~--~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~ 211 (257)
. ..|++++||.+|.|+-+-...+. ..+||++ ++.|.+....++.+++.+. .+.++.|++.
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~ 243 (409)
T CHL00071 164 PGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIE 243 (409)
T ss_pred CCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEe
Confidence 2 36899999999987643221110 1134432 2334444445556666554 3556789999
Q ss_pred ccchhhHHHHHH
Q psy12244 212 HGKSTLADRLLE 223 (257)
Q Consensus 212 ~Gk~~~~~~i~~ 223 (257)
+|....++.+..
T Consensus 244 sG~l~~Gd~v~i 255 (409)
T CHL00071 244 RGTVKVGDTVEI 255 (409)
T ss_pred cCEEeeCCEEEE
Confidence 999999988854
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=183.12 Aligned_cols=194 Identities=19% Similarity=0.333 Sum_probs=132.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
.+..+|+++||+|+|||||+++|++........ ...+.+|.+++|+++|+|++.....+.... ..++|||||
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~------~~~~liDtp 83 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETEN------RHYAHVDCP 83 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCC------EEEEEEECC
Confidence 456899999999999999999997543221111 224578999999999999997655544333 789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~ 151 (257)
||++|..++..++..+|++++|+|+.. +|+.... .+...+++++++ ++
T Consensus 84 Gh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 84 GHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred chHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999986 7775321 222333455444 33
Q ss_pred Cc--cceEEecccccc-cccccccccCCC--cccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHHH
Q psy12244 152 DK--KSVLRIWHRRCF-SCADCHRSLDST--NLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 152 ~~--~~~i~iSa~~g~-gi~~l~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i 221 (257)
.. .|++++||++|. |..++.+.+..+ .+.+.++.|.+....++.+++++. .+.++.|++.+|....++.+
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v 243 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEV 243 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEE
Confidence 22 689999999985 333222111100 011122334444445566666654 35567899999999988887
Q ss_pred HHhh
Q psy12244 222 LEMT 225 (257)
Q Consensus 222 ~~~~ 225 (257)
...+
T Consensus 244 ~i~p 247 (394)
T TIGR00485 244 EIVG 247 (394)
T ss_pred EEec
Confidence 6543
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-23 Score=182.50 Aligned_cols=189 Identities=20% Similarity=0.346 Sum_probs=134.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
.+..+|+++||+|+|||||+++|++........ ...+.+|..++|+++|+|++.....+.+.. .+++|+|||
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~------~~i~~iDtP 83 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN------RHYAHVDCP 83 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC------cEEEEEECC
Confidence 356789999999999999999998743322111 123468999999999999997665554443 688999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-C-HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-N-PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~-~~~~~~~~~~~~---~~ 151 (257)
||.+|..++..++..+|++++|+|+.. +|+... + .+...+++..++ ++
T Consensus 84 Gh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999986 677532 1 233333454443 33
Q ss_pred C--ccceEEeccccccccc----------ccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccc
Q psy12244 152 D--KKSVLRIWHRRCFSCA----------DCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGK 214 (257)
Q Consensus 152 ~--~~~~i~iSa~~g~gi~----------~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk 214 (257)
. ..+++++||++|.|.. .|++.|. +.++.|.+....++.+++++. .+.++.|++.+|.
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~-----~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~ 238 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVD-----SYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGI 238 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHH-----hcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecE
Confidence 2 3689999999997653 2222222 112334444445566676654 3567889999999
Q ss_pred hhhHHHHHHhh
Q psy12244 215 STLADRLLEMT 225 (257)
Q Consensus 215 ~~~~~~i~~~~ 225 (257)
...++.+...+
T Consensus 239 i~~gd~v~i~p 249 (396)
T PRK12735 239 VKVGDEVEIVG 249 (396)
T ss_pred EeCCCEEEEec
Confidence 99999876544
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-23 Score=187.37 Aligned_cols=187 Identities=32% Similarity=0.492 Sum_probs=144.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
++++||+|+||+++|||||+++|++..+.+... ...+++|..+.|+++|+|+......+.|++ +.+++||||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~------~~inliDTP 76 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND------YRINIVDTP 76 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC------EEEEEEECC
Confidence 468999999999999999999999877766543 234789999999999999998888888876 899999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC---C---
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN---I--- 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~---~--- 151 (257)
||.+|...+..+++.+|++|+|+|+.. +|+..+++++..+++.+.+. .
T Consensus 77 G~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~ 156 (607)
T PRK10218 77 GHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDE 156 (607)
T ss_pred CcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999986 88888888888887777652 1
Q ss_pred -CccceEEeccccccc----------ccccccccCCCcccCCCCCCCCCCCCCCCcchh-----hhcceeeEeeecccch
Q psy12244 152 -DKKSVLRIWHRRCFS----------CADCHRSLDSTNLNDGLAKPDSKATPYEDIPIA-----RIRNFSIIAHVDHGKS 215 (257)
Q Consensus 152 -~~~~~i~iSa~~g~g----------i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~G~v~~Gk~ 215 (257)
...|++++||++|.| +..|++.|. +.+|.|......++.+.+. ...+....|+|.+|..
T Consensus 157 ~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii-----~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~l 231 (607)
T PRK10218 157 QLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIV-----DHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKV 231 (607)
T ss_pred ccCCCEEEeEhhcCcccCCccccccchHHHHHHHH-----HhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcC
Confidence 235799999999985 444444443 2344444333333334332 2355667889999988
Q ss_pred hhHHHHHH
Q psy12244 216 TLADRLLE 223 (257)
Q Consensus 216 ~~~~~i~~ 223 (257)
..++.+..
T Consensus 232 k~Gd~v~~ 239 (607)
T PRK10218 232 KPNQQVTI 239 (607)
T ss_pred cCCCEEEE
Confidence 88877743
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-23 Score=186.38 Aligned_cols=186 Identities=20% Similarity=0.241 Sum_probs=136.8
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEee------------cccCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYT------------SILDG 92 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~------------~~~~~ 92 (257)
.+...+|+++||+++|||||+.+|+.. ..|.+++|.++|+|++.+++.+.+. ....+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~-----------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~ 99 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGV-----------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSS 99 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCC-----------CcccchhhHHhCCchhccccccccccCcccCCcccccccCCC
Confidence 355678999999999999999999642 3578899999999999888765310 00000
Q ss_pred ---------------ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------
Q psy12244 93 ---------------EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------- 130 (257)
Q Consensus 93 ---------------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------- 130 (257)
....++|+|||||++|.+++..++..+|++++|||+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 100 KPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQN 179 (460)
T ss_pred cccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEe
Confidence 02478999999999999999999999999999999975
Q ss_pred -cCCCCC-CHHHHHHHHHHHh---CCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh----
Q psy12244 131 -VDLKNA-NPEACEEQLQTLF---NIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI---- 201 (257)
Q Consensus 131 -~D~~~~-~~~~~~~~~~~~~---~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 201 (257)
+|+.+. ..++..+++++++ .....++|++||++|+|++.|++.|.. .++.|.+....++.+++++.
T Consensus 180 KiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~-----~lp~~~r~~~~p~r~~Idr~F~V~ 254 (460)
T PTZ00327 180 KIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICT-----QIPIPKRDLTSPPRMIVIRSFDVN 254 (460)
T ss_pred cccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHh-----hCCCCCCCCCCCcEEEEEEEEeec
Confidence 777532 2344455565544 124568999999999999999998883 22223333333445555531
Q ss_pred ---------cceeeEeeecccchhhHHHHHHhhC
Q psy12244 202 ---------RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 202 ---------~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
++.++.|++.+|....++.+...++
T Consensus 255 ~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~ 288 (460)
T PTZ00327 255 KPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPG 288 (460)
T ss_pred ccCCcccCCceEEEEEEEeeceEecCCEEEEccC
Confidence 4667889999999999998866653
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-23 Score=167.03 Aligned_cols=144 Identities=26% Similarity=0.398 Sum_probs=115.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeecccCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDG 92 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~ 92 (257)
||+++||+++|||||+++|++..+.+... ++++++|..+.|+++|+|++.....+.+.+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~---- 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK---- 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC----
Confidence 68999999999999999999988876432 123588999999999999999998888877
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCC--
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNA-- 136 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~-- 136 (257)
+.++|||||||.+|...+..+++.+|++|+|+|+.+ +|+...
T Consensus 77 --~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~ 154 (219)
T cd01883 77 --YRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNW 154 (219)
T ss_pred --eEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccc
Confidence 899999999999999999999999999999999863 676521
Q ss_pred ---CHHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC
Q psy12244 137 ---NPEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG 182 (257)
Q Consensus 137 ---~~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~ 182 (257)
.+++..++++..+ +.. ..+++++||++|.|+++--+ .++||++
T Consensus 155 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~---~~~w~~g 205 (219)
T cd01883 155 SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSE---NMPWYKG 205 (219)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCC---CCCCccC
Confidence 1344555554433 332 36799999999999996553 4569877
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=161.18 Aligned_cols=136 Identities=24% Similarity=0.394 Sum_probs=106.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+|+++||+|+|||||+++|++......+. ...+.+|..+.|+++|+|++.....+.+.. .+++|+|||||
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~------~~i~~iDtPG~ 75 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN------RHYAHVDCPGH 75 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC------eEEEEEECcCH
Confidence 3689999999999999999998764322211 223568999999999999998777666544 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC--
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI-- 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~-- 151 (257)
.+|...+..++..+|++++|+|+.. +|+.... .+...+++.+.+ ++
T Consensus 76 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 76 ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999976 6774321 233444555554 44
Q ss_pred CccceEEecccccccccc
Q psy12244 152 DKKSVLRIWHRRCFSCAD 169 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~ 169 (257)
...|++|+||++|.|+.+
T Consensus 156 ~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 156 DNTPIVRGSALKALEGDD 173 (195)
T ss_pred cCCeEEEeeCccccCCCC
Confidence 347899999999999764
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-23 Score=179.83 Aligned_cols=188 Identities=21% Similarity=0.350 Sum_probs=133.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....+|+++||+|+|||||+++|++........ ...+.+|..++|+++|+|++.....+.+.. .+++|+|||
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~------~~i~~iDtP 83 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK------RHYAHVDCP 83 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC------eEEEEEECC
Confidence 456789999999999999999998743221111 222368999999999999998765554443 789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-C-HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-N-PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~-~~~~~~~~~~~~---~~ 151 (257)
||.+|..++..++..+|++++|+|+.. +|+... . ++...+++.+++ ++
T Consensus 84 G~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999986 676532 1 223344555554 33
Q ss_pred --CccceEEecccccccc----------cccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccc
Q psy12244 152 --DKKSVLRIWHRRCFSC----------ADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGK 214 (257)
Q Consensus 152 --~~~~~i~iSa~~g~gi----------~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk 214 (257)
...|++++||++|.+- ..|++.|.. .++.|.+....++.+++++. .+.++.|++.+|.
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~-----~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~ 238 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS-----YIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGI 238 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHh-----cCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeE
Confidence 3468999999998652 233333331 12334444445566776654 4456789999999
Q ss_pred hhhHHHHHHh
Q psy12244 215 STLADRLLEM 224 (257)
Q Consensus 215 ~~~~~~i~~~ 224 (257)
...++.+...
T Consensus 239 i~~gd~v~i~ 248 (396)
T PRK00049 239 IKVGEEVEIV 248 (396)
T ss_pred EecCCEEEEe
Confidence 9988887543
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=181.26 Aligned_cols=190 Identities=21% Similarity=0.301 Sum_probs=132.8
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCc-ccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSS-QVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~-~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
...+..+|+++||+|+|||||+++|++........ ... ..+|..++|+++|+|++.....+.++. .+++|+|
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~------~~i~~iD 130 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK------RHYAHVD 130 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC------eEEEEEE
Confidence 34467899999999999999999997432111111 111 258999999999999998766665544 7899999
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF--- 149 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~--- 149 (257)
||||.+|..++..++..+|++++|+|+.. +|+.+.. .+...+++++++
T Consensus 131 tPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 131 CPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred CCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999976 7775321 222233444443
Q ss_pred CCC--ccceEEeccc---cccc-------ccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecc
Q psy12244 150 NID--KKSVLRIWHR---RCFS-------CADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDH 212 (257)
Q Consensus 150 ~~~--~~~~i~iSa~---~g~g-------i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~ 212 (257)
++. ..|++++||. +|.| +..|++.|.. .++.|.+....++.+++++. .+.++.|++.+
T Consensus 211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~-----~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~ 285 (447)
T PLN03127 211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDE-----YIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQ 285 (447)
T ss_pred CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHH-----hCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEc
Confidence 332 4688999886 4555 3445554442 23334444445566776654 45678899999
Q ss_pred cchhhHHHHHHh
Q psy12244 213 GKSTLADRLLEM 224 (257)
Q Consensus 213 Gk~~~~~~i~~~ 224 (257)
|....++.+...
T Consensus 286 G~i~~Gd~v~i~ 297 (447)
T PLN03127 286 GTIKVGEEVEIV 297 (447)
T ss_pred cEEecCCEEEEc
Confidence 999999988543
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-23 Score=182.06 Aligned_cols=184 Identities=20% Similarity=0.289 Sum_probs=133.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEee--------------cccCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYT--------------SILDG 92 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------~~~~~ 92 (257)
...+|+++|++|+|||||+++|.. ...|.+++|+++|+|++..+..+.+. ..+++
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~-----------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTG-----------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPN 71 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhC-----------eecccCHhHHHcCceeEecccccccccccccCccccccccccccc
Confidence 457899999999999999999943 13678889999999999876654421 00011
Q ss_pred ------ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC-
Q psy12244 93 ------EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN- 137 (257)
Q Consensus 93 ------~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~- 137 (257)
....++|||||||++|..++..++..+|++++|+|+++ +|+...+
T Consensus 72 ~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~ 151 (406)
T TIGR03680 72 CGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEK 151 (406)
T ss_pred cccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHH
Confidence 13679999999999999999999999999999999983 6665422
Q ss_pred HHHHHHHHHHHhC---CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-------------
Q psy12244 138 PEACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI------------- 201 (257)
Q Consensus 138 ~~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 201 (257)
..+..+++.+++. ....+++++||++|+|+++|+++|... ++.+.+....+..+++++.
T Consensus 152 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~-----l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~ 226 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF-----IPTPERDLDKPPLMYVARSFDVNKPGTPPEKL 226 (406)
T ss_pred HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh-----CCCCCCCCCCCcEEEEEEEEeecCCCccccCC
Confidence 1222344444432 224679999999999999999998742 1223333334455666542
Q ss_pred cceeeEeeecccchhhHHHHHHhhC
Q psy12244 202 RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 202 ~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
++.++.|++.+|....++.+...++
T Consensus 227 ~G~Vv~G~v~~G~i~~gd~v~i~P~ 251 (406)
T TIGR03680 227 KGGVIGGSLIQGKLKVGDEIEIRPG 251 (406)
T ss_pred ceeEEEEEEEeCEEeCCCEEEEccC
Confidence 3456889999999999999888765
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-22 Score=185.25 Aligned_cols=174 Identities=18% Similarity=0.258 Sum_probs=132.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
.|+++|++|+|||||+++|++. ..|.+++|+++|+|++..+..+.... ...++|||||||++|.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~-----------~~dr~~eE~~rGiTI~l~~~~~~~~~-----g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV-----------NADRLPEEKKRGMTIDLGYAYWPQPD-----GRVLGFIDVPGHEKFL 65 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-----------CCccchhcccCCceEEeeeEEEecCC-----CcEEEEEECCCHHHHH
Confidence 5899999999999999999542 24777888999999998776654421 2568999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-CHHHHHHHHHHHh---CCCccceEE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-NPEACEEQLQTLF---NIDKKSVLR 158 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~~~~~~~~~~~~~---~~~~~~~i~ 158 (257)
.++..++..+|++++|+|++. +|+.+. ..+...+++++.+ ++...++|+
T Consensus 66 ~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~ 145 (614)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFV 145 (614)
T ss_pred HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 999999999999999999986 677542 2344555666554 344568999
Q ss_pred ecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHHHHHhh
Q psy12244 159 IWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+||++|.|+++|++.|...+. +......+..+++++. .+.++.|++.+|....++.+...+
T Consensus 146 VSA~tG~gI~~L~~~L~~~~~------~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p 211 (614)
T PRK10512 146 TAATEGRGIDALREHLLQLPE------REHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTG 211 (614)
T ss_pred EeCCCCCCCHHHHHHHHHhhc------cccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcC
Confidence 999999999999999985431 1111233455666653 456788999999999998886544
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=185.47 Aligned_cols=176 Identities=21% Similarity=0.303 Sum_probs=133.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|++.. .|.+++|..+|+|++..+..+.+.+ ..++|||||||++|.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~-----------~d~~~eE~~rGiTid~~~~~~~~~~------~~v~~iDtPGhe~f~ 64 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA-----------ADRLPEEKKRGMTIDLGFAYFPLPD------YRLGFIDVPGHEKFI 64 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc-----------CcCChhHhcCCceEEeEEEEEEeCC------EEEEEEECCCHHHHH
Confidence 68999999999999999996421 3667788899999998888777654 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC-HHHHHHHHHHHh---CCC-ccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN-PEACEEQLQTLF---NID-KKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~-~~~~~~~~~~~~---~~~-~~~~i 157 (257)
.++..++..+|++++|+|+++ +|+.+.+ .+...+++++++ ++. ..++|
T Consensus 65 ~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii 144 (581)
T TIGR00475 65 SNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIF 144 (581)
T ss_pred HHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEE
Confidence 999999999999999999986 6765432 223344444443 332 57899
Q ss_pred EecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHHHHHhhC
Q psy12244 158 RIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
++||++|.|++++++.|... .+.+..+. ...+..+++++. .+.++.|++.+|....++.+...+.
T Consensus 145 ~vSA~tG~GI~eL~~~L~~l--~~~~~~~~--~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~ 214 (581)
T TIGR00475 145 KTSAKTGQGIGELKKELKNL--LESLDIKR--IQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPI 214 (581)
T ss_pred EEeCCCCCCchhHHHHHHHH--HHhCCCcC--cCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCC
Confidence 99999999999999887632 22222211 233456676653 3457789999999999998866653
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-22 Score=169.58 Aligned_cols=184 Identities=32% Similarity=0.502 Sum_probs=145.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
...+||+|+-|+++|||||+.+|+.+.+..... -...++|....|+++|+|+-...+.+.|++ +.++++|||
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~------~~INIvDTP 76 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG------TRINIVDTP 76 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC------eEEEEecCC
Confidence 457899999999999999999999988877655 344678999999999999999999999988 999999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh---CCC--
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF---NID-- 152 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~---~~~-- 152 (257)
||.+|-.+..+.++..|+++|+|||.+ +|++.++++++.++..++| +..
T Consensus 77 GHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de 156 (603)
T COG1217 77 GHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE 156 (603)
T ss_pred CcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChh
Confidence 999999999999999999999999998 8999999999988887765 221
Q ss_pred --ccceEEecccccc----------cccccccccCCCcccCCCCCCCCCCCCCCCcch-----hhhcceeeEeeecccch
Q psy12244 153 --KKSVLRIWHRRCF----------SCADCHRSLDSTNLNDGLAKPDSKATPYEDIPI-----ARIRNFSIIAHVDHGKS 215 (257)
Q Consensus 153 --~~~~i~iSa~~g~----------gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~G~v~~Gk~ 215 (257)
..|++..||+.|. ++.-||+.|. +..|.|......+.++.+ ....+..++|++.+|+.
T Consensus 157 QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~-----~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~v 231 (603)
T COG1217 157 QLDFPIVYASARNGTASLDPEDEADDMAPLFETIL-----DHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTV 231 (603)
T ss_pred hCCCcEEEeeccCceeccCccccccchhHHHHHHH-----HhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcc
Confidence 2478999999985 2233444333 344556655555555543 23456667888888877
Q ss_pred hhHHH
Q psy12244 216 TLADR 220 (257)
Q Consensus 216 ~~~~~ 220 (257)
..+..
T Consensus 232 k~~q~ 236 (603)
T COG1217 232 KPNQQ 236 (603)
T ss_pred cCCCe
Confidence 65554
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-22 Score=177.31 Aligned_cols=185 Identities=21% Similarity=0.285 Sum_probs=134.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc--------------cC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------------LD 91 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------------~~ 91 (257)
++..+|+++||.++|||||+++|.. ...|..++|+++|+|++..+..+.+... .+
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~-----------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTG-----------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCP 75 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhC-----------eecccCHhHHhcCcEEEecccccccccccccCcccccccccccc
Confidence 3567899999999999999999943 1368888999999999987655444210 00
Q ss_pred ------CccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC
Q psy12244 92 ------GEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN 137 (257)
Q Consensus 92 ------~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~ 137 (257)
+..+.++|||||||++|..++..++..+|++++|+|+.. +|+.+.+
T Consensus 76 ~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 76 NCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred ccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccch
Confidence 113689999999999999999999999999999999983 6665432
Q ss_pred -HHHHHHHHHHHhC---CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh------------
Q psy12244 138 -PEACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI------------ 201 (257)
Q Consensus 138 -~~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 201 (257)
.....++++.++. ....+++++||++|.|+++|++.|... ++.+.+....+..+++.+.
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~-----l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~ 230 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEE-----IPTPERDLDKPPRMYVARSFDVNKPGTPPEK 230 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHh-----CCCCCCCCCCCceEEEEeeeeecCCCccccC
Confidence 2223344554442 224679999999999999999988742 1223333334445666542
Q ss_pred -cceeeEeeecccchhhHHHHHHhhC
Q psy12244 202 -RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 202 -~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
++.++.|++.+|....++.+...++
T Consensus 231 ~~G~Vv~G~v~~G~l~~gd~v~i~P~ 256 (411)
T PRK04000 231 LKGGVIGGSLIQGVLKVGDEIEIRPG 256 (411)
T ss_pred CcceEEEEEEEeCEEecCCEEEEcCC
Confidence 3457889999999999998877664
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=162.28 Aligned_cols=136 Identities=35% Similarity=0.493 Sum_probs=116.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
||+++||+|+|||||+++|++..+.+... +..+.+|..+.|+++|+|++.....+.|.+ ++++|||||||
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~------~~i~liDTPG~ 74 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD------HRINIIDTPGH 74 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC------EEEEEEECCCc
Confidence 68999999999999999999888766432 457789999999999999999999999987 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccc-eEE
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKS-VLR 158 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~-~i~ 158 (257)
.+|...+..+++.+|++++|+|+.. +|+..++.+...+++++.++....+ ++|
T Consensus 75 ~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~P 154 (270)
T cd01886 75 VDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEec
Confidence 9999999999999999999999976 8888778888899999988765443 689
Q ss_pred eccccc-ccccccc
Q psy12244 159 IWHRRC-FSCADCH 171 (257)
Q Consensus 159 iSa~~g-~gi~~l~ 171 (257)
+|+..+ .|+-++.
T Consensus 155 isa~~~f~g~vd~~ 168 (270)
T cd01886 155 IGEEDDFRGVVDLI 168 (270)
T ss_pred cccCCCceEEEEcc
Confidence 998754 3444443
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=158.29 Aligned_cols=184 Identities=20% Similarity=0.346 Sum_probs=130.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccc--cCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVL--SSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~--~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....||+.+||+++|||||..+|........ ....+...|..++|+++|+|++.....++... ..+..+|||
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~------rhyahVDcP 83 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN------RHYAHVDCP 83 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC------ceEEeccCC
Confidence 4567999999999999999999865332111 11233446788999999999986655555444 678899999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-C-HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-N-PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~-~~~~~~~~~~~~---~~ 151 (257)
||.||.++|+.++.++|++|||+.|.+ +|+.+. + .+.+..+++++| ++
T Consensus 84 GHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred ChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998 676542 2 333344445444 55
Q ss_pred C--ccceEEeccccc-cc-------ccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchh
Q psy12244 152 D--KKSVLRIWHRRC-FS-------CADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKST 216 (257)
Q Consensus 152 ~--~~~~i~iSa~~g-~g-------i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~ 216 (257)
+ ..|++.-||+.. +| |.+|++.+. +.++.|.+...+++.+|+.+. |+.++.|++..|...
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd-----~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lk 238 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVD-----SYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILK 238 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHH-----hcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeec
Confidence 5 457877776652 22 344444444 556778888888888998776 455566777777665
Q ss_pred hHHH
Q psy12244 217 LADR 220 (257)
Q Consensus 217 ~~~~ 220 (257)
.++.
T Consensus 239 vg~e 242 (394)
T COG0050 239 VGEE 242 (394)
T ss_pred cCCE
Confidence 5554
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=151.31 Aligned_cols=141 Identities=40% Similarity=0.638 Sum_probs=109.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCC--CcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG--SSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~--~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+++|+++|++|+|||||+++|++..+.+.... ..+..+..+.+...|+|.......+.+.. ..++||||||+
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~------~~~~l~DtpG~ 75 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKD------TKINIVDTPGH 75 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECC------EEEEEEECCCc
Confidence 57999999999999999999998655543331 13446666778888888877666666655 88999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh---C----CC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF---N----ID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~---~----~~ 152 (257)
.+|...+..+++.+|++++|+|+.+ +|+...+.+...+++.+.+ + ..
T Consensus 76 ~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (194)
T cd01891 76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccC
Confidence 9999999999999999999999876 7876555555555555544 1 12
Q ss_pred ccceEEeccccccccccccccc
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i 174 (257)
..+++++||++|.|+.++.+..
T Consensus 156 ~~~iv~~Sa~~g~~~~~~~~~~ 177 (194)
T cd01891 156 DFPVLYASAKNGWASLNLEDPS 177 (194)
T ss_pred ccCEEEeehhccccccccccch
Confidence 4579999999999997765443
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=161.20 Aligned_cols=189 Identities=21% Similarity=0.294 Sum_probs=144.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec--------------ccC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS--------------ILD 91 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--------------~~~ 91 (257)
+...||+++||+++|||||..+|.+- -.|.+.+|-++|+|+..+++...+.. .|.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGv-----------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~ 76 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGV-----------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCP 76 (415)
T ss_pred CcceEeeeeeecccchhhheehhhce-----------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCC
Confidence 45679999999999999999999541 36889999999999998888643211 011
Q ss_pred ------CccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCC-
Q psy12244 92 ------GEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNA- 136 (257)
Q Consensus 92 ------~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~- 136 (257)
.-.+.+.|+|+|||+-++..|++++...|+++||++|++ +|+...
T Consensus 77 ~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E 156 (415)
T COG5257 77 NCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRE 156 (415)
T ss_pred CCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHH
Confidence 123578999999999999999999999999999999998 666432
Q ss_pred CHHHHHHHHHHHhC---CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCc-------------chhh
Q psy12244 137 NPEACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDI-------------PIAR 200 (257)
Q Consensus 137 ~~~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 200 (257)
...+..+++++++. ....|++|+||..+.|++.|+++|.+ .++.|.++...+..| +..+
T Consensus 157 ~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~-----~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~ 231 (415)
T COG5257 157 RALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEK-----YIPTPERDLDKPPRMYVARSFDVNKPGTPPEE 231 (415)
T ss_pred HHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHH-----hCCCCccCCCCCceEEEEeecccCCCCCCHHH
Confidence 23455567777762 34569999999999999999999983 444444433332222 3455
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS 230 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~ 230 (257)
.++-++-|.+-.|...++|.|-..+|....
T Consensus 232 L~GGViGGsl~~G~l~vGDEIEIrPGi~v~ 261 (415)
T COG5257 232 LKGGVIGGSLVQGVLRVGDEIEIRPGIVVE 261 (415)
T ss_pred ccCceecceeeeeeEecCCeEEecCCeEee
Confidence 677788899999999999999888886544
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=175.22 Aligned_cols=144 Identities=34% Similarity=0.478 Sum_probs=123.4
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
..+.++++||+|+||+|+|||||+++|++..+.+... +..+++|..+.|+++|+|++.....+.|.+ +++
T Consensus 4 ~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~------~~~ 77 (693)
T PRK00007 4 ETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD------HRI 77 (693)
T ss_pred cCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC------eEE
Confidence 3456789999999999999999999999887765432 457899999999999999999999999877 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
+|+|||||.+|..++..+++.+|++|+|+|+.. +|+.+++.....+++++.++.
T Consensus 78 ~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 78 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred EEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999976 888888888888999888865
Q ss_pred Cc-cceEEeccccc-ccccccc
Q psy12244 152 DK-KSVLRIWHRRC-FSCADCH 171 (257)
Q Consensus 152 ~~-~~~i~iSa~~g-~gi~~l~ 171 (257)
.. ...+|+|+..+ .|+.+++
T Consensus 158 ~~~~~~ipisa~~~f~g~~d~~ 179 (693)
T PRK00007 158 NPVPIQLPIGAEDDFKGVVDLV 179 (693)
T ss_pred CeeeEEecCccCCcceEEEEcc
Confidence 43 34689999887 4555544
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-21 Score=151.49 Aligned_cols=140 Identities=24% Similarity=0.379 Sum_probs=106.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc--------cCCccEEEEEeC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------LDGEEYLLNLID 101 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------~~~~~~~~~liD 101 (257)
+|+++|++|+|||||+++|+...+ ...++....++++|+|++.....+.+... ..+..+.+++||
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~-------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 74 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS-------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVD 74 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc-------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEE
Confidence 799999999999999999986421 23467778889999999988777776510 022357899999
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCC-CHHHHHHHHHH----Hh-
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNA-NPEACEEQLQT----LF- 149 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~-~~~~~~~~~~~----~~- 149 (257)
||||.+|......++..+|++++|+|+.. +|+... ..+...+++++ .+
T Consensus 75 tpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 75 CPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888889999999999975 666432 22333333333 22
Q ss_pred --CCCccceEEecccccccccccccccCC
Q psy12244 150 --NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 --~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+....+++++||++|.|+++|++.|..
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~ 183 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNN 183 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHh
Confidence 334568999999999999999998873
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=170.10 Aligned_cols=181 Identities=17% Similarity=0.261 Sum_probs=121.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+++|+|+|++|+|||||+|+|++...... ....|+|.+.....+.+.+ ..+.+|||||+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v-------------~~~~gvT~d~~~~~~~~~~------~~~~l~DT~G~ 96 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVV-------------EDVPGVTRDRVSYDAEWNG------RRFTVVDTGGW 96 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccc-------------cCCCCCCEeeEEEEEEECC------cEEEEEeCCCc
Confidence 3567899999999999999999976433221 2255777776666666655 67899999998
Q ss_pred cc--------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 106 VD--------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~--------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
.. +...+..++..+|++|+|+|++. +|+.....+ ..++. .+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~--~~~~~-~~g~ 173 (472)
T PRK03003 97 EPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD--AAALW-SLGL 173 (472)
T ss_pred CCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh--hHHHH-hcCC
Confidence 63 44455667889999999999986 665432111 11111 1233
Q ss_pred CccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS 231 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~ 231 (257)
. .++++||++|.|+++|++.|..... +. +.. . . ...+...++++|+.+.||+++..+++.........
T Consensus 174 ~--~~~~iSA~~g~gi~eL~~~i~~~l~-~~---~~~-~-~----~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~ 241 (472)
T PRK03003 174 G--EPHPVSALHGRGVGDLLDAVLAALP-EV---PRV-G-S----ASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDD 241 (472)
T ss_pred C--CeEEEEcCCCCCcHHHHHHHHhhcc-cc---ccc-c-c----ccccceEEEEECCCCCCHHHHHHHHhCCCcccccC
Confidence 2 3579999999999999988874321 10 000 0 0 01134689999999999999999998765433333
Q ss_pred CCccccCCh
Q psy12244 232 GSSQVLDSL 240 (257)
Q Consensus 232 g~~~~~d~~ 240 (257)
-.+++.|..
T Consensus 242 ~~gtT~d~~ 250 (472)
T PRK03003 242 VAGTTVDPV 250 (472)
T ss_pred CCCccCCcc
Confidence 334555543
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=173.99 Aligned_cols=138 Identities=33% Similarity=0.496 Sum_probs=120.2
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEE
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYL 96 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~ 96 (257)
...+.++++||+|+||+|+|||||+++|++..+.+... ++.+.+|..+.|+++|+|++.....+.|.+ ++
T Consensus 3 ~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~------~~ 76 (689)
T TIGR00484 3 RTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG------HR 76 (689)
T ss_pred CcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC------eE
Confidence 34567789999999999999999999999888766332 456889999999999999999999999977 89
Q ss_pred EEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 97 LNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 97 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
++|||||||.+|...+..+++.+|++|+|+|+.. +|+..++..+..+++++.++
T Consensus 77 i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~ 156 (689)
T TIGR00484 77 INIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLG 156 (689)
T ss_pred EEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999986 88887788888899988887
Q ss_pred CCccc-eEEeccccc
Q psy12244 151 IDKKS-VLRIWHRRC 164 (257)
Q Consensus 151 ~~~~~-~i~iSa~~g 164 (257)
....+ .+|+|+..+
T Consensus 157 ~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 157 ANAVPIQLPIGAEDN 171 (689)
T ss_pred CCceeEEeccccCCC
Confidence 65433 689999876
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-20 Score=154.01 Aligned_cols=140 Identities=30% Similarity=0.506 Sum_probs=113.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
.|||+|+||+|+|||||+++|++..+.+.+. ......|..+.|+++++++......+.|.+ +.++|
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~------~~i~l 75 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD------CVINL 75 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC------EEEEE
Confidence 5899999999999999999999988776543 255678999999999999998888888877 89999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
||||||.+|...+..+++.+|++|+|+|+.. +|+..++.....+++++.++...
T Consensus 76 iDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~ 155 (267)
T cd04169 76 LDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDC 155 (267)
T ss_pred EECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCc
Confidence 9999999999989999999999999999976 78777777777888888888765
Q ss_pred cce-EEecccccccccccccccC
Q psy12244 154 KSV-LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~-i~iSa~~g~gi~~l~~~i~ 175 (257)
.|+ +|+. .|.++.-+.+.+.
T Consensus 156 ~~~~~Pi~--~~~~~~g~vd~~~ 176 (267)
T cd04169 156 TPLTWPIG--MGKDFKGVYDRRT 176 (267)
T ss_pred eeEEeccc--CCCceEEEEEhhh
Confidence 542 4443 3444443434343
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-21 Score=170.52 Aligned_cols=175 Identities=22% Similarity=0.289 Sum_probs=135.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+++.|+++||+++|||||+..+...+... ....|+|...+..++.+.. .....++|+|||||
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~--------------~EaGGITQhIGA~~v~~~~---~~~~~itFiDTPGH 65 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA--------------GEAGGITQHIGAYQVPLDV---IKIPGITFIDTPGH 65 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcccc--------------ccCCceeeEeeeEEEEecc---CCCceEEEEcCCcH
Confidence 467789999999999999999996543322 1246789888888887742 01258999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCC------c
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNID------K 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~------~ 153 (257)
+-|..+..++...+|+++||||+++ +|+++.+++....++++. |+. .
T Consensus 66 eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~~E~~gg~ 144 (509)
T COG0532 66 EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLVPEEWGGD 144 (509)
T ss_pred HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCCHhhcCCc
Confidence 9999999999999999999999999 999998998888888764 322 2
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcc
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVL 229 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~ 229 (257)
..++|+||++|+|+++|++.+..++-...+ ...+....+++++..+.+.|...+.+.|++ +|++.
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill~aev~el----------ka~~~~~a~gtviE~~~dkG~G~vatviv~-~GtL~ 209 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILLLAEVLEL----------KANPEGPARGTVIEVKLDKGLGPVATVIVQ-DGTLK 209 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHHHHHhh----------hcCCCCcceEEEEEEEeccCCCceEEEEEe-cCeEe
Confidence 468999999999999999988754321111 112233457888999999999898888877 66653
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=145.92 Aligned_cols=130 Identities=28% Similarity=0.415 Sum_probs=95.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|++.. .+.+..+..+++|++.....+.+.. ...+.+|||||+++|.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~DtpG~~~~~ 65 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE-----------TDRLPEEKKRGITIDLGFAYLDLPS-----GKRLGFIDVPGHEKFI 65 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc-----------cccchhhhccCceEEeeeEEEEecC-----CcEEEEEECCChHHHH
Confidence 68999999999999999996421 1233445566778877666665541 2689999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC-HHHHHHHHHHHhC---CCccceEE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN-PEACEEQLQTLFN---IDKKSVLR 158 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~-~~~~~~~~~~~~~---~~~~~~i~ 158 (257)
..+..+++.+|++++|+|+++ +|+.... .....+++.+.+. ....++++
T Consensus 66 ~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (164)
T cd04171 66 KNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFP 145 (164)
T ss_pred HHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEE
Confidence 888888999999999999864 5554321 1223344444442 23467999
Q ss_pred ecccccccccccccccC
Q psy12244 159 IWHRRCFSCADCHRSLD 175 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~ 175 (257)
+||++|.|++++++.+.
T Consensus 146 ~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 146 VSAVTGEGIEELKEYLD 162 (164)
T ss_pred EeCCCCcCHHHHHHHHh
Confidence 99999999999988765
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-21 Score=170.01 Aligned_cols=175 Identities=18% Similarity=0.224 Sum_probs=118.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
++|+++|++|+|||||+|+|++....+.. ...+.|.+.....+.+.+ ..+.+|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-------------~~~~~t~d~~~~~~~~~~------~~~~liDT~G~~~~ 62 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-------------DTPGVTRDRIYGEAEWLG------REFILIDTGGIEPD 62 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC-------------CCCCCcccceEEEEEECC------cEEEEEECCCCCCc
Confidence 57999999999999999999764432221 235667776666677765 7899999999987
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCcc
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
+......++..+|++|+|+|+.. +|..+ .+ ..+.++..+...
T Consensus 63 ~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~--~~---~~~~~~~~lg~~ 137 (435)
T PRK00093 63 DDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD--EE---ADAYEFYSLGLG 137 (435)
T ss_pred chhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc--ch---hhHHHHHhcCCC
Confidence 33445567889999999999986 44322 11 122222222223
Q ss_pred ceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCc
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS 234 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~ 234 (257)
+++++||++|.|++++++.+.... ........ .....+++++|+.++||+++.++++..+..+.....+
T Consensus 138 ~~~~iSa~~g~gv~~l~~~I~~~~-----~~~~~~~~------~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g 206 (435)
T PRK00093 138 EPYPISAEHGRGIGDLLDAILEEL-----PEEEEEDE------EDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG 206 (435)
T ss_pred CCEEEEeeCCCCHHHHHHHHHhhC-----Cccccccc------cccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC
Confidence 479999999999999998887411 00000000 1123678999999999999999999876544333333
Q ss_pred cccC
Q psy12244 235 QVLD 238 (257)
Q Consensus 235 ~~~d 238 (257)
++.|
T Consensus 207 tt~~ 210 (435)
T PRK00093 207 TTRD 210 (435)
T ss_pred ceEE
Confidence 4433
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-21 Score=152.57 Aligned_cols=137 Identities=25% Similarity=0.301 Sum_probs=102.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc-------------------
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI------------------- 89 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~------------------- 89 (257)
.+|+++||.|+|||||+.+|... ..|..+.+.++++|+...+..+.|...
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-----------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-----------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPE 69 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccccc
Confidence 37999999999999999999431 245667788888888877777665400
Q ss_pred --c------CCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCC
Q psy12244 90 --L------DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDL 133 (257)
Q Consensus 90 --~------~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~ 133 (257)
+ ......++|||||||++|...+..++..+|++++|+|+.. +|+
T Consensus 70 ~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 70 CECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred ccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 0 0112789999999999999999999999999999999974 565
Q ss_pred CCC-CHHHHHHHHHHHhC---CCccceEEecccccccccccccccCC
Q psy12244 134 KNA-NPEACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 134 ~~~-~~~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
... ......+.+++.+. ....++|++||++|+|+++|+++|..
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 432 22333445555442 23457999999999999999998873
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=167.12 Aligned_cols=175 Identities=18% Similarity=0.252 Sum_probs=119.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc---
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV--- 106 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~--- 106 (257)
+|+++|++|+|||||+|+|++...++.. ...|.|.+.....+.+.+ ..+.+|||||+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-------------~~~g~t~d~~~~~~~~~~------~~~~liDTpG~~~~~ 61 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-------------DTPGVTRDRKYGDAEWGG------REFILIDTGGIEEDD 61 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceec-------------CCCCcccCceEEEEEECC------eEEEEEECCCCCCcc
Confidence 4899999999999999999865433322 245777777777777766 689999999973
Q ss_pred -----ccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 107 -----DFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 107 -----~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
.+...+..+++.+|++++|+|+.. +|+...+. ...+ +..+...+
T Consensus 62 ~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--~~~~---~~~lg~~~ 136 (429)
T TIGR03594 62 DGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--VAAE---FYSLGFGE 136 (429)
T ss_pred hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--cHHH---HHhcCCCC
Confidence 355567778899999999999976 55543221 1112 22233336
Q ss_pred eEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCcc
Q psy12244 156 VLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ 235 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~ 235 (257)
++++||++|.|++++++.+.... +...... . ......+++++|+.++||+++.++++..++.....-.++
T Consensus 137 ~~~vSa~~g~gv~~ll~~i~~~l-----~~~~~~~-~----~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gt 206 (429)
T TIGR03594 137 PIPISAEHGRGIGDLLDAILELL-----PEEEEEE-E----EEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGT 206 (429)
T ss_pred eEEEeCCcCCChHHHHHHHHHhc-----Ccccccc-c----ccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCc
Confidence 89999999999999988876321 1111100 0 011235689999999999999999988665443333344
Q ss_pred ccC
Q psy12244 236 VLD 238 (257)
Q Consensus 236 ~~d 238 (257)
+.|
T Consensus 207 t~~ 209 (429)
T TIGR03594 207 TRD 209 (429)
T ss_pred eEC
Confidence 444
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-20 Score=172.80 Aligned_cols=174 Identities=20% Similarity=0.286 Sum_probs=122.6
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..++++|+|+|++|+|||||+++|...... ....+|+|.......+.+.+ +.++||||||
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~--------------~~e~~GIT~~iga~~v~~~~------~~ItfiDTPG 346 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA--------------AGEAGGITQHIGAYQVETNG------GKITFLDTPG 346 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc--------------ccccCceeeeccEEEEEECC------EEEEEEECCC
Confidence 357889999999999999999999642211 12246788887777777755 7899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC------C
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI------D 152 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~------~ 152 (257)
|.+|..++..+++.+|++|||+|+++ +|+...+.+.+..++... +. .
T Consensus 347 he~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~-~~~~e~~g~ 425 (787)
T PRK05306 347 HEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY-GLVPEEWGG 425 (787)
T ss_pred CccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh-cccHHHhCC
Confidence 99999999999999999999999986 888766666666655432 11 1
Q ss_pred ccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCc-----chhhhcceeeEeeecccchhhHHHHH
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDI-----PIARIRNFSIIAHVDHGKSTLADRLL 222 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~G~v~~Gk~~~~~~i~ 222 (257)
..++|++||++|.|+++|+++|.... +.+. .......+... ..+..++.+..+.+.+|....++.++
T Consensus 426 ~vp~vpvSAktG~GI~eLle~I~~~~--e~~~-l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv 497 (787)
T PRK05306 426 DTIFVPVSAKTGEGIDELLEAILLQA--EVLE-LKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVV 497 (787)
T ss_pred CceEEEEeCCCCCCchHHHHhhhhhh--hhhh-cccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEE
Confidence 35799999999999999999887321 1111 00001111111 12334566677777788777766654
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=148.67 Aligned_cols=120 Identities=37% Similarity=0.594 Sum_probs=105.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
||+++|++|+|||||+++|++..+.+.+. ...+..|..+.|+++|+|+......+.|.+ ++++|||||||
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~------~~i~liDTPG~ 74 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED------TKVNLIDTPGH 74 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC------EEEEEEeCCCc
Confidence 68999999999999999999988776543 456778999999999999999888888877 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
.+|...+..+++.+|++++|+|+.. +|+..+++++..+++++.++....|
T Consensus 75 ~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~ 150 (237)
T cd04168 75 MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVP 150 (237)
T ss_pred cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEE
Confidence 9999999999999999999999987 7887778888899999888765443
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-20 Score=169.51 Aligned_cols=175 Identities=19% Similarity=0.265 Sum_probs=121.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.++++|+++|++|+|||||+++|..... .....+|+|.+.....+.+.. ...++|||||||
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v--------------~~~e~~GIT~~ig~~~v~~~~-----~~~i~~iDTPGh 145 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKV--------------AQGEAGGITQHIGAYHVENED-----GKMITFLDTPGH 145 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc--------------ccccCCceeecceEEEEEECC-----CcEEEEEECCCC
Confidence 4678999999999999999999965321 112245788887776666643 137999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC------Cc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI------DK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~------~~ 153 (257)
++|..++..++..+|++++|+|+++ +|+.+.+.++..++++.. ++ ..
T Consensus 146 e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~-g~~~~~~~~~ 224 (587)
T TIGR00487 146 EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEY-GLVPEDWGGD 224 (587)
T ss_pred cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHh-hhhHHhcCCC
Confidence 9999999999999999999999885 788766666666655432 21 12
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcch-----hhhcceeeEeeecccchhhHHHHHH
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPI-----ARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
.+++++||++|.|+++++++|........+. .....+....+ .+.++.+..|.+.+|....++.++.
T Consensus 225 ~~~v~iSAktGeGI~eLl~~I~~~~~~~~l~---~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~ 296 (587)
T TIGR00487 225 TIFVPVSALTGDGIDELLDMILLQSEVEELK---ANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVV 296 (587)
T ss_pred ceEEEEECCCCCChHHHHHhhhhhhhhcccc---CCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEE
Confidence 4699999999999999999886422111111 01111222222 2335666778888887777776643
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-21 Score=164.15 Aligned_cols=173 Identities=21% Similarity=0.285 Sum_probs=137.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
.|+..||.++|||||+.++.+. ..|..+++.++|+|++..+....... +.+.|||+|||++|.
T Consensus 2 ii~t~GhidHgkT~L~~altg~-----------~~d~l~EekKRG~TiDlg~~y~~~~d------~~~~fIDvpgh~~~i 64 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG-----------VTDRLPEEKKRGITIDLGFYYRKLED------GVMGFIDVPGHPDFI 64 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc-----------ccccchhhhhcCceEeeeeEeccCCC------CceEEeeCCCcHHHH
Confidence 4889999999999999999442 46889999999999999888877665 689999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------cCCCCC-CHHHHHHHHHHHhCCCccceEEecc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA-NPEACEEQLQTLFNIDKKSVLRIWH 161 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~-~~~~~~~~~~~~~~~~~~~~i~iSa 161 (257)
.++..++...|+++||||+++ +|+.+. ..+...+++...+.+...++|++|+
T Consensus 65 ~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~ 144 (447)
T COG3276 65 SNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSA 144 (447)
T ss_pred HHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhccccccccccccc
Confidence 999999999999999999976 555432 2444555665556677788999999
Q ss_pred cccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHHHHHh
Q psy12244 162 RRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 162 ~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
++|+||++|.+.|..++ + .+.+....++.+++++. .+.++.|.+-+|++...|.++..
T Consensus 145 ~~g~GI~~Lk~~l~~L~--~---~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~ 207 (447)
T COG3276 145 KTGRGIEELKNELIDLL--E---EIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLS 207 (447)
T ss_pred ccCCCHHHHHHHHHHhh--h---hhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEe
Confidence 99999999999988543 1 23444555566766653 56677888889999888887554
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-20 Score=170.55 Aligned_cols=180 Identities=23% Similarity=0.324 Sum_probs=123.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.++++|+++|++|+|||||+++|+..... ....+|+|.......+.+.. ++....++|||||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~--------------~~e~~GiTq~i~~~~v~~~~--~~~~~kItfiDTPGh 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA--------------QKEAGGITQKIGAYEVEFEY--KDENQKIVFLDTPGH 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc--------------cccCCccccccceEEEEEEe--cCCceEEEEEECCcH
Confidence 57789999999999999999999764332 12235777776666655543 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHH------hCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTL------FNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~------~~~~~ 153 (257)
+.|..++..++..+|++|||||+++ +|+...+.+.+.+++... ++ ..
T Consensus 306 e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g-~~ 384 (742)
T CHL00189 306 EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWG-GD 384 (742)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhC-CC
Confidence 9999999999999999999999876 788766666555555432 11 23
Q ss_pred cceEEecccccccccccccccCCCcccCCCC-CCCCCCCC-CCCcchhhhcceeeEeeecccchhhHHHHH
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLA-KPDSKATP-YEDIPIARIRNFSIIAHVDHGKSTLADRLL 222 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~ 222 (257)
.+++++||++|.|+++|++.|..+.....+. .+...... ......+..++.+..+.+.+|....++.++
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv 455 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIV 455 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEE
Confidence 5799999999999999999887542111111 11110000 001122345666777777788777666653
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=169.31 Aligned_cols=137 Identities=35% Similarity=0.514 Sum_probs=118.5
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLN 98 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 98 (257)
++.++++||+|+||+|+|||||+++|++..+.+... +..+++|..+.|+++|+|++.....+.|.+ ++++
T Consensus 3 ~~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~------~~i~ 76 (691)
T PRK12739 3 FPLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG------HRIN 76 (691)
T ss_pred CCccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC------EEEE
Confidence 356789999999999999999999999877765332 457899999999999999999999999977 8999
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCC
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
|||||||.+|..++..+++.+|++|+|+|+.. +|+..++..+..+++++.++..
T Consensus 77 liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~ 156 (691)
T PRK12739 77 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGAN 156 (691)
T ss_pred EEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999986 8888778888889998888654
Q ss_pred cc-ceEEecccccc
Q psy12244 153 KK-SVLRIWHRRCF 165 (257)
Q Consensus 153 ~~-~~i~iSa~~g~ 165 (257)
.. ..+|+|+..+.
T Consensus 157 ~~~~~iPis~~~~f 170 (691)
T PRK12739 157 AVPIQLPIGAEDDF 170 (691)
T ss_pred ceeEEecccccccc
Confidence 33 35789987764
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-20 Score=151.26 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=107.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec------------------ccC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS------------------ILD 91 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~------------------~~~ 91 (257)
+|+++|+.++|||||+++|....-..........++.+++|.++|.|.......+.+.. .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 48899999999999999997522211111334567888999999988653332222111 112
Q ss_pred CccEEEEEeCCCCCcccHHHHHHhhh--hcceEEEEEecCc--------------------------cCCCCC-CHHHHH
Q psy12244 92 GEEYLLNLIDTPGHVDFSNEVTRSLA--ACQGVVLLIDANQ--------------------------VDLKNA-NPEACE 142 (257)
Q Consensus 92 ~~~~~~~liDtpG~~~~~~~~~~~~~--~aD~~ilVvd~~~--------------------------~D~~~~-~~~~~~ 142 (257)
...+.++|+|||||++|.+.+..++. .+|++++|+|+.. +|+... ...+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~ 160 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETL 160 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHH
Confidence 23478999999999999999998886 7999999999976 676443 245666
Q ss_pred HHHHHHhCC--------------------------CccceEEecccccccccccccccCCCc
Q psy12244 143 EQLQTLFNI--------------------------DKKSVLRIWHRRCFSCADCHRSLDSTN 178 (257)
Q Consensus 143 ~~~~~~~~~--------------------------~~~~~i~iSa~~g~gi~~l~~~i~~~~ 178 (257)
+++++.+.. ...|+|++||++|+|+++|.++|..+|
T Consensus 161 ~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~lp 222 (224)
T cd04165 161 KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLLP 222 (224)
T ss_pred HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhcC
Confidence 666665531 124899999999999999999998654
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=169.77 Aligned_cols=184 Identities=16% Similarity=0.228 Sum_probs=121.9
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
.....++|+|+|++|+|||||+|+|++....+. +...|+|.+.......+.+ ..+.+||||
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-------------~~~pGvT~d~~~~~~~~~~------~~~~liDT~ 331 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVV-------------EDTPGVTRDRVSYDAEWAG------TDFKLVDTG 331 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceee-------------cCCCCeeEEEEEEEEEECC------EEEEEEeCC
Confidence 344567899999999999999999986443322 2246778777666666655 789999999
Q ss_pred CCcc--------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 104 GHVD--------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 104 G~~~--------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
|+.. +...+..++..+|++|+|+|+.. +|+.... ....+++
T Consensus 332 G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~-----~~~~~~~ 406 (712)
T PRK09518 332 GWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE-----YDAAEFW 406 (712)
T ss_pred CcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch-----hhHHHHH
Confidence 9763 45556677899999999999976 4543211 1112222
Q ss_pred CCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcc
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVL 229 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~ 229 (257)
......++++||++|.|+++|++.|...... . .... . ........+++++|+.++||+++.++++.....+.
T Consensus 407 ~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~-~----~~~~-~--a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v 478 (712)
T PRK09518 407 KLGLGEPYPISAMHGRGVGDLLDEALDSLKV-A----EKTS-G--FLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVV 478 (712)
T ss_pred HcCCCCeEEEECCCCCCchHHHHHHHHhccc-c----cccc-c--ccCCCCCcEEEEECCCCCCHHHHHHHHhCcccccc
Confidence 1222246899999999999999888743211 0 0000 0 00011246899999999999999999987654333
Q ss_pred cCCCccccCC
Q psy12244 230 SSGSSQVLDS 239 (257)
Q Consensus 230 ~~g~~~~~d~ 239 (257)
..-.+++.|.
T Consensus 479 ~~~~gtT~d~ 488 (712)
T PRK09518 479 NDLAGTTRDP 488 (712)
T ss_pred CCCCCCCcCc
Confidence 3233444443
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=165.41 Aligned_cols=124 Identities=41% Similarity=0.654 Sum_probs=114.0
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
.++.+||+|+||.++|||||..+|+..+|.+.+. .+..++|+...|++||+|+......+.|.+ .+.++||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-----~~~iNlI 81 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-----DYRINLI 81 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-----ceEEEEe
Confidence 5789999999999999999999999999998875 556699999999999999999999999973 3899999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
|||||.||...+.++++.+|++++|+|+.. ||+..+++....++++..++...
T Consensus 82 DTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~ 160 (697)
T COG0480 82 DTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANP 160 (697)
T ss_pred CCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCc
Confidence 999999999999999999999999999998 99999999999999999886543
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-20 Score=163.09 Aligned_cols=132 Identities=27% Similarity=0.347 Sum_probs=109.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+++.|.|+||+++|||||+..|.+...+. ....|+|...+.+.+.+.. ...++|+|||||
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA--------------~E~GGITQhIGAF~V~~p~-----G~~iTFLDTPGH 211 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAA--------------GEAGGITQHIGAFTVTLPS-----GKSITFLDTPGH 211 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceeh--------------hhcCCccceeceEEEecCC-----CCEEEEecCCcH
Confidence 478899999999999999999996544332 2246788887777776642 278999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHH------hCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTL------FNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~------~~~~~ 153 (257)
.-|..+..+++..+|.++|||.+.+ ||+++++++++.+++... +| ..
T Consensus 212 aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~G-Gd 290 (683)
T KOG1145|consen 212 AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLG-GD 290 (683)
T ss_pred HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcC-Cc
Confidence 9999999999999999999999998 999999999998887653 22 23
Q ss_pred cceEEecccccccccccccccCCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
.+++|+||++|+|++.|.+.+..+
T Consensus 291 VQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 291 VQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred eeEEEeecccCCChHHHHHHHHHH
Confidence 578999999999999998888744
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-19 Score=140.57 Aligned_cols=141 Identities=34% Similarity=0.535 Sum_probs=107.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+|+++|.+|+|||||+|+|++........ ......+....+..+++|.......+.+.. ..+.||||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~liDtpG~~~ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD------RRVNFIDTPGHED 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC------EEEEEEeCCCcHH
Confidence 58999999999999999998876554332 111345566677788888876666666554 7899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCC-CCHHHHHHHHHHHhCC---------
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKN-ANPEACEEQLQTLFNI--------- 151 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~-~~~~~~~~~~~~~~~~--------- 151 (257)
+...+..+++.+|++++|+|+.. +|+.. .......+++++.+..
T Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 75 FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 99999999999999999999975 66653 3344555555555422
Q ss_pred -----CccceEEecccccccccccccccCC
Q psy12244 152 -----DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 -----~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+++++||++|.|+++++++|..
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 3467999999999999999988773
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=169.88 Aligned_cols=121 Identities=40% Similarity=0.650 Sum_probs=102.3
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLN 98 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 98 (257)
++.++.+||+|+|+.|+|||||+++|++..+.+... ...+.+|..+.|+++++|+......+.|.. +.++
T Consensus 3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~------~~i~ 76 (687)
T PRK13351 3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN------HRIN 76 (687)
T ss_pred CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC------EEEE
Confidence 456788999999999999999999999877665433 245678899999999999999888888876 8999
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
|||||||.+|...+..+++.+|++++|+|++. +|+..+++....+++++.+
T Consensus 77 liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l 153 (687)
T PRK13351 77 LIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERF 153 (687)
T ss_pred EEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 7777666666666665543
|
|
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-20 Score=157.35 Aligned_cols=198 Identities=24% Similarity=0.274 Sum_probs=156.6
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASL 84 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~ 84 (257)
..+.....|++++||+++||||+-+.|+...+..+.. ...|.+|...++++.|-|+..+.+.+
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 4445677899999999999999999998888777655 56889999999999999999999988
Q ss_pred EeecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------
Q psy12244 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------------- 130 (257)
Q Consensus 85 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------- 130 (257)
+... ..+++.|+|||..|..+++.++.+||+.++|+.+..
T Consensus 153 Ete~------~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNK 226 (501)
T KOG0459|consen 153 ETEN------KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK 226 (501)
T ss_pred Eecc------eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEe
Confidence 8766 899999999999999999999999999999999976
Q ss_pred cCCC-----CCCHHHHHHHHHHHh---CCC---ccceEEecccccccccccccccCCCcccCCCC---------CCCCCC
Q psy12244 131 VDLK-----NANPEACEEQLQTLF---NID---KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLA---------KPDSKA 190 (257)
Q Consensus 131 ~D~~-----~~~~~~~~~~~~~~~---~~~---~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~---------~~~~~~ 190 (257)
||-+ ..+++++.+.+..++ |+. ...++|+|+.+|.|+.+.... ..|||.+.. ..++..
T Consensus 227 MddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s--~cpwy~gp~fl~~ld~l~~~~R~~ 304 (501)
T KOG0459|consen 227 MDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDS--VCPWYKGPIFLEYLDELPHLERIL 304 (501)
T ss_pred ccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccc--cCCcccCCccceehhccCcccccC
Confidence 4442 233566666666554 443 335899999999999998873 348877632 234444
Q ss_pred CCCCCcchhh---hcceeeEeeecccchhhHHHHHHhhCC
Q psy12244 191 TPYEDIPIAR---IRNFSIIAHVDHGKSTLADRLLEMTGT 227 (257)
Q Consensus 191 ~~~~~~~~~~---~~~~~~~G~v~~Gk~~~~~~i~~~~g~ 227 (257)
..+..+|+.+ ..+.++.|++.+|+.+.++.++..+..
T Consensus 305 ~GP~~~pI~~KykdmGTvv~GKvEsGsi~kg~~lvvMPnk 344 (501)
T KOG0459|consen 305 NGPIRCPVANKYKDMGTVVGGKVESGSIKKGQQLVVMPNK 344 (501)
T ss_pred CCCEEeehhhhccccceEEEEEecccceecCCeEEEccCC
Confidence 4555666543 356788999999999999988777653
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=141.84 Aligned_cols=102 Identities=53% Similarity=0.859 Sum_probs=86.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecc----cCCccEEEEEeCC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSI----LDGEEYLLNLIDT 102 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----~~~~~~~~~liDt 102 (257)
|||+++||+++|||||+++|+...+.+... ...+++|..+.|+++|+|+......+.|... .++..+.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 589999999999999999999988766543 3456789999999999999987777777530 0134689999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|||.+|...+..+++.+|++++|+|+..
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~ 108 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVE 108 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCC
Confidence 9999999999999999999999999985
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=146.66 Aligned_cols=143 Identities=26% Similarity=0.338 Sum_probs=119.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
||+++|++|+|||||+++|++..+.+.+. ...++.|..+.++.+++|+......+.|.+ +.+++|||||+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~------~~i~liDtPG~ 74 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG------HKINLIDTPGY 74 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC------EEEEEEECcCH
Confidence 58999999999999999999877665433 456778889999999999988888888876 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEe
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 159 (257)
.+|...+..+++.+|++++|+|++. +|+...+.++..+++++.++.... .+.+
T Consensus 75 ~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~-~~~i 153 (268)
T cd04170 75 ADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVV-PLQL 153 (268)
T ss_pred HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeE-EEEe
Confidence 9999999999999999999999987 788777788888899888765433 3456
Q ss_pred cccccccccccccccCCCcc
Q psy12244 160 WHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~~~~~ 179 (257)
+..+|.|+..+.+.+....|
T Consensus 154 p~~~~~~~~~~vd~~~~~~~ 173 (268)
T cd04170 154 PIGEGDDFKGVVDLLTEKAY 173 (268)
T ss_pred cccCCCceeEEEEcccCEEE
Confidence 78899999888888775544
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=147.62 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=91.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+.--|+|+|+||+|||||+|+|++...++.+. ....|.....+.+... ..++.|+||||..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~-------------k~QTTR~~I~GI~t~~------~~QiIfvDTPGih 65 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSP-------------KPQTTRNRIRGIVTTD------NAQIIFVDTPGIH 65 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecC-------------CcchhhhheeEEEEcC------CceEEEEeCCCCC
Confidence 44569999999999999999999988887655 3333433333333333 4899999999975
Q ss_pred c--------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCH--HHHHHHHHHHhC
Q psy12244 107 D--------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANP--EACEEQLQTLFN 150 (257)
Q Consensus 107 ~--------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~--~~~~~~~~~~~~ 150 (257)
. +.+....++..+|+++||+|+.+ +|+...+. ....+.+...
T Consensus 66 ~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~-- 143 (298)
T COG1159 66 KPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKL-- 143 (298)
T ss_pred CcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhh--
Confidence 4 45556678889999999999998 56543322 2223333333
Q ss_pred CCccceEEecccccccccccccccC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+...++|+||++|.|++.|.+.+.
T Consensus 144 ~~f~~ivpiSA~~g~n~~~L~~~i~ 168 (298)
T COG1159 144 LPFKEIVPISALKGDNVDTLLEIIK 168 (298)
T ss_pred CCcceEEEeeccccCCHHHHHHHHH
Confidence 2334799999999999999887776
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-19 Score=148.48 Aligned_cols=185 Identities=24% Similarity=0.369 Sum_probs=124.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....||+.+||+++|||||..++..-....... ..+.-.|.-++|+.+|+|++.. .++|.. ...++.-+|||
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~a--HveYeT----a~RhYaH~DCP 125 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAA--HVEYET----AKRHYAHTDCP 125 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeee--eeeeec----cccccccCCCC
Confidence 345699999999999999999986533222111 3344568889999999999754 444433 22677799999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCC-CC-HHHHHHHHHHH---hCC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKN-AN-PEACEEQLQTL---FNI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~-~~-~~~~~~~~~~~---~~~ 151 (257)
||.||.++|+.+..+.|++||||.+++ .|+.+ .+ .+-+.-++++. +|+
T Consensus 126 GHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 126 GHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred chHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998 55542 22 22223344444 355
Q ss_pred C--ccceEEecccc---cc----cccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhh
Q psy12244 152 D--KKSVLRIWHRR---CF----SCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTL 217 (257)
Q Consensus 152 ~--~~~~i~iSa~~---g~----gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~ 217 (257)
+ ..|+|.-||+. |. |.+.+.+.++ +....++.|.+....++.+|+.+. |+.++.|++..|-...
T Consensus 206 ~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLld--avDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKk 283 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEGRQPEIGLEAIEKLLD--AVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKK 283 (449)
T ss_pred CCCCCCeeecchhhhhcCCCccccHHHHHHHHH--HHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeeccccc
Confidence 4 46888777654 43 2222222222 233567888888888888888775 5555666666654433
Q ss_pred H
Q psy12244 218 A 218 (257)
Q Consensus 218 ~ 218 (257)
+
T Consensus 284 G 284 (449)
T KOG0460|consen 284 G 284 (449)
T ss_pred C
Confidence 3
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-18 Score=154.45 Aligned_cols=128 Identities=30% Similarity=0.555 Sum_probs=110.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.+.++|+|+||+|+|||||+++|++..+.+... .....+|+.+.|+++|+|+......+.|.+ +.+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~------~~i 82 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD------CLV 82 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC------eEE
Confidence 578999999999999999999999877776432 123678999999999999998888888877 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
+|||||||.+|...+..+++.+|++|+|+|+.. +|+...+..++.++++..++.
T Consensus 83 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 83 NLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred EEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999986 788777888899999998876
Q ss_pred Cccc-eEEe
Q psy12244 152 DKKS-VLRI 159 (257)
Q Consensus 152 ~~~~-~i~i 159 (257)
...+ .+|+
T Consensus 163 ~~~~~~~PI 171 (527)
T TIGR00503 163 NCAPITWPI 171 (527)
T ss_pred CCccEEEEe
Confidence 6544 4676
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=144.89 Aligned_cols=182 Identities=21% Similarity=0.342 Sum_probs=134.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec---ccCCccEEEEEeCCCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS---ILDGEEYLLNLIDTPG 104 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~~~~~~~~~liDtpG 104 (257)
..|++++||+++|||||..+|.... .+...|.++.+.++|+|.+.++..+.... ++.++..+++|+|+||
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~-------STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPG 79 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELG-------STAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPG 79 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhc-------cchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCC
Confidence 3789999999999999999996532 23467888999999999998877665432 2456678999999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc--------------------------cCC-CCCC----HHHHHHHHHHHh---C
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDL-KNAN----PEACEEQLQTLF---N 150 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~-~~~~----~~~~~~~~~~~~---~ 150 (257)
|......++.+....|+.++|+|+.. +|. ++.. .++....+++-+ +
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998 444 3322 233333444444 3
Q ss_pred CCc-cceEEeccccc----ccccccccccCCCcccCCCCCCCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHH
Q psy12244 151 IDK-KSVLRIWHRRC----FSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADR 220 (257)
Q Consensus 151 ~~~-~~~i~iSa~~g----~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~ 220 (257)
+.. .|++++||+.| +++.+|.+.|.+ .+-.|.+++..++-|.++.. .+.++.|.+-+|+..+.+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s-----~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~ 234 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALES-----RIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTE 234 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHH-----hhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcE
Confidence 433 79999999999 888888887773 33335565555555665543 4556677777777776665
Q ss_pred H
Q psy12244 221 L 221 (257)
Q Consensus 221 i 221 (257)
+
T Consensus 235 i 235 (522)
T KOG0461|consen 235 I 235 (522)
T ss_pred E
Confidence 4
|
|
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-19 Score=137.10 Aligned_cols=131 Identities=16% Similarity=0.188 Sum_probs=95.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|..++|||||+-|+.. +.+.+..++ |+...+....+.- ++...+|.+|||+|++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk--------------~~F~e~~e~--TIGaaF~tktv~~--~~~~ikfeIWDTAGQE 65 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVK--------------DQFHENIEP--TIGAAFLTKTVTV--DDNTIKFEIWDTAGQE 65 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhh--------------Ccccccccc--ccccEEEEEEEEe--CCcEEEEEEEEcCCcc
Confidence 446899999999999999999954 222222233 3333333333332 5567899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
+|......+++.|+++|+|+|.++ +|+.+. .+...++.+.+.......+
T Consensus 66 Ry~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~-R~V~~~ea~~yAe~~gll~ 144 (200)
T KOG0092|consen 66 RYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER-REVEFEEAQAYAESQGLLF 144 (200)
T ss_pred cccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc-ccccHHHHHHHHHhcCCEE
Confidence 999999999999999999999998 566442 1222333344443445679
Q ss_pred EEecccccccccccccccCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++|||+|.|++++|..|.+
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~ 164 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAE 164 (200)
T ss_pred EEEecccccCHHHHHHHHHH
Confidence 99999999999999988874
|
|
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.3e-19 Score=134.81 Aligned_cols=131 Identities=18% Similarity=0.257 Sum_probs=97.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|..|+|||.|+-+|.. +.+.++....+.++.....+.+ +++..++++|||+|+
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~--------------~~f~e~~~sTIGVDf~~rt~e~----~gk~iKlQIWDTAGQ 68 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKD--------------DTFTESYISTIGVDFKIRTVEL----DGKTIKLQIWDTAGQ 68 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhcc--------------CCcchhhcceeeeEEEEEEeee----cceEEEEEeeecccc
Confidence 4678999999999999999999943 4455555555555554444544 667789999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
++|...+.++++.|+++|+|+|.+. +|+.+... ...++.+++......|
T Consensus 69 ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~-v~~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 69 ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRV-VSTEEAQEFADELGIP 147 (205)
T ss_pred HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhee-cCHHHHHHHHHhcCCc
Confidence 9999999999999999999999998 55543321 1112222322223344
Q ss_pred -eEEecccccccccccccccC
Q psy12244 156 -VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 -~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++|||.+.||++.|..|.
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la 168 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLA 168 (205)
T ss_pred ceeecccCCccCHHHHHHHHH
Confidence 99999999999999887775
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=134.85 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=90.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+........ . .......|+......+.+.. ..+.+|||||+..|.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~--------~--~~~~~~~t~~~~~~~~~~~~------~~~~l~Dt~G~~~~~ 64 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG--------L--PPSKITPTVGLNIGTIEVGN------ARLKFWDLGGQESLR 64 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC--------C--cccccCCccccceEEEEECC------EEEEEEECCCChhhH
Confidence 5899999999999999999764321000 0 00122334444455555554 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH---hCCCcc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL---FNIDKK 154 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~---~~~~~~ 154 (257)
..+...++.+|++++|+|+.+ +|+.... ..+..+.+... ++....
T Consensus 65 ~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T cd04160 65 SLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDC 144 (167)
T ss_pred HHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCce
Confidence 888899999999999999876 5654322 22222222221 123345
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 145 ~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 145 LVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred EEEEeeCCCCcCHHHHHHHHh
Confidence 799999999999999988775
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-19 Score=133.87 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=103.6
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
.......+++|.|+|.+|+|||||+|++.+.. .+++...|+...+...++.- +++...+.+|
T Consensus 2 ~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~k----------------F~~qykaTIgadFltKev~V--d~~~vtlQiW 63 (210)
T KOG0394|consen 2 SSLRKRTLLKVIILGDSGVGKTSLMNQYVNKK----------------FSQQYKATIGADFLTKEVQV--DDRSVTLQIW 63 (210)
T ss_pred CCcCcccceEEEEeCCCCccHHHHHHHHHHHH----------------HHHHhccccchhheeeEEEE--cCeEEEEEEE
Confidence 33344567899999999999999999997632 23344445544444433333 5667889999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC-HHHHHHHH
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN-PEACEEQL 145 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~-~~~~~~~~ 145 (257)
||+|+++|.......++.||++++|+|.+. +|+.+.. .....+..
T Consensus 64 DTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A 143 (210)
T KOG0394|consen 64 DTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA 143 (210)
T ss_pred ecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHH
Confidence 999999999998889999999999999987 6665422 33344444
Q ss_pred HHHh-CCCccceEEecccccccccccccccCCCcc
Q psy12244 146 QTLF-NIDKKSVLRIWHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 146 ~~~~-~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~ 179 (257)
++.. ....+|+|++|||.+.||++.|+.+.+.++
T Consensus 144 q~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 144 QTWCKSKGNIPYFETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred HHHHHhcCCceeEEecccccccHHHHHHHHHHHHH
Confidence 4444 234678999999999999999988875443
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=153.71 Aligned_cols=123 Identities=34% Similarity=0.629 Sum_probs=106.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.+.+||+|+||+|+|||||+++|++..+.+... .....+|+.+.|+++|+|+......+.|++ +.+
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~------~~i 81 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD------CLI 81 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC------EEE
Confidence 578999999999999999999999877766433 122457899999999999998888888877 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
++||||||.+|...+..+++.+|++|+|+|+.. +|+..++..+..+++++.++.
T Consensus 82 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 82 NLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred EEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999976 788777888888889888876
Q ss_pred Ccc
Q psy12244 152 DKK 154 (257)
Q Consensus 152 ~~~ 154 (257)
...
T Consensus 162 ~~~ 164 (526)
T PRK00741 162 ACA 164 (526)
T ss_pred CCe
Confidence 543
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-18 Score=133.86 Aligned_cols=131 Identities=24% Similarity=0.306 Sum_probs=92.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+.|+++|++|+|||||+++|+..... .....+.|.......+.+.. .....+.+|||||+..|
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~--------------~~~~~~~t~~~~~~~~~~~~---~~~~~~~iiDtpG~~~~ 63 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA--------------AGEAGGITQHIGAFEVPAEV---LKIPGITFIDTPGHEAF 63 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc--------------cccCCCeEEeeccEEEeccc---CCcceEEEEeCCCcHHH
Confidence 36999999999999999999753211 11223455554444444320 12368999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC------CCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN------IDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~------~~~~~~ 156 (257)
...+..++..+|++++|+|++. +|+...+.+...+.+..... ....++
T Consensus 64 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (168)
T cd01887 64 TNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQI 143 (168)
T ss_pred HHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcE
Confidence 8888888999999999999975 67654444444444433211 123579
Q ss_pred EEecccccccccccccccCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++||++|.|+++++++|.+
T Consensus 144 ~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T cd01887 144 VPTSAKTGEGIDDLLEAILL 163 (168)
T ss_pred EEeecccCCCHHHHHHHHHH
Confidence 99999999999999988874
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=146.68 Aligned_cols=138 Identities=33% Similarity=0.561 Sum_probs=117.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.+.++.+|+-||++|||||.+.|+..-+++... ......|+...|+++|+++.....++.|.+ +.+
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~------~~i 83 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD------CLV 83 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC------eEE
Confidence 467889999999999999999999877777443 456678999999999999999999999988 999
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
+|+|||||+||...+.+.+..+|.+++|+|+.. +|....++-+.++++.+.+++
T Consensus 84 NLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 84 NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred eccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998 788777888999999999988
Q ss_pred Cccce-EEec-ccccccccc
Q psy12244 152 DKKSV-LRIW-HRRCFSCAD 169 (257)
Q Consensus 152 ~~~~~-i~iS-a~~g~gi~~ 169 (257)
...|+ -||. ++.-.|+-.
T Consensus 164 ~~~PitWPIG~gk~F~Gvy~ 183 (528)
T COG4108 164 QCAPITWPIGMGKDFKGVYH 183 (528)
T ss_pred ceecccccccCCcccceeee
Confidence 76654 2443 444445533
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-19 Score=133.96 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=83.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+|+|++....+ ..-+|.|++.....+.+.+ ..+.|+|+||..++.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v--------------~n~pG~Tv~~~~g~~~~~~------~~~~lvDlPG~ysl~ 61 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKV--------------GNWPGTTVEKKEGIFKLGD------QQVELVDLPGIYSLS 61 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEE--------------EESTTSSSEEEEEEEEETT------EEEEEEE----SSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcee--------------cCCCCCCeeeeeEEEEecC------ceEEEEECCCcccCC
Confidence 69999999999999999998755332 2247888888888888766 899999999964421
Q ss_pred ------HHHHHhh--hhcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhCCCccce
Q psy12244 110 ------NEVTRSL--AACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 110 ------~~~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~~~~~~~ 156 (257)
.....++ ..+|++++|+|++. +|.... ....-.+.+.+.++ +|+
T Consensus 62 ~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg---~pv 138 (156)
T PF02421_consen 62 SKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG---VPV 138 (156)
T ss_dssp SSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT---S-E
T ss_pred CCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC---CCE
Confidence 1122333 57999999999998 333111 11112445666665 469
Q ss_pred EEeccccccccccccccc
Q psy12244 157 LRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i 174 (257)
+++||++|+|+++|++.|
T Consensus 139 i~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 139 IPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEBTTTTBTHHHHHHHH
T ss_pred EEEEeCCCcCHHHHHhhC
Confidence 999999999999987653
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-18 Score=133.10 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=87.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+++|++.... ....|.......+.+.. ..+.+|||||+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-----------------~~~~t~g~~~~~~~~~~------~~l~l~D~~G~ 68 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-----------------TISPTLGFQIKTLEYEG------YKLNIWDVGGQ 68 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-----------------CcCCccccceEEEEECC------EEEEEEECCCC
Confidence 34568999999999999999999653110 00112222223333433 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhC----
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFN---- 150 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~---- 150 (257)
+.|...+...++.+|++++|+|+++ +|+.+.. ..+++.+.++
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~ 145 (173)
T cd04154 69 KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL---SEEEIREALELDKI 145 (173)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC---CHHHHHHHhCcccc
Confidence 9998888889999999999999987 5654322 1223333332
Q ss_pred -CCccceEEecccccccccccccccC
Q psy12244 151 -IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 151 -~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
....++|++||++|.|++++++++.
T Consensus 146 ~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 146 SSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred CCCceEEEeccCCCCcCHHHHHHHHh
Confidence 2345799999999999999988764
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-18 Score=131.35 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=88.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+++|++|+|||||+++|+...- ..+.....+.+.....+.+ ++....+.+|||||++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~----~~~~~~l~i~D~~G~~ 63 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTF--------------SERQGNTIGVDFTMKTLEI----EGKRVKLQIWDTAGQE 63 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCC--------------cccCCCccceEEEEEEEEE----CCEEEEEEEEECCChH
Confidence 357899999999999999999964211 1111122222333333333 3344688999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+|...+...++.+|++++|+|+++ +|+.+.+ ..+....+.+.++ ..
T Consensus 64 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~ 141 (165)
T cd01864 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNG--ML 141 (165)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcC--Cc
Confidence 999888889999999999999998 6664322 1122223333333 23
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++.+.
T Consensus 142 ~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 142 AVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999988765
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=134.44 Aligned_cols=101 Identities=42% Similarity=0.654 Sum_probs=84.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCcccc-----CCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLS-----SGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~-----~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
|+|+++|++|+|||||+++|+...+.... ....+.+|..+.|+++|+|+......+.+... ++..+.+++||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-~~~~~~i~iiDtp 79 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-KGKSYLFNIIDTP 79 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC-CCCEEEEEEEECC
Confidence 57999999999999999999998776642 13455678888999999999877777766531 3455889999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
||.+|...+..++..+|++++|+|+..
T Consensus 80 G~~~f~~~~~~~~~~aD~~llVvD~~~ 106 (213)
T cd04167 80 GHVNFMDEVAAALRLSDGVVLVVDVVE 106 (213)
T ss_pred CCcchHHHHHHHHHhCCEEEEEEECCC
Confidence 999999999999999999999999976
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-18 Score=135.02 Aligned_cols=126 Identities=17% Similarity=0.277 Sum_probs=88.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
.|+++|..|+|||||+.+|+... +..+....++.+.....+.+ ++....+.+|||+|+++|.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--------------f~~~~~~Ti~~~~~~~~i~~----~~~~v~l~iwDtaGqe~~~ 63 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--------------FCEACKSGVGVDFKIKTVEL----RGKKIRLQIWDTAGQERFN 63 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--------------CCCcCCCcceeEEEEEEEEE----CCEEEEEEEEeCCCchhhH
Confidence 48999999999999999996521 11111223333433333443 4456889999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
..+..+++.+|++|+|+|.++ +|+.... .....+++.+.+ ...+++
T Consensus 64 ~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~--~~~~~~ 141 (202)
T cd04120 64 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQI--TGMRFC 141 (202)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhc--CCCEEE
Confidence 999999999999999999998 6664321 111122222221 234699
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.||+++|+++.
T Consensus 142 etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 142 EASAKDNFNVDEIFLKLV 159 (202)
T ss_pred EecCCCCCCHHHHHHHHH
Confidence 999999999999998776
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.3e-18 Score=128.97 Aligned_cols=128 Identities=15% Similarity=0.218 Sum_probs=95.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|..++|||||++++++.. +....+..+.++.-...+.+ .+..+.+.+|||+|++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~--------------fd~~YqATIGiDFlskt~~l----~d~~vrLQlWDTAGQE 82 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDK--------------FDNTYQATIGIDFLSKTMYL----EDRTVRLQLWDTAGQE 82 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhh--------------hcccccceeeeEEEEEEEEE----cCcEEEEEEEecccHH
Confidence 45789999999999999999998743 22223444555555555554 4567999999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC---HHHHHHHHHHHhCCC
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN---PEACEEQLQTLFNID 152 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~---~~~~~~~~~~~~~~~ 152 (257)
+|......+++.++++|+|+|.++ -|+.+.. .++-. ..++.++
T Consensus 83 RFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~-~kAkel~-- 159 (221)
T KOG0094|consen 83 RFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE-RKAKELN-- 159 (221)
T ss_pred HHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH-HHHHHhC--
Confidence 999999999999999999999998 4554332 11111 2222233
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..|+++||+.|.||..+|..|..
T Consensus 160 -a~f~etsak~g~NVk~lFrrIaa 182 (221)
T KOG0094|consen 160 -AEFIETSAKAGENVKQLFRRIAA 182 (221)
T ss_pred -cEEEEecccCCCCHHHHHHHHHH
Confidence 35899999999999999988763
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=143.90 Aligned_cols=130 Identities=19% Similarity=0.201 Sum_probs=87.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+|+|++....+.. ...+.|.+.....+.+.+ .++.||||||+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-------------~k~~tTr~~~~~~~~~~~------~qi~~~DTpG~ 110 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-------------PKVQTTRSIITGIITLKD------TQVILYDTPGI 110 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeecc-------------CCCCCccCcEEEEEEeCC------eEEEEEECCCc
Confidence 45568999999999999999999764433211 123445444444455544 68999999998
Q ss_pred cc--------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 106 VD--------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~--------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
.+ +......++..+|++++|+|+.. +|+......+..+.+... .
T Consensus 111 ~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~--~ 188 (339)
T PRK15494 111 FEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTEN--H 188 (339)
T ss_pred CCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhc--C
Confidence 53 22223345789999999999875 666433222222222221 2
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...++|++||++|.|+++++++|..
T Consensus 189 ~~~~i~~iSAktg~gv~eL~~~L~~ 213 (339)
T PRK15494 189 PDSLLFPISALSGKNIDGLLEYITS 213 (339)
T ss_pred CCcEEEEEeccCccCHHHHHHHHHH
Confidence 2356899999999999999988874
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=158.68 Aligned_cols=106 Identities=49% Similarity=0.777 Sum_probs=91.9
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecc----------cCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSI----------LDG 92 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----------~~~ 92 (257)
.++++||+|+||+|+|||||+++|++..+.+... ...+.+|..+.|+++|+|++.....+.|... ...
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 4689999999999999999999999988877655 4556689999999999999988888777420 123
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.++|||||||.+|..++..+++.+|++|+|||+..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~ 133 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC
Confidence 45889999999999999999999999999999999997
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=140.36 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=82.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc-
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF- 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~- 108 (257)
.|+++|++|+|||||+|+|++....+... ..+.|........... ..++.||||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~-------------~~~TTr~~i~~i~~~~------~~qii~vDTPG~~~~~ 62 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSP-------------KAQTTRNRISGIHTTG------ASQIIFIDTPGFHEKK 62 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCC-------------CCCcccCcEEEEEEcC------CcEEEEEECcCCCCCc
Confidence 48999999999999999998754332221 2333433222222221 257999999998542
Q ss_pred -------HHHHHHhhhhcceEEEEEecCc-------------------------cCCCCCCHHHHHHHHHHHhCC-Cccc
Q psy12244 109 -------SNEVTRSLAACQGVVLLIDANQ-------------------------VDLKNANPEACEEQLQTLFNI-DKKS 155 (257)
Q Consensus 109 -------~~~~~~~~~~aD~~ilVvd~~~-------------------------~D~~~~~~~~~~~~~~~~~~~-~~~~ 155 (257)
...+..++..+|++++|+|++. +|+.. .+...+.+...... ...+
T Consensus 63 ~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~ 140 (270)
T TIGR00436 63 HSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKD 140 (270)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCc
Confidence 2234567789999999999986 56532 22233333332221 2236
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+|++||++|.|+++|+++|..
T Consensus 141 v~~iSA~~g~gi~~L~~~l~~ 161 (270)
T TIGR00436 141 IVPISALTGDNTSFLAAFIEV 161 (270)
T ss_pred eEEEecCCCCCHHHHHHHHHH
Confidence 899999999999999888864
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=129.40 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=85.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+++|..... . ... .|.......+.+.. ..+.+|||||++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~--~-------------~~~--~t~g~~~~~~~~~~------~~~~l~Dt~G~~ 64 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQS--V-------------TTI--PTVGFNVETVTYKN------VKFNVWDVGGQD 64 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCC--c-------------ccc--CCcccceEEEEECC------EEEEEEECCCCH
Confidence 346899999999999999999953211 0 001 12222222233332 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC----
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI---- 151 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~---- 151 (257)
+|...+...++.+|++|+|+|+++ +|+.+.. ..+++++.++.
T Consensus 65 ~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~ 141 (168)
T cd04149 65 KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM---KPHEIQEKLGLTRIR 141 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC---CHHHHHHHcCCCccC
Confidence 998888889999999999999997 4543211 12334443322
Q ss_pred -CccceEEecccccccccccccccC
Q psy12244 152 -DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 -~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 142 ~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 142 DRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCcEEEEEeeCCCCCChHHHHHHHh
Confidence 123589999999999999998775
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.1e-18 Score=157.93 Aligned_cols=91 Identities=35% Similarity=0.610 Sum_probs=82.8
Q ss_pred EecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 34 IAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 34 vG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+||+|+|||||+++|++..+.+... ...+++|..+.|+++|+|+......+.|.+ +.++|||||||.+|.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~------~~i~liDtPG~~~~~ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG------HKINLIDTPGHVDFT 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC------EEEEEEECCCcHHHH
Confidence 6999999999999999988876543 345789999999999999999989998877 899999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+..++..+|++++|+|++.
T Consensus 75 ~~~~~~l~~aD~vllvvd~~~ 95 (668)
T PRK12740 75 GEVERALRVLDGAVVVVCAVG 95 (668)
T ss_pred HHHHHHHHHhCeEEEEEeCCC
Confidence 999999999999999999987
|
|
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=130.41 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=87.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+...- ..+..+..+.+.....+.+ .+....+.+|||||+++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f--------------~~~~~~t~~~~~~~~~~~~----~~~~~~l~l~D~~g~~~ 64 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF--------------NPSFISTIGIDFKIRTIEL----DGKKIKLQIWDTAGQER 64 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC--------------CcccccCccceEEEEEEEE----CCEEEEEEEEeCCchHH
Confidence 46899999999999999999975321 1111122222222223333 33447899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
|.......++.+|++++|+|+++ +|+.+.. ..+....+...+ ..+
T Consensus 65 ~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 141 (167)
T cd01867 65 FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEY---GIK 141 (167)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc---CCE
Confidence 98888888999999999999986 5664321 111122222222 246
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|++++++.+.
T Consensus 142 ~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 142 FLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999988776
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=128.21 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=82.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|........ ....|+......+.+.. ..+.+|||||+.+|.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~---------------~~~~t~g~~~~~~~~~~------~~~~l~Dt~G~~~~~ 59 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ---------------IIVPTVGFNVESFEKGN------LSFTAFDMSGQGKYR 59 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc---------------eecCccccceEEEEECC------EEEEEEECCCCHhhH
Confidence 489999999999999999965321000 01112222222233333 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCHHHHHHHHHHHhCCC----
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANPEACEEQLQTLFNID---- 152 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~~~~~~~~~~~~~~~---- 152 (257)
..+..+++.+|++|+|+|+++ +|+..... ..++...++..
T Consensus 60 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---~~~~~~~l~~~~~~~ 136 (162)
T cd04157 60 GLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---AVKITQLLGLENIKD 136 (162)
T ss_pred HHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC---HHHHHHHhCCccccC
Confidence 999999999999999999976 44433211 12222222221
Q ss_pred -ccceEEecccccccccccccccC
Q psy12244 153 -KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 -~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+++++||++|.|+++++++|.
T Consensus 137 ~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 137 KPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ceEEEEEeeCCCCCchHHHHHHHh
Confidence 23589999999999999998875
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=132.31 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=91.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|..++|||||+.+|.... +..+..+.++.+.....+.+ ++....+.||||||++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~--------------~~~~~~~t~~~~~~~~~i~~----~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGS--------------TESPYGYNMGIDYKTTTILL----DGRRVKLQLWDTSGQG 66 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC--------------CCCCCCCcceeEEEEEEEEE----CCEEEEEEEEeCCCcH
Confidence 45789999999999999999996421 11111122333332333333 4455889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
+|...+..+++.+|++|||+|.++ +|+.+.. ..+..+.+.+.. ..+
T Consensus 67 ~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~---~~~ 143 (189)
T cd04121 67 RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERN---GMT 143 (189)
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHc---CCE
Confidence 999988889999999999999998 6664321 122222333322 356
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.||+++|++|.+
T Consensus 144 ~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 144 FFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEEecCCCCCCHHHHHHHHHH
Confidence 999999999999999998874
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-17 Score=142.89 Aligned_cols=130 Identities=20% Similarity=0.247 Sum_probs=106.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
.+.+|+|+|+||+|||||+|+|++....+... ..|.|++.....+++++ ..+.+|||+|..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-------------~aGTTRD~I~~~~e~~~------~~~~liDTAGiR 237 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-------------IAGTTRDSIDIEFERDG------RKYVLIDTAGIR 237 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-------------CCCccccceeeeEEECC------eEEEEEECCCCC
Confidence 57889999999999999999999988777654 67899999888899887 889999999975
Q ss_pred c----------c-HHHHHHhhhhcceEEEEEecCc--------------------------cCCCCC---CHHHHHHHHH
Q psy12244 107 D----------F-SNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNA---NPEACEEQLQ 146 (257)
Q Consensus 107 ~----------~-~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~---~~~~~~~~~~ 146 (257)
+ | ...+..++..+|.+++|+|+.. .|+.+. ..+...+++.
T Consensus 238 rk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~ 317 (444)
T COG1160 238 RKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLR 317 (444)
T ss_pred cccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHH
Confidence 4 2 2335667889999999999998 666443 3556666777
Q ss_pred HHhC-CCccceEEecccccccccccccccC
Q psy12244 147 TLFN-IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 147 ~~~~-~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+. ...+|++++||++|.|+..+++.+.
T Consensus 318 ~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~ 347 (444)
T COG1160 318 RKLPFLDFAPIVFISALTGQGLDKLFEAIK 347 (444)
T ss_pred HHhccccCCeEEEEEecCCCChHHHHHHHH
Confidence 6663 4557899999999999999998886
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-17 Score=129.30 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=86.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+...-. .....+.+.+.....+.+ .+....+.+|||||+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~~~i~D~~G~~~ 63 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYT--------------ESYISTIGVDFKIRTIEL----DGKTIKLQIWDTAGQER 63 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeEEEEEEEE----CCEEEEEEEEECCCcHh
Confidence 368999999999999999999753211 011122222322233333 33447899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--HHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--EACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--~~~~~~~~~~~~~~~~~ 155 (257)
|.......++.+|++++|+|+++ +|+..... .+....+.+.+ ..+
T Consensus 64 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 140 (166)
T cd01869 64 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADEL---GIP 140 (166)
T ss_pred HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHc---CCe
Confidence 99888889999999999999987 44432210 11122223322 347
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|++++++.|.
T Consensus 141 ~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 141 FLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 99999999999999998775
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-17 Score=128.52 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=88.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+++|++..-. .+..++.+.+.....+.+ ++....+.+|||||+..+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~l~~~D~~G~~~~ 62 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD--------------NQYQATIGIDFLSKTMYL----EDKTVRLQLWDTAGQERF 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC--------------ccCCCceeeeEEEEEEEE----CCEEEEEEEEECCCcHHH
Confidence 37999999999999999999753221 122334444444444443 334467999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
...+...++.+|++++|+|+++ +|+.... ..+....+.+.. ..++
T Consensus 63 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~ 139 (161)
T cd01861 63 RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKEL---NAMF 139 (161)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHh---CCEE
Confidence 9888889999999999999986 5552211 111222222222 3568
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|+++++++|.
T Consensus 140 ~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 140 IETSAKAGHNVKELFRKIA 158 (161)
T ss_pred EEEeCCCCCCHHHHHHHHH
Confidence 9999999999999988775
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=129.33 Aligned_cols=126 Identities=18% Similarity=0.210 Sum_probs=86.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|+.|+|||||+++|+...- .. +..+.+..+.....+.. ++....+.+|||||++.|
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~------------~~~~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~ 64 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MA------------DCPHTIGVEFGTRIIEV----NGQKIKLQIWDTAGQERF 64 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CC------------CCCcccceeEEEEEEEE----CCEEEEEEEEECCCcHHH
Confidence 5799999999999999999965311 00 00111111222222222 344578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
...+...++.+|++|+|+|+++ +|+.... ..+...++.+.. ..++
T Consensus 65 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~ 141 (166)
T cd04122 65 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADEN---GLLF 141 (166)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHc---CCEE
Confidence 9988899999999999999997 6664322 111222222222 3579
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|++++++.+.
T Consensus 142 ~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 142 LECSAKTGENVEDAFLETA 160 (166)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999887665
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-17 Score=126.60 Aligned_cols=127 Identities=18% Similarity=0.260 Sum_probs=87.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|+..... .+..+.+..+.....+.+.. .+....+.+|||||+++|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT--------------KDYKKTIGVDFLEKQIFLRQ--SDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCcEEEEEEEEEEEEcC--CCCEEEEEEeeCCchHHHH
Confidence 6999999999999999999652210 11122233333223333332 2445789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCccceEE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVLR 158 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i~ 158 (257)
..+...++.+|++++|+|+++ +|+.... ..+..+.+.+.++ .++++
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~---~~~~~ 142 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ---LPLFR 142 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcC---CeEEE
Confidence 888889999999999999987 5553221 1122223333333 46999
Q ss_pred ecccccccccccccccC
Q psy12244 159 IWHRRCFSCADCHRSLD 175 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~ 175 (257)
+||++|.|+++++++|.
T Consensus 143 ~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 143 TSVKDDFNVTELFEYLA 159 (162)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999988765
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=127.11 Aligned_cols=126 Identities=14% Similarity=0.182 Sum_probs=86.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+++|++..-.. ...+..+.+.....+.. .+....+.+|||||+.+|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~g~~~~ 63 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--------------AFVSTVGIDFKVKTVFR----NDKRVKLQIWDTAGQERY 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCceeeEEEEEEEEE----CCEEEEEEEEECCChHHH
Confidence 579999999999999999996532110 00111111221122221 234478999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--HHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--EACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--~~~~~~~~~~~~~~~~~~ 156 (257)
...+...++.+|++++|+|.++ +|+.+... .+...++.+.++ .++
T Consensus 64 ~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 140 (165)
T cd01865 64 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLG---FEF 140 (165)
T ss_pred HHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC---CEE
Confidence 9888899999999999999987 66643321 122233344344 369
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|++++++.+.
T Consensus 141 ~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 141 FEASAKENINVKQVFERLV 159 (165)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999998876
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=152.77 Aligned_cols=182 Identities=21% Similarity=0.193 Sum_probs=109.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccC------------Ccc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILD------------GEE 94 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~------------~~~ 94 (257)
+++.|+++|++|+|||||+++|++..... ....++|...+...+.+..... ...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~--------------~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~ 68 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK--------------REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKI 68 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc--------------ccCCceecccCeeEeeecccccccccccccccccccc
Confidence 46789999999999999999997642211 1123355544444433321000 000
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCC-----------
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNAN----------- 137 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~----------- 137 (257)
..++|||||||+.|...+..+++.+|++++|+|+++ +|+....
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHH
Confidence 248899999999999999999999999999999974 6764210
Q ss_pred ----HHHHHH-----------HHHHHhCC------------CccceEEecccccccccccccccCCCcccCCCCCC-CCC
Q psy12244 138 ----PEACEE-----------QLQTLFNI------------DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKP-DSK 189 (257)
Q Consensus 138 ----~~~~~~-----------~~~~~~~~------------~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~-~~~ 189 (257)
...+.. ++.+ .++ ...+++|+||++|+|+++|.++|..+.. ..+... ...
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~-~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~-~~l~~~l~~~ 226 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHE-EGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ-QYLEEQLKLE 226 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHh-cCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH-HHhhhhhccC
Confidence 000100 1111 111 1357999999999999999987753211 001000 001
Q ss_pred CCCCCCcchh-----hhcceeeEeeecccchhhHHHHHHh
Q psy12244 190 ATPYEDIPIA-----RIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 190 ~~~~~~~~~~-----~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
...+..+++. +.++.++.|.+.+|....++.++..
T Consensus 227 ~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~ 266 (590)
T TIGR00491 227 EEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMA 266 (590)
T ss_pred CCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEc
Confidence 1122233332 2355667777888877777766543
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-17 Score=126.40 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=83.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++++|||||+++|...... .. ..|+......+.+.. ..+.+|||||+.+|.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~----------~~-------~~t~~~~~~~~~~~~------~~~~i~Dt~G~~~~~ 57 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV----------TT-------IPTIGFNVETVTYKN------LKFQVWDLGGQTSIR 57 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc----------Cc-------CCccCcCeEEEEECC------EEEEEEECCCCHHHH
Confidence 4899999999999999999542110 00 112222222333333 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC-----Cc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI-----DK 153 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~-----~~ 153 (257)
..+...+..+|++|+|+|+++ +|+.+... ..++...++. ..
T Consensus 58 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~ 134 (158)
T cd04151 58 PYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS---EAEISEKLGLSELKDRT 134 (158)
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC---HHHHHHHhCccccCCCc
Confidence 888889999999999999975 66543321 1222222221 12
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 135 ~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 135 WSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred EEEEEeeccCCCCHHHHHHHHh
Confidence 4699999999999999998875
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=125.99 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=82.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..++|||||+++|... .... ...|+......+.+.. ..+.+|||||+.+|.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~~~~---------------~~pt~g~~~~~~~~~~------~~~~l~D~~G~~~~~ 58 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--EIVT---------------TIPTIGFNVETVEYKN------ISFTVWDVGGQDKIR 58 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCcc---------------cCCCCCcceEEEEECC------EEEEEEECCCCHhHH
Confidence 6999999999999999999531 1100 0112222222233333 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC-----Cc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI-----DK 153 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~-----~~ 153 (257)
..+..+++.+|++|+|+|+++ +|+.+... .+++...++. ..
T Consensus 59 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~ 135 (159)
T cd04150 59 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLGLHSLRNRN 135 (159)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccccCCCC
Confidence 888899999999999999986 56543211 1222222222 12
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++++||++|.|+++++++|.
T Consensus 136 ~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 136 WYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred EEEEEeeCCCCCCHHHHHHHHh
Confidence 3478999999999999998775
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-17 Score=126.53 Aligned_cols=125 Identities=14% Similarity=0.207 Sum_probs=83.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|+...-. .........+.......+ ++....+.+|||||++.|.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~~ 63 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYE--------------PQQLSTYALTLYKHNAKF----EGKTILVDFWDTAGQERFQ 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------------CCcCCceeeEEEEEEEEE----CCEEEEEEEEeCCCchhhh
Confidence 6999999999999999999753211 011111111111111112 3455789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEec
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIW 160 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 160 (257)
..+..+++.+|++++|+|+++ +|+......+ ...+.+.. ..+++++|
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~---~~~~~~~S 139 (161)
T cd04124 64 TMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQK-KFNFAEKH---NLPLYYVS 139 (161)
T ss_pred hhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHH-HHHHHHHc---CCeEEEEe
Confidence 999999999999999999986 4442211111 11122222 35799999
Q ss_pred ccccccccccccccCC
Q psy12244 161 HRRCFSCADCHRSLDS 176 (257)
Q Consensus 161 a~~g~gi~~l~~~i~~ 176 (257)
|++|.|++++++.+..
T Consensus 140 a~~~~gv~~l~~~l~~ 155 (161)
T cd04124 140 AADGTNVVKLFQDAIK 155 (161)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999887763
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-17 Score=126.38 Aligned_cols=136 Identities=18% Similarity=0.255 Sum_probs=100.1
Q ss_pred CCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 20 ~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
|..-+.....+|+++|.++||||+|+-++....-. ......+.+++....+.. ++....+.+
T Consensus 4 ~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~--------------~~~~sTiGIDFk~kti~l----~g~~i~lQi 65 (207)
T KOG0078|consen 4 MAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFN--------------TSFISTIGIDFKIKTIEL----DGKKIKLQI 65 (207)
T ss_pred cccCCcceEEEEEEECCCCCchhHhhhhhhhccCc--------------CCccceEEEEEEEEEEEe----CCeEEEEEE
Confidence 33335678889999999999999999999653211 111233444444444444 556789999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHH
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQT 147 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~ 147 (257)
|||+|+++|...+..+++.|+++++|+|.+. +|+...+ ..+.-+.++.
T Consensus 66 WDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~ 145 (207)
T KOG0078|consen 66 WDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAR 145 (207)
T ss_pred EEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHH
Confidence 9999999999999999999999999999998 6664422 2333445555
Q ss_pred HhCCCccceEEecccccccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+|. +|+++||++|.||++.|-.|..
T Consensus 146 e~G~---~F~EtSAk~~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 146 EYGI---KFFETSAKTNFNIEEAFLSLAR 171 (207)
T ss_pred HhCC---eEEEccccCCCCHHHHHHHHHH
Confidence 5554 5999999999999998877763
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-17 Score=128.99 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=87.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|..++|||||+++|.. +.... ...|+......+.+.. ..+.+|||||+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~--~~~~~---------------~~pt~g~~~~~~~~~~------~~~~i~D~~Gq 71 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVT---------------TIPTIGFNVETVEYKN------ISFTVWDVGGQ 71 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc--CCCcc---------------ccCCcceeEEEEEECC------EEEEEEECCCC
Confidence 3446899999999999999999953 11100 1122222223344433 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCc-
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDK- 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~- 153 (257)
..|...+...++.+|++|+|+|+++ +|+.... ..+++.+.++...
T Consensus 72 ~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~l~l~~~ 148 (181)
T PLN00223 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSL 148 (181)
T ss_pred HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC---CHHHHHHHhCcccc
Confidence 9999999999999999999999996 5543321 1234555555432
Q ss_pred ----cceEEecccccccccccccccC
Q psy12244 154 ----KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ----~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++++||++|+|+++++++|.
T Consensus 149 ~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 149 RQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred CCCceEEEeccCCCCCCHHHHHHHHH
Confidence 2366899999999999998886
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-17 Score=126.18 Aligned_cols=124 Identities=16% Similarity=0.246 Sum_probs=85.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceE-eceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITV-KAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|.+|+|||||+++++...-. .. .. .|. +.....+.. ++....+.||||||+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~------------~~--~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EK------------YD--PTIEDSYRKQIEV----DGQQCMLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cc------------cC--CchhhhEEEEEEE----CCEEEEEEEEECCCccc
Confidence 57999999999999999999753210 00 00 111 111111222 34457889999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
|...+...++.+|++++|+|.++ +|+.+.. ..+....+.+.++ .
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 138 (163)
T cd04136 62 FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG---C 138 (163)
T ss_pred cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC---C
Confidence 99888889999999999999886 5653321 1112223333333 5
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++++.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 139 PFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred eEEEecCCCCCCHHHHHHHHH
Confidence 799999999999999998775
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-17 Score=127.81 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=86.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|+..... ....|.......+.+.. ..+.+|||||+.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~l~D~~G~~ 70 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVV-----------------HTSPTIGSNVEEIVYKN------IRFLMWDIGGQE 70 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC-----------------CcCCccccceEEEEECC------eEEEEEECCCCH
Confidence 3568999999999999999999642110 01123333333444443 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHHHHhCC---
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQTLFNI--- 151 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~~~~~~--- 151 (257)
.|...+...++.+|++++|+|+++ +|+.+. +.+ ++.+.++.
T Consensus 71 ~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~----~i~~~l~~~~~ 146 (174)
T cd04153 71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPA----EISESLGLTSI 146 (174)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHH----HHHHHhCcccc
Confidence 999888899999999999999986 454322 122 22233322
Q ss_pred --CccceEEecccccccccccccccC
Q psy12244 152 --DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 --~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 147 ~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 147 RDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred cCCceEEEecccCCCCCHHHHHHHHh
Confidence 224689999999999999998875
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-17 Score=154.87 Aligned_cols=104 Identities=49% Similarity=0.786 Sum_probs=91.5
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
.++++||+++||+++|||||+++|++..+.+... +..+++|..+.|+++|+|++.....+.|.. ++..+.++|+||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~--~~~~~~i~liDt 94 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY--EGKEYLINLIDT 94 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe--cCCcEEEEEEcC
Confidence 4678999999999999999999999988877654 346779999999999999998887777743 344589999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|||.+|...+..+++.+|++|+|+|+..
T Consensus 95 PG~~df~~~~~~~l~~~D~avlVvda~~ 122 (731)
T PRK07560 95 PGHVDFGGDVTRAMRAVDGAIVVVDAVE 122 (731)
T ss_pred CCccChHHHHHHHHHhcCEEEEEEECCC
Confidence 9999999999999999999999999987
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=128.17 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=84.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..++|||||+++|..... . ....|+......+.+.. ..+.+|||||+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~---------------~~~~T~~~~~~~~~~~~------~~i~l~Dt~G~~~~~ 57 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--M---------------QPIPTIGFNVETVEYKN------LKFTIWDVGGKHKLR 57 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--C---------------CcCCcCceeEEEEEECC------EEEEEEECCCChhcc
Confidence 489999999999999999965211 0 11123322233344433 789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCC------
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNID------ 152 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~------ 152 (257)
..+...++.+|++++|+|+++ +|+.... ..+++++.+...
T Consensus 58 ~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~ 134 (169)
T cd04158 58 PLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL---SVEEMTELLSLHKLCCGR 134 (169)
T ss_pred hHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC---CHHHHHHHhCCccccCCC
Confidence 888889999999999999977 4543221 122222222211
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...++++||++|.|+++++++|.+
T Consensus 135 ~~~~~~~Sa~~g~gv~~~f~~l~~ 158 (169)
T cd04158 135 SWYIQGCDARSGMGLYEGLDWLSR 158 (169)
T ss_pred cEEEEeCcCCCCCCHHHHHHHHHH
Confidence 235789999999999999998863
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-17 Score=128.66 Aligned_cols=126 Identities=15% Similarity=0.192 Sum_probs=86.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..++|||||+++++...- ..+..+.+..+.....+.+ .+....+.||||||+++|.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f--------------~~~~~~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~~ 63 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--------------DKNYKATIGVDFEMERFEI----LGVPFSLQLWDTAGQERFK 63 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--------------CCCCCCceeeEEEEEEEEE----CCEEEEEEEEeCCChHHHH
Confidence 589999999999999999975311 1111222222322233333 3445789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH----HHHHHHHHHHhCCCcc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP----EACEEQLQTLFNIDKK 154 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~----~~~~~~~~~~~~~~~~ 154 (257)
..+...++.+|++++|+|+++ +|+.+.+. +.....+.+.++ .
T Consensus 64 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~---~ 140 (170)
T cd04108 64 CIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ---A 140 (170)
T ss_pred hhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC---C
Confidence 888889999999999999987 55533211 111112222222 4
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.|++++++.|..
T Consensus 141 ~~~e~Sa~~g~~v~~lf~~l~~ 162 (170)
T cd04108 141 EYWSVSALSGENVREFFFRVAA 162 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999988763
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-17 Score=127.58 Aligned_cols=125 Identities=16% Similarity=0.137 Sum_probs=84.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++++|||||+++|++..-. .+..+.+..+.....+.. .+....+.+|||||++.|.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~~ 63 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV--------------SKYLPTIGIDYGVKKVSV----RNKEVRVNFFDLSGHPEYL 63 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------------CCCCCccceeEEEEEEEE----CCeEEEEEEEECCccHHHH
Confidence 6999999999999999999763211 111222333332333333 3445789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCC--HHHHHHHHHHHhCCC
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNAN--PEACEEQLQTLFNID 152 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~--~~~~~~~~~~~~~~~ 152 (257)
..+...++.+|++|+|+|.++ +|+.+.. ..+....+....
T Consensus 64 ~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--- 140 (168)
T cd04119 64 EVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESK--- 140 (168)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHc---
Confidence 888888999999999999985 3332110 011111122222
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+++++||++|.|++++++.|.
T Consensus 141 ~~~~~~~Sa~~~~gi~~l~~~l~ 163 (168)
T cd04119 141 GFKYFETSACTGEGVNEMFQTLF 163 (168)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 25699999999999999998775
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-17 Score=126.47 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=87.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++++...-. . +...|.........+.. ++....+.+|||||+++|.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~--------------~--~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~ 63 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE--------------K--KYVATLGVEVHPLDFHT--NRGKIRFNVWDTAGQEKFG 63 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------------C--CCCCceeeEEEEEEEEE--CCEEEEEEEEECCCChhhc
Confidence 6999999999999999999742210 0 11123332233333332 3455789999999999988
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEec
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIW 160 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 160 (257)
......+..+|++|+|+|.++ +|+....... +..+.......+++++|
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~e~S 140 (166)
T cd00877 64 GLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKA---KQITFHRKKNLQYYEIS 140 (166)
T ss_pred cccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCH---HHHHHHHHcCCEEEEEe
Confidence 777778899999999999997 5654222111 11122223345799999
Q ss_pred ccccccccccccccCC
Q psy12244 161 HRRCFSCADCHRSLDS 176 (257)
Q Consensus 161 a~~g~gi~~l~~~i~~ 176 (257)
|++|.|+++++++|.+
T Consensus 141 a~~~~~v~~~f~~l~~ 156 (166)
T cd00877 141 AKSNYNFEKPFLWLAR 156 (166)
T ss_pred CCCCCChHHHHHHHHH
Confidence 9999999999998873
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-17 Score=128.90 Aligned_cols=129 Identities=13% Similarity=0.187 Sum_probs=87.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..++|||||+++|+...- ..+..+.+..+.....+.. ++....+.+|||+|+++|.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f--------------~~~~~~T~g~~~~~~~i~~----~~~~~~l~iwDt~G~~~~~ 63 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF--------------DEDYIQTLGVNFMEKTISI----RGTEITFSIWDLGGQREFI 63 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--------------CCCCCCccceEEEEEEEEE----CCEEEEEEEEeCCCchhHH
Confidence 689999999999999999965321 1111122222222223333 3455789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCC----CHHHHHHHHHHHhCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNA----NPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~----~~~~~~~~~~~~~~~~~~~~ 156 (257)
..+..+++.+|++++|+|+++ +|+... ......++.+++......++
T Consensus 64 ~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~ 143 (182)
T cd04128 64 NMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPL 143 (182)
T ss_pred HhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEE
Confidence 888889999999999999987 565311 11112222222221122579
Q ss_pred EEecccccccccccccccCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++||++|.|++++++++..
T Consensus 144 ~e~SAk~g~~v~~lf~~l~~ 163 (182)
T cd04128 144 IFCSTSHSINVQKIFKIVLA 163 (182)
T ss_pred EEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998863
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-17 Score=126.22 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=86.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+++|+...... ...+..+.+.....+.+ ++....+.+|||||+.+|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~l~l~D~~G~~~~ 62 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE--------------DSQHTIGVEFGSKIIRV----GGKRVKLQIWDTAGQERF 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCceeeeEEEEEEEE----CCEEEEEEEEECcchHHH
Confidence 379999999999999999997532211 11122222222222322 334478999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
.......++.+|++++|+|+++ +|+.... ..+....+...++ .++
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~ 139 (161)
T cd04113 63 RSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENG---LLF 139 (161)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC---CEE
Confidence 9888889999999999999987 5553221 1111222222223 569
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|++++++++.
T Consensus 140 ~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 140 LETSALTGENVEEAFLKCA 158 (161)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999988765
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-17 Score=154.44 Aligned_cols=106 Identities=48% Similarity=0.733 Sum_probs=90.0
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecc----cCCccEEEE
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSI----LDGEEYLLN 98 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----~~~~~~~~~ 98 (257)
.++++||+|+||+++|||||+++|++..+.+... ...+.+|..+.|+++|+|++.....+.|... ..+..+.++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 4678899999999999999999999988876544 3345689999999999999987777777520 012357899
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|+|||||.+|...+..+++.+|++|+|+|+..
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~ 127 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVE 127 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC
Confidence 99999999999999999999999999999998
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-17 Score=131.01 Aligned_cols=127 Identities=11% Similarity=0.102 Sum_probs=88.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|++..- ..+..+.++.+.....+.+. ++....+.||||||++.|.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~--------------~~~~~~T~~~d~~~~~i~~~---~~~~~~~~i~Dt~G~~~~~ 64 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF--------------GKSYKQTIGLDFFSKRVTLP---GNLNVTLQVWDIGGQSIGG 64 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--------------CCCCCCceeEEEEEEEEEeC---CCCEEEEEEEECCCcHHHH
Confidence 689999999999999999965211 11112233333333333332 2235789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
......++.+|++|+|+|+++ +|+.+.. ..+..+.+.+.++ .
T Consensus 65 ~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~---~ 141 (215)
T cd04109 65 KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG---M 141 (215)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC---C
Confidence 888889999999999999997 5553211 1122233333333 4
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|+|+++++++|..
T Consensus 142 ~~~~iSAktg~gv~~lf~~l~~ 163 (215)
T cd04109 142 ESCLVSAKTGDRVNLLFQQLAA 163 (215)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998874
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-17 Score=124.89 Aligned_cols=127 Identities=18% Similarity=0.252 Sum_probs=84.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||++++++.... .. ..+... ......+.+ ++....+.+|||||+++|
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~------------~~~t~~-~~~~~~~~~----~~~~~~~~i~Dt~G~~~~ 63 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TD------------YDPTIE-DSYTKQCEI----DGQWAILDILDTAGQEEF 63 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cc------------cCCCcc-ceEEEEEEE----CCEEEEEEEEECCCCcch
Confidence 58999999999999999999763211 00 011111 111111222 334478999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
...+...++.+|++++|+|+++ +|+..... ...++..+.......+++
T Consensus 64 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04145 64 SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK-VSREEGQELARKLKIPYI 142 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce-ecHHHHHHHHHHcCCcEE
Confidence 9998899999999999999987 55533210 011122222211124799
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|++++++.|.
T Consensus 143 ~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 143 ETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EeeCCCCCCHHHHHHHHH
Confidence 999999999999988775
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.8e-17 Score=129.07 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=87.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|+...-. ....+.+..+.....+.+. .+....+.||||||++.|.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~--------------~~~~~t~~~d~~~~~v~~~---~~~~~~l~l~Dt~G~~~~~ 64 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS--------------QHYKATIGVDFALKVIEWD---PNTVVRLQLWDIAGQERFG 64 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCceeEEEEEEEEEEC---CCCEEEEEEEECCCchhhh
Confidence 6999999999999999999753210 0111222222222233332 1455789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
..+...++.+|++|+|+|.++ +|+.+.. ..+..+++.+..+ .
T Consensus 65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~ 142 (201)
T cd04107 65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG--F 142 (201)
T ss_pred hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC--C
Confidence 888999999999999999986 4543111 1112223333323 2
Q ss_pred cceEEecccccccccccccccCCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
.+++++||++|.|+++++++|...
T Consensus 143 ~~~~e~Sak~~~~v~e~f~~l~~~ 166 (201)
T cd04107 143 IGWFETSAKEGINIEEAMRFLVKN 166 (201)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHH
Confidence 469999999999999999988743
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=124.47 Aligned_cols=124 Identities=18% Similarity=0.274 Sum_probs=84.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...... . ..+... +........ ++....+.+|||||+++|.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~--~------------~~~t~~-~~~~~~~~~----~~~~~~l~i~Dt~g~~~~~ 62 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD--D------------YDPTIE-DSYRKQIEI----DGEVCLLDILDTAGQEEFS 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--c------------cCCchh-hhEEEEEEE----CCEEEEEEEEECCCcccch
Confidence 69999999999999999997633210 0 000010 111111112 3445789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
..+...++.+|++++|+|+++ +|+.... ..+....+.+.++ .++
T Consensus 63 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 139 (164)
T smart00173 63 AMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG---CPF 139 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC---CEE
Confidence 988889999999999999987 6654321 1122222333333 579
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|+++++++|.
T Consensus 140 ~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 140 LETSAKERVNVDEAFYDLV 158 (164)
T ss_pred EEeecCCCCCHHHHHHHHH
Confidence 9999999999999998776
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-17 Score=126.53 Aligned_cols=129 Identities=18% Similarity=0.239 Sum_probs=87.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+++|+...-.. +..+..+.+.....+.. ++....+.+|||||+..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~ 64 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL--------------DSKSTIGVEFATRSIQI----DGKTIKAQIWDTAGQER 64 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceEEEEEEEEE----CCEEEEEEEEeCCChHH
Confidence 3689999999999999999997532111 11222233333333333 33446899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
|.......++.+|++|+|+|+.+ +|+.... ....++..........+++
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01868 65 YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR-AVPTEEAKAFAEKNGLSFI 143 (165)
T ss_pred HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-cCCHHHHHHHHHHcCCEEE
Confidence 98888888999999999999986 5553221 0011122222211235699
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|++++++.+.
T Consensus 144 ~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 144 ETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999988765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-18 Score=144.83 Aligned_cols=205 Identities=20% Similarity=0.234 Sum_probs=143.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCC--CcccccchHHHhhhCceEecee-------------------eEEEe
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG--SSQVLDSLQVEQERGITVKAQT-------------------ASLRY 86 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~--~~~~~d~~~~e~~~g~t~~~~~-------------------~~~~~ 86 (257)
..+|+++|++++|||||++.|. .+.+++.. ..+-+.++++|.+.|.|...+. ..+.|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLT--HgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLT--HGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred eEEEEEEecccCCcceeEeeee--ecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 3579999999999999999984 45554442 2233445666666666643322 23445
Q ss_pred ecccCCccEEEEEeCCCCCcccHHHHHHhh--hhcceEEEEEecCc--------------------------cCCCCCC-
Q psy12244 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSL--AACQGVVLLIDANQ--------------------------VDLKNAN- 137 (257)
Q Consensus 87 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~--~~aD~~ilVvd~~~--------------------------~D~~~~~- 137 (257)
-.+|++....++|||.+||++|.+.+..++ +..|+.+|++.++. +|.+.++
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANi 290 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANI 290 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHH
Confidence 555667778899999999999999999887 45899999999887 8998887
Q ss_pred HHHHHHHHHHHhCCC--------------------------ccceEEecccccccccccccccCCCcccCCCCCCCCCCC
Q psy12244 138 PEACEEQLQTLFNID--------------------------KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKAT 191 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~--------------------------~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~ 191 (257)
+++..+.+.+.+..+ .+|+|.+|..+|+|++.|..+|+.+++-..+ .+.
T Consensus 291 LqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls~R~~~-----~E~ 365 (641)
T KOG0463|consen 291 LQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLSLRRQL-----NEN 365 (641)
T ss_pred HHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcCccccc-----ccC
Confidence 566666666655321 2489999999999999999888865542221 223
Q ss_pred CCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCccccCChhh
Q psy12244 192 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQV 242 (257)
Q Consensus 192 ~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~~~d~~~~ 242 (257)
.+.++.+++.+-+..+|.+.+| ++....+..+..+. .|+....|++++
T Consensus 366 ~PAeFQIDD~Y~VpGVGTvvSG--T~L~GtIrLND~Ll-LGPd~~G~F~pI 413 (641)
T KOG0463|consen 366 DPAEFQIDDIYWVPGVGTVVSG--TLLSGTIRLNDILL-LGPDSNGDFMPI 413 (641)
T ss_pred CCcceeecceEecCCcceEeec--ceeeeeEEeccEEE-ecCCCCCCeeee
Confidence 3446677888888888888888 55555555444332 566666666554
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=125.98 Aligned_cols=132 Identities=16% Similarity=0.205 Sum_probs=88.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec------ccCCccEEEEEe
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS------ILDGEEYLLNLI 100 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~------~~~~~~~~~~li 100 (257)
...+|+++|.+|+|||||+++|....- ..+....+..+.....+.+.. ...+....+.||
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKF--------------NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLW 68 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--------------CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEE
Confidence 457899999999999999999965211 011112222222222233221 001345789999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHH
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQT 147 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~ 147 (257)
||||+++|...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+
T Consensus 69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~ 148 (180)
T cd04127 69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD 148 (180)
T ss_pred eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH
Confidence 999999999888999999999999999987 5553221 1122233333
Q ss_pred HhCCCccceEEecccccccccccccccC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.++ .+++++||++|.|++++++.|.
T Consensus 149 ~~~---~~~~e~Sak~~~~v~~l~~~l~ 173 (180)
T cd04127 149 KYG---IPYFETSAATGTNVEKAVERLL 173 (180)
T ss_pred HcC---CeEEEEeCCCCCCHHHHHHHHH
Confidence 333 4699999999999999998876
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=123.50 Aligned_cols=123 Identities=14% Similarity=0.062 Sum_probs=86.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||++++++.... ....|.......+.+.. ..+.+|||||+..+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~i~D~~G~~~~~ 57 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-----------------TTIPTIGFNVETVEYKN------VSFTVWDVGGQDKIR 57 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCCCCcCcceEEEEECC------EEEEEEECCCChhhH
Confidence 5899999999999999999764311 01112222233344433 789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~~~~~~ 156 (257)
..+...+..+|++++|+|+.. +|+.... .++..+.+... ......++
T Consensus 58 ~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (158)
T cd00878 58 PLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHI 137 (158)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEE
Confidence 888888899999999999986 5654332 23333332221 12234579
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|+++++++|.
T Consensus 138 ~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 138 QPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred EEeeCCCCCCHHHHHHHHh
Confidence 9999999999999988775
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=125.61 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=85.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|..|+|||||+++|.. +... + .. .|+......+.+.. ..+.+|||||+.
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~--~~~~--------~-----~~--~t~~~~~~~~~~~~------~~l~l~D~~G~~ 68 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKL--GESV--------T-----TI--PTIGFNVETVTYKN------ISFTVWDVGGQD 68 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhc--CCCC--------C-----cC--CccccceEEEEECC------EEEEEEECCCCh
Confidence 357899999999999999999953 1110 0 01 22222222333333 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCC---
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNID--- 152 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~--- 152 (257)
.|...+...++.+|++|+|+|+++ +|+.+... .+++.+.++..
T Consensus 69 ~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~ 145 (175)
T smart00177 69 KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK---AAEITEKLGLHSIR 145 (175)
T ss_pred hhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC---HHHHHHHhCccccC
Confidence 999988999999999999999986 45433211 12333333322
Q ss_pred --ccceEEecccccccccccccccC
Q psy12244 153 --KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 --~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...++++||++|.|+++++++|.
T Consensus 146 ~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 146 DRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred CCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 22467899999999999998876
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-17 Score=123.16 Aligned_cols=129 Identities=18% Similarity=0.221 Sum_probs=93.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....++.++|..|+|||+|+.+++.+.-... ....+.++.+...+.. +++..++++|||+||
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~--------------hd~TiGvefg~r~~~i----d~k~IKlqiwDtaGq 65 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPV--------------HDLTIGVEFGARMVTI----DGKQIKLQIWDTAGQ 65 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCcccc--------------ccceeeeeeceeEEEE----cCceEEEEEEecCCc
Confidence 3456899999999999999999976432211 1122333333333433 677899999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+.|...+.++++.|-++|||+|.+. +|+...+ -++.-+++++..|
T Consensus 66 e~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg--- 142 (216)
T KOG0098|consen 66 ESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHG--- 142 (216)
T ss_pred HHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcC---
Confidence 9999999999999999999999998 6664332 1222233333334
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++++||++++|+++.|....
T Consensus 143 LifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 143 LIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred ceeehhhhhhhhhHHHHHHHHH
Confidence 4588999999999999887654
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=124.20 Aligned_cols=129 Identities=21% Similarity=0.274 Sum_probs=87.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+++|+++|++|+|||||+++|++....... ..++.+.......+.+.+ ..+.+|||||+.+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~------~~~~iiDtpG~~~ 62 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS-------------DIAGTTRDSIDVPFEYDG------KKYTLIDTAGIRR 62 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc-------------CCCCCccCceeeEEEECC------eeEEEEECCCCcc
Confidence 567999999999999999999764322211 123344443334444443 5688999999754
Q ss_pred cH-----------HHHHHhhhhcceEEEEEecCc--------------------------cCCCCCC---HHHHHHHHHH
Q psy12244 108 FS-----------NEVTRSLAACQGVVLLIDANQ--------------------------VDLKNAN---PEACEEQLQT 147 (257)
Q Consensus 108 ~~-----------~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~---~~~~~~~~~~ 147 (257)
.. ......+..+|++++|+|+.. +|+.... .+...+.+++
T Consensus 63 ~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (174)
T cd01895 63 KGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRR 142 (174)
T ss_pred ccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHh
Confidence 31 123445678999999999877 6664431 3344455555
Q ss_pred HhC-CCccceEEecccccccccccccccC
Q psy12244 148 LFN-IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 148 ~~~-~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.++ ....+++++||++|.|++++++.+.
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 171 (174)
T cd01895 143 KLPFLDYAPIVFISALTGQGVDKLFDAID 171 (174)
T ss_pred hcccccCCceEEEeccCCCCHHHHHHHHH
Confidence 543 2346799999999999999987765
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.8e-17 Score=124.46 Aligned_cols=124 Identities=17% Similarity=0.258 Sum_probs=83.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEec-eeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKA-QTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|.+|+|||||+++|++..-. .. .. .|... ....+.+ ++....+.+|||||+++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~------------~~--~t~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~ 61 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DE------------YD--PTIEDSYRKQVVI----DGETCLLDILDTAGQEE 61 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CC------------cC--CcchheEEEEEEE----CCEEEEEEEEECCCCcc
Confidence 47999999999999999999753211 00 00 11110 1111222 33446788999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~ 155 (257)
|...+..+++.+|++++|+|.++ +|+.... ......++.+.++ .+
T Consensus 62 ~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~ 138 (162)
T cd04138 62 YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG---IP 138 (162)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC---Ce
Confidence 99999999999999999999886 5553321 1111222222223 46
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|+++++++|.
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 139 YIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988775
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-17 Score=121.77 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=89.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..+|.++|.+|+|||||+-+|+...- ..+....+.++.....+.. ++...++.+|||+|++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f--------------d~~~~~tIGvDFkvk~m~v----dg~~~KlaiWDTAGqE 71 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF--------------DDLHPTTIGVDFKVKVMQV----DGKRLKLAIWDTAGQE 71 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc--------------CccCCceeeeeEEEEEEEE----cCceEEEEEEeccchH
Confidence 357899999999999999999965321 1122222334444444433 6677999999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
+|+..+.++++.|.++|+|+|.+. +|....+ ....++-.++..-..+-
T Consensus 72 rFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R-~V~reEG~kfAr~h~~L 150 (209)
T KOG0080|consen 72 RFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER-VVDREEGLKFARKHRCL 150 (209)
T ss_pred hhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcc-cccHHHHHHHHHhhCcE
Confidence 999999999999999999999998 4432211 11111111222122345
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
|+++||++.+|++..|+.+.
T Consensus 151 FiE~SAkt~~~V~~~Feelv 170 (209)
T KOG0080|consen 151 FIECSAKTRENVQCCFEELV 170 (209)
T ss_pred EEEcchhhhccHHHHHHHHH
Confidence 89999999999987776654
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=128.69 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=88.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+++|+..... +..+..+.+.....+.+ ++..+.+.||||||+
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~---------------~~~~t~~~~~~~~~~~~----~~~~~~l~l~Dt~G~ 72 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE---------------DLAPTIGVDFKIKQLTV----GGKRLKLTIWDTAGQ 72 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---------------CcCCCceeEEEEEEEEE----CCEEEEEEEEECCCc
Confidence 34578999999999999999999753211 01112222222222332 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCCH--HHHHHHHHHHhCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNANP--EACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~~--~~~~~~~~~~~~~ 151 (257)
++|...+..+++.+|++|+|+|+++ +|+..... .+....+....
T Consensus 73 ~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~-- 150 (211)
T PLN03118 73 ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEH-- 150 (211)
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc--
Confidence 9999988999999999999999987 44432110 11111222222
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|++++++.|..
T Consensus 151 -~~~~~e~SAk~~~~v~~l~~~l~~ 174 (211)
T PLN03118 151 -GCLFLECSAKTRENVEQCFEELAL 174 (211)
T ss_pred -CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 346899999999999999988874
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=125.74 Aligned_cols=124 Identities=15% Similarity=0.189 Sum_probs=85.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||++++.. +... . .. .|.......+.+.. ..+.+|||||+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~--~~~~--------~-----~~--~T~~~~~~~~~~~~------~~~~l~D~~G~ 71 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKL--GEVV--------T-----TI--PTIGFNVETVEYKN------LKFTMWDVGGQ 71 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhc--CCcc--------c-----cC--CccccceEEEEECC------EEEEEEECCCC
Confidence 3446899999999999999999943 1110 0 01 12222222333333 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCc-
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDK- 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~- 153 (257)
+.+...+...++.+|++|+|+|+++ .|+.+... .+++...++...
T Consensus 72 ~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~l~~~~~ 148 (182)
T PTZ00133 72 DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS---TTEVTEKLGLHSV 148 (182)
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC---HHHHHHHhCCCcc
Confidence 9999989999999999999999976 45433211 123333343321
Q ss_pred ----cceEEecccccccccccccccC
Q psy12244 154 ----KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ----~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 149 ~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 149 RQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred cCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 2467899999999999998876
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=128.60 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=89.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+++|+...-.. ...+.++.+.....+.+. ++....+.+|||||++.|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~--------------~~~~ti~~d~~~~~i~~~---~~~~~~l~i~Dt~G~~~~ 65 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE--------------VSDPTVGVDFFSRLIEIE---PGVRIKLQLWDTAGQERF 65 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCceeceEEEEEEEEEC---CCCEEEEEEEeCCcchhH
Confidence 679999999999999999997532110 011222223222223322 244578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
.......++.+|++++|+|.++ +|+.... ..+..+++.+.++ .+
T Consensus 66 ~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~---~~ 142 (211)
T cd04111 66 RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG---MK 142 (211)
T ss_pred HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC---CE
Confidence 9888889999999999999987 5553321 1222333444333 56
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|++++++.|..
T Consensus 143 ~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 143 YIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999998874
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.4e-17 Score=143.91 Aligned_cols=131 Identities=21% Similarity=0.238 Sum_probs=94.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+|+|++...... ....|.|.+.....+.+.+ ..+.+|||||+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-------------~~~~gtt~~~~~~~~~~~~------~~~~liDT~G~ 230 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV-------------SDIAGTTRDSIDIPFERNG------KKYLLIDTAGI 230 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeec-------------CCCCCceECcEeEEEEECC------cEEEEEECCCc
Confidence 3457899999999999999999986443322 1245677766555665554 57899999998
Q ss_pred cccHH-----------HHHHhhhhcceEEEEEecCc--------------------------cCCCC--CCHHHHHHHHH
Q psy12244 106 VDFSN-----------EVTRSLAACQGVVLLIDANQ--------------------------VDLKN--ANPEACEEQLQ 146 (257)
Q Consensus 106 ~~~~~-----------~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~--~~~~~~~~~~~ 146 (257)
.++.. ....+++.+|++|+|+|+.. +|+.+ ...++..++++
T Consensus 231 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~ 310 (429)
T TIGR03594 231 RRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELR 310 (429)
T ss_pred cccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHH
Confidence 65321 23456789999999999997 77752 12345555565
Q ss_pred HHhC-CCccceEEecccccccccccccccC
Q psy12244 147 TLFN-IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 147 ~~~~-~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+. ....+++++||++|.|++++++.+.
T Consensus 311 ~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 311 RKLPFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred HhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 5543 3457899999999999999998876
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=126.65 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=86.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|+.|+|||||+++|...... ....|.......+.+.+ ..+.+|||||+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-----------------~~~~T~~~~~~~i~~~~------~~~~l~D~~G~~ 74 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-----------------QHVPTLHPTSEELTIGN------IKFKTFDLGGHE 74 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-----------------ccCCccCcceEEEEECC------EEEEEEECCCCH
Confidence 4578999999999999999999642210 01112222333444444 688999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC----
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI---- 151 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~---- 151 (257)
++...+..+++.+|++++|+|+.+ +|+..... .+++++.++.
T Consensus 75 ~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~---~~~~~~~~~~~~~~ 151 (190)
T cd00879 75 QARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVS---EEELRQALGLYGTT 151 (190)
T ss_pred HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcC---HHHHHHHhCccccc
Confidence 998888888999999999999976 66543211 2233333321
Q ss_pred ------------CccceEEecccccccccccccccC
Q psy12244 152 ------------DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ------------~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|+|+++++++|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~ 187 (190)
T cd00879 152 TGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLS 187 (190)
T ss_pred ccccccccccCceeEEEEEeEecCCCChHHHHHHHH
Confidence 123589999999999999998876
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=124.59 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=85.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|++|+|||||+++|+...- ..+..+.++.+.....+.+ ++....+.||||||++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF--------------DTQLFHTIGVEFLNKDLEV----DGHFVTLQIWDTAGQE 65 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC--------------CcCcCCceeeEEEEEEEEE----CCeEEEEEEEeCCChH
Confidence 457899999999999999999964211 0111112222221222222 4455788999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCCHHHHHHHHHHHh-CC
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNANPEACEEQLQTLF-NI 151 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~~~~~~~~~~~~~-~~ 151 (257)
+|...+...++.+|++++|+|.++ +|+.+.. ...++++++. ..
T Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~ 143 (170)
T cd04116 66 RFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ--VSTEEAQAWCREN 143 (170)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc--cCHHHHHHHHHHC
Confidence 999988899999999999999886 4442111 1112222222 12
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+.++++.+.
T Consensus 144 ~~~~~~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 144 GDYPYFETSAKDATNVAAAFEEAV 167 (170)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 234689999999999999988765
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=128.51 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=88.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|++|+|||||+++|+...-. .+..+.+..+.....+.+ .+....+.||||||++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS--------------GSYITTIGVDFKIRTVEI----NGERVKLQIWDTAGQE 66 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC--------------CCcCccccceeEEEEEEE----CCEEEEEEEEeCCCch
Confidence 3578999999999999999999653210 001111222222222222 3344678999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
.|...+...++.+|++++|+|+++ +|+.+.. ..+....+...++ .+
T Consensus 67 ~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~---~~ 143 (199)
T cd04110 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG---IS 143 (199)
T ss_pred hHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcC---CE
Confidence 999888899999999999999987 6664321 1111222222223 56
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|+++++++|..
T Consensus 144 ~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 144 LFETSAKENINVEEMFNCITE 164 (199)
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 999999999999999998864
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-17 Score=137.33 Aligned_cols=138 Identities=38% Similarity=0.584 Sum_probs=120.0
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
+.+..+++||+|+.|.++||||...++++..|.+... ++.++.|.+..|+++|+|+......+.|++ +.+
T Consensus 31 ~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg------~ri 104 (753)
T KOG0464|consen 31 NPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG------HRI 104 (753)
T ss_pred CCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc------ceE
Confidence 4455789999999999999999999999999888655 778899999999999999999999999998 999
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
++||||||.+|.-++.+.++..|+++.|+|++. ||+..++++...+.+++.++.
T Consensus 105 nlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 105 NLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred eeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 999999999999999999999999999999997 788788888888888888876
Q ss_pred Cccc-eEEecccccc
Q psy12244 152 DKKS-VLRIWHRRCF 165 (257)
Q Consensus 152 ~~~~-~i~iSa~~g~ 165 (257)
.... .+|+--..|.
T Consensus 185 k~l~l~lpi~eak~f 199 (753)
T KOG0464|consen 185 KALKLQLPIGEAKGF 199 (753)
T ss_pred ceEEEEecccccccc
Confidence 5432 3566654444
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-17 Score=149.60 Aligned_cols=183 Identities=21% Similarity=0.211 Sum_probs=106.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc--CCcc---------
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL--DGEE--------- 94 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~--~~~~--------- 94 (257)
.|++.|+++||+|+|||||+++|.+..... ....++|...+...+.+.... .+..
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~--------------~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAA--------------KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLK 69 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc--------------CCCCceEEeeceeeccccccccccceeccccccccc
Confidence 466789999999999999999996532211 111234433332222221100 0000
Q ss_pred -EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCC-CCH--------
Q psy12244 95 -YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKN-ANP-------- 138 (257)
Q Consensus 95 -~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~-~~~-------- 138 (257)
..++|||||||++|...+..+++.+|++++|+|+++ +|+.. +..
T Consensus 70 ~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e 149 (586)
T PRK04004 70 IPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLE 149 (586)
T ss_pred cCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHH
Confidence 127899999999999999999999999999999985 67642 110
Q ss_pred ------HHHH-------HHHHHHh---CC------------CccceEEecccccccccccccccCCCcccCCCCCC-CCC
Q psy12244 139 ------EACE-------EQLQTLF---NI------------DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKP-DSK 189 (257)
Q Consensus 139 ------~~~~-------~~~~~~~---~~------------~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~-~~~ 189 (257)
.... .++...+ ++ ...+++++||++|+|+++|++.+..... ..++.+ ...
T Consensus 150 ~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~-~~l~~~l~~~ 228 (586)
T PRK04004 150 SIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ-RYLEERLKID 228 (586)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH-HHHHHhhccC
Confidence 0011 1111111 21 2357999999999999998877642110 001000 011
Q ss_pred CCCCCCcchh-----hhcceeeEeeecccchhhHHHHHH
Q psy12244 190 ATPYEDIPIA-----RIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 190 ~~~~~~~~~~-----~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
...+...++. +..+.+..|.+.+|....++.++.
T Consensus 229 ~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~ 267 (586)
T PRK04004 229 VEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVV 267 (586)
T ss_pred CCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEE
Confidence 1112233322 234566777788887777776644
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=123.50 Aligned_cols=115 Identities=19% Similarity=0.283 Sum_probs=78.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc--
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV-- 106 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-- 106 (257)
++|+++|++|+|||||+|+|.+... . ...+..+.|.. . .+|||||+.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~---------------------~--~~~~~~v~~~~------~--~~iDtpG~~~~ 50 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT---------------------L--ARKTQAVEFND------K--GDIDTPGEYFS 50 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc---------------------c--CccceEEEECC------C--CcccCCccccC
Confidence 4799999999999999999854210 0 01122233332 1 269999973
Q ss_pred --ccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEec
Q psy12244 107 --DFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIW 160 (257)
Q Consensus 107 --~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 160 (257)
++...+..++..+|++++|+|++. +|+.+.+.+...+.+.+ ++. ..|++++|
T Consensus 51 ~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~-~~~-~~p~~~~S 128 (158)
T PRK15467 51 HPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDADVAATRKLLLE-TGF-EEPIFELN 128 (158)
T ss_pred CHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcccHHHHHHHHHH-cCC-CCCEEEEE
Confidence 455555667889999999999986 56544444333333332 333 25899999
Q ss_pred ccccccccccccccCC
Q psy12244 161 HRRCFSCADCHRSLDS 176 (257)
Q Consensus 161 a~~g~gi~~l~~~i~~ 176 (257)
|++|+|++++++++.+
T Consensus 129 a~~g~gi~~l~~~l~~ 144 (158)
T PRK15467 129 SHDPQSVQQLVDYLAS 144 (158)
T ss_pred CCCccCHHHHHHHHHH
Confidence 9999999999998874
|
|
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=123.96 Aligned_cols=129 Identities=17% Similarity=0.223 Sum_probs=85.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+....... .....+.+.....+.. .+....+.+|||||+++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~ 65 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------HDLTIGVEFGARMITI----DGKQIKLQIWDTAGQES 65 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceeEEEEEEEE----CCEEEEEEEEECCCcHH
Confidence 46899999999999999999975321110 0111122222222333 33346899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
|.......++.+|++++|+|+++ +|+.... ....++..........+++
T Consensus 66 ~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 66 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR-EVSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-CCCHHHHHHHHHHcCCEEE
Confidence 98888889999999999999987 5554211 0011122222211235699
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|+++++..+.
T Consensus 145 e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 145 ETSAKTASNVEEAFINTA 162 (168)
T ss_pred EEeCCCCCCHHHHHHHHH
Confidence 999999999999987765
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=124.76 Aligned_cols=128 Identities=15% Similarity=0.090 Sum_probs=84.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++++..... . .. .|............ .+.....+.+|||||+++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~----------~-----~~--~t~~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~ 64 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV----------N-----TV--PTKGFNTEKIKVSL-GNSKGITFHFWDVGGQEK 64 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC----------C-----cC--CccccceeEEEeec-cCCCceEEEEEECCCcHh
Confidence 357999999999999999999652211 0 01 11111111122210 022347899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhC------
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFN------ 150 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~------ 150 (257)
|...+...++.+|++++|+|+++ +|+..... .+++...++
T Consensus 65 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~~~~~ 141 (183)
T cd04152 65 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALS---VSEVEKLLALHELSA 141 (183)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCC---HHHHHHHhCccccCC
Confidence 98888888999999999999986 45432211 112222221
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|++++++.|..
T Consensus 142 ~~~~~~~~~SA~~~~gi~~l~~~l~~ 167 (183)
T cd04152 142 STPWHVQPACAIIGEGLQEGLEKLYE 167 (183)
T ss_pred CCceEEEEeecccCCCHHHHHHHHHH
Confidence 11246899999999999999988763
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=121.91 Aligned_cols=125 Identities=15% Similarity=0.214 Sum_probs=85.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++++|||||+++++... .. .+..+.+..+.....+.. .+....+.+|||||+.+|.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~--~~------------~~~~~t~~~~~~~~~~~~----~~~~~~l~i~D~~g~~~~~ 63 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE--FH------------SSHISTIGVDFKMKTIEV----DGIKVRIQIWDTAGQERYQ 63 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CC------------CCCCCceeeEEEEEEEEE----CCEEEEEEEEeCCCcHhHH
Confidence 68999999999999999996421 10 011112222222222332 3445789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
..+...++.+|++++|+|.++ .|+.+.. ..+....+.+.++ ++++
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~---~~~~ 140 (161)
T cd04117 64 TITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG---MDFF 140 (161)
T ss_pred hhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC---CEEE
Confidence 888889999999999999887 5553322 1222333333333 5799
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|+++++++|.
T Consensus 141 e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 141 ETSACTNSNIKESFTRLT 158 (161)
T ss_pred EEeCCCCCCHHHHHHHHH
Confidence 999999999999998775
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=122.32 Aligned_cols=124 Identities=19% Similarity=0.160 Sum_probs=82.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|....-.. ...|.......+.+. ....+.+|||||+..+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~-----~~~~l~i~D~~G~~~~~ 58 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-----------------TIPTVGFNVEMLQLE-----KHLSLTVWDVGGQEKMR 58 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-----------------ccCccCcceEEEEeC-----CceEEEEEECCCCHhHH
Confidence 48999999999999999996532110 011222222222221 23689999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHH--HHhCCCccc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQ--TLFNIDKKS 155 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~--~~~~~~~~~ 155 (257)
..+...+..+|++++|+|+.+ +|+... ..++....+. ........+
T Consensus 59 ~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 138 (160)
T cd04156 59 TVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWY 138 (160)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEE
Confidence 888888999999999999977 454321 1222222211 111112346
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|+|++++++.|.
T Consensus 139 ~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 139 VQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred EEecccccCCChHHHHHHHh
Confidence 89999999999999998775
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=121.68 Aligned_cols=124 Identities=17% Similarity=0.269 Sum_probs=85.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|.+|+|||||+++++.. ..... ...|+... ...+.+ .+..+.+.+|||||++.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~~~--------------~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFVEK--------------YDPTIEDSYRKQVEV----DGQQCMLEILDTAGTEQ 61 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCCcc--------------cCCcchheEEEEEEE----CCEEEEEEEEECCCccc
Confidence 47999999999999999999742 11110 00111111 112222 34457889999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
|...+...++.+|++++|+|.++ +|+.... .....+++.+.++ .
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 138 (164)
T cd04175 62 FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG---C 138 (164)
T ss_pred chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC---C
Confidence 99999999999999999999876 5554321 1111233433333 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++++.
T Consensus 139 ~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 139 AFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EEEEeeCCCCCCHHHHHHHHH
Confidence 799999999999999988775
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=129.58 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=58.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+++|||||+++|+...- . +...|+........+.. +.+.||||||++.|.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f--------------~---~~~~Tig~~~~~~~~~~------~~l~iwDt~G~e~~~ 58 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF--------------K---DTVSTVGGAFYLKQWGP------YNISIWDTAGREQFH 58 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC--------------C---CCCCccceEEEEEEeeE------EEEEEEeCCCcccch
Confidence 689999999999999999965221 0 01122222222222322 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.....+++.+|++|+|+|+++
T Consensus 59 ~l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 59 GLGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred hhHHHHhccCCEEEEEEECCC
Confidence 988889999999999999998
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=125.26 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=86.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|+....... +....+..+.....+.+ ++....+.||||||+.+|.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~-------------~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~~ 64 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNG-------------NFIATVGIDFRNKVVTV----DGVKVKLQIWDTAGQERFR 64 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcc-------------CcCCcccceeEEEEEEE----CCEEEEEEEEeCCCcHHHH
Confidence 699999999999999999965321110 00111111211112222 3445789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
......++.+|++|+|+|++. +|+.... .....+.+...++ .+++
T Consensus 65 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~---~~~~ 141 (191)
T cd04112 65 SVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG---VPFM 141 (191)
T ss_pred HhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC---CeEE
Confidence 888888999999999999986 5653211 1122233333333 4799
Q ss_pred EecccccccccccccccCCC
Q psy12244 158 RIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~ 177 (257)
++||++|.|+++++++|...
T Consensus 142 e~Sa~~~~~v~~l~~~l~~~ 161 (191)
T cd04112 142 ETSAKTGLNVELAFTAVAKE 161 (191)
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988743
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=122.73 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=81.7
Q ss_pred EEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH-
Q psy12244 32 SIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN- 110 (257)
Q Consensus 32 ~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~- 110 (257)
+++|++|+|||||+++|+....... +...+.|.+.......+.+ +.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~------~~~~i~DtpG~~~~~~~ 61 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIV-------------EDTPGVTRDRIYGEAEWGG------REFILIDTGGIEPDDEG 61 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEee-------------cCCCCceeCceeEEEEECC------eEEEEEECCCCCCchhH
Confidence 5899999999999999976422111 1133455554444555544 7899999999988543
Q ss_pred -------HHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 111 -------EVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 111 -------~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
.+...++.+|++++|+|+.. +|+...+. ..+.+.. ++ ..+++
T Consensus 62 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~~-~~--~~~~~ 136 (157)
T cd01894 62 ISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEED--EAAEFYS-LG--FGEPI 136 (157)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHH--HHHHHHh-cC--CCCeE
Confidence 44566788999999999975 45543221 1122221 23 23689
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++|+++|.|+++++++|.
T Consensus 137 ~~Sa~~~~gv~~l~~~l~ 154 (157)
T cd01894 137 PISAEHGRGIGDLLDAIL 154 (157)
T ss_pred EEecccCCCHHHHHHHHH
Confidence 999999999999988775
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=122.59 Aligned_cols=127 Identities=14% Similarity=0.178 Sum_probs=85.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...-.. .....+..+.....+.+ .+....+.+|||||+..|.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~~~D~~g~~~~~ 63 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN--------------QYKATIGADFLTKEVTV----DDKLVTLQIWDTAGQERFQ 63 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc--------------CcCCccceEEEEEEEEE----CCEEEEEEEEeCCChHHHH
Confidence 69999999999999999996532110 01111222222222333 3344778899999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
..+...++.+|++|+|+|+++ +|+...+ ..+..+.+.+..+ .
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~ 141 (172)
T cd01862 64 SLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNG--N 141 (172)
T ss_pred hHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcC--C
Confidence 888899999999999999975 4553211 1122222222222 3
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++++..
T Consensus 142 ~~~~~~Sa~~~~gv~~l~~~i~~ 164 (172)
T cd01862 142 IPYFETSAKEAINVEQAFETIAR 164 (172)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988764
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=122.87 Aligned_cols=125 Identities=14% Similarity=0.174 Sum_probs=85.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+++|++..-.. ...+..........+.+ ++....+.+|||||+++|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~----~~~~~~~~i~D~~G~~~~ 63 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNL----DDTTVKFEIWDTAGQERY 63 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEE----CCEEEEEEEEeCCchHHH
Confidence 479999999999999999997643211 00111111111222333 334578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---HHHHHHHHHHHhCCCccc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN---PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~---~~~~~~~~~~~~~~~~~~ 155 (257)
.......++.+|++++|+|+++ +|+.... .++ ...+...++ .+
T Consensus 64 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~-~~~~~~~~~---~~ 139 (163)
T cd01860 64 RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEE-AQEYADENG---LL 139 (163)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHH-HHHHHHHcC---CE
Confidence 8888888899999999999987 5554211 122 222222223 56
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|+++++++|.
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 140 FFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 99999999999999988775
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=124.23 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=77.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+++|++|+|||||+++|++..... ....+.|.......+.+.. ..++||||||+.+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~--------------~~~~~~t~~~~~~~~~~~~------~~~~i~Dt~G~~~~ 60 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV--------------APYPFTTKSLFVGHFDYKY------LRWQVIDTPGLLDR 60 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc--------------CCCCCcccceeEEEEccCc------eEEEEEECCCcCCc
Confidence 579999999999999999997632210 1112334443333343333 78999999998431
Q ss_pred H--------HHHHHh-hhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHH
Q psy12244 109 S--------NEVTRS-LAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTL 148 (257)
Q Consensus 109 ~--------~~~~~~-~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~ 148 (257)
. ...... ...+|++++|+|++. +|+.... ... ...+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~--~~~-~~~~~ 137 (168)
T cd01897 61 PLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE--DLS-EIEEE 137 (168)
T ss_pred cccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh--hHH-HHHHh
Confidence 0 111112 234689999999974 3432211 111 12233
Q ss_pred hCCCccceEEecccccccccccccccC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
......+++++||++|.|++++++++.
T Consensus 138 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (168)
T cd01897 138 EELEGEEVLKISTLTEEGVDEVKNKAC 164 (168)
T ss_pred hhhccCceEEEEecccCCHHHHHHHHH
Confidence 333446799999999999999998776
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=126.85 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=85.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEecee-eEEEeecccCCccEEEEEeCCCCCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQT-ASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..+|+++|.+|+|||||++++++.... . +.. .|....+ ..+.+ ++....+.+|||||++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~------------~~~--~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--D------------EYD--PTIEDSYRKQCVI----DEETCLLDILDTAGQE 64 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--c------------CcC--CchhhEEEEEEEE----CCEEEEEEEEeCCCCc
Confidence 468999999999999999999753211 0 000 1111111 11122 3445789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH--HHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP--EACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~--~~~~~~~~~~~~~~~ 153 (257)
+|...+..+++.+|++++|+|+++ +|+.+... ......+.+.++
T Consensus 65 ~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~--- 141 (189)
T PTZ00369 65 EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFG--- 141 (189)
T ss_pred cchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhC---
Confidence 999999999999999999999987 45432210 111122222223
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|.+
T Consensus 142 ~~~~e~Sak~~~gi~~~~~~l~~ 164 (189)
T PTZ00369 142 IPFLETSAKQRVNVDEAFYELVR 164 (189)
T ss_pred CEEEEeeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=127.03 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=90.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|+.|+|||||+++|++..-. .+..+.+..+.....+.+ ++....+.||||||++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~--------------~~~~~t~g~~~~~~~v~~----~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC--------------LESKSTIGVEFATRTLQV----EGKTVKAQIWDTAGQE 72 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCceeEEEEEEEEEE----CCEEEEEEEEECCCcH
Confidence 4578999999999999999999653211 111222223332233333 3455789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+|...+...++.+|++|+|+|.++ +|+.... ..+....+.... ..
T Consensus 73 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~---~~ 149 (216)
T PLN03110 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKE---GL 149 (216)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHc---CC
Confidence 999988889999999999999986 4543221 122233333322 35
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.|++++++.|..
T Consensus 150 ~~~e~SA~~g~~v~~lf~~l~~ 171 (216)
T PLN03110 150 SFLETSALEATNVEKAFQTILL 171 (216)
T ss_pred EEEEEeCCCCCCHHHHHHHHHH
Confidence 7999999999999999988863
|
|
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-16 Score=127.43 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=88.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|..|+|||||+++++...- ..+.. .|+........+.. ++....+.+|||||+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f--------------~~~~~--~tig~~~~~~~~~~--~~~~~~l~i~Dt~G~ 72 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYE--PTIGVEVHPLDFFT--NCGKIRFYCWDTAGQ 72 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC--------------CCccC--CccceeEEEEEEEE--CCeEEEEEEEECCCc
Confidence 4557899999999999999999864221 11111 22222222222222 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCH-HHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANP-EACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~-~~~~~~~~~~~~~~~~~ 155 (257)
++|...+..+++.+|++|+|+|.++ +|+..... .+.. ++.+ ....+
T Consensus 73 ~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~---~~~~~ 148 (219)
T PLN03071 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHR---KKNLQ 148 (219)
T ss_pred hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHH---hcCCE
Confidence 9998888888999999999999998 55532111 1111 2222 22356
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|++++|++|..
T Consensus 149 ~~e~SAk~~~~i~~~f~~l~~ 169 (219)
T PLN03071 149 YYEISAKSNYNFEKPFLYLAR 169 (219)
T ss_pred EEEcCCCCCCCHHHHHHHHHH
Confidence 999999999999999988874
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-16 Score=118.87 Aligned_cols=113 Identities=25% Similarity=0.312 Sum_probs=82.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC--
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH-- 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~-- 105 (257)
+++|.++|++++|||||+++|.+.... ...|.. +.|. =.+|||||-
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~~~~------------------~~KTq~-----i~~~---------~~~IDTPGEyi 48 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGEEIR------------------YKKTQA-----IEYY---------DNTIDTPGEYI 48 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCCCCC------------------cCccce-----eEec---------ccEEECChhhe
Confidence 367999999999999999999542211 111211 2222 236999993
Q ss_pred --cccHHHHHHhhhhcceEEEEEecCc-----------------------cCCC--CCCHHHHHHHHHHHhCCCccceEE
Q psy12244 106 --VDFSNEVTRSLAACQGVVLLIDANQ-----------------------VDLK--NANPEACEEQLQTLFNIDKKSVLR 158 (257)
Q Consensus 106 --~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------~D~~--~~~~~~~~~~~~~~~~~~~~~~i~ 158 (257)
..|..........||.+++|.|+++ +|+. +++.+...+.++. .|.. ++|+
T Consensus 49 E~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~-aG~~--~if~ 125 (143)
T PF10662_consen 49 ENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKN-AGVK--EIFE 125 (143)
T ss_pred eCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHH-cCCC--CeEE
Confidence 4477777778889999999999998 8887 4555555555554 3544 5799
Q ss_pred ecccccccccccccccC
Q psy12244 159 IWHRRCFSCADCHRSLD 175 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~ 175 (257)
+|+.+|+|+++|.++|.
T Consensus 126 vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 126 VSAVTGEGIEELKDYLE 142 (143)
T ss_pred EECCCCcCHHHHHHHHh
Confidence 99999999999998875
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-16 Score=123.06 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=82.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+++++...- .. ....|....+. ..... +.....+.+|||||+++|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f--~~--------------~~~~t~~~~~~-~~~~~--~~~~~~l~i~Dt~G~~~~ 62 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF--RE--------------SYIPTIEDTYR-QVISC--SKNICTLQITDTTGSHQF 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CC--------------CcCCcchheEE-EEEEE--CCEEEEEEEEECCCCCcc
Confidence 4699999999999999999975321 00 00011111111 11111 234478999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCC-H-HHHHHHHHHHhCCCc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNAN-P-EACEEQLQTLFNIDK 153 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~-~-~~~~~~~~~~~~~~~ 153 (257)
......+++.+|++++|+|.++ +|+.... . ..........+ .
T Consensus 63 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---~ 139 (165)
T cd04140 63 PAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEW---N 139 (165)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHh---C
Confidence 9888888999999999999987 4543211 1 11111122212 2
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++++||++|.|+++++++|..
T Consensus 140 ~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 140 CAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred CcEEEeecCCCCCHHHHHHHHHh
Confidence 46899999999999999988763
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=119.82 Aligned_cols=127 Identities=18% Similarity=0.262 Sum_probs=85.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++++|||||+++|++...... ..+..+.+.....+.. ++....+.+||+||+..+.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~ 63 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN--------------YKSTIGVDFKSKTIEI----DGKTVKLQIWDTAGQERFR 63 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc--------------cCCceeeeeEEEEEEE----CCEEEEEEEEecCChHHHH
Confidence 699999999999999999975332211 1112222222222222 2344789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEe
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 159 (257)
......++.+|++++|+|+.+ +|+.... ....+++.+.......+++++
T Consensus 64 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~ 142 (159)
T cd00154 64 SITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR-QVSTEEAQQFAKENGLLFFET 142 (159)
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc-cccHHHHHHHHHHcCCeEEEE
Confidence 999999999999999999987 5553111 111222222222234579999
Q ss_pred cccccccccccccccC
Q psy12244 160 WHRRCFSCADCHRSLD 175 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~ 175 (257)
||++|.|+++++++|.
T Consensus 143 sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 143 SAKTGENVEELFQSLA 158 (159)
T ss_pred ecCCCCCHHHHHHHHh
Confidence 9999999999987764
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=121.12 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=86.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...-. ....+..+.+.....+.+ .+....+.+|||||+..|.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~l~D~~G~~~~~ 63 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS--------------EQYKSTIGVDFKTKTIEV----DGKRVKLQIWDTAGQERFR 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEE----CCEEEEEEEEECCChHHHH
Confidence 6999999999999999999753211 111122233322233333 3344689999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
......++.+|++++|+|+++ +|+.... ..+..+.+.+.++ .+++
T Consensus 64 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~ 140 (164)
T smart00175 64 SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHG---LPFF 140 (164)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcC---CeEE
Confidence 888889999999999999987 5553311 1122222333333 4699
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|++++++.|.
T Consensus 141 e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 141 ETSAKTNTNVEEAFEELA 158 (164)
T ss_pred EEeCCCCCCHHHHHHHHH
Confidence 999999999999988776
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.2e-16 Score=120.25 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=88.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
...++|+++|++|+|||||+++|+...-.. .....++.+.....+.+ ++....+.+|||||+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~~~D~~g~ 66 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP--------------GQGATIGVDFMIKTVEI----KGEKIKLQIWDTAGQ 66 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCceeeEEEEEEEEE----CCEEEEEEEEECCCc
Confidence 456899999999999999999996422110 01112222232333333 344467899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
..|...+...+..+|++++|+|+.+ +|+.... .....+.+.+.. .
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~---~ 143 (169)
T cd04114 67 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQ---D 143 (169)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc---C
Confidence 9999888889999999999999886 5653221 122223333322 2
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|++++++.|.
T Consensus 144 ~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 144 MYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred CeEEEeeCCCCCCHHHHHHHHH
Confidence 5689999999999999988765
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=122.42 Aligned_cols=125 Identities=20% Similarity=0.237 Sum_probs=84.2
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...... +..+..+.+.....+.+ .+....+.+|||||+..|.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~ 63 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDP--------------DLAATIGVDFKVKTLTV----DGKKVKLAIWDTAGQERFR 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc--------------ccCCcccceEEEEEEEE----CCEEEEEEEEECCCchhhh
Confidence 68999999999999999997532211 01111222222222222 2344789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~~i 157 (257)
......++.+|++++|+|+++ +|+.... ..+....+... ...+++
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~ 140 (161)
T cd01863 64 TLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK---HNMLFI 140 (161)
T ss_pred hhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH---cCCEEE
Confidence 888888899999999999886 5654221 11112222222 245699
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|++++++.+.
T Consensus 141 ~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 141 ETSAKTRDGVQQAFEELV 158 (161)
T ss_pred EEecCCCCCHHHHHHHHH
Confidence 999999999999887664
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-16 Score=139.50 Aligned_cols=130 Identities=22% Similarity=0.256 Sum_probs=93.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|++|+|||||+|+|++....+. ...+|.|.+.....+.+.+ ..+.+|||||+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~-------------~~~~gtt~~~~~~~~~~~~------~~~~lvDT~G~~ 232 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIV-------------SDIAGTTRDSIDTPFERDG------QKYTLIDTAGIR 232 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceee-------------cCCCCceEEEEEEEEEECC------eeEEEEECCCCC
Confidence 467899999999999999999987543332 2245677776555555554 678999999975
Q ss_pred cc----------H-HHHHHhhhhcceEEEEEecCc--------------------------cCCCCCC-HHHHHHHHHHH
Q psy12244 107 DF----------S-NEVTRSLAACQGVVLLIDANQ--------------------------VDLKNAN-PEACEEQLQTL 148 (257)
Q Consensus 107 ~~----------~-~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~~~~~~~ 148 (257)
+. . ..+..+++.+|++|+|+|+.. +|+.... .++..+++...
T Consensus 233 ~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~ 312 (435)
T PRK00093 233 RKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRR 312 (435)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHh
Confidence 42 1 223457789999999999997 6664321 33444555554
Q ss_pred hC-CCccceEEecccccccccccccccC
Q psy12244 149 FN-IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 149 ~~-~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+. ....|++++||++|.|++++++.+.
T Consensus 313 l~~~~~~~i~~~SA~~~~gv~~l~~~i~ 340 (435)
T PRK00093 313 LPFLDYAPIVFISALTGQGVDKLLEAID 340 (435)
T ss_pred cccccCCCEEEEeCCCCCCHHHHHHHHH
Confidence 42 3456899999999999999988775
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-16 Score=123.78 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=86.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|....-.. ...|.......+.+.+ ..+.+|||||+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-----------------~~~t~~~~~~~~~~~~------~~~~~~D~~G~ 71 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-----------------HQPTQHPTSEELAIGN------IKFTTFDLGGH 71 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-----------------cCCccccceEEEEECC------EEEEEEECCCC
Confidence 455789999999999999999996522110 0112222223333333 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC---
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI--- 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~--- 151 (257)
..+...+..++..+|++++|+|+++ +|+.... ..+++.+.++.
T Consensus 72 ~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~l~l~~~ 148 (184)
T smart00178 72 QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA---SEDELRYALGLTNT 148 (184)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC---CHHHHHHHcCCCcc
Confidence 9998888899999999999999976 4543221 12233333322
Q ss_pred ---------CccceEEecccccccccccccccC
Q psy12244 152 ---------DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ---------~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
....++++||++|.|+++++++|.
T Consensus 149 ~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~ 181 (184)
T smart00178 149 TGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLS 181 (184)
T ss_pred cccccccCCceeEEEEeecccCCChHHHHHHHH
Confidence 233589999999999999998875
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-16 Score=147.24 Aligned_cols=104 Identities=47% Similarity=0.742 Sum_probs=86.8
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
.++.+||+++||.++|||||+++|++..+.+... ...+.+|..+.|+++|+|+........+.. +...++++||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~--~~~~~~i~liDT 93 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY--EGNEYLINLIDT 93 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee--cCCceEEEEEeC
Confidence 3568999999999999999999999987776543 334568889999999999987665543322 344589999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|||.+|...+..+++.+|++|+|+|+..
T Consensus 94 PG~~~f~~~~~~al~~aD~~llVvda~~ 121 (720)
T TIGR00490 94 PGHVDFGGDVTRAMRAVDGAIVVVCAVE 121 (720)
T ss_pred CCccccHHHHHHHHHhcCEEEEEEecCC
Confidence 9999999999999999999999999976
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=141.08 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=91.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+++|++|+|||||+|+|++...... +...|.|.+.....+.+.+ ..+.||||||+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~-------------s~~~gtT~d~~~~~~~~~~------~~~~l~DTaG~~ 270 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV-------------DDVAGTTVDPVDSLIELGG------KTWRFVDTAGLR 270 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc-------------cCCCCccCCcceEEEEECC------EEEEEEECCCcc
Confidence 468999999999999999999976433221 2245667666555566655 678899999963
Q ss_pred c----------cHHH-HHHhhhhcceEEEEEecCc--------------------------cCCCCCC-HHHHHHHHHHH
Q psy12244 107 D----------FSNE-VTRSLAACQGVVLLIDANQ--------------------------VDLKNAN-PEACEEQLQTL 148 (257)
Q Consensus 107 ~----------~~~~-~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~~~~~~~ 148 (257)
+ |... ...+++.+|++++|+|+++ +|+...+ .....+++.+.
T Consensus 271 ~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~ 350 (472)
T PRK03003 271 RRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRE 350 (472)
T ss_pred ccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHh
Confidence 2 2221 2345688999999999987 7775432 22333444444
Q ss_pred hC-CCccceEEecccccccccccccccCC
Q psy12244 149 FN-IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~-~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+. ...+|++++||++|.|++++++.+.+
T Consensus 351 l~~~~~~~~~~~SAk~g~gv~~lf~~i~~ 379 (472)
T PRK03003 351 LAQVPWAPRVNISAKTGRAVDKLVPALET 379 (472)
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 42 34468999999999999999988863
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-16 Score=121.27 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=83.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+... +..+....+..+.....+.+ ++..+.+.+|||||+++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~ 63 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--------------FPERTEATIGVDFRERTVEI----DGERIKVQLWDTAGQER 63 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--------------CCCccccceeEEEEEEEEEE----CCeEEEEEEEeCCChHH
Confidence 4689999999999999999996421 11111222222322223333 44557899999999998
Q ss_pred cHH-HHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 108 FSN-EVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 108 ~~~-~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
|.. .+...++.+|++++|+|+++ +|+.... .....+++.+.. .
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~ 140 (170)
T cd04115 64 FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAH---S 140 (170)
T ss_pred HHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHc---C
Confidence 874 46667889999999999987 4442211 122223333322 3
Q ss_pred cceEEecccc---cccccccccccC
Q psy12244 154 KSVLRIWHRR---CFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~---g~gi~~l~~~i~ 175 (257)
.+++++||++ +.|+++++..+.
T Consensus 141 ~~~~e~Sa~~~~~~~~i~~~f~~l~ 165 (170)
T cd04115 141 MPLFETSAKDPSENDHVEAIFMTLA 165 (170)
T ss_pred CcEEEEeccCCcCCCCHHHHHHHHH
Confidence 5799999999 777877776554
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=123.59 Aligned_cols=125 Identities=17% Similarity=0.225 Sum_probs=85.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEecee-eEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQT-ASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|..|+|||||+++++...- .. +...|+.... ..+.. ++....+.||||||+.+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f--~~--------------~~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 62 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--PD--------------YHDPTIEDAYKQQARI----DNEPALLDILDTAGQAE 62 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CC--------------CcCCcccceEEEEEEE----CCEEEEEEEEeCCCchh
Confidence 5799999999999999999975221 10 0111221111 11222 44557899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-H-HHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-P-EACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~-~~~~~~~~~~~~~~~~ 154 (257)
|...+..+++.+|++|+|+|.++ +|+.... . .+...++.+.+ .+
T Consensus 63 ~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~---~~ 139 (172)
T cd04141 63 FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF---NC 139 (172)
T ss_pred hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh---CC
Confidence 99999999999999999999988 4543211 0 11112222222 35
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.||+++|++|..
T Consensus 140 ~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 140 PFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred EEEEEecCCCCCHHHHHHHHHH
Confidence 7999999999999999988863
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-16 Score=121.95 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=85.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|.+..... ...|.......+.+.+ ..+.+|||||+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-----------------~~~t~g~~~~~i~~~~------~~~~~~D~~G~ 68 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-----------------ITPTQGFNIKTVQSDG------FKLNVWDIGGQ 68 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-----------------cCCCCCcceEEEEECC------EEEEEEECCCC
Confidence 346789999999999999999996531100 0112222222344433 78899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCc-
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDK- 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~- 153 (257)
..+...+...++.+|++++|+|+.+ +|+.... ..+++.+.++...
T Consensus 69 ~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~i~~~l~~~~~ 145 (173)
T cd04155 69 RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA---PAEEIAEALNLHDL 145 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC---CHHHHHHHcCCccc
Confidence 9998888888999999999999975 3442211 1223333343321
Q ss_pred ----cceEEecccccccccccccccC
Q psy12244 154 ----KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ----~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|+|+++++++|.
T Consensus 146 ~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 146 RDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred CCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 2478999999999999998876
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-16 Score=126.76 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=81.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|++..- ..+..+..+.+.....+.+ ++..+.+.||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f--------------~~~~~pt~~~~~~~~~i~~----~~~~~~l~i~Dt~G~~~~~ 63 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF--------------PEEYIPTEHRRLYRPAVVL----SGRVYDLHILDVPNMQRYP 63 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC--------------CcccCCccccccceeEEEE----CCEEEEEEEEeCCCcccCC
Confidence 699999999999999999965221 1111111211211112222 3455789999999986542
Q ss_pred H--------HHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCHHHHHHHHHHH
Q psy12244 110 N--------EVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANPEACEEQLQTL 148 (257)
Q Consensus 110 ~--------~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~~~~~~~~~~~ 148 (257)
. .....+..+|++|+|+|+++ +|+..... ...+.++..
T Consensus 64 ~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~-~~~~~~~~~ 142 (198)
T cd04142 64 GTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF-APRHVLSVL 142 (198)
T ss_pred ccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccc-ccHHHHHHH
Confidence 1 13345788999999999987 44422211 011122221
Q ss_pred hC-CCccceEEecccccccccccccccCCCcc
Q psy12244 149 FN-IDKKSVLRIWHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 149 ~~-~~~~~~i~iSa~~g~gi~~l~~~i~~~~~ 179 (257)
.. ...++++++||++|.|++++++.+....+
T Consensus 143 ~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 143 VRKSWKCGYLECSAKYNWHILLLFKELLISAT 174 (198)
T ss_pred HHHhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 11 12467999999999999999988875443
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-16 Score=123.99 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=84.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...-... +..+.+........+.. ++....+.+|||||+.+|.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~-------------~~~~t~~~~~~~~~~~~----~~~~~~l~i~D~~G~~~~~ 64 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVG-------------PYQNTIGAAFVAKRMVV----GERVVTLGIWDTAGSERYE 64 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCc-------------CcccceeeEEEEEEEEE----CCEEEEEEEEECCCchhhh
Confidence 699999999999999999975321100 00111111111122222 3455788999999999988
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC---HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN---PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~---~~~~~~~~~~~~~~~~~~~i 157 (257)
......++.+|++++|+|.++ +|+.+.. .+...+++.++......+++
T Consensus 65 ~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (193)
T cd04118 65 AMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF 144 (193)
T ss_pred hhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE
Confidence 888788889999999999976 5553211 01011122222111124689
Q ss_pred EecccccccccccccccCCC
Q psy12244 158 RIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~ 177 (257)
++||++|.|++++++.|...
T Consensus 145 ~~Sa~~~~gv~~l~~~i~~~ 164 (193)
T cd04118 145 ETSSKTGQNVDELFQKVAED 164 (193)
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988743
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-16 Score=122.48 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=86.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..|+|||||+++|+...-. .+..+..+.+.....+.+ ++....+.+|||||+.+|.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~g~~~~~ 63 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFS--------------ESTKSTIGVDFKIKTVYI----ENKIIKLQIWDTNGQERFR 63 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEE----CCEEEEEEEEECCCcHHHH
Confidence 6999999999999999999642211 001111222222222332 3345788999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
..+...++.+|++++|+|+++ +|+.+.. .......+.+.++ .+++
T Consensus 64 ~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~---~~~~ 140 (188)
T cd04125 64 SLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLN---IPFF 140 (188)
T ss_pred hhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcC---CeEE
Confidence 888899999999999999987 5654221 1122223333333 3699
Q ss_pred EecccccccccccccccCCC
Q psy12244 158 RIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~ 177 (257)
++||++|.|+++++++|...
T Consensus 141 evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 141 ETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999888643
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-16 Score=124.02 Aligned_cols=124 Identities=13% Similarity=0.185 Sum_probs=83.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+|+++|.+|+|||||+++|+...- ... ...|.... ...+.+ ++....+.||||||+++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~--------------~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~ 60 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VET--------------YDPTIEDSYRKQVVV----DGQPCMLEVLDTAGQEEY 60 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--Ccc--------------CCCchHhhEEEEEEE----CCEEEEEEEEECCCchhh
Confidence 489999999999999999975221 100 00111100 111222 344467999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCH--HHHHHHHHHHhCCCc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANP--EACEEQLQTLFNIDK 153 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~--~~~~~~~~~~~~~~~ 153 (257)
......+++.+|++|+|+|.++ +|+..... ......+.+.++
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~--- 137 (190)
T cd04144 61 TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG--- 137 (190)
T ss_pred HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC---
Confidence 9988899999999999999977 45432110 111122233233
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.+..
T Consensus 138 ~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 138 CEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred CEEEEecCCCCCCHHHHHHHHHH
Confidence 46999999999999999988874
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=126.29 Aligned_cols=130 Identities=17% Similarity=0.191 Sum_probs=88.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|+.|+|||||+++|+...-.. .....+..+.....+.+ .+....+.+|||||+
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~--------------~~~~ti~~~~~~~~i~~----~~~~i~l~l~Dt~G~ 65 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMITI----DNKPIKLQIWDTAGQ 65 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCCccceEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 345789999999999999999997532111 01112222222222333 334467899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+.|...+...++.+|++|+|+|++. +|+.... ..+..+++.+.++
T Consensus 66 ~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 142 (210)
T PLN03108 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--- 142 (210)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC---
Confidence 9999888889999999999999987 4553321 1111222233223
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++|+++..
T Consensus 143 ~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 143 LIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999877764
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-16 Score=124.98 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=87.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|..++|||||+.+++...- .. +...|+...+. ....- ++....+.+|||+|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f--------------~~--~~~pT~~~~~~-~~~~~--~~~~~~l~iwDtaG~ 63 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCF--------------PE--NYVPTVFENYT-ASFEI--DTQRIELSLWDTSGS 63 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCC--------------CC--ccCCceeeeeE-EEEEE--CCEEEEEEEEECCCc
Confidence 3456899999999999999999965221 11 11122221111 11111 455688999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC-----------C---HHHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA-----------N---PEAC 141 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~-----------~---~~~~ 141 (257)
+.|......+++.+|++|+|+|.++ +|+.+. . ..+.
T Consensus 64 e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 64 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHH
Confidence 9999888889999999999999988 565321 0 0111
Q ss_pred HHHHHHHhCCCccceEEeccccccc-ccccccccCC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFS-CADCHRSLDS 176 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~g-i~~l~~~i~~ 176 (257)
.+++++.++ ..+++++||++|.| |+++|+.+.+
T Consensus 144 ~~~~a~~~~--~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 144 GANMAKQIG--AATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHHHHHcC--CCEEEECCcCCCCCCHHHHHHHHHH
Confidence 223333323 23799999999998 9999876653
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-16 Score=121.11 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=79.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc--
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-- 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-- 107 (257)
+|+++|++|+|||||+++|.+..... ....+.|.......+.+.. ...+.||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v--------------~~~~~~t~~~~~~~~~~~~-----~~~~~l~DtpG~~~~~ 62 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI--------------ADYPFTTLVPNLGVVRVDD-----GRSFVVADIPGLIEGA 62 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc--------------cCCCccccCCcceEEEcCC-----CCeEEEEecCcccCcc
Confidence 68999999999999999996532211 0112334444444444433 13899999999742
Q ss_pred -----cHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 108 -----FSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 108 -----~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
+...+...+..+|++++|+|++. +|+.+. ....+.+...+
T Consensus 63 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~ 140 (170)
T cd01898 63 SEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKELL 140 (170)
T ss_pred cccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHHHHH
Confidence 33444455667999999999963 333221 11122222222
Q ss_pred CC-CccceEEecccccccccccccccC
Q psy12244 150 NI-DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~-~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.. ...+++++||++|.|+++++++|.
T Consensus 141 ~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 167 (170)
T cd01898 141 KELWGKPVFPISALTGEGLDELLRKLA 167 (170)
T ss_pred hhCCCCCEEEEecCCCCCHHHHHHHHH
Confidence 22 245689999999999999988775
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=121.24 Aligned_cols=127 Identities=14% Similarity=0.099 Sum_probs=85.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceee-EEEeecccCCccEEEEEeCCCCCccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA-SLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+|+++|..|+|||||+++|++..-. .+ ...|....+. .+... ++....+.+|||||+++|
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--------------~~--~~~t~~~~~~~~i~~~---~~~~~~l~i~Dt~G~~~~ 62 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--------------EE--YVPTVFENYVTNIQGP---NGKIIELALWDTAGQEEY 62 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--------------CC--CCCeeeeeeEEEEEec---CCcEEEEEEEECCCchhH
Confidence 6999999999999999999753210 00 1112211111 12211 244578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC------HHHHHHHHHHHhCCC
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN------PEACEEQLQTLFNID 152 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~------~~~~~~~~~~~~~~~ 152 (257)
.......++.+|++++|+|+++ .|+.... .....+++...++.
T Consensus 63 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~- 141 (187)
T cd04132 63 DRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA- 141 (187)
T ss_pred HHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC-
Confidence 8888888999999999999987 4543211 01122223332332
Q ss_pred ccceEEecccccccccccccccCCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
.+++++||++|.|++++++.+...
T Consensus 142 -~~~~e~Sa~~~~~v~~~f~~l~~~ 165 (187)
T cd04132 142 -FAYLECSAKTMENVEEVFDTAIEE 165 (187)
T ss_pred -cEEEEccCCCCCCHHHHHHHHHHH
Confidence 268999999999999999888744
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-16 Score=134.60 Aligned_cols=181 Identities=19% Similarity=0.206 Sum_probs=131.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecc--------------
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSI-------------- 89 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-------------- 89 (257)
....+|+..||+++|||||++.|+ ++..+.. ....+.|.+++|-++|.|.+.....+.|.+-
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~Lv--tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLV--TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEE--ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 345679999999999999999984 5655555 3456789999999999999988888777541
Q ss_pred ---cCCccEEEEEeCCCCCcccHHHHHHhh--hhcceEEEEEecCc--------------------------cCCCCCC-
Q psy12244 90 ---LDGEEYLLNLIDTPGHVDFSNEVTRSL--AACQGVVLLIDANQ--------------------------VDLKNAN- 137 (257)
Q Consensus 90 ---~~~~~~~~~liDtpG~~~~~~~~~~~~--~~aD~~ilVvd~~~--------------------------~D~~~~~- 137 (257)
.+.....+.|+||-||+.|...++.++ ++.|..+|++.|++ +|+.+.+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr 272 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDR 272 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHH
Confidence 011246789999999999999999998 56899999999998 7775433
Q ss_pred HHHHHHHHHHHhC-------------------------CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCC
Q psy12244 138 PEACEEQLQTLFN-------------------------IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATP 192 (257)
Q Consensus 138 ~~~~~~~~~~~~~-------------------------~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~ 192 (257)
++.+.+++...+. ....|+|.+|+.+|+|++-|.+.+..+|.-. .-....
T Consensus 273 ~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~rr-----~~~d~g 347 (527)
T COG5258 273 FQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKRR-----RWDDEG 347 (527)
T ss_pred HHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCccc-----ccCCCC
Confidence 5555555544431 1124899999999999998877776544211 112333
Q ss_pred CCCcchhhhcceeeEeeeccc
Q psy12244 193 YEDIPIARIRNFSIIAHVDHG 213 (257)
Q Consensus 193 ~~~~~~~~~~~~~~~G~v~~G 213 (257)
++.|.+++++.+..+|.+.+|
T Consensus 348 ~flmYId~iYsVtGVGtVvsG 368 (527)
T COG5258 348 PFLMYIDKIYSVTGVGTVVSG 368 (527)
T ss_pred CeEEEEEeeEEEeeeEEEEee
Confidence 456778887777666665555
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=118.43 Aligned_cols=128 Identities=12% Similarity=0.124 Sum_probs=84.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+++|||||+++|....... ..+..+.+..+.....+.+. ++....+.+|||||+..+.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~------------~~~~~~t~~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~ 66 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVF------------PKNYLMTTGCDFVVKEVPVD---TDNTVELFIFDSAGQELYS 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc------------CccCCCceEEEEEEEEEEeC---CCCEEEEEEEECCCHHHHH
Confidence 69999999999999999996421111 11111112222212222221 2345789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC-H-HHHHHHHHHHhCCCccceEE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN-P-EACEEQLQTLFNIDKKSVLR 158 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~-~-~~~~~~~~~~~~~~~~~~i~ 158 (257)
..+...+..+|++++|+|.++ +|+.... . ....+.+...++ .++++
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~ 143 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ---LKFFK 143 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC---CeEEE
Confidence 888889999999999999986 4553221 1 111122222222 46899
Q ss_pred ecccccccccccccccC
Q psy12244 159 IWHRRCFSCADCHRSLD 175 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~ 175 (257)
+||++|.|++++++.|.
T Consensus 144 ~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 144 TSALRGVGYEEPFESLA 160 (164)
T ss_pred EeCCCCCChHHHHHHHH
Confidence 99999999999988765
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.2e-16 Score=119.57 Aligned_cols=124 Identities=15% Similarity=0.209 Sum_probs=83.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceE-eceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITV-KAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|.+|+|||||+++++... .... .. .|. +.....+.. ++....+.||||||+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~------------~~--~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT--FIEK------------YD--PTIEDFYRKEIEV----DSSPSVLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCC------------CC--CchhheEEEEEEE----CCEEEEEEEEECCCccc
Confidence 479999999999999999996521 1110 00 111 111111222 34446788999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
|...+...++.+|++++|+|.++ +|+.... .......+...++ .
T Consensus 62 ~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 138 (163)
T cd04176 62 FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG---C 138 (163)
T ss_pred ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC---C
Confidence 99988889999999999999987 4542211 0111223333333 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++++.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 139 PFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EEEEecCCCCCCHHHHHHHHH
Confidence 689999999999999988765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=121.96 Aligned_cols=130 Identities=18% Similarity=0.092 Sum_probs=87.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|..++|||||+.+++...- .. +...|+...+. ..+.. ++....+.+|||||+++|
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f--------------~~--~~~~t~~~~~~-~~~~~--~~~~~~l~i~Dt~G~e~~ 64 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF--------------PK--EYIPTVFDNYS-AQTAV--DGRTVSLNLWDTAGQEEY 64 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--------------Cc--CCCCceEeeeE-EEEEE--CCEEEEEEEEECCCchhh
Confidence 5799999999999999999965211 11 11123321111 11111 556688999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--HH---------HHHHHHH
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--EA---------CEEQLQT 147 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--~~---------~~~~~~~ 147 (257)
...+..+++.+|++|+|+|.++ .|+.+... +. ..++.++
T Consensus 65 ~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 144 (191)
T cd01875 65 DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA 144 (191)
T ss_pred hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence 9888889999999999999988 55532210 00 0011111
Q ss_pred Hh-CCCccceEEecccccccccccccccCCC
Q psy12244 148 LF-NIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 148 ~~-~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+. .....+++++||++|.||+++|+.+.+.
T Consensus 145 ~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~ 175 (191)
T cd01875 145 LAKQIHAVKYLECSALNQDGVKEVFAEAVRA 175 (191)
T ss_pred HHHHcCCcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 11 1122469999999999999999988753
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.1e-16 Score=126.26 Aligned_cols=86 Identities=24% Similarity=0.339 Sum_probs=61.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||.|.+++....+... +. ++++....+++....+++.|+||||.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~-------------K~------~TTr~~ilgi~ts~eTQlvf~DTPGl 130 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR-------------KV------HTTRHRILGIITSGETQLVFYDTPGL 130 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccc-------------cc------cceeeeeeEEEecCceEEEEecCCcc
Confidence 467899999999999999999998866554332 22 23333333333445589999999995
Q ss_pred cc------------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VD------------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~------------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.. +..+...++..||++++|+|+.+
T Consensus 131 vs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 131 VSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA 167 (379)
T ss_pred cccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC
Confidence 32 22344457788999999999994
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-16 Score=121.02 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=83.9
Q ss_pred EEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH--
Q psy12244 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN-- 110 (257)
Q Consensus 33 ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-- 110 (257)
++|++|+|||||+++|++... . ....++.|.+.....+.+.+ ..+.+|||||+.++..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~-------------~~~~~~~t~~~~~~~~~~~~------~~~~liDtpG~~~~~~~~ 60 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-K-------------VGNWPGVTVEKKEGRFKLGG------KEIEIVDLPGTYSLSPYS 60 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-c-------------ccCCCCcccccceEEEeeCC------eEEEEEECCCccccCCCC
Confidence 589999999999999965321 1 11235667776666666654 6899999999987653
Q ss_pred ----HHHHhh--hhcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHHHHhCCCccceEEe
Q psy12244 111 ----EVTRSL--AACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 111 ----~~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~~i~i 159 (257)
.....+ ..+|++++|+|+.. +|+.... .....+.+...++ .+++++
T Consensus 61 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~i 137 (158)
T cd01879 61 EDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLG---VPVVPT 137 (158)
T ss_pred hhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhC---CCeEEE
Confidence 233444 48999999999987 5664332 1222234444333 469999
Q ss_pred cccccccccccccccC
Q psy12244 160 WHRRCFSCADCHRSLD 175 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~ 175 (257)
||++|.|++++++.+.
T Consensus 138 Sa~~~~~~~~l~~~l~ 153 (158)
T cd01879 138 SARKGEGIDELKDAIA 153 (158)
T ss_pred EccCCCCHHHHHHHHH
Confidence 9999999999988775
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-16 Score=123.37 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=86.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|..++|||+|+.+++... . ..+ ...|+.... ...+.. ++....+.||||+|+++|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~--f------------~~~--~~~Ti~~~~-~~~~~~--~~~~v~l~i~Dt~G~~~~ 62 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK--F------------PTD--YIPTVFDNF-SANVSV--DGNTVNLGLWDTAGQEDY 62 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC--C------------CCC--CCCcceeee-EEEEEE--CCEEEEEEEEECCCCccc
Confidence 479999999999999999996421 1 111 112322111 111222 456689999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC------------HHHHHHHHH
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN------------PEACEEQLQ 146 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~------------~~~~~~~~~ 146 (257)
......+++.+|++|+|+|.++ +|+.+.. ..+..+++.
T Consensus 63 ~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 63 NRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred cccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 9888889999999999999987 6663321 011122233
Q ss_pred HHhCCCccceEEecccccccccccccccCC
Q psy12244 147 TLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 147 ~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+..+ ..+++++||++|.||+++|+.+.+
T Consensus 143 ~~~~--~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 143 KQIG--AAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred HHcC--CCEEEECCCCcccCHHHHHHHHHH
Confidence 3222 225899999999999999988774
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=116.98 Aligned_cols=123 Identities=18% Similarity=0.135 Sum_probs=81.6
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN 110 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 110 (257)
|+++|++|+|||||+++|.+.... .+..+ |.......+.+.. ..+.+|||||+..|..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~--------------~~~~~--t~~~~~~~~~~~~------~~~~~~D~~g~~~~~~ 59 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS--------------EDTIP--TVGFNMRKVTKGN------VTLKVWDLGGQPRFRS 59 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC--------------cCccC--CCCcceEEEEECC------EEEEEEECCCCHhHHH
Confidence 799999999999999999653211 01111 2222222233322 7899999999999999
Q ss_pred HHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHH-HHhCCCccceE
Q psy12244 111 EVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQ-TLFNIDKKSVL 157 (257)
Q Consensus 111 ~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~-~~~~~~~~~~i 157 (257)
.+...+..+|++++|+|++. +|+.... .....+.+. ........+++
T Consensus 60 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (159)
T cd04159 60 MWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCY 139 (159)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEE
Confidence 89999999999999999986 3432221 111121111 00111234689
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++|+++|.|+++++++|.
T Consensus 140 ~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 140 SISCKEKTNIDIVLDWLI 157 (159)
T ss_pred EEEeccCCChHHHHHHHh
Confidence 999999999999988775
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-16 Score=118.73 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=84.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+++|+....... ..+..+.......+.+ .+....+.+|||||+..+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~g~~~~ 62 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEK--------------HESTTQASFFQKTVNI----GGKRIDLAIWDTAGQERY 62 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--------------cCCccceeEEEEEEEE----CCEEEEEEEEECCchHHH
Confidence 3799999999999999999976332110 0111111211222222 233467999999999998
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
...+...++.+|++++|+|+++ +|+.... ..+..+++.+.+ ..++
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~ 139 (162)
T cd04123 63 HALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSV---GAKH 139 (162)
T ss_pred HHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc---CCEE
Confidence 8888888899999999999987 5554221 112222223322 3458
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|++++++++.
T Consensus 140 ~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 140 FETSAKTGKGIEELFLSLA 158 (162)
T ss_pred EEEeCCCCCCHHHHHHHHH
Confidence 9999999999999988775
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-16 Score=121.65 Aligned_cols=125 Identities=16% Similarity=0.074 Sum_probs=83.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|..|+|||||+.+++... ... +...|+... ...+.+ ++....+.||||||+++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~--f~~--------------~~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA--FPG--------------EYIPTVFDNYSANVMV----DGKPVNLGLWDTAGQED 61 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC--------------cCCCcceeeeEEEEEE----CCEEEEEEEEECCCchh
Confidence 479999999999999999996521 111 111121111 111222 45557899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--H------------HHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--P------------EACEE 143 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~------------~~~~~ 143 (257)
|...+...++.+|++|+|+|.++ +|+.+.. . .....
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 62 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHH
Confidence 98888888999999999999987 5553211 0 00011
Q ss_pred HHHHHhCCCccceEEecccccccccccccccC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++.+. ....+++++||++|.|++++++.+.
T Consensus 142 ~~~~~--~~~~~~~e~Sa~~~~~i~~~f~~l~ 171 (174)
T cd01871 142 AMAKE--IGAVKYLECSALTQKGLKTVFDEAI 171 (174)
T ss_pred HHHHH--cCCcEEEEecccccCCHHHHHHHHH
Confidence 12222 2234789999999999999988764
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-16 Score=125.51 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=88.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|..++|||+|+.+|+... . ..+.. .|+...+. ..+.. ++....+.||||+|++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~--F------------~~~y~--pTi~~~~~-~~i~~--~~~~v~l~iwDTaG~e 72 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC--Y------------PETYV--PTVFENYT-AGLET--EEQRVELSLWDTSGSP 72 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC--C------------CCCcC--CceeeeeE-EEEEE--CCEEEEEEEEeCCCch
Confidence 45689999999999999999996521 1 11111 12211111 11111 4556889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC------------C--HHHHH
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA------------N--PEACE 142 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~------------~--~~~~~ 142 (257)
+|......+++.+|++|+|+|.++ +|+... . ..+..
T Consensus 73 ~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~ 152 (232)
T cd04174 73 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQG 152 (232)
T ss_pred hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHH
Confidence 999888889999999999999987 666421 0 01112
Q ss_pred HHHHHHhCCCccceEEecccccc-cccccccccCCC
Q psy12244 143 EQLQTLFNIDKKSVLRIWHRRCF-SCADCHRSLDST 177 (257)
Q Consensus 143 ~~~~~~~~~~~~~~i~iSa~~g~-gi~~l~~~i~~~ 177 (257)
+++.+.++. .+++++||++|. ||+++|+.+...
T Consensus 153 ~~~a~~~~~--~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 153 CALAKQLGA--EVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred HHHHHHcCC--CEEEEccCCcCCcCHHHHHHHHHHH
Confidence 233333332 258999999998 899999888643
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=118.62 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=57.5
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN 110 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 110 (257)
|+++|..|+|||||+++|+..... . ....|.......+.+. ...+.+|||||+.+|..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~--------------~~~pt~g~~~~~i~~~------~~~l~i~Dt~G~~~~~~ 59 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--E--------------SVVPTTGFNSVAIPTQ------DAIMELLEIGGSQNLRK 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--c--------------cccccCCcceEEEeeC------CeEEEEEECCCCcchhH
Confidence 789999999999999999653210 0 0111222222223232 37899999999999999
Q ss_pred HHHHhhhhcceEEEEEecCc
Q psy12244 111 EVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 111 ~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+..+++.+|++++|+|+++
T Consensus 60 ~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 60 YWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred HHHHHHhhCCEEEEEEECCC
Confidence 99999999999999999986
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-16 Score=121.90 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=83.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceee-EEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA-SLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|..|+|||||+.+|++.. . .. ....|+..... .+.+ ++..+.+.||||||+++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f------------~~--~~~pt~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--F------------PS--EYVPTVFDNYAVTVMI----GGEPYTLGLFDTAGQED 61 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--C------------CC--CCCCceeeeeEEEEEE----CCEEEEEEEEECCCccc
Confidence 479999999999999999996521 1 00 11122221111 1222 44558899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH-----------HHHHHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP-----------EACEEQLQ 146 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~-----------~~~~~~~~ 146 (257)
|...+..+++.+|++|+|+|.++ +|+..... ....++.+
T Consensus 62 ~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~ 141 (175)
T cd01874 62 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGE 141 (175)
T ss_pred hhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHH
Confidence 98888888999999999999987 44422100 00001111
Q ss_pred HHh-CCCccceEEecccccccccccccccC
Q psy12244 147 TLF-NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 147 ~~~-~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.. .....+++++||++|.|++++++.+.
T Consensus 142 ~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~ 171 (175)
T cd01874 142 KLARDLKAVKYVECSALTQKGLKNVFDEAI 171 (175)
T ss_pred HHHHHhCCcEEEEecCCCCCCHHHHHHHHH
Confidence 111 12234699999999999999988765
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-16 Score=122.49 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=84.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEecee-eEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQT-ASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|..++|||||+++|+...- ..+.. .|+...+ ..+.. ++....+.+|||||++.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f--------------~~~~~--~t~~~~~~~~~~~----~~~~~~l~iwDt~G~~~ 61 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--------------PETYV--PTVFENYTASFEI----DEQRIELSLWDTSGSPY 61 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--------------CCCcC--CceEEEEEEEEEE----CCEEEEEEEEECCCchh
Confidence 4699999999999999999965311 11111 1221111 11222 44568899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC-----------C---HHHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA-----------N---PEACEE 143 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~-----------~---~~~~~~ 143 (257)
|......+++.+|++|+|+|.++ +|+.+. . ..+..+
T Consensus 62 ~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 62 YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHH
Confidence 98888888999999999999987 565321 0 011122
Q ss_pred HHHHHhCCCccceEEeccccccc-ccccccccCC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFS-CADCHRSLDS 176 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~g-i~~l~~~i~~ 176 (257)
++.+.++ ..+++++||++|+| |+++|..+.+
T Consensus 142 ~~a~~~~--~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 142 AIAKQLG--AEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHHHHhC--CCEEEECccCcCCcCHHHHHHHHHH
Confidence 2333323 23689999999995 9999877653
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=118.23 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=84.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|.+|+|||||+++|.+..... . ..+ |.... ...+.+ ++....+.+|||||+.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~----------~----~~~--t~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE----------S----YDP--TIEDSYRKQVEI----DGRQCDLEILDTAGTEQ 61 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----------c----cCC--cchheEEEEEEE----CCEEEEEEEEeCCCccc
Confidence 469999999999999999997532110 0 001 11111 111222 33446889999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH--HHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP--EACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~--~~~~~~~~~~~~~~~~ 154 (257)
|...+...++.+|++++|+|.++ +|+..... .+....+.+.+ ...
T Consensus 62 ~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~ 139 (168)
T cd04177 62 FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQW--GNV 139 (168)
T ss_pred chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHc--CCc
Confidence 99999999999999999999876 55432211 11112222322 235
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++++.
T Consensus 140 ~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 140 PFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred eEEEeeCCCCCCHHHHHHHHH
Confidence 799999999999999988876
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.5e-16 Score=117.93 Aligned_cols=119 Identities=21% Similarity=0.255 Sum_probs=80.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+........ ..++.|.+.....+.+.. ..+.+|||||+.++.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~------~~~~i~DtpG~~~~~ 63 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVS-------------DIAGTTRDVIEESIDIGG------IPVRLIDTAGIRETE 63 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEecc-------------CCCCCccceEEEEEEeCC------EEEEEEECCCcCCCc
Confidence 6899999999999999999764322111 123444444344444433 689999999987753
Q ss_pred H--------HHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 110 N--------EVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~--------~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
. .....+..+|++++|+|+.. +|+...... .......+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~ 135 (157)
T cd04164 64 DEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL--------LSLLAGKPII 135 (157)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc--------ccccCCCceE
Confidence 2 23456678999999999995 443221111 1112235799
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.|+++++++|.
T Consensus 136 ~~Sa~~~~~v~~l~~~l~ 153 (157)
T cd04164 136 AISAKTGEGLDELKEALL 153 (157)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999988765
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.3e-16 Score=133.52 Aligned_cols=124 Identities=18% Similarity=0.245 Sum_probs=93.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
-.+++|+|+||+|||||+|+|+++..+++.. -+|.|.+.-...+...+ +.+.++||+|..+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd-------------I~GTTRDviee~i~i~G------~pv~l~DTAGiRe 277 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTD-------------IAGTTRDVIEEDINLNG------IPVRLVDTAGIRE 277 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecC-------------CCCCccceEEEEEEECC------EEEEEEecCCccc
Confidence 3579999999999999999999988877554 67899999888888888 8999999999865
Q ss_pred c--------HHHHHHhhhhcceEEEEEecCc-------------------------cCCCCCCHHHHHHHHHHHhCCCcc
Q psy12244 108 F--------SNEVTRSLAACQGVVLLIDANQ-------------------------VDLKNANPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~--------~~~~~~~~~~aD~~ilVvd~~~-------------------------~D~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
- .......+..||++++|+|++. +|+..... ...+ + + ....
T Consensus 278 t~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~---~~~~-~-~-~~~~ 351 (454)
T COG0486 278 TDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIE---LESE-K-L-ANGD 351 (454)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccc---cchh-h-c-cCCC
Confidence 2 2234456789999999999997 11111100 0000 0 0 1223
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++.+||++|+|++.|.+.|..
T Consensus 352 ~~i~iSa~t~~Gl~~L~~~i~~ 373 (454)
T COG0486 352 AIISISAKTGEGLDALREAIKQ 373 (454)
T ss_pred ceEEEEecCccCHHHHHHHHHH
Confidence 5899999999999999998884
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=129.68 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=84.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+...|+++|++|+|||||+|+|++....+... ....|.......... ...++.|+||||+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~-------------~~~tt~~~i~~i~~~------~~~qi~~iDTPG~~ 64 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP-------------KPQTTRHRIRGIVTE------DDAQIIFVDTPGIH 64 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCC-------------CCCcccccEEEEEEc------CCceEEEEECCCCC
Confidence 45679999999999999999998654433221 112222211111111 12689999999986
Q ss_pred cc--------HHHHHHhhhhcceEEEEEecCc--------------------------cCCCCC--CHHHHHHHHHHHhC
Q psy12244 107 DF--------SNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNA--NPEACEEQLQTLFN 150 (257)
Q Consensus 107 ~~--------~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~--~~~~~~~~~~~~~~ 150 (257)
+. .......+..+|++++|+|++. +|+... ......+.+.+.+
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~- 143 (292)
T PRK00089 65 KPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELM- 143 (292)
T ss_pred CchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhC-
Confidence 53 2344556788999999999986 666421 1222333333332
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+++++||++|.|++++++.|..
T Consensus 144 -~~~~i~~iSA~~~~gv~~L~~~L~~ 168 (292)
T PRK00089 144 -DFAEIVPISALKGDNVDELLDVIAK 168 (292)
T ss_pred -CCCeEEEecCCCCCCHHHHHHHHHH
Confidence 3457999999999999999988864
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=119.15 Aligned_cols=123 Identities=23% Similarity=0.208 Sum_probs=83.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+++|||||+++|.+. ... +...|+......+.+.. ..+.+|||||+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~--------------~~~~t~g~~~~~~~~~~------~~~~i~D~~G~~~~~ 57 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK--------------KVAPTVGFTPTKLRLDK------YEVCIFDLGGGANFR 57 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc--------------cccCcccceEEEEEECC------EEEEEEECCCcHHHH
Confidence 4899999999999999999642 100 11123322233344433 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHH--HHHhC--CCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQL--QTLFN--IDK 153 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~--~~~~~--~~~ 153 (257)
..+..+++.+|++++|+|+++ +|+.... ..+..+.+ .+... ...
T Consensus 58 ~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~ 137 (167)
T cd04161 58 GIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSL 137 (167)
T ss_pred HHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCce
Confidence 999999999999999999987 5554432 22222221 11110 112
Q ss_pred cceEEeccccc------ccccccccccC
Q psy12244 154 KSVLRIWHRRC------FSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g------~gi~~l~~~i~ 175 (257)
.+++++||++| .|+++.++||.
T Consensus 138 ~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 138 CHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred EEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 45788999998 78988888775
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.6e-16 Score=112.83 Aligned_cols=129 Identities=17% Similarity=0.264 Sum_probs=91.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..+|+++|+.|+|||.|+.++.+ +..+.. +|-|+...+.....+- ++...++.+|||+|++
T Consensus 6 flfkivlvgnagvgktclvrrftq--glfppg--------------qgatigvdfmiktvev--~gekiklqiwdtagqe 67 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQ--GLFPPG--------------QGATIGVDFMIKTVEV--NGEKIKLQIWDTAGQE 67 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhc--cCCCCC--------------CCceeeeeEEEEEEEE--CCeEEEEEEeeccchH
Confidence 467899999999999999999943 433222 3344443333322222 5677899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhC-CCccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFN-IDKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~-~~~~~ 155 (257)
+|...+.++++.|+++|+|+|.+. +|+.+ ..++-+++.+.+. ....-
T Consensus 68 rfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d--rrevp~qigeefs~~qdmy 145 (213)
T KOG0095|consen 68 RFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD--RREVPQQIGEEFSEAQDMY 145 (213)
T ss_pred HHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh--hhhhhHHHHHHHHHhhhhh
Confidence 999999999999999999999986 45422 2333333333331 12223
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||+..+|++.||..+.
T Consensus 146 fletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 146 FLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hhhhcccchhhHHHHHHHHH
Confidence 78999999999999987665
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=122.02 Aligned_cols=139 Identities=18% Similarity=0.246 Sum_probs=88.7
Q ss_pred CCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccE
Q psy12244 16 KATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEY 95 (257)
Q Consensus 16 ~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~ 95 (257)
+...|..++....++|+++|++|+|||||+++|++..... ......+.|..... ..+ ..
T Consensus 12 ~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~------------~~~~~~~~t~~~~~--~~~-------~~ 70 (196)
T PRK00454 12 SAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLA------------RTSKTPGRTQLINF--FEV-------ND 70 (196)
T ss_pred hhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc------------cccCCCCceeEEEE--Eec-------CC
Confidence 3345777888889999999999999999999997632100 00112233433221 111 15
Q ss_pred EEEEeCCCCCc----------ccHHHHHHhhh---hcceEEEEEecCc--------------------------cCCCCC
Q psy12244 96 LLNLIDTPGHV----------DFSNEVTRSLA---ACQGVVLLIDANQ--------------------------VDLKNA 136 (257)
Q Consensus 96 ~~~liDtpG~~----------~~~~~~~~~~~---~aD~~ilVvd~~~--------------------------~D~~~~ 136 (257)
.+.||||||+. .+......++. .++++++|+|+.. +|+...
T Consensus 71 ~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 71 KLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK 150 (196)
T ss_pred eEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH
Confidence 78999999963 23333333443 3467888888765 555332
Q ss_pred -CHHHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 137 -NPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++..+.+++.++....+++++||++|.|++++++.|.
T Consensus 151 ~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~ 190 (196)
T PRK00454 151 GERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIA 190 (196)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHH
Confidence 133344445555543245799999999999999988876
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=118.87 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=83.1
Q ss_pred CCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEE
Q psy12244 17 ATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYL 96 (257)
Q Consensus 17 ~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~ 96 (257)
+...+++|..+.++|+|+|++|+|||||+|+|++..... . .....+.|..... +.+ + ..
T Consensus 7 ~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~-~-----------~~~~~~~t~~~~~--~~~----~---~~ 65 (179)
T TIGR03598 7 AVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLA-R-----------TSKTPGRTQLINF--FEV----N---DG 65 (179)
T ss_pred eccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-c-----------ccCCCCcceEEEE--EEe----C---Cc
Confidence 344567777888999999999999999999997632110 0 0112233333221 111 1 25
Q ss_pred EEEeCCCCCcc----------cHHHHHHhhh---hcceEEEEEecCc--------------------------cCCCCC-
Q psy12244 97 LNLIDTPGHVD----------FSNEVTRSLA---ACQGVVLLIDANQ--------------------------VDLKNA- 136 (257)
Q Consensus 97 ~~liDtpG~~~----------~~~~~~~~~~---~aD~~ilVvd~~~--------------------------~D~~~~- 136 (257)
+.+|||||+.. +......+++ .+|++++|+|++. +|+...
T Consensus 66 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~ 145 (179)
T TIGR03598 66 FRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKS 145 (179)
T ss_pred EEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHH
Confidence 88999999642 3333333443 4689999999987 676432
Q ss_pred CHHHHHHHHHHHhCCC--ccceEEeccccccccc
Q psy12244 137 NPEACEEQLQTLFNID--KKSVLRIWHRRCFSCA 168 (257)
Q Consensus 137 ~~~~~~~~~~~~~~~~--~~~~i~iSa~~g~gi~ 168 (257)
+.+...+++++.++.. ..++|++||++|+|++
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 146 ELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 2344555666655432 2479999999999985
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-16 Score=122.17 Aligned_cols=130 Identities=19% Similarity=0.163 Sum_probs=85.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceee-EEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA-SLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
++|+++|..|+|||||+++|+...- . .+.. .|+...+. .+.. ++....+.||||||++.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~--~------------~~~~--~t~~~~~~~~i~~----~~~~~~l~i~Dt~G~~~ 60 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF--P------------QVYE--PTVFENYVHDIFV----DGLHIELSLWDTAGQEE 60 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--C------------CccC--CcceeeeEEEEEE----CCEEEEEEEEECCCChh
Confidence 4799999999999999999965211 0 0011 12211111 1111 34457899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHH-----------HHHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEA-----------CEEQLQ 146 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~-----------~~~~~~ 146 (257)
|...+..+++.+|++++|+|.++ +|+....... ..++..
T Consensus 61 ~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 140 (189)
T cd04134 61 FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGL 140 (189)
T ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHH
Confidence 88777778899999999999888 5553321100 011111
Q ss_pred HHh-CCCccceEEecccccccccccccccCCCc
Q psy12244 147 TLF-NIDKKSVLRIWHRRCFSCADCHRSLDSTN 178 (257)
Q Consensus 147 ~~~-~~~~~~~i~iSa~~g~gi~~l~~~i~~~~ 178 (257)
+.. ....++++++||++|.|++++|++|....
T Consensus 141 ~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 141 AVAKRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 111 12235799999999999999999887543
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=111.26 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=90.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.-..+++++|+.|.|||.|+.+++...-. ....+.+.++.+...+.. .++..++.+|||+|+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfk--------------DdssHTiGveFgSrIinV----GgK~vKLQIWDTAGQ 68 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFK--------------DDSSHTIGVEFGSRIVNV----GGKTVKLQIWDTAGQ 68 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhc--------------ccccceeeeeecceeeee----cCcEEEEEEeecccH
Confidence 34678999999999999999999764321 111222333333333332 456689999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
++|...+.++++.|-+++||+|++. -|+.. +.+....+...+..-...-
T Consensus 69 ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~-~R~VtflEAs~FaqEnel~ 147 (214)
T KOG0086|consen 69 ERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELM 147 (214)
T ss_pred HHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh-hhhhhHHHHHhhhccccee
Confidence 9999999999999999999999998 23322 1233333444444334445
Q ss_pred eEEeccccccccccccccc
Q psy12244 156 VLRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i 174 (257)
+.++||++|+|+++.|-..
T Consensus 148 flETSa~TGeNVEEaFl~c 166 (214)
T KOG0086|consen 148 FLETSALTGENVEEAFLKC 166 (214)
T ss_pred eeeecccccccHHHHHHHH
Confidence 7899999999999876433
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=122.52 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=83.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|+.|+|||||+++|+...-. .. ....+.+.....+.+ .+....+.||||||+..|.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~-------------~~~t~~~~~~~~~~~----~~~~~~l~i~D~~G~~~~~ 61 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PK-------------YRRTVEEMHRKEYEV----GGVSLTLDILDTSGSYSFP 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--cc-------------CCCchhhheeEEEEE----CCEEEEEEEEECCCchhhh
Confidence 4899999999999999999763211 00 000011111122222 2344688999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhC-CCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFN-IDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~-~~~~~~i 157 (257)
.....++..+|++++|+|+++ +|+.........+...+... ....+++
T Consensus 62 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 141 (198)
T cd04147 62 AMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFV 141 (198)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEE
Confidence 888888999999999999987 56533211111111111111 1124689
Q ss_pred EecccccccccccccccCC
Q psy12244 158 RIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~ 176 (257)
++||++|.|++++++++..
T Consensus 142 ~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 142 ETSAKDNENVLEVFKELLR 160 (198)
T ss_pred EecCCCCCCHHHHHHHHHH
Confidence 9999999999999988874
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=115.12 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=84.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|.+|+|||||+++|+...-. .. ..+.+.+.......+ ++....+.+|||||+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~--~~-------------~~~~~~~~~~~~~~~----~~~~~~~~i~D~~g~~~~~ 62 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV--ED-------------YEPTKADSYRKKVVL----DGEDVQLNILDTAGQEDYA 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cc-------------cCCcchhhEEEEEEE----CCEEEEEEEEECCChhhhh
Confidence 7999999999999999999753211 00 000011111111111 3445789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC--CHHHHHHHHHHHhCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA--NPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~--~~~~~~~~~~~~~~~~~~~~ 156 (257)
......++.+|++++|+|... +|+... ........+.+.++ .++
T Consensus 63 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~---~~~ 139 (164)
T cd04139 63 AIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWG---VPY 139 (164)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC---CeE
Confidence 999999999999999999876 566431 11122223333333 479
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|++++++.+.
T Consensus 140 ~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 140 VETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred EEeeCCCCCCHHHHHHHHH
Confidence 9999999999999998775
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=119.10 Aligned_cols=124 Identities=16% Similarity=0.138 Sum_probs=82.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEe-ceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK-AQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+|+++|++|+|||||+++|++..-. .. .. .|.. .....+.+ ++..+.+.+|||||+.+|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~------------~~--~t~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~ 61 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EE------------YV--PTVFDHYAVSVTV----GGKQYLLGLYDTAGQEDY 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CC------------CC--CceeeeeEEEEEE----CCEEEEEEEEeCCCcccc
Confidence 6999999999999999999753211 00 00 1111 11112222 344577899999999998
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHH--------------HHHHH
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPE--------------ACEEQ 144 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~--------------~~~~~ 144 (257)
.......++.+|++++|+|..+ +|+.+.... +....
T Consensus 62 ~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (174)
T cd04135 62 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQK 141 (174)
T ss_pred cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence 8877788899999999999877 555322100 01111
Q ss_pred HHHHhCCCccceEEecccccccccccccccC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.+. ....+++++||++|.|++++++.+.
T Consensus 142 ~~~~--~~~~~~~e~Sa~~~~gi~~~f~~~~ 170 (174)
T cd04135 142 LAKE--IGAHCYVECSALTQKGLKTVFDEAI 170 (174)
T ss_pred HHHH--cCCCEEEEecCCcCCCHHHHHHHHH
Confidence 2222 2234689999999999999988765
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=129.40 Aligned_cols=129 Identities=15% Similarity=0.172 Sum_probs=87.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+..|+|+|.+|||||||+++|+.....+. ..+..|+.+....+.+.. ...+.+|||||+.+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va--------------~ypfTT~~p~~G~v~~~~-----~~~~~i~D~PGli~ 218 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIA--------------DYPFTTLHPNLGVVRVDD-----YKSFVIADIPGLIE 218 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccC--------------CCCCceeCceEEEEEeCC-----CcEEEEEeCCCccC
Confidence 34689999999999999999975332211 123457777777676632 15799999999743
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCCHHHHHHHHHHH
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNANPEACEEQLQTL 148 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~~~~~~~~~~~~ 148 (257)
+...+...+..+|++++|+|+++ +|+.+... ...+.++..
T Consensus 219 ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~-~~~~~~~~~ 297 (335)
T PRK12299 219 GASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE-EREKRAALE 297 (335)
T ss_pred CCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchh-HHHHHHHHH
Confidence 44556677888999999999985 56543221 111122222
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.....+++++||++++|+++++++|..
T Consensus 298 ~~~~~~~i~~iSAktg~GI~eL~~~L~~ 325 (335)
T PRK12299 298 LAALGGPVFLISAVTGEGLDELLRALWE 325 (335)
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 2112356999999999999999988863
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=121.97 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=83.9
Q ss_pred EecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHHHHH
Q psy12244 34 IAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVT 113 (257)
Q Consensus 34 vG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 113 (257)
+|..++|||||+++++.. .. .. +...|+........+.. ++....+.||||||+++|...+.
T Consensus 1 vG~~~vGKTsLi~r~~~~--~f------------~~--~~~~Tig~~~~~~~~~~--~~~~~~l~iwDt~G~e~~~~l~~ 62 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--EF------------EK--KYVATLGVEVHPLVFHT--NRGPIRFNVWDTAGQEKFGGLRD 62 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--CC------------CC--CCCCceeEEEEEEEEEE--CCEEEEEEEEECCCchhhhhhhH
Confidence 699999999999999642 11 11 11233332222222322 44568999999999999999999
Q ss_pred HhhhhcceEEEEEecCc-----------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEeccccc
Q psy12244 114 RSLAACQGVVLLIDANQ-----------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRC 164 (257)
Q Consensus 114 ~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g 164 (257)
.+++.+|++|+|+|+++ +|+...........+.+. ...+++++||++|
T Consensus 63 ~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~---~~~~~~e~SAk~~ 139 (200)
T smart00176 63 GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRK---KNLQYYDISAKSN 139 (200)
T ss_pred HHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHH---cCCEEEEEeCCCC
Confidence 99999999999999998 665332111111122222 2356999999999
Q ss_pred ccccccccccCC
Q psy12244 165 FSCADCHRSLDS 176 (257)
Q Consensus 165 ~gi~~l~~~i~~ 176 (257)
.||+++|++|..
T Consensus 140 ~~v~~~F~~l~~ 151 (200)
T smart00176 140 YNFEKPFLWLAR 151 (200)
T ss_pred CCHHHHHHHHHH
Confidence 999999998874
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=122.04 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=78.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+++|++|+|||||+++|++..... ....+.|.+.....+.+.. ...+.||||||+.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~--------------~~~~~~t~~~~~~~~~~~~-----~~~~~i~Dt~G~~ 100 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYA--------------EDQLFATLDPTTRRLRLPD-----GREVLLTDTVGFI 100 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhcc--------------CCccceeccceeEEEEecC-----CceEEEeCCCccc
Confidence 35689999999999999999997643111 0112334444444444432 1378999999984
Q ss_pred cc-H-------HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHH
Q psy12244 107 DF-S-------NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTL 148 (257)
Q Consensus 107 ~~-~-------~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~ 148 (257)
+. . ......+..+|++++|+|++. +|+..... .. ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~---~~---~~ 174 (204)
T cd01878 101 RDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE---LE---ER 174 (204)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH---HH---HH
Confidence 31 1 112234567999999999986 33322111 11 11
Q ss_pred hCCCccceEEecccccccccccccccC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.....+++++||++|.|+++++++|.
T Consensus 175 ~~~~~~~~~~~Sa~~~~gi~~l~~~L~ 201 (204)
T cd01878 175 LEAGRPDAVFISAKTGEGLDELLEAIE 201 (204)
T ss_pred hhcCCCceEEEEcCCCCCHHHHHHHHH
Confidence 222345799999999999999988765
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=118.67 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=82.1
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN 110 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 110 (257)
|+++|.+|+|||||+++|+...- .. +......... ...+.+ ++....+.+|||||++.|..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~------------~~~~~~~~~~-~~~~~~----~~~~~~~~i~Dt~G~~~~~~ 61 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PE------------DYVPTVFENY-SADVEV----DGKPVELGLWDTAGQEDYDR 61 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CC------------CCCCcEEeee-eEEEEE----CCEEEEEEEEECCCCcccch
Confidence 58999999999999999975321 10 0011111111 111222 34557899999999999988
Q ss_pred HHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHHHHHHH
Q psy12244 111 EVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EACEEQLQ 146 (257)
Q Consensus 111 ~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~~~~~~ 146 (257)
.....+..+|++|+|+|.++ +|+..... .+..+++.
T Consensus 62 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 141 (174)
T smart00174 62 LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALA 141 (174)
T ss_pred hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHH
Confidence 88888899999999999987 45432100 00111233
Q ss_pred HHhCCCccceEEecccccccccccccccCC
Q psy12244 147 TLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 147 ~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.++ ..+++++||++|.|++++++.+..
T Consensus 142 ~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 142 KRIG--AVKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred HHcC--CcEEEEecCCCCCCHHHHHHHHHH
Confidence 3323 236899999999999999987764
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=136.09 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=85.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+|+|++....+.. ...+.|.+.....+.+.+ ..+.+|||||+.+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-------------~~~gtT~d~~~~~i~~~g------~~i~l~DT~G~~~ 275 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVT-------------DIAGTTRDVIEEHINLDG------IPLRLIDTAGIRE 275 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccC-------------CCCCcccccEEEEEEECC------eEEEEEeCCCCCC
Confidence 357999999999999999999764332211 235667666666666655 6899999999976
Q ss_pred cHH--------HHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 108 FSN--------EVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~--------~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
+.. .....+..+|++++|+|++. +|+..... .. .....+
T Consensus 276 ~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~------~~---~~~~~~ 346 (449)
T PRK05291 276 TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEID------LE---EENGKP 346 (449)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccch------hh---hccCCc
Confidence 432 23446788999999999975 23221100 00 112346
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|+++|+++|..
T Consensus 347 ~i~iSAktg~GI~~L~~~L~~ 367 (449)
T PRK05291 347 VIRISAKTGEGIDELREAIKE 367 (449)
T ss_pred eEEEEeeCCCCHHHHHHHHHH
Confidence 899999999999999998874
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-15 Score=115.55 Aligned_cols=126 Identities=12% Similarity=0.131 Sum_probs=83.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|+.|+|||||+++|.+.... .. .+. +.........+ .+....+.+|||||+..+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~-------------~~~-~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~~ 61 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--EN-------------VPR-VLPEITIPADV----TPERVPTTIVDTSSRPQDR 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cc-------------CCC-cccceEeeeee----cCCeEEEEEEeCCCchhhh
Confidence 6899999999999999999763211 00 000 00000111111 2344789999999999888
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH----HHHHHHHHHHhCCCccc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP----EACEEQLQTLFNIDKKS 155 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~----~~~~~~~~~~~~~~~~~ 155 (257)
..+...+..+|++++|+|+++ +|+.+... ++....+...+.. ..+
T Consensus 62 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~ 140 (166)
T cd01893 62 ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE-IET 140 (166)
T ss_pred HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc-ccE
Confidence 877888899999999999887 66643321 1112222222221 136
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|++++++.+.+
T Consensus 141 ~~e~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 141 CVECSAKTLINVSEVFYYAQK 161 (166)
T ss_pred EEEeccccccCHHHHHHHHHH
Confidence 899999999999999987764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=125.17 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=84.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceE-eceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITV-KAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+|+++|..|+|||||+++|+...- .. +...|+ +.....+.+ ++..+.+.||||+|+++|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f--~~--------------~y~pTi~d~~~k~~~i----~~~~~~l~I~Dt~G~~~~ 61 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF--EE--------------QYTPTIEDFHRKLYSI----RGEVYQLDILDTSGNHPF 61 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC--CC--------------CCCCChhHhEEEEEEE----CCEEEEEEEEECCCChhh
Confidence 699999999999999999975221 10 001111 111222222 345578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc---------------------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ---------------------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~---------------------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
......++..+|++|+|+|.++ +|+... .+...+++.+.+
T Consensus 62 ~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~-~~v~~~ei~~~~ 140 (247)
T cd04143 62 PAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP-REVQRDEVEQLV 140 (247)
T ss_pred hHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc-cccCHHHHHHHH
Confidence 8877778889999999999876 222110 011223344443
Q ss_pred C-CCccceEEecccccccccccccccCC
Q psy12244 150 N-IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 ~-~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+ ....+++++||++|.|++++++.|..
T Consensus 141 ~~~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 141 GGDENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred HhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3 22456999999999999999998874
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-16 Score=117.14 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=72.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc---
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV--- 106 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~--- 106 (257)
+|+++|++|+|||||+++|++... ....|. .+.+ .-.+|||||+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~------------------~~~~t~-----~~~~---------~~~~iDt~G~~~~~ 49 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI------------------LYKKTQ-----AVEY---------NDGAIDTPGEYVEN 49 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc------------------ccccce-----eEEE---------cCeeecCchhhhhh
Confidence 699999999999999999964211 001111 1222 12589999983
Q ss_pred -ccHHHHHHhhhhcceEEEEEecCc-----------------------cCCCCCC-HHHHHHHHHHHhCCCccceEEecc
Q psy12244 107 -DFSNEVTRSLAACQGVVLLIDANQ-----------------------VDLKNAN-PEACEEQLQTLFNIDKKSVLRIWH 161 (257)
Q Consensus 107 -~~~~~~~~~~~~aD~~ilVvd~~~-----------------------~D~~~~~-~~~~~~~~~~~~~~~~~~~i~iSa 161 (257)
.+...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+..+ ..+++++||
T Consensus 50 ~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa 127 (142)
T TIGR02528 50 RRLYSALIVTAADADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEADVDIERAKELLETAG--AEPIFEISS 127 (142)
T ss_pred HHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcccCHHHHHHHHHHcC--CCcEEEEec
Confidence 233333446789999999999987 6764321 1111122222222 236899999
Q ss_pred cccccccccccccC
Q psy12244 162 RRCFSCADCHRSLD 175 (257)
Q Consensus 162 ~~g~gi~~l~~~i~ 175 (257)
++|.|++++++++.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999988764
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=119.20 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=91.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|..|+|||||+++|.. +... ....|.......+.+.+ +.+.+||.+|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~---------------~~~pT~g~~~~~i~~~~------~~~~~~d~gG~ 68 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEIS---------------ETIPTIGFNIEEIKYKG------YSLTIWDLGGQ 68 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEE---------------EEEEESSEEEEEEEETT------EEEEEEEESSS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--cccc---------------ccCcccccccceeeeCc------EEEEEEecccc
Confidence 6778999999999999999999953 1110 12234444455566655 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHH-HHhC-C
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQ-TLFN-I 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~-~~~~-~ 151 (257)
..+...+..++..+|++|+|+|+.+ .|+.++- .++..+.+. ..+. .
T Consensus 69 ~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~ 148 (175)
T PF00025_consen 69 ESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNK 148 (175)
T ss_dssp GGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSS
T ss_pred ccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccC
Confidence 9999999999999999999999997 5655432 222222221 1111 2
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
....++++||++|+|+.+.+++|.
T Consensus 149 ~~~~v~~~sa~~g~Gv~e~l~WL~ 172 (175)
T PF00025_consen 149 RPWSVFSCSAKTGEGVDEGLEWLI 172 (175)
T ss_dssp SCEEEEEEBTTTTBTHHHHHHHHH
T ss_pred CceEEEeeeccCCcCHHHHHHHHH
Confidence 234589999999999999888775
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=117.46 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=82.2
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|++..-.. +..+. ..+.....+.. .+....+.+|||||+++|.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~--------------~~~~~-~~~~~~~~~~~----~~~~~~l~~~D~~g~~~~~ 62 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPT--------------EYVPT-VFDNYSATVTV----DGKQVNLGLWDTAGQEEYD 62 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCc-eeeeeEEEEEE----CCEEEEEEEEeCCCccccc
Confidence 68999999999999999997633200 00000 11111111222 3445789999999999887
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHH----------HHHHHHHHh
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEA----------CEEQLQTLF 149 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~----------~~~~~~~~~ 149 (257)
......++.+|++++|+|+++ +|+.+..... ..++..+..
T Consensus 63 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~ 142 (171)
T cd00157 63 RLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLA 142 (171)
T ss_pred ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHH
Confidence 777777789999999999987 5543322110 011112211
Q ss_pred -CCCccceEEecccccccccccccccC
Q psy12244 150 -NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 -~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.....+++++||++|.|++++++.|.
T Consensus 143 ~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 143 KEIGAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred HHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence 22233799999999999999988765
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-15 Score=130.30 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=81.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+++|++|+|||||+|+|++.. .+. ....+.|.++....+.+.+ ...+.||||||+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v-------------~~~~~tT~d~~~~~i~~~~-----~~~i~l~DT~G~~ 248 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYA-------------ADQLFATLDPTTRRLDLPD-----GGEVLLTDTVGFI 248 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eee-------------ccCCccccCCEEEEEEeCC-----CceEEEEecCccc
Confidence 44789999999999999999997643 111 1123456666666666532 1578999999982
Q ss_pred c---------cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHH
Q psy12244 107 D---------FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQT 147 (257)
Q Consensus 107 ~---------~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~ 147 (257)
+ |. .+...+..||++++|+|+++ +|+... .. +..
T Consensus 249 ~~l~~~lie~f~-~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~----v~~ 321 (351)
T TIGR03156 249 RDLPHELVAAFR-ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PR----IER 321 (351)
T ss_pred ccCCHHHHHHHH-HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--Hh----HHH
Confidence 2 22 23345788999999999985 333211 11 111
Q ss_pred HhCCCccceEEecccccccccccccccC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
... ...+++++||++|.|+++|++.|.
T Consensus 322 ~~~-~~~~~i~iSAktg~GI~eL~~~I~ 348 (351)
T TIGR03156 322 LEE-GYPEAVFVSAKTGEGLDLLLEAIA 348 (351)
T ss_pred HHh-CCCCEEEEEccCCCCHHHHHHHHH
Confidence 111 113589999999999999988775
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-16 Score=136.58 Aligned_cols=125 Identities=41% Similarity=0.699 Sum_probs=112.1
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
..|.++.+||.|.-|.++|||||.+++++..+.+... .....+|....|+++|+|+......+.|.. +.+
T Consensus 33 ~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~------~~i 106 (721)
T KOG0465|consen 33 RIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD------YRI 106 (721)
T ss_pred cCchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc------cee
Confidence 3455689999999999999999999999988877655 446789999999999999999999999986 999
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
++||||||.+|..+..++++..|++++|+|+.. ||.-++++-..++++...++.
T Consensus 107 NiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~ 186 (721)
T KOG0465|consen 107 NIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNH 186 (721)
T ss_pred EEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCC
Confidence 999999999999999999999999999999987 888888889999999888764
Q ss_pred C
Q psy12244 152 D 152 (257)
Q Consensus 152 ~ 152 (257)
.
T Consensus 187 ~ 187 (721)
T KOG0465|consen 187 K 187 (721)
T ss_pred c
Confidence 3
|
|
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-15 Score=117.57 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=87.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+++|+...-.. .+..+.+........+.+ ++....+.+||++|.+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~-------------~~~~~T~~~~~~~~~~~~----~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSL-------------NAYSPTIKPRYAVNTVEV----YGQEKYLILREVGEDE 65 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCc-------------ccCCCccCcceEEEEEEE----CCeEEEEEEEecCCcc
Confidence 56789999999999999999996522110 011111111111122333 3344678999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCCH--HHHHHHHHHHhCCCccce
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNANP--EACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~--~~~~~~~~~~~~~~~~~~ 156 (257)
.+......+++.+|++++|+|+++ +|+.+... ....+++++.++.. ++
T Consensus 66 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~ 143 (169)
T cd01892 66 VAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP--PP 143 (169)
T ss_pred cccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCC--CC
Confidence 988777888899999999999977 45432210 11123444444432 36
Q ss_pred EEecccccccccccccccCCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+++||++|.|++++++.+...
T Consensus 144 ~~~Sa~~~~~v~~lf~~l~~~ 164 (169)
T cd01892 144 LHFSSKLGDSSNELFTKLATA 164 (169)
T ss_pred EEEEeccCccHHHHHHHHHHH
Confidence 899999999999999887643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-15 Score=116.44 Aligned_cols=139 Identities=19% Similarity=0.211 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccE
Q psy12244 16 KATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEY 95 (257)
Q Consensus 16 ~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~ 95 (257)
++..++++|....+.|+++|++|+|||||+|+|++..... +.+..+|.|..+++..+. .
T Consensus 12 sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA------------rtSktPGrTq~iNff~~~--~------- 70 (200)
T COG0218 12 SAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLA------------RTSKTPGRTQLINFFEVD--D------- 70 (200)
T ss_pred ecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCccee------------ecCCCCCccceeEEEEec--C-------
Confidence 4556778898999999999999999999999998755322 234567888876554432 2
Q ss_pred EEEEeCCCCCcc----------cHHHHHHhh---hhcceEEEEEecCc--------------------------cCCCCC
Q psy12244 96 LLNLIDTPGHVD----------FSNEVTRSL---AACQGVVLLIDANQ--------------------------VDLKNA 136 (257)
Q Consensus 96 ~~~liDtpG~~~----------~~~~~~~~~---~~aD~~ilVvd~~~--------------------------~D~~~~ 136 (257)
.+.|+|.||+.- ....+..++ ....++++++|+.. +|+...
T Consensus 71 ~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 71 ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK 150 (200)
T ss_pred cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh
Confidence 378999999743 223333344 23677999999998 777553
Q ss_pred C-HHHHHHHHHHHhCCCcc-c--eEEecccccccccccccccC
Q psy12244 137 N-PEACEEQLQTLFNIDKK-S--VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 137 ~-~~~~~~~~~~~~~~~~~-~--~i~iSa~~g~gi~~l~~~i~ 175 (257)
. ..+.+..+++.+..... . ++..|+.++.|++++.+.|.
T Consensus 151 ~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~ 193 (200)
T COG0218 151 SERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKIL 193 (200)
T ss_pred hHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHH
Confidence 2 44555666655533221 1 78889999999999988776
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-15 Score=120.32 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=79.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+.++|+++|++|+|||||+|+|++... .....++.|.... .+.+ ..+.+|||||+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~--------------~~~~~~~~t~~~~--~~~~--------~~~~l~Dt~G~ 62 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV--------------RVGKRPGVTRKPN--HYDW--------GDFILTDLPGF 62 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC--------------ccCCCCceeeCce--EEee--------cceEEEeCCcc
Confidence 3457899999999999999999965221 1112345554422 2222 25889999994
Q ss_pred -----------cccHHHHHHh----hhhcceEEEEEecCc-------------------------------------cCC
Q psy12244 106 -----------VDFSNEVTRS----LAACQGVVLLIDANQ-------------------------------------VDL 133 (257)
Q Consensus 106 -----------~~~~~~~~~~----~~~aD~~ilVvd~~~-------------------------------------~D~ 133 (257)
+.|...+..+ +..+|++++|+|+.. +|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl 142 (201)
T PRK04213 63 GFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDK 142 (201)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccc
Confidence 3344433333 345689999999842 444
Q ss_pred CCCCHHHHHHHHHHHhCCC------ccceEEecccccccccccccccCC
Q psy12244 134 KNANPEACEEQLQTLFNID------KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~------~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.... .+..+++.+.++.. ..+++++||++| |+++++++|..
T Consensus 143 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~ 189 (201)
T PRK04213 143 IKNR-DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRK 189 (201)
T ss_pred cCcH-HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHH
Confidence 3222 22344555555541 125899999999 99999998873
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-15 Score=129.49 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=86.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
..|+++|.+|||||||+++|+.....+. ..+..|..+....+.+.. ...+.|+||||+..
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa--------------~ypfTTl~PnlG~v~~~~-----~~~~~laD~PGlieg 219 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIA--------------NYHFTTLVPNLGVVETDD-----GRSFVMADIPGLIEG 219 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccc--------------cCCcceeceEEEEEEEeC-----CceEEEEECCCCccc
Confidence 4799999999999999999976432221 123456666666666641 16799999999743
Q ss_pred ------cHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCCHHHHHHHHH
Q psy12244 108 ------FSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNANPEACEEQLQ 146 (257)
Q Consensus 108 ------~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~~~~~~~~~~ 146 (257)
+.......+..+|++++|+|++. +|+.. ..+..+.+.
T Consensus 220 a~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~--~~e~l~~l~ 297 (424)
T PRK12297 220 ASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE--AEENLEEFK 297 (424)
T ss_pred ccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC--CHHHHHHHH
Confidence 33445666778999999999952 55422 122334444
Q ss_pred HHhCCCccceEEecccccccccccccccC
Q psy12244 147 TLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 147 ~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.++ .+++++||++|+|+++|+++|.
T Consensus 298 ~~l~---~~i~~iSA~tgeGI~eL~~~L~ 323 (424)
T PRK12297 298 EKLG---PKVFPISALTGQGLDELLYAVA 323 (424)
T ss_pred HHhC---CcEEEEeCCCCCCHHHHHHHHH
Confidence 4444 4699999999999999988876
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-15 Score=115.02 Aligned_cols=124 Identities=17% Similarity=0.255 Sum_probs=82.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+.... ... ....+.+.....+.+ .+..+.+.+||+||+.++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~-------------~~~~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~ 61 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEE-------------YDPTIEDSYRKTIVV----DGETYTLDILDTAGQEEFS 61 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcC-------------cCCChhHeEEEEEEE----CCEEEEEEEEECCChHHHH
Confidence 589999999999999999975331 110 000011111112222 2334789999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
......++.+|++++|+|.++ +|+.... ..+...++...++ .++
T Consensus 62 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~ 138 (160)
T cd00876 62 AMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG---CPF 138 (160)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC---CcE
Confidence 888889999999999999876 5543311 1111122222222 579
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|+++++++|.
T Consensus 139 ~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 139 IETSAKDNINIDEVFKLLV 157 (160)
T ss_pred EEeccCCCCCHHHHHHHHH
Confidence 9999999999999988775
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-15 Score=139.95 Aligned_cols=126 Identities=18% Similarity=0.268 Sum_probs=92.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+|+|++.... .....|.|.+.....+.+.+ +.+.+|||||+.+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--------------vgn~pGvTve~k~g~~~~~~------~~i~lvDtPG~ys 62 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR--------------VGNWAGVTVERKEGQFSTTD------HQVTLVDLPGTYS 62 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc--------------cCCCCCceEeeEEEEEEcCc------eEEEEEECCCccc
Confidence 357999999999999999999653221 12246788877777776655 7899999999987
Q ss_pred cHHH----------HHHhh--hhcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhC
Q psy12244 108 FSNE----------VTRSL--AACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFN 150 (257)
Q Consensus 108 ~~~~----------~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~ 150 (257)
+... ....+ ..+|++++|+|+++ +|+.+. ......+++++.++
T Consensus 63 l~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG 142 (772)
T PRK09554 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG 142 (772)
T ss_pred cccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC
Confidence 6421 11122 36899999999997 676432 33444556666665
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+|++++||++|+|++++++.+..
T Consensus 143 ---~pVvpiSA~~g~GIdeL~~~I~~ 165 (772)
T PRK09554 143 ---CPVIPLVSTRGRGIEALKLAIDR 165 (772)
T ss_pred ---CCEEEEEeecCCCHHHHHHHHHH
Confidence 46999999999999999988864
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.2e-15 Score=115.32 Aligned_cols=126 Identities=19% Similarity=0.278 Sum_probs=84.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+++|++|+|||||+++|+..... .. ..+. +.......+.+ .+..+.+.+|||||+.+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~------------~~~t-~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~ 62 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ES------------YYPT-IENTFSKIIRY----KGQDYHLEIVDTAGQDEY 62 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cc------------cCcc-hhhhEEEEEEE----CCEEEEEEEEECCChHhh
Confidence 57999999999999999999753211 00 0000 00001111222 233467899999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
......++..+|++++|+|.++ +|+...+ .....+.+.+.++ .+
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~---~~ 139 (180)
T cd04137 63 SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG---AA 139 (180)
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC---Ce
Confidence 8888888999999999999886 4543211 1111223333333 56
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|++++++++..
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 140 FLESSARENENVEEAFELLIE 160 (180)
T ss_pred EEEEeCCCCCCHHHHHHHHHH
Confidence 899999999999999988874
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=110.77 Aligned_cols=126 Identities=23% Similarity=0.358 Sum_probs=80.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+++|+... .. .+..++++.+.....+.+ ++..+.+.+|||||+.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~-------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~G~~~~ 63 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FI-------------TEYKPGTTRNYVTTVIEE----DGKTYKFNLLDTAGQEDY 63 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-Cc-------------CcCCCCceeeeeEEEEEE----CCEEEEEEEEECCCcccc
Confidence 579999999999999999997643 11 122344555544433433 233467899999999998
Q ss_pred HHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCCHHHHHHHHHHHh-CCCccc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNANPEACEEQLQTLF-NIDKKS 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~~~~~~~~~~~~~-~~~~~~ 155 (257)
...+......++.++.++|... +|+...+ ...+....+ .....+
T Consensus 64 ~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~ 140 (161)
T TIGR00231 64 RAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK---LKTHVAFLFAKLNGEP 140 (161)
T ss_pred hHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch---hhHHHHHHHhhccCCc
Confidence 7666666666666665555543 3433222 122222212 122346
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|+++++++|.
T Consensus 141 ~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 141 IIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred eEEeecCCCCCHHHHHHHhh
Confidence 99999999999999988764
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-15 Score=118.08 Aligned_cols=131 Identities=17% Similarity=0.217 Sum_probs=95.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|.+++|||-|+.++.. +.+..+....+.+.+.+..+.. +++..+.+||||+|+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftr--------------nEF~~~SksTIGvef~t~t~~v----d~k~vkaqIWDTAGQ 73 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTR--------------NEFSLESKSTIGVEFATRTVNV----DGKTVKAQIWDTAGQ 73 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcc--------------cccCcccccceeEEEEeeceee----cCcEEEEeeecccch
Confidence 4678899999999999999999943 3344444555555555544444 667789999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
++|...+..+++.|-++++|+|.+. +|+...+ ....++.+.+.......
T Consensus 74 ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lr-aV~te~~k~~Ae~~~l~ 152 (222)
T KOG0087|consen 74 ERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLR-AVPTEDGKAFAEKEGLF 152 (222)
T ss_pred hhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhcc-ccchhhhHhHHHhcCce
Confidence 9999999999999999999999987 5553311 11112222222223345
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||..+.|+++.|+.+.
T Consensus 153 f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 153 FLETSALDATNVEKAFERVL 172 (222)
T ss_pred EEEecccccccHHHHHHHHH
Confidence 89999999999998886654
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-15 Score=139.41 Aligned_cols=131 Identities=17% Similarity=0.226 Sum_probs=91.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+++|++|+|||||+|+|++....+.. ...|.|.+.....+.+.+ ..+.||||||+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-------------~~~gtT~d~~~~~~~~~~------~~~~liDTaG~~ 509 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN-------------DLAGTTRDPVDEIVEIDG------EDWLFIDTAGIK 509 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccC-------------CCCCCCcCcceeEEEECC------CEEEEEECCCcc
Confidence 4578999999999999999999765432211 245667666555566655 568899999974
Q ss_pred c---------cHHH--HHHhhhhcceEEEEEecCc--------------------------cCCCCCC-HHHHHHHHHHH
Q psy12244 107 D---------FSNE--VTRSLAACQGVVLLIDANQ--------------------------VDLKNAN-PEACEEQLQTL 148 (257)
Q Consensus 107 ~---------~~~~--~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~~~~~~~ 148 (257)
+ +... ...+++.+|++++|+|++. +|+.+.. .+...+.+...
T Consensus 510 ~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~ 589 (712)
T PRK09518 510 RRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTE 589 (712)
T ss_pred cCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHh
Confidence 2 2111 2345688999999999987 6765432 23333344443
Q ss_pred h-CCCccceEEecccccccccccccccCC
Q psy12244 149 F-NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~-~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+ .....+++++||++|.|++++++.+..
T Consensus 590 l~~~~~~~ii~iSAktg~gv~~L~~~i~~ 618 (712)
T PRK09518 590 FDRVTWARRVNLSAKTGWHTNRLAPAMQE 618 (712)
T ss_pred ccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3 334567899999999999999988763
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-15 Score=117.72 Aligned_cols=125 Identities=13% Similarity=0.096 Sum_probs=81.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|+.|+|||||+.+++... ... +..+ ...+.....+.. ++....+.+|||||+..|.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~--~~~------------~~~~-t~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~~~ 62 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG--YPT------------EYVP-TAFDNFSVVVLV----DGKPVRLQLCDTAGQDEFD 62 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC------------CCCC-ceeeeeeEEEEE----CCEEEEEEEEECCCChhhc
Confidence 68999999999999999986521 100 0011 111111111222 3445788999999999988
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--------------HHHHHHHH
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--------------PEACEEQL 145 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--------------~~~~~~~~ 145 (257)
..+...++.+|++|+|+|.++ +|+.... ..+....+
T Consensus 63 ~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (173)
T cd04130 63 KLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred cccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHH
Confidence 887788899999999999987 4442210 00011122
Q ss_pred HHHhCCCccceEEecccccccccccccccC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+.++ ..+++++||++|.|++++++.+.
T Consensus 143 a~~~~--~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 143 AEKIG--ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHhC--CCeEEEEeCCCCCCHHHHHHHHH
Confidence 22222 23699999999999999987654
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=118.50 Aligned_cols=127 Identities=16% Similarity=0.162 Sum_probs=86.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceee-EEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA-SLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|..++|||||+.+|+... +..+.. .|+...+. .+.+ ++....+.||||+|++.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--------------f~~~y~--pTi~~~~~~~~~~----~~~~v~L~iwDt~G~e~ 61 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--------------YPGSYV--PTVFENYTASFEI----DKRRIELNMWDTSGSSY 61 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--------------CCCccC--CccccceEEEEEE----CCEEEEEEEEeCCCcHH
Confidence 479999999999999999996521 111111 12211111 1222 45568899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--H------------HHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--P------------EACEE 143 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~------------~~~~~ 143 (257)
|......+++.+|++|+|+|.++ +|+.... . .+..+
T Consensus 62 ~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 62 YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHH
Confidence 99888889999999999999998 6664311 0 01112
Q ss_pred HHHHHhCCCccceEEeccccccc-ccccccccCCC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFS-CADCHRSLDST 177 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~g-i~~l~~~i~~~ 177 (257)
.+.+.++ ..+++++||+++.| |+++|+.....
T Consensus 142 ~~ak~~~--~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 142 VLAKQVG--AVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHHHcC--CCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 2222222 34799999999985 99999877643
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=127.39 Aligned_cols=128 Identities=17% Similarity=0.232 Sum_probs=87.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
..|+|+|.+|||||||+|+|+..... ....++.|..+....+.+.. ...+.|+||||+..
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~--------------vs~~p~TT~~p~~Giv~~~~-----~~~i~~vDtPGi~~~ 220 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPK--------------VADYPFTTLVPNLGVVRVDD-----ERSFVVADIPGLIEG 220 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCccc--------------ccCCCCCccCcEEEEEEeCC-----CcEEEEEeCCCcccc
Confidence 36999999999999999999754321 12234566666666666543 13589999999854
Q ss_pred ------cHHHHHHhhhhcceEEEEEecC---c--------------------------------cCCCCCC-HHHHHHHH
Q psy12244 108 ------FSNEVTRSLAACQGVVLLIDAN---Q--------------------------------VDLKNAN-PEACEEQL 145 (257)
Q Consensus 108 ------~~~~~~~~~~~aD~~ilVvd~~---~--------------------------------~D~~~~~-~~~~~~~~ 145 (257)
+...+...+..+|++++|+|+. . +|+.... ..+..+++
T Consensus 221 a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l 300 (390)
T PRK12298 221 ASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAI 300 (390)
T ss_pred ccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHH
Confidence 3345566788999999999987 1 5553211 11222233
Q ss_pred HHHhCCCccceEEecccccccccccccccCC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+.++. ..+++++||+++.|+++|++.|..
T Consensus 301 ~~~~~~-~~~Vi~ISA~tg~GIdeLl~~I~~ 330 (390)
T PRK12298 301 VEALGW-EGPVYLISAASGLGVKELCWDLMT 330 (390)
T ss_pred HHHhCC-CCCEEEEECCCCcCHHHHHHHHHH
Confidence 333222 135899999999999999887763
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=114.23 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=81.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
++|+++|+.++|||||+++|++..-. . . ...|.... ...+.+ ++....+.+|||||+++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~------------~--~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--E------------V--YVPTVFENYVADIEV----DGKQVELALWDTAGQED 61 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--C------------C--CCCccccceEEEEEE----CCEEEEEEEEeCCCchh
Confidence 57999999999999999999753211 0 0 00111111 112222 34457889999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--H------------HHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--E------------ACEE 143 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--~------------~~~~ 143 (257)
|.......+..+|++++|+|.++ +|+.+... . ...+
T Consensus 62 ~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~ 141 (175)
T cd01870 62 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGR 141 (175)
T ss_pred hhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHH
Confidence 88777778899999999999885 34322110 0 0011
Q ss_pred HHHHHhCCCccceEEecccccccccccccccC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++... ....+++++||++|.|+++++++|.
T Consensus 142 ~~~~~--~~~~~~~~~Sa~~~~~v~~lf~~l~ 171 (175)
T cd01870 142 DMANK--IGAFGYMECSAKTKEGVREVFEMAT 171 (175)
T ss_pred HHHHH--cCCcEEEEeccccCcCHHHHHHHHH
Confidence 11111 1233689999999999999998775
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=111.16 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=86.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..++|||||+++|....- . .+..+.+..+.....+.. ++..+.+.+||++|+++|.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~--~------------~~~~~t~~~~~~~~~~~~----~~~~~~l~i~D~~g~~~~~ 62 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF--P------------ENYIPTIGIDSYSKEVSI----DGKPVNLEIWDTSGQERFD 62 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST--T------------SSSETTSSEEEEEEEEEE----TTEEEEEEEEEETTSGGGH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc--c------------cccccccccccccccccc----ccccccccccccccccccc
Confidence 589999999999999999976321 1 111111212222233333 4566889999999999998
Q ss_pred HHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
......++.+|++|+|+|.++ .|+.+.. ..+..+++.+.++ .+++
T Consensus 63 ~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~---~~~~ 139 (162)
T PF00071_consen 63 SLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG---VPYF 139 (162)
T ss_dssp HHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT---SEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC---CEEE
Confidence 888888999999999999998 4543311 1112233333333 6799
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||+++.|+.+++..+.
T Consensus 140 e~Sa~~~~~v~~~f~~~i 157 (162)
T PF00071_consen 140 EVSAKNGENVKEIFQELI 157 (162)
T ss_dssp EEBTTTTTTHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999887654
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=123.98 Aligned_cols=126 Identities=16% Similarity=0.215 Sum_probs=84.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+..|+++|.+|+|||||+++|......+. ..+..|..+....+.+.. ...+.|+||||+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va--------------~y~fTT~~p~ig~v~~~~-----~~~~~i~D~PGli~ 217 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIA--------------DYPFTTLVPNLGVVRVDD-----GRSFVIADIPGLIE 217 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCcccc--------------CCCCCccCCEEEEEEeCC-----ceEEEEEeCCCccc
Confidence 35789999999999999999975332211 112345555555555432 25789999999853
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCC-HHHHHHH
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNAN-PEACEEQ 144 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~-~~~~~~~ 144 (257)
+...+...+..+|++++|+|++. +|+.... .++..++
T Consensus 218 ~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~ 297 (329)
T TIGR02729 218 GASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKE 297 (329)
T ss_pred CCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHH
Confidence 34455667778999999999983 5553321 2222233
Q ss_pred HHHHhCCCccceEEecccccccccccccccC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.+.++ .+++++||++++|+++++++|.
T Consensus 298 l~~~~~---~~vi~iSAktg~GI~eL~~~I~ 325 (329)
T TIGR02729 298 LKKALG---KPVFPISALTGEGLDELLYALA 325 (329)
T ss_pred HHHHcC---CcEEEEEccCCcCHHHHHHHHH
Confidence 333222 4699999999999999988775
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-15 Score=111.30 Aligned_cols=128 Identities=19% Similarity=0.232 Sum_probs=88.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
-.++.++|.+-+|||+|+..+.. |... +-.++.+.++.-...++.. .+...++.+|||+|+++
T Consensus 8 qfrlivigdstvgkssll~~ft~--gkfa------------elsdptvgvdffarlie~~---pg~riklqlwdtagqer 70 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTE--GKFA------------ELSDPTVGVDFFARLIELR---PGYRIKLQLWDTAGQER 70 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhc--Cccc------------ccCCCccchHHHHHHHhcC---CCcEEEEEEeeccchHH
Confidence 35788999999999999999854 2211 1112223333222222222 45568999999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
|...+.++++++=++++|+|.++ .|+...+ -.+..+.+++.+|+
T Consensus 71 frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-- 148 (213)
T KOG0091|consen 71 FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-- 148 (213)
T ss_pred HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc--
Confidence 99999999999999999999998 5554322 11222334444454
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.++++||++|.||++.+..|.
T Consensus 149 -~FVETSak~g~NVeEAF~mla 169 (213)
T KOG0091|consen 149 -AFVETSAKNGCNVEEAFDMLA 169 (213)
T ss_pred -eEEEecccCCCcHHHHHHHHH
Confidence 499999999999998776664
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.1e-15 Score=113.70 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=78.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-c
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-F 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-~ 108 (257)
+|+++|++|+|||||+++++...- .. .+ .+.. .......+.+ ++....+.+|||||+.. +
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~--------~~----~~t~-~~~~~~~~~~----~~~~~~~~i~D~~g~~~~~ 61 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IG--------EY----DPNL-ESLYSRQVTI----DGEQVSLEILDTAGQQQAD 61 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--cc--------cc----CCCh-HHhceEEEEE----CCEEEEEEEEECCCCcccc
Confidence 489999999999999999975211 00 00 0000 0000111222 33446789999999985 3
Q ss_pred HHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
.......++.+|++|+|+|+++ +|+.... ..+....+.+.++ .
T Consensus 62 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~---~ 138 (165)
T cd04146 62 TEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG---C 138 (165)
T ss_pred cchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC---C
Confidence 4556778899999999999987 4432111 0111222333333 4
Q ss_pred ceEEeccccc-ccccccccccC
Q psy12244 155 SVLRIWHRRC-FSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g-~gi~~l~~~i~ 175 (257)
+++++||++| .|++++|+.+.
T Consensus 139 ~~~e~Sa~~~~~~v~~~f~~l~ 160 (165)
T cd04146 139 LFFEVSAAEDYDGVHSVFHELC 160 (165)
T ss_pred EEEEeCCCCCchhHHHHHHHHH
Confidence 6999999999 59999988775
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=115.52 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=86.2
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.....+|+++|+.|+|||||+++++... ... ....|+........+.. ++....+.+|||||
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~--~~~~i~i~~~Dt~g 67 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGE--FEK--------------KYIPTLGVEVHPLKFYT--NCGPICFNVWDTAG 67 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCC--CCC--------------CCCCccceEEEEEEEEE--CCeEEEEEEEECCC
Confidence 3445789999999999999998875421 110 11123332233333322 44558999999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCH-HHHHHHHHHHhCCCcc
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANP-EACEEQLQTLFNIDKK 154 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~-~~~~~~~~~~~~~~~~ 154 (257)
+.+|...+...+..+|++++|+|.++ +|+.+... .+.. ++.+. ...
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~-~~~~~---~~~ 143 (215)
T PTZ00132 68 QEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQI-TFHRK---KNL 143 (215)
T ss_pred chhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHH-HHHHH---cCC
Confidence 99998887778889999999999974 44432111 1111 22222 234
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.++++||++|.|+++++.+|.+
T Consensus 144 ~~~e~Sa~~~~~v~~~f~~ia~ 165 (215)
T PTZ00132 144 QYYDISAKSNYNFEKPFLWLAR 165 (215)
T ss_pred EEEEEeCCCCCCHHHHHHHHHH
Confidence 6899999999999998877763
|
|
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-16 Score=126.39 Aligned_cols=188 Identities=20% Similarity=0.238 Sum_probs=128.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEe-ecc----------------
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRY-TSI---------------- 89 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~---------------- 89 (257)
-..||+.+||+.+||||++.++.+- ..-+|+.|-++.+|+..+++.... +..
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv-----------~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~ 105 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGV-----------HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSS 105 (466)
T ss_pred eeeeecceeccccCcceeeeeeccc-----------eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCC
Confidence 3568999999999999999998431 234677888899999988876432 110
Q ss_pred ------c-----CC---ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------
Q psy12244 90 ------L-----DG---EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------- 130 (257)
Q Consensus 90 ------~-----~~---~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------- 130 (257)
| .+ --.++.|+|+|||.-++..|++++...|+++|++.+++
T Consensus 106 k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhiiil 185 (466)
T KOG0466|consen 106 KEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIIL 185 (466)
T ss_pred CCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEE
Confidence 0 00 02478899999999999999999999999999999998
Q ss_pred ---cCCCCCC-HHHHHHHHHHHh---CCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCc-------
Q psy12244 131 ---VDLKNAN-PEACEEQLQTLF---NIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDI------- 196 (257)
Q Consensus 131 ---~D~~~~~-~~~~~~~~~~~~---~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~------- 196 (257)
+|+..+. ..+..++++++. ....+|++|+||.-+.|++.+.++|.+ .+|.|.++...+..+
T Consensus 186 QNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivk-----kIPvPvRdf~s~prlIVIRSFD 260 (466)
T KOG0466|consen 186 QNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVK-----KIPVPVRDFTSPPRLIVIRSFD 260 (466)
T ss_pred echhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHh-----cCCCCccccCCCCcEEEEEeec
Confidence 6664332 345555667665 345679999999999999999999983 233333322221111
Q ss_pred ------chhhhcceeeEeeecccchhhHHHHHHhhCCccc
Q psy12244 197 ------PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS 230 (257)
Q Consensus 197 ------~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~ 230 (257)
.+++..+-+..|.+-.|-..+++.|-..+|.+.+
T Consensus 261 VNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~k 300 (466)
T KOG0466|consen 261 VNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTK 300 (466)
T ss_pred cCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeee
Confidence 1233344445555556655566666555665443
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=128.28 Aligned_cols=126 Identities=15% Similarity=0.117 Sum_probs=81.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..+.|+++|.+|+|||||+|+|++..... ....+.|.+.....+.+.+ ...+.||||||+.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v--------------~~~~~tTld~~~~~i~l~~-----~~~~~l~DTaG~~ 256 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYA--------------ADQLFATLDPTLRRIDVAD-----VGETVLADTVGFI 256 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceee--------------ccCCCCCcCCceEEEEeCC-----CCeEEEEecCccc
Confidence 34679999999999999999997532211 1133456666555555543 1367899999984
Q ss_pred cc--------HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHH
Q psy12244 107 DF--------SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTL 148 (257)
Q Consensus 107 ~~--------~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~ 148 (257)
+. ...+...+..||++++|+|+++ +|+.... ....+. . .
T Consensus 257 r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~-~~~~~~-~-~ 333 (426)
T PRK11058 257 RHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF-EPRIDR-D-E 333 (426)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch-hHHHHH-H-h
Confidence 32 1223455688999999999986 4443211 000100 0 1
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+. ..++++||++|.|+++|++.|..
T Consensus 334 ~~~--~~~v~ISAktG~GIdeL~e~I~~ 359 (426)
T PRK11058 334 ENK--PIRVWLSAQTGAGIPLLFQALTE 359 (426)
T ss_pred cCC--CceEEEeCCCCCCHHHHHHHHHH
Confidence 111 12588999999999999988873
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-14 Score=110.06 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=80.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+|+|++........ ....+.......+.. ....+.+|||||+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~------~~~~~~liDtpG~~~ 63 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-------------KPQTTRNRIRGIYTD------DDAQIIFVDTPGIHK 63 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccC-------------CCCceeceEEEEEEc------CCeEEEEEECCCCCc
Confidence 4679999999999999999997643221111 111111111111111 226788999999865
Q ss_pred cH--------HHHHHhhhhcceEEEEEecCc--------------------------cCCCCC--CHHHHHHHHHHHhCC
Q psy12244 108 FS--------NEVTRSLAACQGVVLLIDANQ--------------------------VDLKNA--NPEACEEQLQTLFNI 151 (257)
Q Consensus 108 ~~--------~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~--~~~~~~~~~~~~~~~ 151 (257)
.. ......+..+|++++|+|+.. +|+... ...+..+.++.. .
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~ 141 (168)
T cd04163 64 PKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKEL--G 141 (168)
T ss_pred chHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhc--c
Confidence 32 233456788999999999986 555321 122222233332 2
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++|++++.|++++++.|.
T Consensus 142 ~~~~~~~~s~~~~~~~~~l~~~l~ 165 (168)
T cd04163 142 PFAEIFPISALKGENVDELLEEIV 165 (168)
T ss_pred CCCceEEEEeccCCChHHHHHHHH
Confidence 235789999999999999988775
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-14 Score=106.26 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=93.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|.|+|..|+||||++++|.+..... -..|..++.....+++ +.+++||..|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~-----------------i~pt~gf~Iktl~~~~------~~L~iwDvGGq 70 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDT-----------------ISPTLGFQIKTLEYKG------YTLNIWDVGGQ 70 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccc-----------------cCCccceeeEEEEecc------eEEEEEEcCCc
Confidence 456789999999999999999996543211 1235566666677777 99999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHH--HHHHHHhCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACE--EQLQTLFNI 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~--~~~~~~~~~ 151 (257)
..+...|.+++..+|++|+|+|+.+ .|+.++- .+.+. -.+.+.+..
T Consensus 71 ~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks 150 (185)
T KOG0073|consen 71 KTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKS 150 (185)
T ss_pred chhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccc
Confidence 9999999999999999999999987 4444221 12222 123333344
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++-+||.+|+++.+=+++|.
T Consensus 151 ~~~~l~~cs~~tge~l~~gidWL~ 174 (185)
T KOG0073|consen 151 HHWRLVKCSAVTGEDLLEGIDWLC 174 (185)
T ss_pred cCceEEEEeccccccHHHHHHHHH
Confidence 556789999999988766555554
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=128.16 Aligned_cols=126 Identities=13% Similarity=0.210 Sum_probs=84.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
...|+|+|.+|+|||||+|+|+.....+ ...++.|+.+....+.+.. ..|.|+||||+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkI--------------adypfTTl~P~lGvv~~~~------~~f~laDtPGlie 218 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKI--------------ADYPFTTLVPNLGVVQAGD------TRFTVADVPGLIP 218 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccc--------------cccCcccccceEEEEEECC------eEEEEEECCCCcc
Confidence 3579999999999999999997533221 1234567777777777655 7899999999743
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc---------------------------------------------cCCCC
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ---------------------------------------------VDLKN 135 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~---------------------------------------------~D~~~ 135 (257)
........+..+|++|+|||++. +|+.+
T Consensus 219 gas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 219 GASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred ccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence 22344566788999999999963 11110
Q ss_pred CCHHHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 136 ANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.....+.+...+.....++|++||++++|+++|+++|.
T Consensus 299 --a~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ 336 (500)
T PRK12296 299 --ARELAEFVRPELEARGWPVFEVSAASREGLRELSFALA 336 (500)
T ss_pred --hHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 11111222222211134799999999999999988775
|
|
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-14 Score=115.97 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=78.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceE--eceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITV--KAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~--~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+|+++|.+|+|||||+++|+...-.. . ....+. +.....+.+ ++....+.||||||++.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~-~--------------~~~~t~~~~~~~~~i~~----~~~~~~l~i~Dt~G~~~ 62 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDD-H--------------AYDASGDDDTYERTVSV----DGEESTLVVIDHWEQEM 62 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCc-c--------------CcCCCccccceEEEEEE----CCEEEEEEEEeCCCcch
Confidence 69999999999999999996421100 0 000111 111222322 33447899999999983
Q ss_pred cHHHHHHhhh-hcceEEEEEecCc-------------------------------cCCCCCCH--HHHHHHHHHHhCCCc
Q psy12244 108 FSNEVTRSLA-ACQGVVLLIDANQ-------------------------------VDLKNANP--EACEEQLQTLFNIDK 153 (257)
Q Consensus 108 ~~~~~~~~~~-~aD~~ilVvd~~~-------------------------------~D~~~~~~--~~~~~~~~~~~~~~~ 153 (257)
+. ....+. .+|++++|+|+++ +|+..... .+..+++...+ .
T Consensus 63 ~~--~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~---~ 137 (221)
T cd04148 63 WT--EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVF---D 137 (221)
T ss_pred HH--HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHc---C
Confidence 32 233455 8999999999987 55533211 11112233322 2
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++++||++|.||+++++.+..
T Consensus 138 ~~~~e~SA~~~~gv~~l~~~l~~ 160 (221)
T cd04148 138 CKFIETSAGLQHNVDELLEGIVR 160 (221)
T ss_pred CeEEEecCCCCCCHHHHHHHHHH
Confidence 46899999999999999998873
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=126.97 Aligned_cols=122 Identities=20% Similarity=0.261 Sum_probs=84.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|++|+|||||+|+|++....+.. ..+|.|.+.....+.+++ ..+.+|||||+.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-------------~~pgtTrd~~~~~i~~~g------~~v~l~DTaG~~ 262 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVS-------------DIKGTTRDVVEGDFELNG------ILIKLLDTAGIR 262 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccC-------------CCCCcEEEEEEEEEEECC------EEEEEeeCCCcc
Confidence 3468999999999999999999864433221 235677777666677765 788999999996
Q ss_pred ccHHH--------HHHhhhhcceEEEEEecCc-------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 107 DFSNE--------VTRSLAACQGVVLLIDANQ-------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~--------~~~~~~~aD~~ilVvd~~~-------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
++... ...+++.+|++++|+|++. +|+...+ .+.+.+.++
T Consensus 263 ~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~~----~~~~~~~~~--- 335 (442)
T TIGR00450 263 EHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKINS----LEFFVSSKV--- 335 (442)
T ss_pred cchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCcc----hhhhhhhcC---
Confidence 64322 3456788999999999875 4443221 112222222
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++ .|++++++.+.
T Consensus 336 ~~~~~vSak~-~gI~~~~~~L~ 356 (442)
T TIGR00450 336 LNSSNLSAKQ-LKIKALVDLLT 356 (442)
T ss_pred CceEEEEEec-CCHHHHHHHHH
Confidence 3588999998 57777766665
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-14 Score=109.34 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=74.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..|+|||||+.+++... .... .. .+.......+.+ ++....+.+|||+|++..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~--f~~~------------~~--~~~~~~~~~i~~----~~~~~~l~i~D~~g~~~~- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS--YVQL------------ES--PEGGRFKKEVLV----DGQSHLLLIRDEGGAPDA- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCCC------------CC--CCccceEEEEEE----CCEEEEEEEEECCCCCch-
Confidence 69999999999999999986521 1000 00 011111112223 344577999999999763
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH----HHHHHHHHHHhCCCcc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP----EACEEQLQTLFNIDKK 154 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~----~~~~~~~~~~~~~~~~ 154 (257)
..++.+|++++|+|.++ +|+...+. .+..+++.+. ...+
T Consensus 61 ----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~--~~~~ 134 (158)
T cd04103 61 ----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCAD--MKRC 134 (158)
T ss_pred ----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH--hCCC
Confidence 34577999999999998 33321110 1111223221 2235
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.||+++|+.+.
T Consensus 135 ~~~e~SAk~~~~i~~~f~~~~ 155 (158)
T cd04103 135 SYYETCATYGLNVERVFQEAA 155 (158)
T ss_pred cEEEEecCCCCCHHHHHHHHH
Confidence 799999999999999988765
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-14 Score=130.92 Aligned_cols=126 Identities=20% Similarity=0.270 Sum_probs=93.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|+||+|||||+|+|++....+. .=+|+|++.....+.+++ +.+.++|+||..+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~Vg--------------NwpGvTVEkkeg~~~~~~------~~i~ivDLPG~YS 62 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVG--------------NWPGVTVEKKEGKLKYKG------HEIEIVDLPGTYS 62 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceec--------------CCCCeeEEEEEEEEEecC------ceEEEEeCCCcCC
Confidence 34599999999999999999977544332 247899999999998887 7899999999765
Q ss_pred cHH------HHHHhh--hhcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhCCCcc
Q psy12244 108 FSN------EVTRSL--AACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~------~~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~~~~~ 154 (257)
+.. -...++ ..+|+++-|+||++ +|..+. ..+--.+.+++.+| +
T Consensus 63 L~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG---v 139 (653)
T COG0370 63 LTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLG---V 139 (653)
T ss_pred CCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhC---C
Confidence 321 122233 35799999999998 343211 11222456677666 5
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
|++++||++|.|++++++.+.+
T Consensus 140 PVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 140 PVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred CEEEEEeecCCCHHHHHHHHHH
Confidence 6999999999999999988864
|
|
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-14 Score=102.30 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=91.6
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
+....+.+-.|+|..|+|||.|+-++..+.-.. ...+.+.+..++..++. .+...++.+|||
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfma--------------dcphtigvefgtriiev----sgqkiklqiwdt 67 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--------------DCPHTIGVEFGTRIIEV----SGQKIKLQIWDT 67 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhh--------------cCCcccceecceeEEEe----cCcEEEEEEeec
Confidence 344567888999999999999999997643221 11223334444444444 456689999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCC
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
+|+++|...+.++++.+-++++|+|.+. .|+... .+...++.+++..-.
T Consensus 68 agqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q-rdv~yeeak~faeen 146 (215)
T KOG0097|consen 68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ-RDVTYEEAKEFAEEN 146 (215)
T ss_pred ccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc-ccCcHHHHHHHHhhc
Confidence 9999999999999999999999999987 343221 122233444443333
Q ss_pred ccceEEecccccccccccc
Q psy12244 153 KKSVLRIWHRRCFSCADCH 171 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~ 171 (257)
..-+++.||++|+|+++.|
T Consensus 147 gl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 147 GLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred CeEEEEecccccCcHHHHH
Confidence 4458999999999998754
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-14 Score=110.48 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=53.8
Q ss_pred EEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEee-cccCCccEEEEEeCCCCCcc----
Q psy12244 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYT-SILDGEEYLLNLIDTPGHVD---- 107 (257)
Q Consensus 33 ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~---- 107 (257)
++|++|+|||||+++|.+.... .....+.|.......+.+. + ..+.||||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~------~~~~i~DtpG~~~~~~~ 60 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK--------------VANYPFTTLEPNLGVVEVPDG------ARIQVADIPGLIEGASE 60 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc--------------ccCCCceeecCcceEEEcCCC------CeEEEEeccccchhhhc
Confidence 5899999999999999764211 1112334555555555554 4 6789999999843
Q ss_pred ---cHHHHHHhhhhcceEEEEEecCc
Q psy12244 108 ---FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 108 ---~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+...+...+..+|++++|+|+..
T Consensus 61 ~~~~~~~~~~~~~~~d~ii~v~d~~~ 86 (176)
T cd01881 61 GRGLGNQFLAHIRRADAILHVVDASE 86 (176)
T ss_pred CCCccHHHHHHHhccCEEEEEEeccC
Confidence 23344566788999999999874
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-14 Score=112.95 Aligned_cols=131 Identities=19% Similarity=0.152 Sum_probs=78.7
Q ss_pred eeEEEEecCCCChHHHHH-HHHHhcCccccCCCcccccchHHHhhhCceEec-e-ee-EEE--e--ecccCCccEEEEEe
Q psy12244 29 RNFSIIAHVDHGKSTLAD-RLLEMTGTVLSSGSSQVLDSLQVEQERGITVKA-Q-TA-SLR--Y--TSILDGEEYLLNLI 100 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~-~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~-~-~~-~~~--~--~~~~~~~~~~~~li 100 (257)
.+|+++|..++|||||+. ++.... ... ..+..+ ...|+.. . +. ... . ....++....+.||
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~--~~~-------~~f~~~--~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iw 71 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKT--LTQ-------YQLLAT--HVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLW 71 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC--ccc-------ccCccc--cCCceecccceeEEeeeccccceeeCCEEEEEEEE
Confidence 579999999999999996 443211 000 001111 1122210 0 00 000 0 00114566899999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC--------------
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA-------------- 136 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~-------------- 136 (257)
||+|++++ ....+++.+|++|+|+|.++ +|+.+.
T Consensus 72 DTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~ 149 (195)
T cd01873 72 DTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLAR 149 (195)
T ss_pred eCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccccc
Confidence 99999863 23457889999999999987 565421
Q ss_pred -----C--HHHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 137 -----N--PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 137 -----~--~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
. ..+..+++.+.++ ++++++||++|.||+++|+.+.
T Consensus 150 ~~~~~~~V~~~e~~~~a~~~~---~~~~E~SAkt~~~V~e~F~~~~ 192 (195)
T cd01873 150 PIKNADILPPETGRAVAKELG---IPYYETSVVTQFGVKDVFDNAI 192 (195)
T ss_pred ccccCCccCHHHHHHHHHHhC---CEEEEcCCCCCCCHHHHHHHHH
Confidence 0 1112223333333 4799999999999999988765
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.6e-14 Score=102.62 Aligned_cols=128 Identities=14% Similarity=0.242 Sum_probs=93.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-+.++.|+|...+||||++-+.+... +...--+.+.++.....+ |. ..+..++++|||+|++
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddS--------------Ft~afvsTvGidFKvKTv-yr---~~kRiklQiwDTagqE 81 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDS--------------FTSAFVSTVGIDFKVKTV-YR---SDKRIKLQIWDTAGQE 81 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccc--------------cccceeeeeeeeEEEeEe-ee---cccEEEEEEEecccch
Confidence 45689999999999999999885522 111112223333322222 22 2234789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
.|...+-.++++|++.||++|.++ ||+..++ ..+-..++.+.+|+.
T Consensus 82 ryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-- 159 (193)
T KOG0093|consen 82 RYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE-- 159 (193)
T ss_pred hhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChH--
Confidence 999999999999999999999998 6765544 233344566667764
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+|+.|||.+.|+.++|+.+.
T Consensus 160 -fFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 160 -FFETSAKENINVKQVFERLV 179 (193)
T ss_pred -HhhhcccccccHHHHHHHHH
Confidence 89999999999999888765
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.6e-14 Score=126.05 Aligned_cols=103 Identities=45% Similarity=0.710 Sum_probs=91.1
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
..+.+..+|+.++.|+++|||||...|+...+.+... +.-.++|..+.|+.+|+|++........++ +.++|
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~------~~~nl 76 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKD------YLINL 76 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCc------eEEEE
Confidence 4556789999999999999999999999988877665 556789999999999999987666644444 89999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
||+|||.||......+.+-+|+++++||+.+
T Consensus 77 idspghvdf~sevssas~l~d~alvlvdvve 107 (887)
T KOG0467|consen 77 IDSPGHVDFSSEVSSASRLSDGALVLVDVVE 107 (887)
T ss_pred ecCCCccchhhhhhhhhhhcCCcEEEEeecc
Confidence 9999999999999999999999999999998
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-13 Score=103.40 Aligned_cols=139 Identities=20% Similarity=0.194 Sum_probs=96.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|++.|+.++||||++.++.+............ +..+. .+..|+...+....+.+ .+.++|+|||||+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~--~s~k~--kr~tTva~D~g~~~~~~-----~~~v~LfgtPGq~ 79 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS--VSGKG--KRPTTVAMDFGSIELDE-----DTGVHLFGTPGQE 79 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccc--ccccc--ccceeEeecccceEEcC-----cceEEEecCCCcH
Confidence 456899999999999999999987664333221100 01111 33355555555555433 2689999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCCHHHHHHHHHHHhCC--CccceE
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNANPEACEEQLQTLFNI--DKKSVL 157 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~~~~~~~~~~~~~~~--~~~~~i 157 (257)
+|..++....+.++++|+++|++. .|+..+...+. +++.+.. ...|+|
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~---i~e~l~~~~~~~~vi 156 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEK---IREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHH---HHHHHHhccCCCcee
Confidence 999999999999999999999998 45544443222 2333322 256899
Q ss_pred EecccccccccccccccCCC
Q psy12244 158 RIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~ 177 (257)
+++|..++++.+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999998877766643
|
|
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-14 Score=105.81 Aligned_cols=132 Identities=15% Similarity=0.174 Sum_probs=89.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+..|+|.+++|||+|+-++... .+....-..+.++.....+.. .+...++.||||+|++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~dd--------------tFs~sYitTiGvDfkirTv~i----~G~~VkLqIwDtAGqE 68 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADD--------------TFSGSYITTIGVDFKIRTVDI----NGDRVKLQIWDTAGQE 68 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhc--------------ccccceEEEeeeeEEEEEeec----CCcEEEEEEeecccHH
Confidence 3456789999999999999998542 122111222233333333333 4566899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
.|...+..+++..+++++|+|.+. .|.++... ...++.+.+...-.+.+|
T Consensus 69 rFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv-V~t~dAr~~A~~mgie~F 147 (198)
T KOG0079|consen 69 RFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRV-VDTEDARAFALQMGIELF 147 (198)
T ss_pred HHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcccee-eehHHHHHHHHhcCchhe
Confidence 999999999999999999999998 22222111 111223333222235689
Q ss_pred EecccccccccccccccCCC
Q psy12244 158 RIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~ 177 (257)
++||+...|++..|.-|.++
T Consensus 148 ETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 148 ETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ehhhhhcccchHHHHHHHHH
Confidence 99999999999988777643
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-14 Score=130.96 Aligned_cols=119 Identities=21% Similarity=0.234 Sum_probs=84.5
Q ss_pred ecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHHH---
Q psy12244 35 AHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNE--- 111 (257)
Q Consensus 35 G~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--- 111 (257)
|++|+|||||+|+|++... .....+|.|.+.....+.+++ ..+.+|||||+.++...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~--------------~v~n~pG~Tv~~~~~~i~~~~------~~i~lvDtPG~~~~~~~s~~ 60 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ--------------TVGNWPGVTVEKKEGKLGFQG------EDIEIVDLPGIYSLTTFSLE 60 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC--------------eecCCCCeEEEEEEEEEEECC------eEEEEEECCCccccCccchH
Confidence 8999999999999965321 112356788887777777765 67899999999886432
Q ss_pred ---HHHhh--hhcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHHHHhCCCccceEEecc
Q psy12244 112 ---VTRSL--AACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQTLFNIDKKSVLRIWH 161 (257)
Q Consensus 112 ---~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~~i~iSa 161 (257)
....+ ..+|++++|+|+++ +|+.+.. .....+++.+.++ .|++++||
T Consensus 61 e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg---~pvv~tSA 137 (591)
T TIGR00437 61 EEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLG---VPVVPTSA 137 (591)
T ss_pred HHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcC---CCEEEEEC
Confidence 22222 46899999999987 4542211 1222345555554 57999999
Q ss_pred cccccccccccccCC
Q psy12244 162 RRCFSCADCHRSLDS 176 (257)
Q Consensus 162 ~~g~gi~~l~~~i~~ 176 (257)
++|+|++++++.+.+
T Consensus 138 ~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 138 TEGRGIERLKDAIRK 152 (591)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999998874
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=104.21 Aligned_cols=125 Identities=20% Similarity=0.225 Sum_probs=82.3
Q ss_pred EEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHHHH
Q psy12244 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEV 112 (257)
Q Consensus 33 ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 112 (257)
++|++|+|||||+++|+...... .....|. .......... ......+.+||+||+..+....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~---------------~~~~~t~-~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~ 62 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP---------------EEYETTI-IDFYSKTIEV--DGKKVKLQIWDTAGQERFRSLR 62 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC---------------cccccch-hheeeEEEEE--CCEEEEEEEEecCChHHHHhHH
Confidence 58999999999999997643310 0111122 2222233321 2234789999999999988888
Q ss_pred HHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEecc
Q psy12244 113 TRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWH 161 (257)
Q Consensus 113 ~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSa 161 (257)
...++.+|++++|+|+.. +|+.....................+++++|+
T Consensus 63 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 142 (157)
T cd00882 63 RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSA 142 (157)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEec
Confidence 888899999999999998 4553332222111011222233467999999
Q ss_pred cccccccccccccC
Q psy12244 162 RRCFSCADCHRSLD 175 (257)
Q Consensus 162 ~~g~gi~~l~~~i~ 175 (257)
+++.|+++++++|.
T Consensus 143 ~~~~~i~~~~~~l~ 156 (157)
T cd00882 143 KTGENVEELFEELA 156 (157)
T ss_pred CCCCChHHHHHHHh
Confidence 99999999887764
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.4e-14 Score=106.12 Aligned_cols=125 Identities=21% Similarity=0.222 Sum_probs=80.3
Q ss_pred EEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH---
Q psy12244 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS--- 109 (257)
Q Consensus 33 ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~--- 109 (257)
++|++|+|||||+++|++...... ....+.|.........+. ....+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dt~g~~~~~~~~ 62 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV-------------SPVPGTTTDPVEYVWELG-----PLGPVVLIDTPGIDEAGGLG 62 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc-------------CCCCCcEECCeEEEEEec-----CCCcEEEEECCCCCccccch
Confidence 589999999999999976432211 112233433333333322 12689999999987754
Q ss_pred ----HHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHH-HHH-HHHHHhCCCccceE
Q psy12244 110 ----NEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEA-CEE-QLQTLFNIDKKSVL 157 (257)
Q Consensus 110 ----~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~-~~~-~~~~~~~~~~~~~i 157 (257)
..+...++.+|++++|+|+.. +|+...+... ..+ ...........+++
T Consensus 63 ~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
T cd00880 63 REREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVI 142 (163)
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceE
Confidence 344457788999999999998 5654332111 111 11112234456899
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||+++.|++++++++.
T Consensus 143 ~~sa~~~~~v~~l~~~l~ 160 (163)
T cd00880 143 AVSALTGEGIDELREALI 160 (163)
T ss_pred EEeeeccCCHHHHHHHHH
Confidence 999999999999888765
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.2e-15 Score=109.64 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=89.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..+|+++|...+|||||+-+++...-. + ++-.|+...+......- ++....+.||||+|++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn----------~------kHlsTlQASF~~kk~n~--ed~ra~L~IWDTAGQE 73 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFN----------C------KHLSTLQASFQNKKVNV--EDCRADLHIWDTAGQE 73 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcc----------h------hhHHHHHHHHhhccccc--ccceeeeeeeeccchH
Confidence 3578999999999999999998753211 1 11111111111111111 3345789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
+|-..-.-+++.+|+++||+|.++ +|+.+.+ ....++...+.....+.+
T Consensus 74 rfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR-~Vt~qeAe~YAesvGA~y 152 (218)
T KOG0088|consen 74 RFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEER-QVTRQEAEAYAESVGALY 152 (218)
T ss_pred hhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhh-hhhHHHHHHHHHhhchhh
Confidence 999888889999999999999998 6664432 222223333333334568
Q ss_pred EEecccccccccccccccCCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+++||+...||.++|+.|...
T Consensus 153 ~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 153 METSAKDNVGISELFESLTAK 173 (218)
T ss_pred eecccccccCHHHHHHHHHHH
Confidence 999999999999999888643
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=110.98 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=58.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc--
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-- 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-- 107 (257)
+|+++|.+|+|||||+++|.+..... ....+.|.+.....+.+.+ ..+++|||||+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v--------------~~~~~tT~~~~~g~~~~~~------~~i~l~DtpG~~~~~ 61 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV--------------AAYEFTTLTCVPGVLEYKG------AKIQLLDLPGIIEGA 61 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc--------------cCCCCccccceEEEEEECC------eEEEEEECCCccccc
Confidence 58999999999999999997532211 1122345455555566655 7899999999854
Q ss_pred -----cHHHHHHhhhhcceEEEEEecCc
Q psy12244 108 -----FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 108 -----~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+.......++.+|++++|+|+++
T Consensus 62 ~~~~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 62 ADGKGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred ccchhHHHHHHHhhccCCEEEEEecCCc
Confidence 23455677899999999999865
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-13 Score=109.90 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=81.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+|+++|+.|+|||||+++|.... ... +.. .|.... ...+.+ ++....+.+|||||+..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~--~~~------------~~~--~t~~~~~~~~~~~----~~~~~~l~i~Dt~g~~~ 61 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGE--FPE------------EYH--PTVFENYVTDCRV----DGKPVQLALWDTAGQEE 61 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCc------------ccC--CcccceEEEEEEE----CCEEEEEEEEECCCChh
Confidence 479999999999999999996321 100 001 111111 112222 33446789999999988
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH------------HHHHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP------------EACEEQL 145 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~------------~~~~~~~ 145 (257)
|.......++.+|++++|+|.+. +|+..... ......+
T Consensus 62 ~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (187)
T cd04129 62 YERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRV 141 (187)
T ss_pred ccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHH
Confidence 76555556788999999999987 55532110 0112222
Q ss_pred HHHhCCCccceEEecccccccccccccccCC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+.++ ..++|++||++|.|++++++.+.+
T Consensus 142 ~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~ 170 (187)
T cd04129 142 AKEIG--AKKYMECSALTGEGVDDVFEAATR 170 (187)
T ss_pred HHHhC--CcEEEEccCCCCCCHHHHHHHHHH
Confidence 33323 246999999999999999998874
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-13 Score=119.94 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=70.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
....|+|+|+||+|||||+|+|......+..+ ..|.|.|.-.+.+..++ +.+.|+||+|..
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-------------v~GTTRDaiea~v~~~G------~~v~L~DTAGiR 327 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-------------VPGTTRDAIEAQVTVNG------VPVRLSDTAGIR 327 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-------------CCCcchhhheeEeecCC------eEEEEEeccccc
Confidence 34789999999999999999999887777665 78999999888898888 899999999986
Q ss_pred c---------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 107 D---------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~---------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
. -.......+..||++++|+|+..
T Consensus 328 e~~~~~iE~~gI~rA~k~~~~advi~~vvda~~ 360 (531)
T KOG1191|consen 328 EESNDGIEALGIERARKRIERADVILLVVDAEE 360 (531)
T ss_pred cccCChhHHHhHHHHHHHHhhcCEEEEEecccc
Confidence 5 12223446778999999999955
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-13 Score=96.71 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=56.2
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc--
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-- 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-- 107 (257)
+|+++|.+|+|||||+|+|++....... ...+.|.......+.+.. ..+.|+||||..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-------------~~~~~T~~~~~~~~~~~~------~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS-------------NIPGTTRDPVYGQFEYNN------KKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES-------------SSTTSSSSEEEEEEEETT------EEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc-------------ccccceeeeeeeeeeece------eeEEEEeCCCCcccc
Confidence 4899999999999999999863322211 123344444344445544 6778999999854
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
........+..+|++++|+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~ 91 (116)
T PF01926_consen 62 SQDNDGKEIRKFLEQISKSDLIIYVVDASN 91 (116)
T ss_dssp HHHHHHHHHHHHHHHHCTESEEEEEEETTS
T ss_pred hhhHHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence 22234555678999999999774
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-14 Score=120.23 Aligned_cols=184 Identities=16% Similarity=0.192 Sum_probs=120.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeec---------------cc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTS---------------IL 90 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~---------------~~ 90 (257)
..+++++|..++|||||++.|.+ +.+++. .....+.++.+|.+.|.|.......+.|+. ++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQ--geLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQ--GELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEEecCcccCcceeeeeeec--ccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 35799999999999999999954 555544 444556677888888877654444333322 12
Q ss_pred CCccEEEEEeCCCCCcccHHHHHHhhhh--cceEEEEEecCc--------------------------cCCCCCC-HHHH
Q psy12244 91 DGEEYLLNLIDTPGHVDFSNEVTRSLAA--CQGVVLLIDANQ--------------------------VDLKNAN-PEAC 141 (257)
Q Consensus 91 ~~~~~~~~liDtpG~~~~~~~~~~~~~~--aD~~ilVvd~~~--------------------------~D~~~~~-~~~~ 141 (257)
+.....++|||.+||.+|.+.++.++.. .|++++|+.|+. +|+.... .++.
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~t 324 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKT 324 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHH
Confidence 3446789999999999999999988864 799999999987 6775432 3444
Q ss_pred HHHHHHHh--------------------------CCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCC
Q psy12244 142 EEQLQTLF--------------------------NIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYED 195 (257)
Q Consensus 142 ~~~~~~~~--------------------------~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 195 (257)
.+++...+ .-+..|+|.+|+.+|+|++.|..+|.-++..-.-.........+..
T Consensus 325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~~e~~~L~q~~~e 404 (591)
T KOG1143|consen 325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTAEERIQLVQLPAE 404 (591)
T ss_pred HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCChHHHHHHhcCcce
Confidence 44444333 1223489999999999999988887744321110001111222234
Q ss_pred cchhhhcceeeEeeeccc
Q psy12244 196 IPIARIRNFSIIAHVDHG 213 (257)
Q Consensus 196 ~~~~~~~~~~~~G~v~~G 213 (257)
+.+++..++.=+|.|.-|
T Consensus 405 FqvdEiy~Vp~VG~VVGG 422 (591)
T KOG1143|consen 405 FQVDEIYNVPHVGQVVGG 422 (591)
T ss_pred eeHhHeecCCcccccccc
Confidence 556666666555555545
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-13 Score=111.03 Aligned_cols=85 Identities=19% Similarity=0.300 Sum_probs=65.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+.--.|+++|.+++|||||+++|++........ .-.|..+....+.|++ .+++++|+||.
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y--------------~FTTl~~VPG~l~Y~g------a~IQild~Pgi 120 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADY--------------PFTTLEPVPGMLEYKG------AQIQLLDLPGI 120 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCcccccc--------------CceecccccceEeecC------ceEEEEcCccc
Confidence 345679999999999999999997755544322 1235566677788888 89999999997
Q ss_pred cc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.. .-++.+..++.||++++|+|+..
T Consensus 121 i~gas~g~grG~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 121 IEGASSGRGRGRQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred ccCcccCCCCcceeeeeeccCCEEEEEEecCC
Confidence 44 22456778899999999999996
|
|
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=116.14 Aligned_cols=104 Identities=42% Similarity=0.708 Sum_probs=88.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC---CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS---GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~---~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
.+.+||+++||-.+|||+|+..|..++..-... ..-.+.|.+..|++||.++......+...+. .++.+.++++||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~-~~KS~l~nilDT 204 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS-KGKSYLMNILDT 204 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC-cCceeeeeeecC
Confidence 578999999999999999999998766532211 2235678899999999999988887766653 667789999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|||.+|..++..+++.+|++++|+|+.+
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~E 232 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAE 232 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEccc
Confidence 9999999999999999999999999998
|
|
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-12 Score=107.44 Aligned_cols=126 Identities=18% Similarity=0.330 Sum_probs=90.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+..|++||-||+|||||+++|......+... .-.|+.+....+.|.+. .++++-|.||...
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~Y--------------aFTTL~P~iG~v~yddf-----~q~tVADiPGiI~ 256 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHY--------------AFTTLRPHIGTVNYDDF-----SQITVADIPGIIE 256 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCccccc--------------ceeeeccccceeecccc-----ceeEeccCccccc
Confidence 3468899999999999999997755544332 12456666666767652 3499999999754
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCCHHHHHHHH
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNANPEACEEQL 145 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~~~~~~~~~ 145 (257)
+-...+..+..++..++|+|.+. +|++++ .+..++++
T Consensus 257 GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea-e~~~l~~L 335 (366)
T KOG1489|consen 257 GAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA-EKNLLSSL 335 (366)
T ss_pred cccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH-HHHHHHHH
Confidence 34456778888999999999997 555422 22234566
Q ss_pred HHHhCCCccceEEecccccccccccccccC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++.+..+ .+||+||++|+|+++|++.|.
T Consensus 336 ~~~lq~~--~V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 336 AKRLQNP--HVVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred HHHcCCC--cEEEeeeccccchHHHHHHHh
Confidence 6655432 489999999999999887765
|
|
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-13 Score=98.99 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=84.1
Q ss_pred EEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHHHH
Q psy12244 33 IIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEV 112 (257)
Q Consensus 33 ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 112 (257)
++|.+++|||.|+-++ +.++.-.. ..-.|+.+.+...-..- ++...++++|||+|+++|...+
T Consensus 2 llgds~~gktcllir~--kdgafl~~-------------~fistvgid~rnkli~~--~~~kvklqiwdtagqerfrsvt 64 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRF--KDGAFLAG-------------NFISTVGIDFRNKLIDM--DDKKVKLQIWDTAGQERFRSVT 64 (192)
T ss_pred ccccCccCceEEEEEe--ccCceecC-------------ceeeeeeeccccceecc--CCcEEEEEEeeccchHHHhhhh
Confidence 6899999999998776 33332111 00112222222222222 5667899999999999999999
Q ss_pred HHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccceEEec
Q psy12244 113 TRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVLRIW 160 (257)
Q Consensus 113 ~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i~iS 160 (257)
-.+++.+|+.++++|..+ +|+..++ ..+--+.+.+.++ +|+.++|
T Consensus 65 ~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~---ipfmets 141 (192)
T KOG0083|consen 65 HAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG---IPFMETS 141 (192)
T ss_pred HhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHC---CCceecc
Confidence 999999999999999887 5653322 2222344555555 4699999
Q ss_pred ccccccccccccccC
Q psy12244 161 HRRCFSCADCHRSLD 175 (257)
Q Consensus 161 a~~g~gi~~l~~~i~ 175 (257)
|++|-|++..|-.|.
T Consensus 142 aktg~nvd~af~~ia 156 (192)
T KOG0083|consen 142 AKTGFNVDLAFLAIA 156 (192)
T ss_pred ccccccHhHHHHHHH
Confidence 999999997776655
|
|
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-13 Score=101.29 Aligned_cols=86 Identities=14% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
.+...+..+|+++|--++||||++.+| +.+.+. ..-.|+..+...+.|+. ..+++||
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykL--k~~E~v---------------ttvPTiGfnVE~v~ykn------~~f~vWD 67 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKL--KLGEIV---------------TTVPTIGFNVETVEYKN------ISFTVWD 67 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEee--ccCCcc---------------cCCCccccceeEEEEcc------eEEEEEe
Confidence 344567778999999999999999988 333321 22457777888888877 8999999
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..|+.+++..+..+++..+++|+|||+++
T Consensus 68 vGGq~k~R~lW~~Y~~~t~~lIfVvDS~D 96 (181)
T KOG0070|consen 68 VGGQEKLRPLWKHYFQNTQGLIFVVDSSD 96 (181)
T ss_pred cCCCcccccchhhhccCCcEEEEEEeCCc
Confidence 99999999999999999999999999997
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=110.33 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=85.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
...+.|+++|.+|+|||||+|+|++......+ +---|.++.+..+.+.+ ...+.+-||-|+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d--------------~LFATLdpttR~~~l~~-----g~~vlLtDTVGF 250 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVAD--------------QLFATLDPTTRRIELGD-----GRKVLLTDTVGF 250 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccc--------------cccccccCceeEEEeCC-----CceEEEecCccC
Confidence 45678999999999999999999753322111 11235666666666652 268999999998
Q ss_pred cc--------cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHH
Q psy12244 106 VD--------FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQT 147 (257)
Q Consensus 106 ~~--------~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~ 147 (257)
.+ -.+.++.....||+++.|||+++ +|+... ......+..
T Consensus 251 I~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~--~~~~~~~~~ 328 (411)
T COG2262 251 IRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED--EEILAELER 328 (411)
T ss_pred cccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc--hhhhhhhhh
Confidence 65 12334445577999999999998 343221 111222222
Q ss_pred HhCCCccceEEecccccccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. . + +.+++||++|.|++.|++.|..
T Consensus 329 ~--~-~-~~v~iSA~~~~gl~~L~~~i~~ 353 (411)
T COG2262 329 G--S-P-NPVFISAKTGEGLDLLRERIIE 353 (411)
T ss_pred c--C-C-CeEEEEeccCcCHHHHHHHHHH
Confidence 1 1 1 4799999999999999988763
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-12 Score=101.25 Aligned_cols=102 Identities=25% Similarity=0.335 Sum_probs=69.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+++|++|+|||||+|+|++........ ...+.|.........+.+ ..+++|||||..+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~------------~~~~~T~~~~~~~~~~~~------~~i~viDTPG~~d~ 62 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL------------SASSVTKTCQKESAVWDG------RRVNVIDTPGLFDT 62 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc------------CCCCcccccceeeEEECC------eEEEEEECcCCCCc
Confidence 479999999999999999998754332110 123556666666666655 78999999998764
Q ss_pred H-------HHHHH----hhhhcceEEEEEecCccCCCCCCHHHHHHHHHHHhCC
Q psy12244 109 S-------NEVTR----SLAACQGVVLLIDANQVDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 109 ~-------~~~~~----~~~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~ 151 (257)
. ..+.. ....+|++|+|+++.. . ........+.+++.+|-
T Consensus 63 ~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~--~-t~~d~~~l~~l~~~fg~ 113 (196)
T cd01852 63 SVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR--F-TEEEEQAVETLQELFGE 113 (196)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC--c-CHHHHHHHHHHHHHhCh
Confidence 1 12222 2356799999998875 2 22345667777777763
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-12 Score=97.34 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=74.1
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc--
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF-- 108 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-- 108 (257)
|+++|++|+|||||++.|++...... .+...+.|... ..+... ..+.+|||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~------------~~~~~~~t~~~--~~~~~~-------~~~~~~D~~g~~~~~~ 60 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLAR------------TSKTPGKTQLI--NFFNVN-------DKFRLVDLPGYGYAKV 60 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceee------------ecCCCCcceeE--EEEEcc-------CeEEEecCCCcccccc
Confidence 79999999999999999974221110 01112222221 111111 27889999997542
Q ss_pred --------HHHHHHhh---hhcceEEEEEecCc--------------------------cCCCCCC-HHHHHHHHHHHhC
Q psy12244 109 --------SNEVTRSL---AACQGVVLLIDANQ--------------------------VDLKNAN-PEACEEQLQTLFN 150 (257)
Q Consensus 109 --------~~~~~~~~---~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~~~~~~~~~ 150 (257)
...+..++ ...+++++|+|... +|+.... .......+...+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~ 140 (170)
T cd01876 61 SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELK 140 (170)
T ss_pred CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHH
Confidence 22222333 34678889998875 5543211 2223333333332
Q ss_pred --CCccceEEecccccccccccccccC
Q psy12244 151 --IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 151 --~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
....+++++||+++.|+.++++.|.
T Consensus 141 ~~~~~~~~~~~Sa~~~~~~~~l~~~l~ 167 (170)
T cd01876 141 LFEIDPPIILFSSLKGQGIDELRALIE 167 (170)
T ss_pred hccCCCceEEEecCCCCCHHHHHHHHH
Confidence 3445799999999999999988775
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-12 Score=123.03 Aligned_cols=170 Identities=18% Similarity=0.171 Sum_probs=105.8
Q ss_pred ChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccC------------CccEEEEEeCCCCCcc
Q psy12244 40 GKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILD------------GEEYLLNLIDTPGHVD 107 (257)
Q Consensus 40 GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~------------~~~~~~~liDtpG~~~ 107 (257)
+||||+.+|.+... ......|+|+..+.+.+.+...-. -....++|||||||+.
T Consensus 473 ~KTtLLD~iR~t~v--------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~ 538 (1049)
T PRK14845 473 HNTTLLDKIRKTRV--------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA 538 (1049)
T ss_pred ccccHHHHHhCCCc--------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH
Confidence 39999999965432 223467899998888877653100 0011389999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc--------------------------cCCC-CCC--------------HHHHHHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLK-NAN--------------PEACEEQLQ 146 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~-~~~--------------~~~~~~~~~ 146 (257)
|......++..+|++++|+|+++ +|+. .++ .+...+++.
T Consensus 539 F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~ 618 (1049)
T PRK14845 539 FTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELE 618 (1049)
T ss_pred HHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHH
Confidence 99888888999999999999985 7774 222 122222221
Q ss_pred ----H------HhCC------------CccceEEecccccccccccccccCCCcccCCCC-CCCCCCCCCCCcchh----
Q psy12244 147 ----T------LFNI------------DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLA-KPDSKATPYEDIPIA---- 199 (257)
Q Consensus 147 ----~------~~~~------------~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~---- 199 (257)
+ ..|+ ...+++|+||++|+|+++|+++|..++. ..+. ........+....+.
T Consensus 619 ~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~-~~l~~~L~~~~~~~~~g~VlEv~~ 697 (1049)
T PRK14845 619 IKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ-KYLEERLKLNVEGYAKGTILEVKE 697 (1049)
T ss_pred HHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH-HhhhhhhccCCCCceEEEEEEEEE
Confidence 0 0121 2357999999999999999987763321 0010 001111112223332
Q ss_pred -hhcceeeEeeecccchhhHHHHHHh
Q psy12244 200 -RIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 200 -~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
...+.++.|.+.+|....++.++..
T Consensus 698 ~kG~G~vvt~iv~~G~Lk~GD~iv~g 723 (1049)
T PRK14845 698 EKGLGTTIDAIIYDGTLRRGDTIVVG 723 (1049)
T ss_pred ecCceeEEEEEEEcCEEecCCEEEEc
Confidence 2355667777788877777776553
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.1e-12 Score=104.16 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=59.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|+|+|+||||||||++++......+... +-.|-..+.+.+.+.+ ..+++|||||.-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~Y--------------PFTTK~i~vGhfe~~~------~R~QvIDTPGlL 226 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPY--------------PFTTKGIHVGHFERGY------LRIQVIDTPGLL 226 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCC--------------CccccceeEeeeecCC------ceEEEecCCccc
Confidence 57899999999999999999996644433221 1134455566666665 689999999975
Q ss_pred c--------cHHHHHHhhh-hcceEEEEEecCc
Q psy12244 107 D--------FSNEVTRSLA-ACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~--------~~~~~~~~~~-~aD~~ilVvd~~~ 130 (257)
| ...+...+++ ..++++|++|++.
T Consensus 227 DRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se 259 (346)
T COG1084 227 DRPLEERNEIERQAILALRHLAGVILFLFDPSE 259 (346)
T ss_pred CCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcc
Confidence 5 2333444554 4688999999997
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=99.33 Aligned_cols=83 Identities=20% Similarity=0.410 Sum_probs=58.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+++|++++|||||+++|....... ...++......+.... .+....+.+||||||.++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-----------------t~~s~~~~~~~~~~~~--~~~~~~~~l~D~pG~~~~ 61 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-----------------TVTSIEPNVATFILNS--EGKGKKFRLVDVPGHPKL 61 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-----------------ccCcEeecceEEEeec--CCCCceEEEEECCCCHHH
Confidence 469999999999999999996532110 0011111222222211 123467999999999999
Q ss_pred HHHHHHhhhhc-ceEEEEEecCc
Q psy12244 109 SNEVTRSLAAC-QGVVLLIDANQ 130 (257)
Q Consensus 109 ~~~~~~~~~~a-D~~ilVvd~~~ 130 (257)
...+...++.+ +++|+|+|+..
T Consensus 62 ~~~~~~~~~~~~~~vV~VvD~~~ 84 (203)
T cd04105 62 RDKLLETLKNSAKGIVFVVDSAT 84 (203)
T ss_pred HHHHHHHHhccCCEEEEEEECcc
Confidence 98888889998 99999999985
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.7e-12 Score=109.48 Aligned_cols=106 Identities=47% Similarity=0.757 Sum_probs=90.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeec----------ccCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTS----------ILDG 92 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~----------~~~~ 92 (257)
..+++|+.++.|+++|||||...|+.+.+.+... ..+.++|..+.|+++++|+......+.+.- .-++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 4578999999999999999999999988877644 678889999999999999986555443321 1145
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.+++||.|||.+|..+.-.+++..|++++|||+.+
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~ 133 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccC
Confidence 67899999999999999999999999999999999988
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-11 Score=98.37 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=60.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|..|+|||||+++|.+..-. .+...++... +....... ......+.+|||+|+++|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~--------------~~~~~t~~~~--~~~~~~~~--~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP--------------EGYPPTIGNL--DPAKTIEP--YRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc--------------ccCCCceeee--eEEEEEEe--CCCEEEEEeecCCCHHHH
Confidence 78999999999999999999653221 1112222222 11111111 122467999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
...+..+...++++++|+|...
T Consensus 68 ~~~~~~y~~~~~~~l~~~d~~~ 89 (219)
T COG1100 68 RSLRPEYYRGANGILIVYDSTL 89 (219)
T ss_pred HHHHHHHhcCCCEEEEEEeccc
Confidence 9999999999999999999886
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-13 Score=120.55 Aligned_cols=90 Identities=29% Similarity=0.381 Sum_probs=64.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc------------CCcc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL------------DGEE 94 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~------------~~~~ 94 (257)
+.+.++|+||+++|||-|+..+.+.+.. .....|+|..++.+.+....+. .-.-
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVq--------------egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kv 539 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQ--------------EGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKV 539 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccc--------------cccccceeeeccccccchHHHHHHHHHHHhhhhhhcCC
Confidence 4567999999999999999999553221 1223455555544444322110 0011
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
-.+.+||||||+.|.....++.+.||++|+|+|...
T Consensus 540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImh 575 (1064)
T KOG1144|consen 540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMH 575 (1064)
T ss_pred CeeEEecCCCchhhhhhhhccccccceEEEEeehhc
Confidence 358899999999999999999999999999999988
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.4e-12 Score=89.57 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=81.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC--
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH-- 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~-- 105 (257)
+++++++|.+++|||||++.|.+.... -..+..++|+. . ..|||||-
T Consensus 1 MKri~~vG~~gcGKTtL~q~L~G~~~l-----------------------ykKTQAve~~d------~--~~IDTPGEy~ 49 (148)
T COG4917 1 MKRIAFVGQVGCGKTTLFQSLYGNDTL-----------------------YKKTQAVEFND------K--GDIDTPGEYF 49 (148)
T ss_pred CceeEEecccccCchhHHHHhhcchhh-----------------------hcccceeeccC------c--cccCCchhhh
Confidence 357999999999999999999442111 11122345543 1 26999994
Q ss_pred --cccHHHHHHhhhhcceEEEEEecCc-----------------------cCCC-CCCHHHHHHHHHHHhCCCccceEEe
Q psy12244 106 --VDFSNEVTRSLAACQGVVLLIDANQ-----------------------VDLK-NANPEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 106 --~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------~D~~-~~~~~~~~~~~~~~~~~~~~~~i~i 159 (257)
..+..........+|++++|-.+++ +|+. +++.....+.+.+. | ..++|.+
T Consensus 50 ~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~ea-G--a~~IF~~ 126 (148)
T COG4917 50 EHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREA-G--AEPIFET 126 (148)
T ss_pred hhhHHHHHHHHHhhccceeeeeecccCccccCCcccccccccceEEEEecccccchHhHHHHHHHHHHc-C--CcceEEE
Confidence 3344445556688999999998887 7776 44555555555552 4 4579999
Q ss_pred cccccccccccccccCC
Q psy12244 160 WHRRCFSCADCHRSLDS 176 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~~ 176 (257)
|+.+..|+++|+++|..
T Consensus 127 s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 127 SAVDNQGVEELVDYLAS 143 (148)
T ss_pred eccCcccHHHHHHHHHh
Confidence 99999999999998873
|
|
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.2e-12 Score=91.74 Aligned_cols=124 Identities=18% Similarity=0.181 Sum_probs=84.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
...+.++|-.++|||||+|.+.. |.. .+.-+.|.......+. .....+.+||.||+..
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~--g~~--------------~edmiptvGfnmrk~t------kgnvtiklwD~gGq~r 77 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIAR--GQY--------------LEDMIPTVGFNMRKVT------KGNVTIKLWDLGGQPR 77 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEee--ccc--------------hhhhcccccceeEEec------cCceEEEEEecCCCcc
Confidence 45689999999999999998632 110 1122334333322222 2336788999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCCCc---
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNIDK--- 153 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~~~--- 153 (257)
|..++..+.+..++++++|||.+ +|++++-- ..++-..+|+..
T Consensus 78 frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~---~~~li~rmgL~sitd 154 (186)
T KOG0075|consen 78 FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS---KIALIERMGLSSITD 154 (186)
T ss_pred HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc---HHHHHHHhCcccccc
Confidence 99999999999999999999998 44443310 112222233322
Q ss_pred --cceEEecccccccccccccccCC
Q psy12244 154 --KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 --~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.-.|.||++...|++.+.++|.+
T Consensus 155 REvcC~siScke~~Nid~~~~Wli~ 179 (186)
T KOG0075|consen 155 REVCCFSISCKEKVNIDITLDWLIE 179 (186)
T ss_pred ceEEEEEEEEcCCccHHHHHHHHHH
Confidence 23689999999999988887763
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-11 Score=101.75 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=66.2
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc---------cCC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI---------LDG 92 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~---------~~~ 92 (257)
..+.....+|+++|..++|||||+++|+...- .....+.+..+.....+.+... -++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F--------------~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~ 80 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSS--------------IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSE 80 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCc--------------ccccCCceeeeEEEEEEEECCcccccccccccCC
Confidence 44555667899999999999999999965211 1111222222222233343210 013
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.+.||||+|++.|...+..+++.+|++|+|+|.++
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITd 118 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQ 118 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCC
Confidence 45789999999999999999999999999999999885
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-12 Score=102.58 Aligned_cols=130 Identities=26% Similarity=0.279 Sum_probs=83.6
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceee-EEEeecccCCccEEEEEeCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTA-SLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~-~~~~~~~~~~~~~~~~liDtp 103 (257)
...+.||.++|.+|+|||||+|+|++....... +-|.+.+.... ...+.+ ..++|||||
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--------------~vg~~t~~~~~~~~~~~~------~~l~lwDtP 95 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS--------------KVGVGTDITTRLRLSYDG------ENLVLWDTP 95 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee--------------ecccCCCchhhHHhhccc------cceEEecCC
Confidence 456778999999999999999999753332211 01111111111 112222 679999999
Q ss_pred CCcc-------cHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCC----C-------
Q psy12244 104 GHVD-------FSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNA----N------- 137 (257)
Q Consensus 104 G~~~-------~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~----~------- 137 (257)
|.++ +.......+...|++++++++.+ +|+... +
T Consensus 96 G~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~ 175 (296)
T COG3596 96 GLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPS 175 (296)
T ss_pred CcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCC
Confidence 9987 77778889999999999999998 333110 0
Q ss_pred --H----HHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 138 --P----EACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 138 --~----~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
. ++-.+.+.+++. +.-|++.+|+..+.|++.+...+.
T Consensus 176 ~a~~qfi~~k~~~~~~~~q-~V~pV~~~~~r~~wgl~~l~~ali 218 (296)
T COG3596 176 PAIKQFIEEKAEALGRLFQ-EVKPVVAVSGRLPWGLKELVRALI 218 (296)
T ss_pred HHHHHHHHHHHHHHHHHHh-hcCCeEEeccccCccHHHHHHHHH
Confidence 1 111222333322 234788899999999999887765
|
|
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-11 Score=93.96 Aligned_cols=137 Identities=14% Similarity=0.105 Sum_probs=90.0
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
...-..|+|+|.-|+||||++.++-...... ...... .+-..|...+...++... ..+.|||..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~--------~~~l~~-~ki~~tvgLnig~i~v~~------~~l~fwdlgG 78 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKA--------YGGLNP-SKITPTVGLNIGTIEVCN------APLSFWDLGG 78 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhh--------hcCCCH-HHeecccceeecceeecc------ceeEEEEcCC
Confidence 3455679999999999999999873211100 000000 122234444555555544 6899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHH--HHHHHHHHh------C
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEA--CEEQLQTLF------N 150 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~--~~~~~~~~~------~ 150 (257)
++.....+..++..++++++|||+.+ +-..+.+.+. ...++...+ +
T Consensus 79 Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~ 158 (197)
T KOG0076|consen 79 QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIP 158 (197)
T ss_pred hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcC
Confidence 99999999999999999999999998 1111111111 112232222 3
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
-...++.||||.+|+||++-.+++.+
T Consensus 159 ~rd~~~~pvSal~gegv~egi~w~v~ 184 (197)
T KOG0076|consen 159 RRDNPFQPVSALTGEGVKEGIEWLVK 184 (197)
T ss_pred CccCccccchhhhcccHHHHHHHHHH
Confidence 34567999999999999988777763
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=96.62 Aligned_cols=87 Identities=13% Similarity=0.205 Sum_probs=61.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec-ccCCccEEEEEeCCCCCccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS-ILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~ 108 (257)
+|+++|..++|||||+++|+...- ..+..+.+..+.....+.+.. ..++..+.+.||||+|+++|
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f--------------~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~ 67 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQV--------------LGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV 67 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--------------CCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH
Confidence 689999999999999999975221 111112222222222333321 01245578999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.......++.+|++|+|+|.++
T Consensus 68 ~~l~~~~yr~ad~iIlVyDvtn 89 (202)
T cd04102 68 KSTRAVFYNQVNGIILVHDLTN 89 (202)
T ss_pred HHHHHHHhCcCCEEEEEEECcC
Confidence 9888889999999999999886
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-11 Score=107.74 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=59.4
Q ss_pred cEEEEEeCCCCCcc-----cHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCC---C
Q psy12244 94 EYLLNLIDTPGHVD-----FSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNA---N 137 (257)
Q Consensus 94 ~~~~~liDtpG~~~-----~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~---~ 137 (257)
..++.|+||||... +...+...+..+|++++|+|+.. +|+.+. +
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 35789999999854 34456678999999999999986 555321 1
Q ss_pred HHHHHHHHHHHh---CCCccceEEecccccccccccccccCC
Q psy12244 138 PEACEEQLQTLF---NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 ~~~~~~~~~~~~---~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+.+.+.+...+ ..+...+|||||++|.|++.|++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 334444443332 334456999999999999999988874
|
|
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-11 Score=96.65 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=89.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+.++|+++|.+|+|||+|+.+++...- ..+..+.+. +.....+.. ++....+.|+||+|++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f--------------~~~y~ptie-d~y~k~~~v----~~~~~~l~ilDt~g~~ 62 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRF--------------VEDYDPTIE-DSYRKELTV----DGEVCMLEILDTAGQE 62 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccc--------------ccccCCCcc-ccceEEEEE----CCEEEEEEEEcCCCcc
Confidence 357899999999999999999865221 111122111 111222222 4566889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+|..+...+++.+|+.++|++.++ +|+.... ..+..+.+...+ .
T Consensus 63 ~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~---~ 139 (196)
T KOG0395|consen 63 EFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSW---G 139 (196)
T ss_pred cChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhc---C
Confidence 999999999999999999999998 5554321 112222333322 3
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++++||+...|++++|..|..
T Consensus 140 ~~f~E~Sak~~~~v~~~F~~L~r 162 (196)
T KOG0395|consen 140 CAFIETSAKLNYNVDEVFYELVR 162 (196)
T ss_pred CcEEEeeccCCcCHHHHHHHHHH
Confidence 56999999999999999888764
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=94.29 Aligned_cols=115 Identities=18% Similarity=0.233 Sum_probs=74.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+..|+++|++|+|||||++.|+...... ......|. + .... ....+++++||||+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~------------~~~~~~g~-i----~i~~------~~~~~i~~vDtPg~ 93 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ------------NISDIKGP-I----TVVT------GKKRRLTFIECPND 93 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC------------cccccccc-E----EEEe------cCCceEEEEeCCch
Confidence 446779999999999999999997642210 00011121 0 0011 12368899999986
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCC--CHHHHHHHHHHHhC---CCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNA--NPEACEEQLQTLFN---IDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~--~~~~~~~~~~~~~~---~~~ 153 (257)
. ..+...+..+|++++|+|+.. +|+... ..+...+++++.+. ...
T Consensus 94 ~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~ 170 (225)
T cd01882 94 I---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQG 170 (225)
T ss_pred H---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCC
Confidence 4 455667889999999999975 566422 23444555555332 345
Q ss_pred cceEEeccccccc
Q psy12244 154 KSVLRIWHRRCFS 166 (257)
Q Consensus 154 ~~~i~iSa~~g~g 166 (257)
.+++++||++.-.
T Consensus 171 ~ki~~iSa~~~~~ 183 (225)
T cd01882 171 AKLFYLSGIVHGR 183 (225)
T ss_pred CcEEEEeeccCCC
Confidence 6899999988743
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.5e-12 Score=93.72 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=85.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc-----CCccEEEEEeCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL-----DGEEYLLNLIDT 102 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~-----~~~~~~~~liDt 102 (257)
..+...+|.+|+|||+++-++.. +..... --..+.++.....+.|+..- .+....+.+|||
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD--~~F~~q------------FIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDT 74 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTD--GKFNTQ------------FISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDT 74 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecC--Ccccce------------eEEEeecccccceEEEeccCCCCCCcceEEEEeeecc
Confidence 34567899999999999987642 111000 01112233333344443310 123468999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHh
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLF 149 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~ 149 (257)
+|+++|...+-..++.|-+.++++|.+. .|+.+.+ -++...++.+.+
T Consensus 75 AGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky 154 (219)
T KOG0081|consen 75 AGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY 154 (219)
T ss_pred ccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999998 4443221 122223444444
Q ss_pred CCCccceEEecccccccccccccccC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+ .|+|++||-+|.||++..+.+.
T Consensus 155 g---lPYfETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081|consen 155 G---LPYFETSACTGTNVEKAVELLL 177 (219)
T ss_pred C---CCeeeeccccCcCHHHHHHHHH
Confidence 5 5699999999999987665554
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.1e-11 Score=86.58 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=55.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+|+|..|+|||||+++|++..... ........+.+........ ......+.+||++|+..+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~g~~~~~ 64 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPD----------NSVPEETSEITIGVDVIVV------DGDRQSLQFWDFGGQEEFY 64 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS------------------SSTTSCEEEEEEEE------TTEEEEEEEEEESSSHCHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcc----------cccccccCCCcEEEEEEEe------cCCceEEEEEecCccceec
Confidence 58999999999999999998744320 0000011112222111122 2233568999999998877
Q ss_pred HHHHHhhhhcceEEEEEecCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~ 130 (257)
......+..+|++|+|+|+++
T Consensus 65 ~~~~~~~~~~d~~ilv~D~s~ 85 (119)
T PF08477_consen 65 SQHQFFLKKADAVILVYDLSD 85 (119)
T ss_dssp CTSHHHHHHSCEEEEEEECCG
T ss_pred ccccchhhcCcEEEEEEcCCC
Confidence 765666899999999999884
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=84.94 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=66.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+.+|-.++||||++-.|...... ..-.|..++...+.|+. ..|++||..|+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-----------------~~ipTvGFnvetVtykN------~kfNvwdvGGq 71 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-----------------TTIPTVGFNVETVTYKN------VKFNVWDVGGQ 71 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-----------------ccccccceeEEEEEeee------eEEeeeeccCc
Confidence 45677999999999999999998542221 11235555566677776 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.++.|..++....++|||+|+.+
T Consensus 72 d~iRplWrhYy~gtqglIFV~Dsa~ 96 (180)
T KOG0071|consen 72 DKIRPLWRHYYTGTQGLIFVVDSAD 96 (180)
T ss_pred hhhhHHHHhhccCCceEEEEEeccc
Confidence 9999999999999999999999986
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.4e-10 Score=91.34 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=61.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|.+|+|||||+|+|++........ ....|.........+.+ ..+++|||||.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-------------~~~~T~~~~~~~~~~~g------~~i~vIDTPGl 89 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSA-------------FQSETLRVREVSGTVDG------FKLNIIDTPGL 89 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-------------CCCceEEEEEEEEEECC------eEEEEEECCCc
Confidence 356789999999999999999998754322111 11234433333333333 68999999998
Q ss_pred cccHH------H----HHHhhh--hcceEEEEEecCccCCCCCCHHHHHHHHHHHhCC
Q psy12244 106 VDFSN------E----VTRSLA--ACQGVVLLIDANQVDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~~~~------~----~~~~~~--~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~ 151 (257)
.+... . +..++. ..|++++|...+.... ........+.+++.++.
T Consensus 90 ~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~-~~~d~~llk~I~e~fG~ 146 (249)
T cd01853 90 LESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR-DYLDLPLLRAITDSFGP 146 (249)
T ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC-CHHHHHHHHHHHHHhCh
Confidence 86521 1 112222 4677777754332111 11223566677776653
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-10 Score=92.50 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=72.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+|+|++..... .. ..... ....|... ..+.. .....+.+|||||+.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~-~~--~~~~~------~~~~t~~~----~~~~~---~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE-EG--AAPTG------VVETTMKR----TPYPH---PKFPNVTLWDLPGIGST 65 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC-CC--ccccC------ccccccCc----eeeec---CCCCCceEEeCCCCCcc
Confidence 579999999999999999997632110 00 00000 00011110 11110 11146899999998642
Q ss_pred HH---H--HHHhhhhcceEEEEEecCc------------------------cCCCCC----------CHHHHHHHHHHH-
Q psy12244 109 SN---E--VTRSLAACQGVVLLIDANQ------------------------VDLKNA----------NPEACEEQLQTL- 148 (257)
Q Consensus 109 ~~---~--~~~~~~~aD~~ilVvd~~~------------------------~D~~~~----------~~~~~~~~~~~~- 148 (257)
.. . ....+..+|++++|.+..- +|+... ..+..++++++.
T Consensus 66 ~~~~~~~l~~~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~ 145 (197)
T cd04104 66 AFPPDDYLEEMKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC 145 (197)
T ss_pred cCCHHHHHHHhCccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHH
Confidence 11 1 1223567899888865442 565211 122333333332
Q ss_pred ---h---CCCccceEEeccc--ccccccccccccC
Q psy12244 149 ---F---NIDKKSVLRIWHR--RCFSCADCHRSLD 175 (257)
Q Consensus 149 ---~---~~~~~~~i~iSa~--~g~gi~~l~~~i~ 175 (257)
+ +....++|.+|+. .+.|+..|.+.|.
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~ 180 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLL 180 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHH
Confidence 2 2344578999998 5788888777765
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-10 Score=90.22 Aligned_cols=83 Identities=19% Similarity=0.404 Sum_probs=52.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+.+.|.|+|+.|+|||+|+.+|.+.... .|.........+.. .......+.+||+|||.
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~--------------------~T~tS~e~n~~~~~-~~~~~~~~~lvD~PGH~ 60 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTV--------------------PTVTSMENNIAYNV-NNSKGKKLRLVDIPGHP 60 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-----------------------B---SSEEEECCG-SSTCGTCECEEEETT-H
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcC--------------------CeeccccCCceEEe-ecCCCCEEEEEECCCcH
Confidence 3467999999999999999999764211 11111111111110 02334578899999999
Q ss_pred ccHHHHHHh---hhhcceEEEEEecCc
Q psy12244 107 DFSNEVTRS---LAACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~~~~~~~~~---~~~aD~~ilVvd~~~ 130 (257)
++....... ...+.++|+|||+..
T Consensus 61 rlr~~~~~~~~~~~~~k~IIfvvDSs~ 87 (181)
T PF09439_consen 61 RLRSKLLDELKYLSNAKGIIFVVDSST 87 (181)
T ss_dssp CCCHHHHHHHHHHGGEEEEEEEEETTT
T ss_pred HHHHHHHHhhhchhhCCEEEEEEeCcc
Confidence 988776665 788999999999973
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.3e-11 Score=86.47 Aligned_cols=127 Identities=13% Similarity=0.180 Sum_probs=90.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..++.++|-.|+||+|++-++ ..+..+ ....|+..+...+.|+. -++.+||..|+
T Consensus 16 e~e~rililgldGaGkttIlyrl--qvgevv---------------ttkPtigfnve~v~yKN------Lk~~vwdLggq 72 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRL--QVGEVV---------------TTKPTIGFNVETVPYKN------LKFQVWDLGGQ 72 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEc--ccCccc---------------ccCCCCCcCcccccccc------ccceeeEccCc
Confidence 35667999999999999988776 222211 12245566666677765 68999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCCHHHHHHHHHHHhCCC-----
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNANPEACEEQLQTLFNID----- 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~~~~~~~~~~~~~~~----- 152 (257)
......|..++...|.+|+|||+.+ ..+.+........++...+++.
T Consensus 73 tSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r 152 (182)
T KOG0072|consen 73 TSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR 152 (182)
T ss_pred ccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhh
Confidence 9999999999999999999999998 1111111122222333333322
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+|..||.+|+|++...+++.
T Consensus 153 ~~~Iv~tSA~kg~Gld~~~DWL~ 175 (182)
T KOG0072|consen 153 IWQIVKTSAVKGEGLDPAMDWLQ 175 (182)
T ss_pred eeEEEeeccccccCCcHHHHHHH
Confidence 23589999999999999988886
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-10 Score=91.46 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=62.1
Q ss_pred CCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC---C
Q psy12244 91 DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA---N 137 (257)
Q Consensus 91 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~---~ 137 (257)
++....+.||||||+++|...+..+++.+|++|+|+|+++ +|+... .
T Consensus 25 ~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~ 104 (176)
T PTZ00099 25 DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVT 104 (176)
T ss_pred CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCC
Confidence 4556899999999999999988899999999999999987 555321 1
Q ss_pred HHHHHHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 138 PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.++.. .....+ ...++++||++|.||++++++|.+
T Consensus 105 ~~e~~-~~~~~~---~~~~~e~SAk~g~nV~~lf~~l~~ 139 (176)
T PTZ00099 105 YEEGM-QKAQEY---NTMFHETSAKAGHNIKVLFKKIAA 139 (176)
T ss_pred HHHHH-HHHHHc---CCEEEEEECCCCCCHHHHHHHHHH
Confidence 12221 122222 235899999999999999998874
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-10 Score=97.08 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=86.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------CCcccccchHHHh---hhCceEeceeeEEEeec-
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------GSSQVLDSLQVEQ---ERGITVKAQTASLRYTS- 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------~~~~~~d~~~~e~---~~g~t~~~~~~~~~~~~- 88 (257)
.+...|+|.|.+|+|||||+++|.......... +++...|..+.+. .++.-+..........+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 467789999999999999999976533211110 1112223333221 11211111111111110
Q ss_pred ---------ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCC
Q psy12244 89 ---------ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNAN 137 (257)
Q Consensus 89 ---------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~ 137 (257)
..+...+.+.|+||+|...-... ....+|.+++|++... +|+....
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~ 210 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGDNKT 210 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhcccchh
Confidence 01223478999999998843222 4667999999986222 4543322
Q ss_pred -HHHHHHHHHHHhCCC-------ccceEEecccccccccccccccCC
Q psy12244 138 -PEACEEQLQTLFNID-------KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 -~~~~~~~~~~~~~~~-------~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
......+++..+.+. ..|++++||++|.|+++|++.|..
T Consensus 211 ~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~ 257 (332)
T PRK09435 211 AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIED 257 (332)
T ss_pred HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 344555666555431 257999999999999999999984
|
|
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.7e-10 Score=80.66 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=64.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|.++|-.|+||||++.+|-.... +.-..|-.+++..+.+.+ .+++++||..|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-----------------~hltpT~GFn~k~v~~~g-----~f~LnvwDiGGq 72 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-----------------RHLTPTNGFNTKKVEYDG-----TFHLNVWDIGGQ 72 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-----------------hhccccCCcceEEEeecC-----cEEEEEEecCCc
Confidence 5667899999999999999999833111 111223334445555544 389999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
......|.+++.+.|++|+|+|+++
T Consensus 73 r~IRpyWsNYyenvd~lIyVIDS~D 97 (185)
T KOG0074|consen 73 RGIRPYWSNYYENVDGLIYVIDSTD 97 (185)
T ss_pred cccchhhhhhhhccceEEEEEeCCc
Confidence 9999999999999999999999876
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-10 Score=97.96 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=61.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc-----------CCccE
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL-----------DGEEY 95 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~-----------~~~~~ 95 (257)
...+|+|+|.+|+|||||+|+|.+....+ ...++.|+++....+.+.... .....
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v--------------~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~a 85 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPA--------------ENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPA 85 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccc--------------cCCCCCcccceEEEEecccchhhHHHHHcCCcccCCC
Confidence 44579999999999999999996533221 113456666666666554200 00124
Q ss_pred EEEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
++.|+||||... +.......++.+|++++|||+..
T Consensus 86 qi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~ 127 (390)
T PTZ00258 86 QLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFE 127 (390)
T ss_pred CeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCC
Confidence 689999999753 33455667899999999999864
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-10 Score=94.03 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=58.2
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc--------C---CccEEEEE
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL--------D---GEEYLLNL 99 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~--------~---~~~~~~~l 99 (257)
|+|+|.+|+|||||+|+|++..... ...++.|+++..+.+.+.+.. . .....+.|
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~--------------~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~l 66 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA--------------ANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEF 66 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc--------------ccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEE
Confidence 5899999999999999997643321 112455666666655554300 0 01136999
Q ss_pred eCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 100 IDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 100 iDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+|+||..+ +.......++.+|++++|||+..
T Consensus 67 vD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 67 VDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 99999653 33345567789999999999864
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=89.98 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=59.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+|+||||++|+|++......+. + ...+.........+.+ ..+++|||||..
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~--------f-----~s~t~~~~~~~~~~~G------~~l~VIDTPGL~ 97 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSA--------F-----QSEGLRPMMVSRTRAG------FTLNIIDTPGLI 97 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccC--------C-----CCcceeEEEEEEEECC------eEEEEEECCCCC
Confidence 45689999999999999999998754332211 0 0111111111222333 789999999988
Q ss_pred ccHH---HHHHhhh------hcceEEEEEecCccCCCCCCHHHHHHHHHHHhC
Q psy12244 107 DFSN---EVTRSLA------ACQGVVLLIDANQVDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 107 ~~~~---~~~~~~~------~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~ 150 (257)
+... .....+. ..|++++|...+... .........+.+++.||
T Consensus 98 d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG 149 (313)
T TIGR00991 98 EGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFG 149 (313)
T ss_pred chHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhh
Confidence 6422 1222222 588999995433211 11122445666777665
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.6e-10 Score=94.94 Aligned_cols=88 Identities=15% Similarity=0.207 Sum_probs=59.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc--------cCC---ccEEE
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------LDG---EEYLL 97 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------~~~---~~~~~ 97 (257)
.+|+|+|.+|+|||||+|+|++....+ ...++.|+++....+.+... +.. ....+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v--------------~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i 68 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA--------------ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATI 68 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee--------------cccccccccceEEEEEeccccchhhHHhcCCccccCceE
Confidence 479999999999999999997644211 11245566666555554330 000 11368
Q ss_pred EEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 98 NLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 98 ~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.|+|+||... +.......++.+|++++|||+..
T Consensus 69 ~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 69 EFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred EEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 9999999753 33345667889999999999964
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=86.08 Aligned_cols=103 Identities=22% Similarity=0.307 Sum_probs=61.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
++|+++|.+|+||||++|.|++........ .....|.........+.+ ..+.+|||||+.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~------------~~~~~t~~~~~~~~~~~g------~~v~VIDTPGl~d~ 62 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGS------------SAKSVTQECQKYSGEVDG------RQVTVIDTPGLFDS 62 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--T------------TTSS--SS-EEEEEEETT------EEEEEEE--SSEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecc------------ccCCcccccceeeeeecc------eEEEEEeCCCCCCC
Confidence 479999999999999999998754321110 112233333344445555 7899999999865
Q ss_pred ------cHHHHHH----hhhhcceEEEEEecCccCCCCCCHHHHHHHHHHHhCCC
Q psy12244 108 ------FSNEVTR----SLAACQGVVLLIDANQVDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 108 ------~~~~~~~----~~~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
....+.. .....+++|||+....+. .......+.+.+.||..
T Consensus 63 ~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t---~~~~~~l~~l~~~FG~~ 114 (212)
T PF04548_consen 63 DGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFT---EEDREVLELLQEIFGEE 114 (212)
T ss_dssp TEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-S---HHHHHHHHHHHHHHCGG
T ss_pred cccHHHHHHHHHHHHHhccCCCeEEEEEEecCcch---HHHHHHHHHHHHHccHH
Confidence 1222332 234589999999877432 22456677778877743
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-11 Score=92.23 Aligned_cols=130 Identities=21% Similarity=0.250 Sum_probs=86.8
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.++..+++|+|..++||||++.++|. |...... +..+..+.-..++.. ..+.....+|||+|
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCk--gifTkdy------------kktIgvdflerqi~v----~~Edvr~mlWdtag 78 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCK--GIFTKDY------------KKTIGVDFLERQIKV----LIEDVRSMLWDTAG 78 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhc--ccccccc------------ccccchhhhhHHHHh----hHHHHHHHHHHhcc
Confidence 35667899999999999999999974 2222210 001111111111111 22335677999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++.|-..+..++++|.+.+||++.++ ||+.+.. .....+.+.+.+.
T Consensus 79 qeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~--- 155 (246)
T KOG4252|consen 79 QEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH--- 155 (246)
T ss_pred chhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhh---
Confidence 99999999999999999999999888 6664432 1122223333332
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++.+|++...|+..+|.+|.
T Consensus 156 ~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 156 KRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred hhhhhhhhhhhhhhHHHHHHHH
Confidence 4578999999999999988886
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=89.46 Aligned_cols=73 Identities=22% Similarity=0.313 Sum_probs=42.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+|+|+........... +.......+.+++. ........ ++....+++|||||+.+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~----~~~~~~~~~T~~i~--~~~~~i~~--~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPP----DPAEEHIDKTVEIK--SSKAEIEE--NGVKLKLTVIDTPGFGD 75 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCC----CccccccCCceEEE--EEEEEEEE--CCEEEEEEEEecCCccc
Confidence 468999999999999999999764332211100 00001112222233 22222322 44557899999999866
Q ss_pred c
Q psy12244 108 F 108 (257)
Q Consensus 108 ~ 108 (257)
+
T Consensus 76 ~ 76 (276)
T cd01850 76 N 76 (276)
T ss_pred c
Confidence 4
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=92.00 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=54.0
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeec----------------c-cCC-
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTS----------------I-LDG- 92 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~----------------~-~~~- 92 (257)
|+++|.+|+|||||+|+|+.....+.. .+..|+++......+.. . .++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~--------------~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 66 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIAN--------------YPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGK 66 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccC--------------CCCccccceeEEEEEecCCCchhhhhhhcccccccccCc
Confidence 589999999999999999764321111 11223333333222210 0 011
Q ss_pred ccEEEEEeCCCCCc----ccH---HHHHHhhhhcceEEEEEecCc
Q psy12244 93 EEYLLNLIDTPGHV----DFS---NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 ~~~~~~liDtpG~~----~~~---~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+...+.+|||||.. .+. ......++.||++++|+|+..
T Consensus 67 ~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 67 RYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 23579999999983 332 345567899999999999985
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=90.99 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=82.2
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc--
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-- 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-- 107 (257)
-|++||-||+|||||++++......+....+ .|+.++...+.... ...|.+-|.||...
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpF--------------TTL~PnLGvV~~~~-----~~sfv~ADIPGLIEGA 221 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPF--------------TTLVPNLGVVRVDG-----GESFVVADIPGLIEGA 221 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCcc--------------ccccCcccEEEecC-----CCcEEEecCccccccc
Confidence 5789999999999999999776655544322 23444444444322 15689999999754
Q ss_pred -----cHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCC--CHHHHHHHH
Q psy12244 108 -----FSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNA--NPEACEEQL 145 (257)
Q Consensus 108 -----~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~--~~~~~~~~~ 145 (257)
+-...+..+..+.+++.|||.+. +|+... ..+...+.+
T Consensus 222 s~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l 301 (369)
T COG0536 222 SEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKAL 301 (369)
T ss_pred ccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHH
Confidence 33445677788899999999996 664322 233334444
Q ss_pred HHHhCCCccceEEecccccccccccccccC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+..+.. ..++|||.+++|+++|.+.+.
T Consensus 302 ~~~~~~~--~~~~ISa~t~~g~~~L~~~~~ 329 (369)
T COG0536 302 AEALGWE--VFYLISALTREGLDELLRALA 329 (369)
T ss_pred HHhcCCC--cceeeehhcccCHHHHHHHHH
Confidence 4433322 123399999999998876665
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-09 Score=86.24 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=55.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|+.++||||+.+.+......- ....-+.|.+.....+.+.+. ..+++||+||+..+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-------------dT~~L~~T~~ve~~~v~~~~~-----~~l~iwD~pGq~~~~ 62 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-------------DTLRLEPTIDVEKSHVRFLSF-----LPLNIWDCPGQDDFM 62 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-------------GGGG-----SEEEEEEECTTS-----CEEEEEEE-SSCSTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-------------hccccCCcCCceEEEEecCCC-----cEEEEEEcCCccccc
Confidence 58999999999999999886432211 112234666665555654431 589999999998876
Q ss_pred HH-----HHHhhhhcceEEEEEecCc
Q psy12244 110 NE-----VTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 110 ~~-----~~~~~~~aD~~ilVvd~~~ 130 (257)
.. ....++.++++|+|+|+..
T Consensus 63 ~~~~~~~~~~if~~v~~LIyV~D~qs 88 (232)
T PF04670_consen 63 ENYFNSQREEIFSNVGVLIYVFDAQS 88 (232)
T ss_dssp HTTHTCCHHHHHCTESEEEEEEETT-
T ss_pred cccccccHHHHHhccCEEEEEEEccc
Confidence 65 3456788999999999994
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-09 Score=93.83 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=55.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc-----------------cC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI-----------------LD 91 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-----------------~~ 91 (257)
.+|+|+|.+|+|||||+|+|++....+.. .++.|+++.......... .+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~--------------y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~ 67 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIAN--------------YPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCID 67 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccC--------------CCCcceeeeeeeeeeccCCchhhhhhhhccccccccC
Confidence 57999999999999999999754322111 122343433332221000 01
Q ss_pred -CccEEEEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecC
Q psy12244 92 -GEEYLLNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 92 -~~~~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
.....+.|+||||... .....+..++.+|++++|+|+.
T Consensus 68 ~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 68 GTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 1225789999999642 3335566689999999999996
|
|
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.4e-10 Score=87.52 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=84.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...++++||..++|||+|+-.+. ++........+++|.+ ...+... +++.+.+.+|||+|++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t--~~~fp~~yvPTVFdny-------------s~~v~V~---dg~~v~L~LwDTAGqe 64 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYT--TNAFPEEYVPTVFDNY-------------SANVTVD---DGKPVELGLWDTAGQE 64 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEec--cCcCcccccCeEEccc-------------eEEEEec---CCCEEEEeeeecCCCc
Confidence 34679999999999999997763 3332222222222211 1122221 3667889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH---------------HHH
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP---------------EAC 141 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~---------------~~~ 141 (257)
+|.......+..+|.++++++..+ .|+.. +. ...
T Consensus 65 dYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~-d~~~~~~l~~~~~~~Vt~~~ 143 (198)
T KOG0393|consen 65 DYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD-DPSTLEKLQRQGLEPVTYEQ 143 (198)
T ss_pred ccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh-CHHHHHHHHhccCCcccHHH
Confidence 998866678899999999888777 44431 11 011
Q ss_pred HHHHHHHhCCCccceEEecccccccccccccccCCC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
...+++.+| ...++++||++..|+.++|+.....
T Consensus 144 g~~lA~~ig--a~~y~EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 144 GLELAKEIG--AVKYLECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred HHHHHHHhC--cceeeeehhhhhCCcHHHHHHHHHH
Confidence 112333333 2468999999999999988766543
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-09 Score=89.22 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=76.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
...+.|++||.+|+|||||+++|+... ...+... --|.++........ ....+.+.||-|+
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aa-l~p~drL-------------FATLDpT~h~a~Lp-----sg~~vlltDTvGF 236 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAA-LYPNDRL-------------FATLDPTLHSAHLP-----SGNFVLLTDTVGF 236 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhh-cCccchh-------------heeccchhhhccCC-----CCcEEEEeechhh
Confidence 345689999999999999999997422 2211100 11333322222222 1257889999998
Q ss_pred ccc--------HHHHHHhhhhcceEEEEEecCc----------------cCCCCCC-HHHHHHHHHHHhCC-------Cc
Q psy12244 106 VDF--------SNEVTRSLAACQGVVLLIDANQ----------------VDLKNAN-PEACEEQLQTLFNI-------DK 153 (257)
Q Consensus 106 ~~~--------~~~~~~~~~~aD~~ilVvd~~~----------------~D~~~~~-~~~~~~~~~~~~~~-------~~ 153 (257)
-.- ...++.....+|+++-|+|.+. ++.+.+- .+.+.+ +-..... ..
T Consensus 237 isdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mie-VdnkiD~e~~~~e~E~ 315 (410)
T KOG0410|consen 237 ISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIE-VDNKIDYEEDEVEEEK 315 (410)
T ss_pred hhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHh-hccccccccccCcccc
Confidence 651 1223444567999999999997 3332211 111111 1000000 01
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++||++|+|++++.+.++
T Consensus 316 n~~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 316 NLDVGISALTGDGLEELLKAEE 337 (410)
T ss_pred CCccccccccCccHHHHHHHHH
Confidence 1258999999999999988776
|
|
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-09 Score=80.41 Aligned_cols=131 Identities=12% Similarity=0.206 Sum_probs=92.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..+|.++|.+..|||||+-.+++ +.+.++......++.....+.. .+....+.+||..|++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~--------------~~~de~~~q~~GvN~mdkt~~i----~~t~IsfSIwdlgG~~ 80 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQ--------------NEYDEEYTQTLGVNFMDKTVSI----RGTDISFSIWDLGGQR 80 (205)
T ss_pred eEEEEEeecccccCceeeehhhhc--------------chhHHHHHHHhCccceeeEEEe----cceEEEEEEEecCCcH
Confidence 357899999999999999988754 2233333333333322223332 3455789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
+|..+..-+...+-+++|++|.+. +|++.+..+.+..+.+.+...-.
T Consensus 81 ~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn 160 (205)
T KOG1673|consen 81 EFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMN 160 (205)
T ss_pred hhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 998887777788888999999998 66665444455555555444444
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++.|.+|+.+..|++.+|..+.
T Consensus 161 AsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 161 ASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred CcEEEeeccccccHHHHHHHHH
Confidence 6689999999999998887654
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-10 Score=94.64 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=45.1
Q ss_pred EEEEeCCCCCcccHHHHHHh------h--hhcceEEEEEecCc-------------------------------cCCCCC
Q psy12244 96 LLNLIDTPGHVDFSNEVTRS------L--AACQGVVLLIDANQ-------------------------------VDLKNA 136 (257)
Q Consensus 96 ~~~liDtpG~~~~~~~~~~~------~--~~aD~~ilVvd~~~-------------------------------~D~~~~ 136 (257)
.+.++|||||.++...+... + ...=++++++|+.. +|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 68899999998855443332 2 23446889999987 676541
Q ss_pred C---------------------HHHHHHHHHHHh-CCCcc-ceEEecccccccccccccccC
Q psy12244 137 N---------------------PEACEEQLQTLF-NIDKK-SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 137 ~---------------------~~~~~~~~~~~~-~~~~~-~~i~iSa~~g~gi~~l~~~i~ 175 (257)
. .....+.+.+.+ .+... +++++|+++++|+++|+..+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id 233 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAID 233 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHH
Confidence 1 122222334433 33334 699999999999999987765
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=81.39 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=52.5
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCC---CCHHHHHHHHHHHh
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKN---ANPEACEEQLQTLF 149 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~---~~~~~~~~~~~~~~ 149 (257)
....+|+|.|..- ..... ...+|.++.|+|+.. +|+.+ .+.+...+.++..
T Consensus 92 ~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~- 167 (199)
T TIGR00101 92 LEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKM- 167 (199)
T ss_pred CCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhccccccccHHHHHHHHHHh-
Confidence 5678999999321 11111 122688999999876 56543 3345555666664
Q ss_pred CCCccceEEecccccccccccccccCC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+..++|++||++|+|+++++++|.+
T Consensus 168 -~~~~~i~~~Sa~~g~gi~el~~~i~~ 193 (199)
T TIGR00101 168 -RGEKPFIFTNLKTKEGLDTVIDWIEH 193 (199)
T ss_pred -CCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 23578999999999999999998874
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-09 Score=82.14 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=29.3
Q ss_pred EEEEEeCCCCCcc----cHHHHHHhhhhcceEEEEEecCc
Q psy12244 95 YLLNLIDTPGHVD----FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 95 ~~~~liDtpG~~~----~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.|+||||..+ ....+..++..+|++|+|+++..
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~ 140 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQ 140 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTS
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCc
Confidence 4689999999865 22556777899999999999885
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.6e-08 Score=88.90 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=61.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..+|+++|.+|+|||||+|.|++........ ...+.| ........+.+ ..+.+|||||..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss------------~~~~TT-r~~ei~~~idG------~~L~VIDTPGL~ 177 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDA------------FGMGTT-SVQEIEGLVQG------VKIRVIDTPGLK 177 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccC------------CCCCce-EEEEEEEEECC------ceEEEEECCCCC
Confidence 34689999999999999999998754322111 011222 22122222333 679999999987
Q ss_pred ccH------HH----HHHhhh--hcceEEEEEecCccCCCCCCHHHHHHHHHHHhCCC
Q psy12244 107 DFS------NE----VTRSLA--ACQGVVLLIDANQVDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 107 ~~~------~~----~~~~~~--~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
+.. .. ....+. .+|++|+|..... ...........+.+++.||..
T Consensus 178 dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~-~~~D~eD~~aLr~Iq~lFG~~ 234 (763)
T TIGR00993 178 SSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDM-QTRDSNDLPLLRTITDVLGPS 234 (763)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC-ccccHHHHHHHHHHHHHhCHH
Confidence 631 12 222333 4788888875431 111111235677788888644
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5e-08 Score=83.43 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=59.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc----------c--CCccEE
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI----------L--DGEEYL 96 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----------~--~~~~~~ 96 (257)
.+++|||.||+|||||+|+++.....+.+..+ .|++++...+....- | .-....
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF--------------~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ 68 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPF--------------CTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAP 68 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCc--------------ccccCCeeEEecCchHHHHHHHhcCCCCcEEeee
Confidence 57999999999999999999875533333222 233333333222110 0 011257
Q ss_pred EEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 97 LNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 97 ~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+.|+|.+|... +-...+..++.+|+++.|||+..
T Consensus 69 ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 69 VEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 89999999754 45566778999999999999996
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-08 Score=80.52 Aligned_cols=146 Identities=13% Similarity=0.166 Sum_probs=78.0
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCcccc-----CCCcccccchHHHhhhCce-EeceeeEEEe-ec------c-
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-----SGSSQVLDSLQVEQERGIT-VKAQTASLRY-TS------I- 89 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~-----~~~~~~~d~~~~e~~~g~t-~~~~~~~~~~-~~------~- 89 (257)
+...+++|+++|+.|+|||||+++++........ .+.....|....+ +.+.. +......... .. +
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHHH
Confidence 4457899999999999999999999876332111 0111112332222 22211 1111110000 00 0
Q ss_pred -cCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCC---CHHHHHH
Q psy12244 90 -LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNA---NPEACEE 143 (257)
Q Consensus 90 -~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~---~~~~~~~ 143 (257)
.......+.||+|.|...... ......+..+.|+|+.. +|+.+. +..+..+
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~ 173 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPLKYPGMFKEADLIVINKADLAEAVGFDVEKMKA 173 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhhhhHhHHhhCCEEEEEHHHccccchhhHHHHHH
Confidence 001134788999999211110 11112344556666654 666432 1334444
Q ss_pred HHHHHhCCCccceEEecccccccccccccccC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++.. +..|++++||++|.|++++++++.
T Consensus 174 ~l~~~~--~~~~i~~~Sa~~g~gv~~l~~~i~ 203 (207)
T TIGR00073 174 DAKKIN--PEAEIILMSLKTGEGLDEWLEFLE 203 (207)
T ss_pred HHHHhC--CCCCEEEEECCCCCCHHHHHHHHH
Confidence 444432 346899999999999999998876
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8e-09 Score=96.27 Aligned_cols=60 Identities=43% Similarity=0.738 Sum_probs=55.5
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCcc----ccCChhhHhhhCceEeeeeeeC
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ----VLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~----~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+.|++.+.+|+++||+|+.++|++..|.+.++|... ++|+++.|++|||||+++.+++
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~ 70 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTL 70 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEE
Confidence 45679999999999999999999999999999988855 9999999999999999999874
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-08 Score=78.54 Aligned_cols=57 Identities=23% Similarity=0.218 Sum_probs=37.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+..+|+++|.+|+|||||+|+|+........ ..+|.|.... .+... ..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-------------~~~g~T~~~~--~~~~~-------~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-------------PIPGETKVWQ--YITLM-------KRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-------------CCCCeeEeEE--EEEcC-------CCEEEEECcCC
Confidence 3467899999999999999999764433222 2345554322 11111 24789999994
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-08 Score=77.62 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=81.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccc-----cCCCcccccchHHHhhhC-ceEeceeeEEEeec-------c----c
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVL-----SSGSSQVLDSLQVEQERG-ITVKAQTASLRYTS-------I----L 90 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~-----~~~~~~~~d~~~~e~~~g-~t~~~~~~~~~~~~-------~----~ 90 (257)
.+.|.+.|++|||||+|+.+++.....-. ..+..+..|.....+..+ ..+...+...+... + .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 57899999999999999999876432211 113333333333333122 12222222111000 0 0
Q ss_pred CCccEEEEEeCCCCCcccHHHHHHhhhhcc-eEEEEEecCc----------------------cCC---CCCCHHHHHHH
Q psy12244 91 DGEEYLLNLIDTPGHVDFSNEVTRSLAACQ-GVVLLIDANQ----------------------VDL---KNANPEACEEQ 144 (257)
Q Consensus 91 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD-~~ilVvd~~~----------------------~D~---~~~~~~~~~~~ 144 (257)
+.....+.||...| ...... .....| +-|+|+|... .|+ .+.+.+.+.+.
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~d 168 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLAPYVGADLEVMARD 168 (202)
T ss_pred cCCcCCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCCCceeEeeEEEEehHHhHHHhCccHHHHHHH
Confidence 01114677788777 211111 112233 6778888877 444 34566777777
Q ss_pred HHHHhCCCccceEEecccccccccccccccC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.++. .+..||+++|+++|+|++++.+++.
T Consensus 169 a~~~--np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 169 AKEV--NPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred HHHh--CCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 7765 3567899999999999999988876
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=82.62 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=61.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC---CCcccccchHHHhhhC---ceEecee---eEEEeecccCCccEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS---GSSQVLDSLQVEQERG---ITVKAQT---ASLRYTSILDGEEYL 96 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~---~~~~~~d~~~~e~~~g---~t~~~~~---~~~~~~~~~~~~~~~ 96 (257)
.....|+++|++++|||||+|+|........-. ......|.++.+ ..| .|.++.+ ..++.... ++....
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs-~~GktItTTePkfvP~kAvEI~~~-~~~~~~ 92 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQS-AAGKTIMTTEPKFVPNEAVEININ-EGTKFK 92 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcC-CCCCCcccCCCccccCcceEEecc-CCCccc
Confidence 345569999999999999999998763222111 111122222211 235 4555555 33444331 455578
Q ss_pred EEEeCCCCCcc-------------------------cHHH----HHHhhh-hcceEEEEE-ecC
Q psy12244 97 LNLIDTPGHVD-------------------------FSNE----VTRSLA-ACQGVVLLI-DAN 129 (257)
Q Consensus 97 ~~liDtpG~~~-------------------------~~~~----~~~~~~-~aD~~ilVv-d~~ 129 (257)
+.|+||+|+.+ |... +...+. .+|..|+|. |++
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgs 156 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGT 156 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCC
Confidence 99999999754 2222 333455 789999999 886
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-08 Score=78.85 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=38.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+++++|.+|+|||||+|+|++...... ...+|.|...... .+. ..+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~-------------~~~pg~T~~~~~~--~~~-------~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV-------------GATPGVTKSMQEV--HLD-------KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee-------------cCCCCeEcceEEE--EeC-------CCEEEEECcCC
Confidence 46899999999999999999986543322 2345666643322 221 35889999994
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-08 Score=89.11 Aligned_cols=64 Identities=73% Similarity=0.988 Sum_probs=57.3
Q ss_pred CCcchhhhcceeeEeeecccchhhHHHHHHhhCCccc-CCCccccCChhhHhhhCceEeeeeeeC
Q psy12244 194 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 194 ~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~-~g~~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+|.++.|+++++.||+.||+|+.|+++..+|++.+ .+..+++|.++.|+||||||++..+++
T Consensus 53 ~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasi 117 (650)
T KOG0462|consen 53 SLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASI 117 (650)
T ss_pred ccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEE
Confidence 3567788999999999999999999999999998765 466889999999999999999988764
|
|
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-08 Score=78.89 Aligned_cols=83 Identities=19% Similarity=0.361 Sum_probs=60.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..+.|.++|..|+|||+|+-+|++... +..-.++..+.+.+.+.. ..+++||.|||.
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~-----------------~~TvtSiepn~a~~r~gs------~~~~LVD~PGH~ 93 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSH-----------------RGTVTSIEPNEATYRLGS------ENVTLVDLPGHS 93 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCc-----------------cCeeeeeccceeeEeecC------cceEEEeCCCcH
Confidence 346799999999999999999965311 011123444455555544 458899999999
Q ss_pred ccHHHHHHhhh---hcceEEEEEecCccC
Q psy12244 107 DFSNEVTRSLA---ACQGVVLLIDANQVD 132 (257)
Q Consensus 107 ~~~~~~~~~~~---~aD~~ilVvd~~~~D 132 (257)
+........+. .+-+++||||+...+
T Consensus 94 rlR~kl~e~~~~~~~akaiVFVVDSa~f~ 122 (238)
T KOG0090|consen 94 RLRRKLLEYLKHNYSAKAIVFVVDSATFL 122 (238)
T ss_pred HHHHHHHHHccccccceeEEEEEeccccc
Confidence 98887777775 788999999998644
|
|
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-09 Score=85.37 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=23.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
+++..|.++|..|+||||++.+|......
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~ 45 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHA 45 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence 45677999999999999999999764443
|
|
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=71.11 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=60.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+.-+++++|--|+|||||+..|-...-. +.-.|.-+........+ ..++-+|..||
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-----------------qhvPTlHPTSE~l~Ig~------m~ftt~DLGGH 74 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-----------------QHVPTLHPTSEELSIGG------MTFTTFDLGGH 74 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc-----------------ccCCCcCCChHHheecC------ceEEEEccccH
Confidence 34567999999999999999988321111 11123322233333444 68899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..-...+..++..+|+++++||+-+
T Consensus 75 ~qArr~wkdyf~~v~~iv~lvda~d 99 (193)
T KOG0077|consen 75 LQARRVWKDYFPQVDAIVYLVDAYD 99 (193)
T ss_pred HHHHHHHHHHHhhhceeEeeeehhh
Confidence 9999999999999999999999987
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-08 Score=77.86 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=34.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
+.++++|++|||||||+|+|+....... ........+|.........+.+.. ...+|||||+.+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t--------~~is~~~~rGkHTTt~~~l~~l~~-------g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKT--------GEISEKTGRGKHTTTHRELFPLPD-------GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------------S--------------SEEEEEETT-------SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhh--------hhhhcccCCCcccCCCeeEEecCC-------CcEEEECCCCCcc
Confidence 6799999999999999999976432211 111222223322222233333321 3469999998765
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.2e-08 Score=78.38 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=58.2
Q ss_pred CCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 18 TPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 18 ~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
....++|..+.+.+++.|.+|+|||+|+|.++......... ....|.|...+...+. ..+
T Consensus 126 ~~~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~-----------k~K~g~Tq~in~f~v~---------~~~ 185 (320)
T KOG2486|consen 126 VTAEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTS-----------KSKNGKTQAINHFHVG---------KSW 185 (320)
T ss_pred ceeccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhc-----------CCCCccceeeeeeecc---------ceE
Confidence 33446777788899999999999999999997644322111 1134445443333221 578
Q ss_pred EEeCCCCCc----------ccHHHHHHhh---hhcceEEEEEecCc
Q psy12244 98 NLIDTPGHV----------DFSNEVTRSL---AACQGVVLLIDANQ 130 (257)
Q Consensus 98 ~liDtpG~~----------~~~~~~~~~~---~~aD~~ilVvd~~~ 130 (257)
.++|.||+. ++.+.+..++ ...=.+++++|++.
T Consensus 186 ~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv 231 (320)
T KOG2486|consen 186 YEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASV 231 (320)
T ss_pred EEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccC
Confidence 899999932 2444444444 23344677788876
|
|
| >KOG0052|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.7e-09 Score=88.16 Aligned_cols=94 Identities=33% Similarity=0.504 Sum_probs=76.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
...++|+++||.++||||+.. +.++.++.. .++|.+|....|++++++++.....+
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~---- 77 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF---- 77 (391)
T ss_pred ccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecc----
Confidence 345789999999999999887 344544433 56799999999999998866433333
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEec
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~ 128 (257)
....+.++++|.|||.+|.+++..+.+.||++++++.+
T Consensus 78 --~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~ 115 (391)
T KOG0052|consen 78 --ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 115 (391)
T ss_pred --cceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEee
Confidence 33448999999999999999999999999999999988
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=82.00 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+.+|+|+|.+|+|||||+|+|.+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrG 57 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRG 57 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999954
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-08 Score=81.49 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=81.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------CCcccccchHHH---hhhCceEeceeeEEEeec--
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------GSSQVLDSLQVE---QERGITVKAQTASLRYTS-- 88 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------~~~~~~d~~~~e---~~~g~t~~~~~~~~~~~~-- 88 (257)
+.+.|+|.|++|+|||||+++|.......... .++..-|+.+.. .+.++-+.+....=...+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 56789999999999999999987533221111 344455554433 233443332221111100
Q ss_pred --------ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------cCC---CCCC---HHH
Q psy12244 89 --------ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------VDL---KNAN---PEA 140 (257)
Q Consensus 89 --------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------~D~---~~~~---~~~ 140 (257)
+++-..+.+.||.|.|..+-.- .-...+|.+++|+-... .|+ .++| .+.
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi~vVNKaD~~gA~~ 184 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIADIFVVNKADRPGADR 184 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SEEEEE--SHHHHHH
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhccEEEEeCCChHHHHH
Confidence 0122357888999999775332 23567899999886665 222 1223 234
Q ss_pred HHHHHHHHhCC-------CccceEEecccccccccccccccCC
Q psy12244 141 CEEQLQTLFNI-------DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 141 ~~~~~~~~~~~-------~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+++..+.+ ...|++.+||.+|.|+++|++.|..
T Consensus 185 ~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 185 TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 44455544421 1247999999999999999998874
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-07 Score=81.40 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=49.2
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCCH-HHHHH----HHH
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNANP-EACEE----QLQ 146 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~~-~~~~~----~~~ 146 (257)
.+.+.|+||||...-. ...+..+|.++++.+... +|+..... ..... .+.
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~ 202 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVVNKADGEGATNVTIARLMLALALE 202 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEEEcccccchhHHHHHHHHHHHHHh
Confidence 5789999999976322 234566788877764442 66654321 11111 111
Q ss_pred HHhC---CCccceEEecccccccccccccccCC
Q psy12244 147 TLFN---IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 147 ~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.... ....+++++||++|.|+++++++|..
T Consensus 203 ~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~ 235 (300)
T TIGR00750 203 EIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE 235 (300)
T ss_pred hccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 1111 01135899999999999999998874
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.6e-08 Score=74.09 Aligned_cols=57 Identities=28% Similarity=0.371 Sum_probs=38.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+..+++++|.+|+|||||+|+|+...... ....++.|.......+ . ..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-------------~~~~~~~t~~~~~~~~--~-------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK-------------VGNVPGTTTSQQEVKL--D-------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc-------------ccCCCCcccceEEEEe--c-------CCEEEEECCCC
Confidence 45779999999999999999997644322 1223455555433221 1 35889999995
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-07 Score=77.47 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=31.5
Q ss_pred cCCCCC---CHHHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 131 VDLKNA---NPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 131 ~D~~~~---~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+|+... +.+...+.+++.. +..++|++||++|+|+++|.++|.
T Consensus 240 iDLl~~~~~dle~~~~~lr~ln--p~a~I~~vSA~tGeGld~L~~~L~ 285 (290)
T PRK10463 240 VDLLPYLNFDVEKCIACAREVN--PEIEIILISATSGEGMDQWLNWLE 285 (290)
T ss_pred HHcCcccHHHHHHHHHHHHhhC--CCCcEEEEECCCCCCHHHHHHHHH
Confidence 777542 3455555665542 456799999999999999998886
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.7e-08 Score=80.86 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=20.4
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++|++++.|++++.++|.+
T Consensus 222 ~~vi~iSa~~~~gl~~L~~~I~~ 244 (253)
T PRK13768 222 VRVIPVSAKTGEGFDELYAAIQE 244 (253)
T ss_pred CcEEEEECCCCcCHHHHHHHHHH
Confidence 46899999999999999998874
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.2e-07 Score=72.65 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=22.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..+.|+++|+.++||||++++|++..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCC
Confidence 45679999999999999999998753
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-07 Score=76.44 Aligned_cols=84 Identities=19% Similarity=0.295 Sum_probs=61.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
.-.+|+++|-|.+|||||+..+........+. .-.|.......+.|++ ..++++|.||..
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~y--------------eFTTLtcIpGvi~y~g------a~IQllDLPGIi 120 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASY--------------EFTTLTCIPGVIHYNG------ANIQLLDLPGII 120 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhce--------------eeeEEEeecceEEecC------ceEEEecCcccc
Confidence 34579999999999999999997654433221 1134555566677777 789999999975
Q ss_pred c-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 107 D-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
. --.+....++.||++++|+|++.
T Consensus 121 eGAsqgkGRGRQviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 121 EGASQGKGRGRQVIAVARTADLILMVLDATK 151 (364)
T ss_pred cccccCCCCCceEEEEeecccEEEEEecCCc
Confidence 4 22345556788999999999986
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-07 Score=72.19 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.2
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+++++|.+|+|||||+|+|+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999754
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-07 Score=75.19 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=65.8
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHH-----HHhCCCccceE
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQ-----TLFNIDKKSVL 157 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~-----~~~~~~~~~~i 157 (257)
|...+...+..+|++++|+|+.+ +|+.... .....+... +..+....+++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI 103 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence 56666667777888888888765 7764322 111111111 11233234689
Q ss_pred EecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 158 RIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
++||++|.|+++|++.|.... + ....+.++|..+.||+++.+.++...
T Consensus 104 ~vSA~~~~gi~eL~~~l~~~l-----~---------------~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 104 LISAKKGWGVEELINAIKKLA-----K---------------KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred EEECCCCCCHHHHHHHHHHHh-----h---------------cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 999999999999998887321 1 11357899999999999999998753
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-07 Score=75.03 Aligned_cols=63 Identities=27% Similarity=0.280 Sum_probs=38.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+++++|.+|+|||||+|+|+......... .........+|.|.+.....+ . ..+.+|||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~-----~~~~~~~~~~gtT~~~~~~~~--~-------~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL-----KDLLTTSPIPGTTLDLIKIPL--G-------NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc-----ccccccCCCCCeeeeeEEEec--C-------CCCEEEeCcCC
Confidence 579999999999999999998754211100 000112234566665432222 1 14689999995
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-07 Score=80.97 Aligned_cols=126 Identities=19% Similarity=0.236 Sum_probs=72.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
...+++.+||.+|+||||++|.+......+. ++. -.|...-...+.|+. ..|+++||||.
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevq--pYa------------FTTksL~vGH~dykY------lrwQViDTPGI 225 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ--PYA------------FTTKLLLVGHLDYKY------LRWQVIDTPGI 225 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccC--Ccc------------cccchhhhhhhhhhe------eeeeecCCccc
Confidence 4567899999999999999988743222110 000 012222233344444 57999999997
Q ss_pred cccH------HH--HHHhh-hhcceEEEEEecCc-------------------------------cCCC-CCCHHHHHHH
Q psy12244 106 VDFS------NE--VTRSL-AACQGVVLLIDANQ-------------------------------VDLK-NANPEACEEQ 144 (257)
Q Consensus 106 ~~~~------~~--~~~~~-~~aD~~ilVvd~~~-------------------------------~D~~-~~~~~~~~~~ 144 (257)
-+-. -+ .+.++ +.--+|+++.|.+. +|+- ..+..+..++
T Consensus 226 LD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ 305 (620)
T KOG1490|consen 226 LDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQE 305 (620)
T ss_pred cCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHH
Confidence 5511 11 11121 22245888999887 5552 2233333322
Q ss_pred H-HHHhCCCccceEEecccccccccccc
Q psy12244 145 L-QTLFNIDKKSVLRIWHRRCFSCADCH 171 (257)
Q Consensus 145 ~-~~~~~~~~~~~i~iSa~~g~gi~~l~ 171 (257)
+ +..-.....+++..|+.+-+|+.++.
T Consensus 306 ll~~~~~~~~v~v~~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 306 LLQTIIDDGNVKVVQTSCVQEEGVMDVR 333 (620)
T ss_pred HHHHHHhccCceEEEecccchhceeeHH
Confidence 2 22223344679999999999997654
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-06 Score=75.06 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=46.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHH-hhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVE-QERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e-~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
-..+|.+||+.|.||||++|.|+.....-.. ..+..+.. .. .|+........... ++....+++|||||+
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~-----~~~~~~~~~~~--~~~~i~~~~~~l~e--~~~~~~l~vIDtpGf 92 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDET-----EIDDIRAEGTS--PTLEIKITKAELEE--DGFHLNLTVIDTPGF 92 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCC-----CccCcccccCC--cceEEEeeeeeeec--CCeEEEEEEeccCCc
Confidence 4578999999999999999999886221110 11111111 12 23333344444444 566678999999999
Q ss_pred ccc
Q psy12244 106 VDF 108 (257)
Q Consensus 106 ~~~ 108 (257)
.++
T Consensus 93 GD~ 95 (373)
T COG5019 93 GDF 95 (373)
T ss_pred ccc
Confidence 874
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-07 Score=78.61 Aligned_cols=59 Identities=32% Similarity=0.313 Sum_probs=40.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+++++|.+|+|||||+|+|++...... ...+|.|..... +... ..+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-------------~~~~g~T~~~~~--~~~~-------~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKT-------------GNRPGVTKAQQW--IKLG-------KGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcccc-------------CCCCCeEEEEEE--EEeC-------CcEEEEECCCcC
Confidence 446799999999999999999976433221 124566765432 2221 357899999975
Q ss_pred c
Q psy12244 107 D 107 (257)
Q Consensus 107 ~ 107 (257)
.
T Consensus 178 ~ 178 (287)
T PRK09563 178 W 178 (287)
T ss_pred C
Confidence 3
|
|
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-07 Score=73.97 Aligned_cols=86 Identities=16% Similarity=0.275 Sum_probs=64.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++|.++|.+|+|||++=..+.....+. ..+-.|-|++.....+.|.+. ..+++||+.|++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~-------------D~~rlg~tidveHsh~RflGn-----l~LnlwDcGgqe 64 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIAR-------------DTRRLGATIDVEHSHVRFLGN-----LVLNLWDCGGQE 64 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhh-------------hhhccCCcceeeehhhhhhhh-----heeehhccCCcH
Confidence 34689999999999999877765322111 122356788877777777652 578999999999
Q ss_pred ccHHHHHH-----hhhhcceEEEEEecCc
Q psy12244 107 DFSNEVTR-----SLAACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~~~~~~~~-----~~~~aD~~ilVvd~~~ 130 (257)
.|+++... .++..+++++|+|+..
T Consensus 65 ~fmen~~~~q~d~iF~nV~vli~vFDves 93 (295)
T KOG3886|consen 65 EFMENYLSSQEDNIFRNVQVLIYVFDVES 93 (295)
T ss_pred HHHHHHHhhcchhhheeheeeeeeeeccc
Confidence 88777655 4678899999999987
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-07 Score=83.06 Aligned_cols=61 Identities=64% Similarity=0.925 Sum_probs=53.1
Q ss_pred cchhhhcceeeEeeecccchhhHHHHHHhhCCccc-CCCccccCChhhHhhhCceEeeeeee
Q psy12244 196 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 196 ~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~-~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
++..++|+++++.|++.||+|+.|+++..+|.+.. .-..+++|.+++|+||||||++....
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~ 65 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVR 65 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEE
Confidence 34567899999999999999999999999998753 34488999999999999999998764
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-07 Score=80.60 Aligned_cols=57 Identities=32% Similarity=0.335 Sum_probs=40.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..++.++|.+|+|||||+|+|++...+.+. ..+|+|...+.... . ..+.++||||..
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-------------~~PG~Tk~~q~i~~--~-------~~i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTS-------------NRPGTTKGIQWIKL--D-------DGIYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeC-------------CCCceecceEEEEc--C-------CCeEEecCCCcC
Confidence 356999999999999999999886664432 24577665332222 1 348899999964
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-07 Score=78.06 Aligned_cols=57 Identities=32% Similarity=0.361 Sum_probs=38.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+..+++++|.+|+|||||+|+|+....... ...+|.|.... .+... ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-------------~~~~g~T~~~~--~~~~~-------~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-------------GNRPGVTKGQQ--WIKLS-------DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-------------CCCCCeecceE--EEEeC-------CCEEEEECCCc
Confidence 346799999999999999999975432221 12345565432 22221 25789999998
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.3e-07 Score=72.51 Aligned_cols=90 Identities=20% Similarity=0.157 Sum_probs=51.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+...|+|+|++++|||+|+|+|++...... ..+. ....|...-.....+. .+....+.++||||.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~------~~~~-----~~~~T~gi~~~~~~~~---~~~~~~v~~lDteG~ 70 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFD------VMDT-----SQQTTKGIWMWSVPFK---LGKEHAVLLLDTEGT 70 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeE------ecCC-----CCCCccceEEEecccc---CCCcceEEEEecCCc
Confidence 4567899999999999999999987521110 0000 0111111111111110 113368999999998
Q ss_pred ccc------HHHHHHhhhh--cceEEEEEecC
Q psy12244 106 VDF------SNEVTRSLAA--CQGVVLLIDAN 129 (257)
Q Consensus 106 ~~~------~~~~~~~~~~--aD~~ilVvd~~ 129 (257)
.+. ......++.. +|++|+.++..
T Consensus 71 ~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 71 DGRERGEFEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred CccccCchhhhhHHHHHHHHHhCEEEEeccCc
Confidence 653 2233445555 89888887665
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-07 Score=80.96 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++++|.+|+|||||+|+|+....
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 479999999999999999986443
|
|
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.5e-07 Score=66.00 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=59.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEe-ceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK-AQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.+.-+|++||.-++|||+++.+|++-...+..+. ..|+. .....++.. .+....+.|.||.|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~--------------~pTiEDiY~~svet~---rgarE~l~lyDTaG 69 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL--------------HPTIEDIYVASVETD---RGAREQLRLYDTAG 69 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCcc--------------ccchhhheeEeeecC---CChhheEEEeeccc
Confidence 4556799999999999999999987554433221 11211 112222222 23345788999999
Q ss_pred CcccHHHHH-HhhhhcceEEEEEecCc
Q psy12244 105 HVDFSNEVT-RSLAACQGVVLLIDANQ 130 (257)
Q Consensus 105 ~~~~~~~~~-~~~~~aD~~ilVvd~~~ 130 (257)
...+..+.. -+++-+|+.+||++..+
T Consensus 70 lq~~~~eLprhy~q~aDafVLVYs~~d 96 (198)
T KOG3883|consen 70 LQGGQQELPRHYFQFADAFVLVYSPMD 96 (198)
T ss_pred ccCchhhhhHhHhccCceEEEEecCCC
Confidence 998844444 45678999999999987
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-06 Score=76.36 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=58.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC-ccccCCCcccccchHHHhhhCceEeceeeEEEeecc-----------cCCccEE
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG-TVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI-----------LDGEEYL 96 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~-~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-----------~~~~~~~ 96 (257)
.+++|+|.+|+|||||+|+|+.... ..... +-.|+.+....+.+.+. .......
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y--------------pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~ 68 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP--------------PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTT 68 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC--------------CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCce
Confidence 5799999999999999999976443 22111 11233333433333220 0011246
Q ss_pred EEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 97 LNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 97 ~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+.++|.||... +.......++.+|+++.|+++..
T Consensus 69 i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 69 TEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred EEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 88999999754 44566778899999999999975
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.1e-06 Score=68.09 Aligned_cols=69 Identities=29% Similarity=0.332 Sum_probs=40.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhh-CceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQER-GITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~-g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.||.+||.+|.|||||+|.|......-... +....+.-+ .+.+...+..+.- .+...++++|||||+.|
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~------~~~~~~p~pkT~eik~~thvieE----~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSS------SDNSAEPIPKTTEIKSITHVIEE----KGVKLKLTVIDTPGFGD 116 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccC------CCcccCcccceEEEEeeeeeeee----cceEEEEEEecCCCccc
Confidence 689999999999999999997533211110 111111111 1122222222221 34456899999999877
|
|
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-08 Score=78.70 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=89.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+.++.|+|.-++|||+++.+.+..... ......+..+.....+.|+. .....+.|||.+|+
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs--------------~~yRAtIgvdfalkVl~wdd---~t~vRlqLwdIagQ 85 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFS--------------YHYRATIGVDFALKVLQWDD---KTIVRLQLWDIAGQ 85 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHH--------------HHHHHHHhHHHHHHHhccCh---HHHHHHHHhcchhh
Confidence 34678999999999999999998764321 11111222233333344442 23356789999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCCHHHHHHHHHHHh-C
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNANPEACEEQLQTLF-N 150 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~~~~~~~~~~~~~-~ 150 (257)
++|..++.-+++.+.++.+|+|.+. +|....-..+.-.++.++. .
T Consensus 86 erfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ke 165 (229)
T KOG4423|consen 86 ERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKE 165 (229)
T ss_pred hhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhc
Confidence 9999888889999999999999988 3432221112122333322 1
Q ss_pred CCccceEEecccccccccccccccCCCc
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDSTN 178 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~~~ 178 (257)
.....++++|+|...|+++..+.+.+..
T Consensus 166 ngf~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 166 NGFEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred cCccceeeeccccccChhHHHHHHHHHH
Confidence 2223589999999999998877776443
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.6e-07 Score=75.44 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=40.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|.++|.+|+|||||+|.|+......... ..+.......... ........... ++....+++|||||+.+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~----~~~~~~~~~~~~~--~i~~~~~~l~e--~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDS----SIPPPSASISRTL--EIEERTVELEE--NGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS-------------S------SCE--EEEEEEEEEEE--TCEEEEEEEEEEC-CSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccc----ccccccccccccc--ceeeEEEEecc--CCcceEEEEEeCCCccc
Confidence 4689999999999999999998743322110 0000011112222 23333444444 56678999999999875
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-06 Score=74.58 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=71.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhC-ceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERG-ITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g-~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+.-|+++|++|.|||||+..|+.+-... ....-+| +|+- .++...++|+.||
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~------------ti~~i~GPiTvv------------sgK~RRiTflEcp-- 121 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQ------------TIDEIRGPITVV------------SGKTRRITFLECP-- 121 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHh------------hhhccCCceEEe------------ecceeEEEEEeCh--
Confidence 45567899999999999999987532110 0011111 2221 3455889999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~~~ 153 (257)
+-...++..+..||+++|++|++- +|+.... +....+.+...+ -+.+
T Consensus 122 -~Dl~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqG 200 (1077)
T COG5192 122 -SDLHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQG 200 (1077)
T ss_pred -HHHHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCC
Confidence 334567778889999999999997 6664321 344444444333 2345
Q ss_pred cceEEeccccc
Q psy12244 154 KSVLRIWHRRC 164 (257)
Q Consensus 154 ~~~i~iSa~~g 164 (257)
+.+|.+|....
T Consensus 201 aKlFylsgV~n 211 (1077)
T COG5192 201 AKLFYLSGVEN 211 (1077)
T ss_pred ceEEEeccccc
Confidence 56888887653
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-07 Score=84.52 Aligned_cols=58 Identities=47% Similarity=0.724 Sum_probs=53.9
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+|+++++.||+.||+++.|.++..+|.+++ +|+.+.+|+.++|+.|||||+++.++
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is 66 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAIS 66 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccc
Confidence 45789999999999999999999999998876 78899999999999999999999886
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.1e-07 Score=69.82 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++++++|.+|+|||||+|+|+..
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999753
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.8e-07 Score=78.80 Aligned_cols=57 Identities=40% Similarity=0.555 Sum_probs=50.6
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+++++|||++||+|++.+++|..|.+.. .|+ .|++|..++|++||+||+.+.++|
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f 80 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF 80 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe
Confidence 357899999999999999999999998854 444 789999999999999999998875
|
|
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.3e-07 Score=68.66 Aligned_cols=131 Identities=14% Similarity=0.164 Sum_probs=83.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+++++|..+.||+|++++.+. +.. |.....|+........+.. +....++..|||+|++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~lt--geF--------------e~~y~at~Gv~~~pl~f~t--n~g~irf~~wdtagqE 70 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLT--GEF--------------EKTYPATLGVEVHPLLFDT--NRGQIRFNVWDTAGQE 70 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhc--ccc--------------eecccCcceeEEeeeeeec--ccCcEEEEeeecccce
Confidence 467899999999999999999743 221 2223334444444444443 3335899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCC--H--HHHHHHHHHHhCCCccceEEec
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNAN--P--EACEEQLQTLFNIDKKSVLRIW 160 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~--~--~~~~~~~~~~~~~~~~~~i~iS 160 (257)
.+......++-.+.++++++|... |-+++.. . ......--.+....++.++++|
T Consensus 71 k~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iS 150 (216)
T KOG0096|consen 71 KKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEIS 150 (216)
T ss_pred eecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEee
Confidence 988777777777889999999986 0011100 0 0000000011112234689999
Q ss_pred ccccccccccccccC
Q psy12244 161 HRRCFSCADCHRSLD 175 (257)
Q Consensus 161 a~~g~gi~~l~~~i~ 175 (257)
|++..|.+.-|-++.
T Consensus 151 aksn~NfekPFl~La 165 (216)
T KOG0096|consen 151 AKSNYNFERPFLWLA 165 (216)
T ss_pred cccccccccchHHHh
Confidence 999999998887776
|
|
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-06 Score=71.55 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=61.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc-----------cCCccE
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI-----------LDGEEY 95 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-----------~~~~~~ 95 (257)
..++++|||.+|+||||++|+|+...-...+ -+--|+++..+++...+. ......
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~N--------------fPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa 84 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAAN--------------FPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPA 84 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccC--------------CCcceeccccceeecCchHHHHHHHhcCCcceeee
Confidence 4568999999999999999999764332211 122355555544433210 012346
Q ss_pred EEEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+++.|.+|... +-...++.++.+|+++-||++..
T Consensus 85 ~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 85 FLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 899999999765 44556788999999999999887
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.6e-07 Score=78.61 Aligned_cols=60 Identities=37% Similarity=0.670 Sum_probs=52.4
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeeeC
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
+.+.|.++++.|.+.||+|+.+.++...|.|..+|. ..+.||+++|++|||||.+|+-.|
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF 76 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQF 76 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEe
Confidence 345588999999999999999999999998876665 558999999999999999998654
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.1e-07 Score=73.90 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++++|++|+|||||+|+|+...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 468999999999999999998643
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.1e-07 Score=76.97 Aligned_cols=61 Identities=44% Similarity=0.768 Sum_probs=55.2
Q ss_pred chhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 197 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 197 ~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
++.+.|++.++.|++.||++..++++|..|.+..+|. .++.|++.+|+||||||.++...|
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~f 97 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNF 97 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeec
Confidence 4567899999999999999999999999999988777 779999999999999999987654
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.3e-07 Score=77.77 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++++|++|+|||||+|+|+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 47999999999999999997543
|
|
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.9e-07 Score=78.73 Aligned_cols=58 Identities=52% Similarity=0.787 Sum_probs=53.2
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCcc--cCCCccccCChhhHhhhCceEeeeeeeC
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVL--SSGSSQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~--~~g~~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
.+|+..++.||+.||+|+.|+++.+.|.+. ++|..+..|..+.|++|||||+++.+|+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl 77 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISL 77 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeee
Confidence 368899999999999999999999999886 4677999999999999999999999885
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6e-07 Score=75.16 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.7
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+..+++|++|+|||||+|+|..
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc
Confidence 3678999999999999999964
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.6e-06 Score=70.92 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=79.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCcccc--------C-----CCcccccchHHHhh---hCceEeceeeEEEeec-
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--------S-----GSSQVLDSLQVEQE---RGITVKAQTASLRYTS- 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~--------~-----~~~~~~d~~~~e~~---~g~t~~~~~~~~~~~~- 88 (257)
.+.+.|+|.|.+|+|||||+.+|......-.. + .++..-|+.+..+. +++-+.+....=...+
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 45678999999999999999998643211100 0 34444454443322 1222211111100000
Q ss_pred ---------ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCC
Q psy12244 89 ---------ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNAN 137 (257)
Q Consensus 89 ---------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~ 137 (257)
.|+--.+.+.||.|-|..+-... -...+|.+++|.-+.. .|+.+
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKaD~~~-- 203 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKADRKG-- 203 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhheeeEeccChhh--
Confidence 02233577888888887653322 2345677666653333 33222
Q ss_pred HHHHHHHHHHHhCC---------CccceEEecccccccccccccccCC
Q psy12244 138 PEACEEQLQTLFNI---------DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 ~~~~~~~~~~~~~~---------~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+....+++..+.. -..|++.+||.+|+|+++|++.+..
T Consensus 204 A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~ 251 (323)
T COG1703 204 AEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIED 251 (323)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHH
Confidence 22223333322211 1236899999999999999998874
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.7e-06 Score=76.34 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=78.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|..|+|||||+-+|+...-...-+ .+-.-+++-.. + ........++||+.-.
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP-----------~rl~~i~IPad---v------tPe~vpt~ivD~ss~~ 67 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP-----------RRLPRILIPAD---V------TPENVPTSIVDTSSDS 67 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhcccccc-----------ccCCccccCCc---c------CcCcCceEEEeccccc
Confidence 45679999999999999999997643211000 00111232211 1 1111347799999777
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCCH---HH-HHHHHHHHh
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNANP---EA-CEEQLQTLF 149 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~~---~~-~~~~~~~~~ 149 (257)
+-.......++.||++++|++.++ +|...... +. +.-.+.++-
T Consensus 68 ~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~ 147 (625)
T KOG1707|consen 68 DDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA 147 (625)
T ss_pred chhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhH
Confidence 666666778999999999998887 44432221 11 222222221
Q ss_pred CCCccceEEecccccccccccccccCC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
... -.|++||++-.|+.++|-+-.+
T Consensus 148 EiE--tciecSA~~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 148 EIE--TCIECSALTLANVSELFYYAQK 172 (625)
T ss_pred HHH--HHHhhhhhhhhhhHhhhhhhhh
Confidence 222 2589999999999998866654
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-06 Score=76.49 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=40.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+++++|.+|+|||||+|+|+....... +.......+|.|.+.. .+.+. ..+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~--------~~~~~s~~pgtT~~~~--~~~~~-------~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK--------DVITTSPFPGTTLDLI--EIPLD-------DGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc--------ceeeecCCCCeEeeEE--EEEeC-------CCCEEEECCCCCC
Confidence 4799999999999999999987533110 0111233466676543 22221 1356999999864
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-06 Score=66.22 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...+++++|.+|+|||||+|+|.+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999964
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.3e-07 Score=84.55 Aligned_cols=58 Identities=50% Similarity=0.721 Sum_probs=51.2
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.|+++++||+++||+|+.+++++..|.+.+ .|..+++|+.++|++||+||+++.++
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~ 77 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVS 77 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceE
Confidence 45789999999999999999999999998764 34567899999999999999998764
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-06 Score=76.11 Aligned_cols=61 Identities=25% Similarity=0.346 Sum_probs=38.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
.++.++|.+|+|||||+|+|+...... .+.......+|.|.+.. .+.+.. ...++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~--------~~~~~~s~~pGTT~~~~--~~~l~~-------~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGE--------KDVITTSRFPGTTLDKI--EIPLDD-------GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCc--------cceEEecCCCCccceeE--EEEcCC-------CcEEEECCCcc
Confidence 478999999999999999998643110 01111234566676532 222221 24699999985
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.6e-06 Score=83.77 Aligned_cols=58 Identities=48% Similarity=0.720 Sum_probs=50.6
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.++|+++++||+++||+|+.+++++.+|.+.. .|..+++|..++|++||+||+++.++
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~ 76 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGIS 76 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeE
Confidence 45789999999999999999999999997765 34466799999999999999988765
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-06 Score=73.37 Aligned_cols=113 Identities=22% Similarity=0.234 Sum_probs=70.5
Q ss_pred CCCcc-cHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 103 PGHVD-FSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 103 pG~~~-~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
|||.. ...++...+..+|++++|+|+.. +|+.+. ... +...+.+.....+++
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~--~~~-~~~~~~~~~~~~~vi 81 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADP--AVT-KQWLKYFEEKGIKAL 81 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCH--HHH-HHHHHHHHHcCCeEE
Confidence 78754 56677788899999999999975 665321 111 111112211124689
Q ss_pred EecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 158 RIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
++||+++.|+++|.+.+..... ... ....... . ......+.++|..+.||+++.+++....
T Consensus 82 ~iSa~~~~gi~~L~~~i~~~~~-~~~--~~~~~~~---~-~~~~~~~~~vG~~nvGKSslin~l~~~~ 142 (276)
T TIGR03596 82 AINAKKGKGVKKIIKAAKKLLK-EKN--EKLKAKG---L-KNRPIRAMIVGIPNVGKSTLINRLAGKK 142 (276)
T ss_pred EEECCCcccHHHHHHHHHHHHH-Hhh--hhhhhcc---C-CCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 9999999999998887763211 000 0000000 0 1123458889999999999999997543
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.6e-06 Score=73.65 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=74.6
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCC--HHHHHHHHH---HHhCCCccce
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNAN--PEACEEQLQ---TLFNIDKKSV 156 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~--~~~~~~~~~---~~~~~~~~~~ 156 (257)
++|..........++++++|+|+.+ +|+.... .++..+.++ +.+++....+
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 3455555555566777777777765 7764322 233333332 2234433358
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhC-----CcccC
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTG-----TVLSS 231 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g-----~~~~~ 231 (257)
+++||++|.|++++++.|.... . .+.+.++|..+.||+|+.+.++...+ ...+.
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~~--~-------------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~ 189 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKAR--N-------------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSP 189 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHHh--C-------------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecC
Confidence 9999999999999998886220 0 14688999999999999999988543 12223
Q ss_pred CCccccCChhhHh
Q psy12244 232 GSSQVLDSLQVEQ 244 (257)
Q Consensus 232 g~~~~~d~~~~e~ 244 (257)
.++++++....+.
T Consensus 190 ~pgtT~~~~~~~~ 202 (360)
T TIGR03597 190 FPGTTLDLIEIPL 202 (360)
T ss_pred CCCeEeeEEEEEe
Confidence 3455655544443
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3e-05 Score=66.59 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+++|++|+||||++..|...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34578999999999999999998654
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.8e-06 Score=77.72 Aligned_cols=58 Identities=29% Similarity=0.599 Sum_probs=50.4
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.|+++++||+++||+|+.+++++..|.+.+.|. .++.|+.++|++||+||.++...
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~ 74 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQ 74 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEE
Confidence 45689999999999999999999999998766543 37899999999999999988764
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.2e-06 Score=82.63 Aligned_cols=58 Identities=52% Similarity=0.735 Sum_probs=50.1
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.|+++++||+++||+|+.+++++..|.+.+ .|..+++|+.++|++||+||.++.++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~ 76 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGIS 76 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceE
Confidence 44689999999999999999999999997754 34456799999999999999988654
|
|
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.3e-06 Score=70.06 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=43.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..++.++|..|.|||||+|.|+.....- .. ........... |............ ++....++++||||+.+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~-~~----~~~~~~~~~~~--t~~i~~~~~~iee--~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSG-NR----EVPGASERIKE--TVEIESTKVEIEE--NGVKLNLTVIDTPGFGD 91 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccC-Cc----ccCCcccCccc--cceeeeeeeeecC--CCeEEeeEEeccCCCcc
Confidence 4789999999999999999998752111 00 00111111111 3333333344443 56667899999999987
|
|
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.9e-06 Score=69.03 Aligned_cols=82 Identities=21% Similarity=0.346 Sum_probs=58.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
.++.++|-+.+|||||+..|.+........ .+.|.........|++ .++.+.|.||..+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasy--------------efttl~~vpG~~~y~g------aKiqlldlpgiieg 119 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAY--------------EFTTLTTVPGVIRYKG------AKIQLLDLPGIIEG 119 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccc--------------cceeEEEecceEeccc------cceeeecCcchhcc
Confidence 468999999999999999996644332221 1233333344455665 7899999999754
Q ss_pred ------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 108 ------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 108 ------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
--++.+..++.++++++|+|+..
T Consensus 120 akdgkgrg~qviavartcnli~~vld~~k 148 (358)
T KOG1487|consen 120 AKDGKGRGKQVIAVARTCNLIFIVLDVLK 148 (358)
T ss_pred cccCCCCccEEEEEeecccEEEEEeeccC
Confidence 23445566788999999999987
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.9e-06 Score=71.15 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++++|++|+|||||+|.|+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 579999999999999999997643
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.1e-06 Score=78.66 Aligned_cols=58 Identities=66% Similarity=0.964 Sum_probs=50.4
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCC-CccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-SSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g-~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
...|+++++||+++||+|+.+++++..|.+...+ ..+++|.+++|++||+||+++.++
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~ 63 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVR 63 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEE
Confidence 4578999999999999999999999999876533 378999999999999999986653
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.8e-06 Score=79.59 Aligned_cols=59 Identities=39% Similarity=0.647 Sum_probs=51.4
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeee
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..++|+++++||+++||+|+.+++++..|.+.+.|. .+++|+.++|++||+||+++..+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~ 69 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATT 69 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEE
Confidence 456799999999999999999999999997755433 67999999999999999987665
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.3e-06 Score=66.97 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=70.5
Q ss_pred CCCCc-ccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 102 TPGHV-DFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 102 tpG~~-~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
-|||- +...++...+..||++++|+|+.. +|+... +.. ....+.+.....++
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~--~~~-~~~~~~~~~~~~~v 78 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADP--KKT-KKWLKYFESKGEKV 78 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCCh--HHH-HHHHHHHHhcCCeE
Confidence 36664 466677788899999999999975 555321 111 11212222122358
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhC
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
+++||+++.|+++|.+.+...-. . .. +.... . .......+.++|..+.||+++...+.....
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l~-~-~~-~~~~~-~----~~~~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLLK-D-IE-KLKAK-G----LLPRGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHHH-H-Hh-hhhhc-c----cCCCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 99999999999999887763210 0 00 00000 0 011124678999999999999999986443
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.2e-06 Score=80.13 Aligned_cols=60 Identities=37% Similarity=0.632 Sum_probs=51.5
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+.|+++++||+++||+|+.+++++..|.+.+.|. .+++|+.++|++||+||.++..++
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~ 68 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTC 68 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEE
Confidence 456799999999999999999999999887655432 679999999999999999987653
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.04 E-value=4e-06 Score=69.42 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=38.9
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
.+++++||++|.|++++++.+.. ...+++|..+.||+++.+.++..
T Consensus 98 ~~v~~~SAktg~gi~eLf~~l~~-------------------------~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 98 YQVLMTSSKNQDGLKELIEALQN-------------------------RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CeEEEEecCCchhHHHHHhhhcC-------------------------CEEEEECCCCCCHHHHHHHHhhh
Confidence 56999999999999999886651 23678999999999999999764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.8e-06 Score=74.37 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=40.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..+|++||.+||||||+||+|.+....- ....+|.|--+++..+. -.+-|.||||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-------------VS~TPGkTKHFQTi~ls---------~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-------------VSSTPGKTKHFQTIFLS---------PSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-------------eecCCCCcceeEEEEcC---------CCceecCCCCcc
Confidence 4789999999999999999998755432 23355666544433332 357799999965
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.8e-06 Score=70.99 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++++|++|+|||||+|+|+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999997643
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.6e-06 Score=75.54 Aligned_cols=56 Identities=38% Similarity=0.541 Sum_probs=48.1
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-------ccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..|.+.+ .|. .|++|..++|++||+||..+...
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~ 101 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY 101 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence 367999999999999999999999998764 333 35899999999999999988654
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.9e-05 Score=65.26 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+++.|+++|++|+||||++..|..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4567899999999999999998864
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.8e-06 Score=64.14 Aligned_cols=68 Identities=10% Similarity=0.013 Sum_probs=45.2
Q ss_pred eEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCcc
Q psy12244 156 VLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ 235 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~ 235 (257)
++++||++|.|+++|.+.+.... +.. . . .....+.++|..+.||+|+.++++.........-+++
T Consensus 72 ~~~iSa~~~~~~~~L~~~l~~~~--~~~--~---~--------~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~ 136 (157)
T cd01858 72 AFHASINNPFGKGSLIQLLRQFS--KLH--S---D--------KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGE 136 (157)
T ss_pred EEEeeccccccHHHHHHHHHHHH--hhh--c---c--------ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCe
Confidence 58999999999999888886321 100 0 0 0123577899999999999999987554333333344
Q ss_pred ccC
Q psy12244 236 VLD 238 (257)
Q Consensus 236 ~~d 238 (257)
+.+
T Consensus 137 T~~ 139 (157)
T cd01858 137 TKV 139 (157)
T ss_pred eEe
Confidence 433
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.5e-06 Score=79.14 Aligned_cols=59 Identities=37% Similarity=0.653 Sum_probs=51.4
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeee
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..++|+++++||+++||+|+.+++++..|.+.+.+. .+++|+.+.|++||+||.++..+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~ 69 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATT 69 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEE
Confidence 456799999999999999999999999998755443 48999999999999999987654
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.8e-06 Score=76.20 Aligned_cols=58 Identities=36% Similarity=0.654 Sum_probs=50.1
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.|+++++||+++||+|+.+++++..|.+.+.|. .++.|+.++|++||+||.++...
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~ 73 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQ 73 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEE
Confidence 45689999999999999999999999998866554 24689999999999999998754
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.8e-06 Score=74.83 Aligned_cols=57 Identities=37% Similarity=0.471 Sum_probs=48.4
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccCC------------C-----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG------------S-----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g------------~-----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+++++||+++||+|+.+++++..|.+.+.+ . .+++|..++|++||+||..+...|
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~ 80 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF 80 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe
Confidence 36799999999999999999999999765422 0 468999999999999999987654
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.9e-06 Score=73.05 Aligned_cols=114 Identities=23% Similarity=0.240 Sum_probs=70.4
Q ss_pred CCCCcc-cHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 102 TPGHVD-FSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 102 tpG~~~-~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
-|||.. -..+....+..+|++|+|+|+.. +|+.+. .. .+...+.+.....++
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~--~~-~~~~~~~~~~~~~~v 83 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADP--EV-TKKWIEYFEEQGIKA 83 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCH--HH-HHHHHHHHHHcCCeE
Confidence 378754 45567778899999999999976 555321 11 122222221112468
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++||+++.|+++|.+.+..... .. . ....... .......+.++|..+.||+++.+++....
T Consensus 84 i~vSa~~~~gi~~L~~~l~~~l~-~~-~-~~~~~~~----~~~~~~~~~~~G~pnvGKSsliN~l~~~~ 145 (287)
T PRK09563 84 LAINAKKGQGVKKILKAAKKLLK-EK-N-ERRKAKG----MRPRAIRAMIIGIPNVGKSTLINRLAGKK 145 (287)
T ss_pred EEEECCCcccHHHHHHHHHHHHH-HH-H-hhhhhcc----cCcCceEEEEECCCCCCHHHHHHHHhcCC
Confidence 99999999999998887763211 00 0 0000000 01123468899999999999999997644
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.6e-05 Score=67.30 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++..|+++|.+|+||||++..|..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999998888764
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.2e-06 Score=71.89 Aligned_cols=53 Identities=55% Similarity=0.800 Sum_probs=46.6
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCcccCCC--ccccCChhhHhhhCceEee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--SQVLDSLQVEQERGITVKA 252 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--~~~~d~~~~e~~rg~ti~~ 252 (257)
..|+++++.||+.||+|+.|+++...|+...... .+++|....|+||||||-+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILa 58 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILA 58 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEe
Confidence 4689999999999999999999999998754333 6799999999999999954
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.3e-05 Score=61.62 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=52.4
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS 233 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~ 233 (257)
.+++++||++|.|+++|.+.+...- .... ...... . .......++++|..+.||+++.+.++.........+.
T Consensus 60 ~~ii~vSa~~~~gi~~L~~~i~~~~-~~~~-~~~~~~-~----~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~ 132 (155)
T cd01849 60 TIPFKISATNGQGIEKKESAFTKQT-NSNL-KSYAKD-G----KLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP 132 (155)
T ss_pred ceEEEEeccCCcChhhHHHHHHHHh-HHHH-HHHHhc-c----ccccCcEEEEEccCCCCHHHHHHHHHccccccccCCC
Confidence 4589999999999999998876320 0000 000000 0 0112356889999999999999999876554444555
Q ss_pred ccccCChhhH
Q psy12244 234 SQVLDSLQVE 243 (257)
Q Consensus 234 ~~~~d~~~~e 243 (257)
+++.+.....
T Consensus 133 ~~t~~~~~~~ 142 (155)
T cd01849 133 GTTTSQQEVK 142 (155)
T ss_pred CcccceEEEE
Confidence 6666654433
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.3e-05 Score=67.03 Aligned_cols=65 Identities=25% Similarity=0.244 Sum_probs=42.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+++.++|-||+|||||+|++......... ......++|+|+........... ..+.++||||.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k--------~a~vG~~pGVT~~V~~~iri~~r------p~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKK--------AARVGAEPGVTRRVSERIRISHR------PPVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhcc--------ceeccCCCCceeeehhheEeccC------CceEEecCCCc
Confidence 4578999999999999999998543322211 11123467888876553322222 35889999995
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.3e-05 Score=68.74 Aligned_cols=78 Identities=18% Similarity=0.320 Sum_probs=54.6
Q ss_pred hCCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh-C-
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT-G- 226 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~-g- 226 (257)
++....+++++||++|.|++++++.|.... . .+.+.++|..+.||+|+.++++... |
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~--~-------------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~ 187 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKYR--E-------------------GRDVYVVGVTNVGKSTLINRIIKEITGE 187 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHhc--C-------------------CCeEEEEcCCCCcHHHHHHHHHhhccCc
Confidence 354434689999999999999998886320 0 1357889999999999999998643 1
Q ss_pred ---CcccCCCccccCChhhHhhhC
Q psy12244 227 ---TVLSSGSSQVLDSLQVEQERG 247 (257)
Q Consensus 227 ---~~~~~g~~~~~d~~~~e~~rg 247 (257)
......++++++........|
T Consensus 188 ~~~~~~s~~pGTT~~~~~~~l~~~ 211 (365)
T PRK13796 188 KDVITTSRFPGTTLDKIEIPLDDG 211 (365)
T ss_pred cceEEecCCCCccceeEEEEcCCC
Confidence 123455677777665544444
|
|
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.5e-06 Score=74.69 Aligned_cols=62 Identities=40% Similarity=0.754 Sum_probs=54.8
Q ss_pred cchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 196 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 196 ~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
.+..+.|++.+..|+++||+++.+++++..|.+...+. ++++|+++.|++|||||.++.+++
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~ 99 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYF 99 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeee
Confidence 44567899999999999999999999999998766544 779999999999999999998764
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.6e-05 Score=66.64 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
++..|+++|.+|+||||++..|..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0003 Score=60.55 Aligned_cols=69 Identities=7% Similarity=0.210 Sum_probs=50.1
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCccCCCC------CCHHHHHHHHHHHhC---CCccceEEecccc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKN------ANPEACEEQLQTLFN---IDKKSVLRIWHRR 163 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~~D~~~------~~~~~~~~~~~~~~~---~~~~~~i~iSa~~ 163 (257)
..+.+||++|+....+.|...+..++++++|+|.++-|..- ..+.+.++.+...+. +...|++.+-.|.
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 67889999999999999999999999999999999855421 124555555555443 2345666665554
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.6e-05 Score=62.32 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
|+.|+++|++|+||||.+-+|....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4678999999999999999986544
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.7e-05 Score=64.20 Aligned_cols=103 Identities=19% Similarity=0.317 Sum_probs=58.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhc--CccccC-----CCcccccchHHHhhhCceEeceeeEEEeec--------------
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT--GTVLSS-----GSSQVLDSLQVEQERGITVKAQTASLRYTS-------------- 88 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~--~~~~~~-----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-------------- 88 (257)
-|.++|+-..||||+++.|+... +.-... .+..++....++.-+|.+.-.... ..+.+
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~-~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAK-KPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCC-CchhhhhhhHHHHHHHHHH
Confidence 48999999999999999997522 111111 111112222222222322211100 00100
Q ss_pred --ccCCccEEEEEeCCCCCc-----------ccHHHHHHhhhhcceEEEEEecCccCC
Q psy12244 89 --ILDGEEYLLNLIDTPGHV-----------DFSNEVTRSLAACQGVVLLIDANQVDL 133 (257)
Q Consensus 89 --~~~~~~~~~~liDtpG~~-----------~~~~~~~~~~~~aD~~ilVvd~~~~D~ 133 (257)
.+...-.++++|||||.- +|.....-.+..+|.++|++|+...|.
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI 196 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDI 196 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccc
Confidence 001112479999999963 366666667788999999999998555
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.4e-05 Score=71.60 Aligned_cols=56 Identities=45% Similarity=0.669 Sum_probs=47.9
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC------------CC-----ccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GS-----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g~-----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..|.+... |. .+++|..++|++||+|+..+...
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~ 78 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK 78 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE
Confidence 3679999999999999999999999987542 33 46899999999999999987654
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.1e-05 Score=59.47 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=41.0
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHH
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
.+++++||++|.|+++|++.+.... + . . .....+.++|..+.||+++..++..
T Consensus 71 ~~~~~iSa~~~~gi~~L~~~l~~~~-----~--~--~--------~~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 71 IPVVYVSAKERLGTKILRRTIKELA-----K--I--D--------GKEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CcEEEEEccccccHHHHHHHHHHHH-----h--h--c--------CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998887321 1 0 0 1124578999999999999999975
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00031 Score=61.09 Aligned_cols=68 Identities=7% Similarity=0.223 Sum_probs=49.4
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCccCCC------CCCHHHHHHHHHHHhC---CCccceEEeccc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLK------NANPEACEEQLQTLFN---IDKKSVLRIWHR 162 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~~D~~------~~~~~~~~~~~~~~~~---~~~~~~i~iSa~ 162 (257)
..+.+||.+|+..+++.|...+..++++++|+|.++-|.. .....+..+.+...++ +...|++.+-.|
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK 260 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNK 260 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEec
Confidence 6788999999999999999999999999999999985432 1124555555655553 233466555544
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00021 Score=65.58 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=59.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------CC---cccccchHHH------hhhC--c-----eE
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------GS---SQVLDSLQVE------QERG--I-----TV 77 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------~~---~~~~d~~~~e------~~~g--~-----t~ 77 (257)
...+|+|.|++++||||++|+++......... ++ ....+...+. .+.+ . .-
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 45689999999999999999999865544322 00 0001110000 0000 0 11
Q ss_pred eceeeEEEeecc-cCCccEEEEEeCCCCCcc---cHHHHHHhhhhcceEEEEEecCc
Q psy12244 78 KAQTASLRYTSI-LDGEEYLLNLIDTPGHVD---FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~---~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
......+.|+.. |.--.-.+.++|.||..- +...+......+|++|||+.+..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn 244 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN 244 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc
Confidence 122233444431 001112688999999753 44455556678999999999987
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.3e-05 Score=70.53 Aligned_cols=56 Identities=39% Similarity=0.562 Sum_probs=47.5
Q ss_pred cceeeEeeecccchhhHHHHHHhhCCcccC------------CC-----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 202 RNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GS-----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 202 ~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g~-----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
.+++++||+++||+|+.+++++..|.+... |. .+++|..++|++||+||..+..+|
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~ 80 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence 579999999999999999999999877642 22 257999999999999999987653
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=7e-05 Score=65.14 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=38.6
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+++++||++|.|+++|++.+.. ..++++|..+.||+++.+.++...
T Consensus 150 ~~v~~iSA~tg~GI~eL~~~L~~-------------------------ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 150 YQPLFISVETGIGLEALLEQLRN-------------------------KITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred CeEEEEEcCCCCCHHHHhhhhcc-------------------------ceEEEEeCCCCCHHHHHHHHcCcc
Confidence 35899999999999998877751 125789999999999999997543
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=54.39 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.7
Q ss_pred ceeeEeeecccchhhHHHHHHhh
Q psy12244 203 NFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 203 ~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+.++|..+.||+++.+++....
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~ 107 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKK 107 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999997543
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00021 Score=55.07 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.8
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++++|..|+|||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999999865
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.3e-05 Score=71.74 Aligned_cols=57 Identities=51% Similarity=0.807 Sum_probs=49.4
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCcccCCC--ccccCChhhHhhhCceEeeeeee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
+.|+++++||+++||+++.+++++..|.+.+.+. .+++|+.++|++||+||.+..++
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~ 62 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTA 62 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEE
Confidence 4689999999999999999999998887755432 58999999999999999887654
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.8e-05 Score=63.97 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=38.1
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
.+++++||++|.|+++|++.+.. ..++++|..+.||+|+.+.++..
T Consensus 142 ~~v~~vSA~~g~gi~~L~~~l~g-------------------------k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 142 YDVLELSAKEGEGLDELKPLLAG-------------------------KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred CeEEEEeCCCCccHHHHHhhccC-------------------------ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999998876531 23778999999999999998754
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.3e-05 Score=65.82 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=39.1
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+++++||++|.|+++|++.|.. .-.+++|..+.||+|+.+.++...
T Consensus 183 ~~v~~vSA~tg~GideL~~~L~~-------------------------ki~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 183 YRVLMVSSHTGEGLEELEAALTG-------------------------RISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CeEEEEeCCCCcCHHHHHHHHhh-------------------------CCEEEECCCCCCHHHHHHHhcccc
Confidence 47999999999999999887651 126789999999999999997543
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.4e-05 Score=67.28 Aligned_cols=58 Identities=38% Similarity=0.538 Sum_probs=49.9
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..-..++.|||++||+|+..++++.-|.+.+ .|+ .|++|.-++|++||+||......|
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 3467889999999999999999999998753 344 889999999999999999887654
|
|
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.2e-05 Score=65.36 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=40.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+++|+|-+|+||||+||+|.......... .+|+|.... .+... ..+.|+|.||..
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-------------~pGvT~smq--eV~Ld-------k~i~llDsPgiv 308 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-------------VPGVTRSMQ--EVKLD-------KKIRLLDSPGIV 308 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCC-------------Cccchhhhh--heecc-------CCceeccCCcee
Confidence 45679999999999999999998766543322 345554321 22222 478899999975
Q ss_pred c
Q psy12244 107 D 107 (257)
Q Consensus 107 ~ 107 (257)
-
T Consensus 309 ~ 309 (435)
T KOG2484|consen 309 P 309 (435)
T ss_pred e
Confidence 3
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00038 Score=60.99 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+++.|+++|++|+||||++..|..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457899999999999999999964
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.6e-05 Score=72.08 Aligned_cols=57 Identities=49% Similarity=0.704 Sum_probs=48.9
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..|+++++||+++||+++.+++++..|.+.+ .|..+.+|+.++|++||+||.++..+
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~ 76 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVS 76 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccce
Confidence 4689999999999999999999999987754 34456799999999999999987543
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=6.1e-05 Score=70.88 Aligned_cols=55 Identities=35% Similarity=0.497 Sum_probs=46.6
Q ss_pred cceeeEeeecccchhhHHHHHHhhCCccc------------CCC-------ccccCChhhHhhhCceEeeeeee
Q psy12244 202 RNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 202 ~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+++++||+++||+|+.+++++..|.+.. .|. .+.+|..++|++||+||..+...
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 45899999999999999999999998762 333 36899999999999999987654
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=6.9e-05 Score=71.21 Aligned_cols=59 Identities=44% Similarity=0.715 Sum_probs=50.5
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeee
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+.++++++||+++||+++.+++++..|.+.+.+. .+..|+.+.|++||+||.++..+
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~ 67 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATS 67 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEE
Confidence 445799999999999999999999999887765543 46899999999999999987654
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00011 Score=64.11 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...++++|++|+||||++..|...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999754
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00013 Score=62.01 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=38.7
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+++++||++|.|+++|++.|.. ..+++.|+.+.||+|+.+.++...
T Consensus 139 ~~v~~vSA~~g~gi~~L~~~L~~-------------------------k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 139 YPVLAVSAKTGEGLDELREYLKG-------------------------KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred CeEEEEECCCCccHHHHHhhhcc-------------------------ceEEEECCCCCCHHHHHHHHhchh
Confidence 46899999999999998776551 247889999999999999987643
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=97.50 E-value=9.8e-05 Score=66.24 Aligned_cols=56 Identities=39% Similarity=0.564 Sum_probs=47.2
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..|.+.. .|. .+++|..++|++||+|+..+...
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~ 79 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK 79 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE
Confidence 367999999999999999999999887652 122 46899999999999999987654
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..+|.|.|+||+|||||+.++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 46899999999999999999864
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00045 Score=62.26 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred eeeEEEEecCCCChHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~ 49 (257)
.++|.|+|..++|||||+.+|.
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~ 46 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQ 46 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhh
Confidence 4689999999999999999984
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00061 Score=53.14 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+++.++|+|.+|+|||||+++|+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHH
Confidence 3556799999999999999999975
|
|
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=8.7e-05 Score=64.02 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=23.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.+...|+++|.+|+||||++|.|.....+
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVC 333 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVC 333 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccc
Confidence 34567999999999999999999665443
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00074 Score=52.70 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=18.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|++|+||||+...+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888764
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00015 Score=64.68 Aligned_cols=56 Identities=30% Similarity=0.396 Sum_probs=45.7
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC--CCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~--g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.++++...|.+... .....+|..++|++||+|+.++...
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~ 69 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVE 69 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEE
Confidence 3679999999999999999999988765321 1134789999999999999987654
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00017 Score=65.30 Aligned_cols=56 Identities=34% Similarity=0.453 Sum_probs=46.1
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccCC--CccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG--SSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g--~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..|.+.... ....+|..++|++||+||..+...
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~ 138 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVE 138 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEE
Confidence 46799999999999999999999888664321 235799999999999999887644
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0014 Score=58.26 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+++|+.|+||||++..|...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988754
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00031 Score=62.85 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++..|+++|.+|+||||++..|..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4567899999999999999998864
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00035 Score=62.05 Aligned_cols=56 Identities=29% Similarity=0.414 Sum_probs=42.8
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcc--cCCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVL--SSGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~--~~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++...... .....+.+|..++|++||+|++++...
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~ 69 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVE 69 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEE
Confidence 46799999999999999999988532211 111123789999999999999987553
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00027 Score=62.70 Aligned_cols=56 Identities=29% Similarity=0.440 Sum_probs=42.5
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCc--ccCCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTV--LSSGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~--~~~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.++++...... .+....+.+|..++|++||+|+..+...
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~ 69 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVE 69 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEE
Confidence 4679999999999999999997542211 0111235799999999999999987654
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0003 Score=62.46 Aligned_cols=56 Identities=30% Similarity=0.430 Sum_probs=42.7
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.++++...+..-+ ....+.+|..++|++||+|++.+...
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~ 69 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVE 69 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeE
Confidence 478999999999999999999864432110 11123699999999999999987654
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00027 Score=61.84 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..++++|.+|+|||||+|.|++...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4689999999999999999987544
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0028 Score=55.46 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.+.|++||++||||||.+-.|..+-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 36789999999999999998886543
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0031 Score=55.85 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...++++|++|+||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999975
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00037 Score=62.75 Aligned_cols=55 Identities=31% Similarity=0.467 Sum_probs=41.4
Q ss_pred hcceeeEeeecccchhhHHHHHHhh---CCcccCCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMT---GTVLSSGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~---g~~~~~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++.... |.. .......+|..++|++||+||+.+...
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~-~~~~~~~~D~~~~E~~rGiTi~~~~~~ 118 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKA-KAVAFDEIDKAPEEKARGITIATAHVE 118 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcc-cceeeccccCChhHhhcCceeeeeEEE
Confidence 4679999999999999999996432 211 111122699999999999999987654
|
|
| >KOG1534|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0012 Score=52.50 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=22.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCcccc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS 57 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~ 57 (257)
.+.++|+.|+||||..+.+........+
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gR 32 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGR 32 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCc
Confidence 4678999999999999999765544433
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0003 Score=61.32 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=21.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+...++++|+.|+||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0005 Score=61.07 Aligned_cols=56 Identities=29% Similarity=0.423 Sum_probs=42.7
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc--CCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~--~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..+.... ....+.+|..++|++||+|++.+...
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~ 69 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVE 69 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeE
Confidence 367999999999999999999875432111 11134799999999999999986543
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.003 Score=53.00 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+..+++++|++|+||||++..|...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999988653
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0015 Score=49.82 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=25.5
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecC
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
.+.+.||||||... .....+..||.+++|....
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPG 123 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCC
Confidence 47899999999753 3345788899999888655
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0037 Score=44.28 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=45.5
Q ss_pred EEEEe-cCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 31 FSIIA-HVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 31 i~ivG-~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
|+++| ..|+||||+.-.|...... .|. ....+.. + ..+.+.++|+|+....
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~------------------~~~----~vl~~d~----d-~~~d~viiD~p~~~~~- 53 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR------------------RGK----RVLLIDL----D-PQYDYIIIDTPPSLGL- 53 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh------------------CCC----cEEEEeC----C-CCCCEEEEeCcCCCCH-
Confidence 56777 6799999998887543211 111 0111211 1 1167889999997643
Q ss_pred HHHHHhhhhcceEEEEEecCc
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.....+..+|.++++++.+.
T Consensus 54 -~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 54 -LTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred -HHHHHHHHCCEEEEeccCCH
Confidence 33477788999999987764
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.002 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.++++|..|+|||||+++|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=59.09 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=21.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++..++++|++|+||||++..|...
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34678999999999999998887643
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0014 Score=58.61 Aligned_cols=25 Identities=20% Similarity=0.229 Sum_probs=20.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++..|.++|.+|+||||++..|..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3467899999999999998877754
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0015 Score=57.12 Aligned_cols=68 Identities=21% Similarity=0.153 Sum_probs=48.4
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeee
Q psy12244 131 VDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHV 210 (257)
Q Consensus 131 ~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v 210 (257)
+|+.+. .+...+.+... ....++|++|+++|.|+++|.+++.. ...++++|..
T Consensus 152 ~DL~~~-~~~~~~~~~~~--~~g~~Vi~vSa~~g~gl~~L~~~L~~------------------------g~~~~lvG~s 204 (356)
T PRK01889 152 ADLCED-AEEKIAEVEAL--APGVPVLAVSALDGEGLDVLAAWLSG------------------------GKTVALLGSS 204 (356)
T ss_pred hhcCCC-HHHHHHHHHHh--CCCCcEEEEECCCCccHHHHHHHhhc------------------------CCEEEEECCC
Confidence 777542 23334444443 22457999999999999998876640 1357899999
Q ss_pred cccchhhHHHHHHhh
Q psy12244 211 DHGKSTLADRLLEMT 225 (257)
Q Consensus 211 ~~Gk~~~~~~i~~~~ 225 (257)
+.||+++.+.+....
T Consensus 205 gvGKStLin~L~g~~ 219 (356)
T PRK01889 205 GVGKSTLVNALLGEE 219 (356)
T ss_pred CccHHHHHHHHHHhc
Confidence 999999999987644
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0011 Score=48.33 Aligned_cols=24 Identities=42% Similarity=0.397 Sum_probs=20.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.|+|.|.+||||||+.+.|....+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999976533
|
... |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0011 Score=42.40 Aligned_cols=21 Identities=33% Similarity=0.264 Sum_probs=18.8
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
..+|.|+.++|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999853
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0047 Score=56.26 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+-..|+|+|++|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0012 Score=51.48 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++|.|+|++|+|||||...|....+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999776554
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00086 Score=55.96 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=41.7
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCc--ccCCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTV--LSSGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~--~~~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..|+..+||++.||+|+..+|....... ..+..-.-.|..++|++|||||+.++..
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahve 69 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVE 69 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeE
Confidence 4688999999999999999985433211 1122233578899999999999998764
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.013 Score=49.63 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=26.1
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..+..+++++.|+|++|.|||+++++|....
T Consensus 55 ~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 55 YPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 3455678999999999999999999997643
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.001 Score=53.98 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=18.2
Q ss_pred eEEEEecCCCChHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~ 49 (257)
-|+|+|++|||||||+|.+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999883
|
|
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0023 Score=54.22 Aligned_cols=38 Identities=3% Similarity=-0.124 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 138 PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++.+...+++++-..+...|.+|+|...|++.|..+|.
T Consensus 249 fdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 249 FDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred HHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 34445556665422234589999999999999988886
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0017 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
|
|
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0075 Score=52.10 Aligned_cols=39 Identities=10% Similarity=0.215 Sum_probs=35.5
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCccCC
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDL 133 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~~D~ 133 (257)
..+-++|++||..-++.|.-.+..++++|||++.++-|.
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq 233 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQ 233 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhh
Confidence 688899999999999999999999999999999998555
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.014 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
++..|+++|++|+||||.+..|...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988653
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0054 Score=52.30 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=23.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++..|.++|--|+||||-+..|.+..
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHH
Confidence 468889999999999999999987543
|
|
| >KOG3859|consensus | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0018 Score=53.60 Aligned_cols=67 Identities=24% Similarity=0.236 Sum_probs=39.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..||.-+|.+|-|||||++.|.+..-..... ... .+++ ......+.... .+...+++++||.|+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~-----~H~-----~~~V--~L~~~TyelqE--snvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPS-----THT-----LPNV--KLQANTYELQE--SNVRLKLTIVDTVGFG 106 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCC-----ccC-----CCCc--eeecchhhhhh--cCeeEEEEEEeecccc
Confidence 35799999999999999999997643211100 000 1111 11112222222 3444689999999986
Q ss_pred c
Q psy12244 107 D 107 (257)
Q Consensus 107 ~ 107 (257)
+
T Consensus 107 D 107 (406)
T KOG3859|consen 107 D 107 (406)
T ss_pred c
Confidence 6
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0041 Score=59.08 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...|+++|+.|+||||++..|...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 457899999999999999998753
|
|
| >KOG1533|consensus | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0049 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=19.3
Q ss_pred EEEEecCCCChHHHHHHHHHhcCcc
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTV 55 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~ 55 (257)
.+|+|+||+||||-.+-+...-..+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~ 29 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAI 29 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHh
Confidence 5799999999999988765443333
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0015 Score=52.33 Aligned_cols=21 Identities=38% Similarity=0.309 Sum_probs=18.9
Q ss_pred eeEEEEecCCCChHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~ 49 (257)
-.++|+|++|+|||||+.+|-
T Consensus 29 evv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999984
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.034 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+++..++.|--|+|||||+|+|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4567889999999999999999864
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0019 Score=50.49 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+|+|+|.+|+|||||...|....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986543
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0051 Score=55.09 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=19.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...++++|++|+||||++..|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988854
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0026 Score=51.20 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
++...|+|+|++|+|||||+++|...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999764
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0024 Score=47.91 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEecCCCChHHHHHHHHHhcC
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
|.++|++|+|||||+..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999976554
|
... |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0016 Score=53.31 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=18.9
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
-|+|+|++|+|||||++.+.+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999854
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0025 Score=41.72 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEEecCCCChHHHHHHHHHh
Q psy12244 31 FSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~ 51 (257)
|++.|.+|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999653
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0024 Score=54.41 Aligned_cols=55 Identities=31% Similarity=0.413 Sum_probs=40.7
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCC--cccCCCccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGT--VLSSGSSQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~--~~~~g~~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..++.-+|||+.||+|+..+|-..-.. .....+-.-.|..++|..|||||+.++.
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHv 110 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHV 110 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeee
Confidence 357888999999999999987442221 1122234457888999999999999875
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0028 Score=49.80 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++|+|+|++|+||||+...|....+.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999876443
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.014 Score=40.14 Aligned_cols=69 Identities=26% Similarity=0.282 Sum_probs=45.8
Q ss_pred EEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSN 110 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 110 (257)
+++.|..|+||||+...|..... +.|... ...+ .+.++|+|+......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~------------------~~g~~v------~~~~--------d~iivD~~~~~~~~~ 49 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA------------------KRGKRV------LLID--------DYVLIDTPPGLGLLV 49 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH------------------HCCCeE------EEEC--------CEEEEeCCCCccchh
Confidence 67889999999999999865321 111111 1111 477999999865432
Q ss_pred H-HHHhhhhcceEEEEEecCcc
Q psy12244 111 E-VTRSLAACQGVVLLIDANQV 131 (257)
Q Consensus 111 ~-~~~~~~~aD~~ilVvd~~~~ 131 (257)
. .......+|.++++++....
T Consensus 50 ~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 50 LLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred hhhhhhhhhCCEEEEecCCchh
Confidence 2 24566788999999877653
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG4181|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.016 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-..|+++|.-|+|||||++.|..
T Consensus 188 f~VIgvlG~QgsGKStllslLaa 210 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAA 210 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhc
Confidence 45689999999999999998854
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0034 Score=50.54 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+|.|.+|+|||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0029 Score=49.41 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.5
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-.++|+|++|+|||||+|.+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 3589999999999999998855
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0042 Score=53.57 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=80.1
Q ss_pred EEEeCCCCCcc-cHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 97 LNLIDTPGHVD-FSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 97 ~~liDtpG~~~-~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
..+-+-|||.. +.......+..+|+++-|+|+.. +|+.+. ...++-.+.+..
T Consensus 12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~---~~~~~W~~~~~~ 88 (322)
T COG1161 12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPK---EVTKKWKKYFKK 88 (322)
T ss_pred ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCH---HHHHHHHHHHHh
Confidence 34556699865 67777788889999999999998 555332 222222333322
Q ss_pred C-ccceEEecccccccccccccccCCC--cccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCc
Q psy12244 152 D-KKSVLRIWHRRCFSCADCHRSLDST--NLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV 228 (257)
Q Consensus 152 ~-~~~~i~iSa~~g~gi~~l~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~ 228 (257)
. ....+.++++.+.+...+..++..+ ...+.+. +.. . ......+.++|..+.||++++++++......
T Consensus 89 ~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~-~~~-~-------~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~ 159 (322)
T COG1161 89 EEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLK-KKG-L-------LKRKIRVGVVGYPNVGKSTLINRLLGKKVAK 159 (322)
T ss_pred cCCCccEEEEeecccCccchHHHHHHHHHHHHHHHh-hcC-C-------CccceEEEEEcCCCCcHHHHHHHHhccccee
Confidence 1 3446889999999888776433321 0000000 000 0 0112447889999999999999999887755
Q ss_pred ccCCCccccC
Q psy12244 229 LSSGSSQVLD 238 (257)
Q Consensus 229 ~~~g~~~~~d 238 (257)
...-++++.+
T Consensus 160 ~s~~PG~Tk~ 169 (322)
T COG1161 160 TSNRPGTTKG 169 (322)
T ss_pred eCCCCceecc
Confidence 5444455444
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.003 Score=54.05 Aligned_cols=56 Identities=36% Similarity=0.519 Sum_probs=44.6
Q ss_pred cceeeEeeecccchhhHHHHHHhhCCccc------------CCC-------ccccCChhhHhhhCceEeeeeeeC
Q psy12244 202 RNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-------SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 202 ~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-------~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
-++.-+|+|+.||+|++.++++....+.. .|. .-.+|.++.|+|.||||..+.-+|
T Consensus 7 LRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 7 LRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred eeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence 46778999999999999999998765531 111 336899999999999999887654
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0035 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++++|+.|+|||||++.++..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 46899999999999999988653
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0027 Score=47.29 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEEccCCCccccceeeecc
Confidence 589999999999999999854
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0041 Score=48.95 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+++|.+||||||+.+.|....+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999976544
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0033 Score=47.19 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHHHHHHh
Q psy12244 31 FSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~ 51 (257)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999764
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0045 Score=50.34 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=49.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|.++|.--+||||+-....++.... +.+-.|....+|.+- ..+.-..+.+||.||+.+|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn---------eTlflESTski~~d~----------is~sfinf~v~dfPGQ~~~ 88 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN---------ETLFLESTSKITRDH----------ISNSFINFQVWDFPGQMDF 88 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC---------ceeEeeccCcccHhh----------hhhhhcceEEeecCCcccc
Confidence 349999999999999887654422110 000011111111110 0112257889999999875
Q ss_pred HHH---HHHhhhhcceEEEEEecCc
Q psy12244 109 SNE---VTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 109 ~~~---~~~~~~~aD~~ilVvd~~~ 130 (257)
..- ...-++.+-+.++|+|+.+
T Consensus 89 Fd~s~D~e~iF~~~gALifvIDaQd 113 (347)
T KOG3887|consen 89 FDPSFDYEMIFRGVGALIFVIDAQD 113 (347)
T ss_pred CCCccCHHHHHhccCeEEEEEechH
Confidence 432 3344677888999999998
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0036 Score=44.74 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.9
Q ss_pred eeEEEEecCCCChHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~ 49 (257)
..++++|++|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999985
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0045 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.+|+|+|.+|+|||||..+|....+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999976554
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0039 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
-.+++|+|++|+|||||++.|+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999764
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.003 Score=57.05 Aligned_cols=45 Identities=36% Similarity=0.415 Sum_probs=36.8
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccCCCccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..++++.|||+.||+|+..++... ..|..++|.+||+||+...++
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~-----------~~~r~~~E~~rGiTi~lGfa~ 78 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGV-----------KTVRFKREKVRNITIKLGYAN 78 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCC-----------CcccchhhHHhCCchhccccc
Confidence 467889999999999999998621 236678999999999876653
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0054 Score=44.87 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHHHHh
Q psy12244 31 FSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~ 51 (257)
|+|.|.+|||||||.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999765
|
... |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0054 Score=48.60 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+++-|+|+|++|+|||||+++|+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45669999999999999999997643
|
|
| >PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.015 Score=51.72 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.|+|+|..|+|||||+.+|+.
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~ 23 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVA 23 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.003 Score=48.78 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=17.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+|+|+|.+++|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999765
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.005 Score=48.22 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++|+|++|||||||+++|....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999987643
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0059 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
++.++|+|..|+|||||+++|+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 35689999999999999999965
|
|
| >KOG0447|consensus | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.027 Score=51.05 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=60.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC------------------CCccc------ccchHH------------
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------------GSSQV------LDSLQV------------ 69 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~------------------~~~~~------~d~~~~------------ 69 (257)
...++|++||.-.+||||.+..+.+...-.... ..+.+ .|-.++
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 457789999999999999999886533222111 01111 111111
Q ss_pred ----HhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-------------cHHHHHHhhhhcceEEEEEe
Q psy12244 70 ----EQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-------------FSNEVTRSLAACQGVVLLID 127 (257)
Q Consensus 70 ----e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvd 127 (257)
....|-|+...+..+..++ .+ -..+.++|.||... ...+...++.+++++|+++.
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKG--Pg-LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ 457 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKG--PG-LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ 457 (980)
T ss_pred HHHhcccCCcccccceEEEeecC--CC-cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec
Confidence 1123556655555555554 22 24788999999643 44455667788999999973
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0061 Score=47.51 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.+|+|+|++|+|||||...|....+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 47999999999999999999776553
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0057 Score=49.55 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++|+|+|.+|+||||+...|....+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36999999999999999999776553
|
|
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0059 Score=49.19 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.+-|+|+|++|+|||||+++|..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 456688999999999999999964
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.006 Score=47.70 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..|+|.|.+|+|||||.++|....
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 568999999999999999997644
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.039 Score=48.76 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=22.4
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++-.|.++|--|+||||....|..+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~ 123 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKY 123 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHH
Confidence 345678999999999999999988653
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.005 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.8
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0057 Score=44.87 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..+.++|++|+||||++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 468999999999999999997643
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0016 Score=56.52 Aligned_cols=59 Identities=36% Similarity=0.369 Sum_probs=49.9
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCccc-----------------CCCccccCChhhHhhhCceEeeeeeeC
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-----------------SGSSQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~-----------------~g~~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
.+..+++++||++.||+|++..|++..|.+.. ..-.|.+|+.++|+++|-|++...++|
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 34578999999999999999999998887642 112789999999999999999988775
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0047 Score=50.13 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=18.7
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
-|+|+|++|+|||||+..|-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 389999999999999999843
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0051 Score=53.02 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=18.6
Q ss_pred EEEEecCCCChHHHHHHHHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~ 50 (257)
++++|++|+|||||++.+.+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999965
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0055 Score=48.89 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHHHHh
Q psy12244 31 FSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~ 51 (257)
|+|+|++|+|||||.+.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999664
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.028 Score=43.66 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=26.0
Q ss_pred EEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.+||||+.... .....+..+|.+|+|+++..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~ 96 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI 96 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc
Confidence 6889999986543 35566789999999998775
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0065 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=16.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...+.+.|.|++|+|||+|++++..
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999865
|
|
| >PLN02459 probable adenylate kinase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.01 Score=49.37 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 12 KPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++..++.+.......++.+|+++|++|+||||+...|....+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~ 55 (261)
T PLN02459 13 ADDLASACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGV 55 (261)
T ss_pred hhhccccccCCccccCccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444444444445567999999999999999999776554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 257 | ||||
| 3deg_C | 545 | Complex Of Elongating Escherichia Coli 70s Ribosome | 3e-33 | ||
| 3deg_C | 545 | Complex Of Elongating Escherichia Coli 70s Ribosome | 1e-13 | ||
| 3cb4_D | 599 | The Crystal Structure Of Lepa Length = 599 | 4e-33 | ||
| 3cb4_D | 599 | The Crystal Structure Of Lepa Length = 599 | 1e-13 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 6e-32 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 2e-14 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 2e-31 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 4e-14 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 9e-21 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 6e-10 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 9e-21 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 6e-10 | ||
| 2rdo_7 | 704 | 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = | 1e-16 | ||
| 2rdo_7 | 704 | 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = | 5e-07 | ||
| 3j0e_H | 702 | Models For The T. Thermophilus Ribosome Recycling F | 1e-16 | ||
| 3j0e_H | 702 | Models For The T. Thermophilus Ribosome Recycling F | 5e-07 | ||
| 3izp_E | 688 | Conformation Of Ef-G During Translocation Length = | 3e-16 | ||
| 3izp_E | 688 | Conformation Of Ef-G During Translocation Length = | 5e-06 | ||
| 1fnm_A | 691 | Structure Of Thermus Thermophilus Ef-G H573a Length | 3e-16 | ||
| 1fnm_A | 691 | Structure Of Thermus Thermophilus Ef-G H573a Length | 5e-06 | ||
| 1efg_A | 691 | The Crystal Structure Of Elongation Factor G Comple | 4e-16 | ||
| 1efg_A | 691 | The Crystal Structure Of Elongation Factor G Comple | 5e-06 | ||
| 1ktv_A | 691 | Crystal Structure Of Elongation Factor G Dimer With | 4e-16 | ||
| 1ktv_A | 691 | Crystal Structure Of Elongation Factor G Dimer With | 5e-06 | ||
| 2bm1_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 6e-16 | ||
| 2bm1_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 9e-06 | ||
| 2bv3_A | 691 | Crystal Structure Of A Mutant Elongation Factor G T | 1e-15 | ||
| 2bv3_A | 691 | Crystal Structure Of A Mutant Elongation Factor G T | 5e-06 | ||
| 2j7k_A | 691 | Crystal Structure Of The T84a Mutant Ef-G:gdpcp Com | 1e-15 | ||
| 2j7k_A | 691 | Crystal Structure Of The T84a Mutant Ef-G:gdpcp Com | 5e-06 | ||
| 2bm0_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 6e-15 | ||
| 2bm0_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 2e-05 | ||
| 4fn5_A | 709 | Elongation Factor G 1 (Pseudomonas Aeruginosa) In C | 1e-14 | ||
| 4fn5_A | 709 | Elongation Factor G 1 (Pseudomonas Aeruginosa) In C | 2e-05 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 2e-14 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 5e-04 | ||
| 3zz0_A | 693 | Crystal Structure Of Ribosomal Elongation Factor (E | 3e-14 | ||
| 3zz0_A | 693 | Crystal Structure Of Ribosomal Elongation Factor (E | 2e-04 | ||
| 2xex_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 7e-14 | ||
| 2xex_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 3e-04 | ||
| 3tr5_A | 528 | Structure Of A Peptide Chain Release Factor 3 (Prfc | 2e-13 | ||
| 3zzu_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 2e-13 | ||
| 3zzu_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 2e-04 | ||
| 3uoq_W | 534 | Crystal Structure Of Release Factor Rf3 Trapped In | 3e-13 | ||
| 3uoq_W | 534 | Crystal Structure Of Release Factor Rf3 Trapped In | 2e-04 | ||
| 2h5e_A | 529 | Crystal Structure Of E.Coli Polypeptide Release Fac | 3e-13 | ||
| 2h5e_A | 529 | Crystal Structure Of E.Coli Polypeptide Release Fac | 2e-04 | ||
| 3zzt_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 5e-13 | ||
| 3zzt_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 4e-04 | ||
| 3vqt_A | 548 | Crystal Structure Analysis Of The Translation Facto | 5e-12 | ||
| 1zn0_B | 655 | Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map | 4e-09 | ||
| 1jny_A | 435 | Crystal Structure Of Sulfolobus Solfataricus Elonga | 4e-09 | ||
| 3agj_A | 437 | Crystal Structure Of Archaeal Pelota And Gtp-bound | 7e-09 | ||
| 3agj_A | 437 | Crystal Structure Of Archaeal Pelota And Gtp-bound | 8e-04 | ||
| 3vmf_A | 440 | Archaeal Protein Length = 440 | 7e-09 | ||
| 3vmf_A | 440 | Archaeal Protein Length = 440 | 9e-04 | ||
| 4ac9_A | 482 | Crystal Structure Of Translation Elongation Factor | 2e-07 | ||
| 1f60_A | 458 | Crystal Structure Of The Yeast Elongation Factor Co | 1e-06 | ||
| 1d2e_A | 397 | Crystal Structure Of Mitochondrial Ef-Tu In Complex | 4e-05 | ||
| 1xb2_A | 409 | Crystal Structure Of Bos Taurus Mitochondrial Elong | 6e-05 | ||
| 3izy_P | 537 | Mammalian Mitochondrial Translation Initiation Fact | 2e-04 | ||
| 3agp_A | 1289 | Structure Of Viral Polymerase Form I Length = 1289 | 2e-04 | ||
| 3mmp_A | 678 | Structure Of The Qb Replicase, An Rna-Dependent Rna | 2e-04 | ||
| 1ob2_A | 393 | E. Coli Elongation Factor Ef-Tu Complexed With The | 2e-04 | ||
| 1d8t_A | 393 | Crystal Structure Of Elongation Factor, Tu (Ef-Tu-M | 2e-04 | ||
| 1efc_A | 393 | Intact Elongation Factor From E.Coli Length = 393 | 2e-04 | ||
| 3u6b_A | 394 | Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 | 2e-04 | ||
| 1dg1_G | 394 | Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Len | 2e-04 | ||
| 1r5b_A | 467 | Crystal Structure Analysis Of Sup35 Length = 467 | 2e-04 | ||
| 1efu_A | 385 | Elongation Factor Complex Ef-TuEF-Ts From Escherich | 2e-04 | ||
| 1aip_A | 405 | Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt | 3e-04 | ||
| 2c77_A | 405 | Ef-Tu Complexed With A Gtp Analog And The Antibioti | 3e-04 | ||
| 1exm_A | 405 | Crystal Structure Of Thermus Thermophilus Elongatio | 4e-04 | ||
| 1eft_A | 405 | The Crystal Structure Of Elongation Factor Ef-Tu Fr | 5e-04 | ||
| 1zun_B | 434 | Crystal Structure Of A Gtp-Regulated Atp Sulfurylas | 5e-04 | ||
| 3izq_1 | 611 | Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To | 5e-04 | ||
| 3p26_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Ap | 5e-04 | ||
| 3j2k_7 | 439 | Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ | 6e-04 | ||
| 3mca_A | 592 | Structure Of The Dom34-Hbs1 Complex And Implication | 6e-04 | ||
| 1wdt_A | 665 | Crystal Structure Of Ttk003000868 From Thermus Ther | 6e-04 | ||
| 3p27_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gd | 9e-04 |
| >pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 | Back alignment and structure |
|
| >pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 | Back alignment and structure |
|
| >pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 | Back alignment and structure |
|
| >pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 704 | Back alignment and structure |
|
| >pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 704 | Back alignment and structure |
|
| >pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And The E. Coli Elongation Factor G Bound To The E. Coli Post-Termination Complex Length = 702 | Back alignment and structure |
|
| >pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And The E. Coli Elongation Factor G Bound To The E. Coli Post-Termination Complex Length = 702 | Back alignment and structure |
|
| >pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation Length = 688 | Back alignment and structure |
|
| >pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation Length = 688 | Back alignment and structure |
|
| >pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a Length = 691 | Back alignment and structure |
|
| >pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a Length = 691 | Back alignment and structure |
|
| >pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With Gdp, At 2.7 Angstroms Resolution Length = 691 | Back alignment and structure |
|
| >pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With Gdp, At 2.7 Angstroms Resolution Length = 691 | Back alignment and structure |
|
| >pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without Nucleotide Length = 691 | Back alignment and structure |
|
| >pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without Nucleotide Length = 691 | Back alignment and structure |
|
| >pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant G16v Length = 691 | Back alignment and structure |
|
| >pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant G16v Length = 691 | Back alignment and structure |
|
| >pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped With A Gtp Analogue Length = 691 | Back alignment and structure |
|
| >pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped With A Gtp Analogue Length = 691 | Back alignment and structure |
|
| >pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex Length = 691 | Back alignment and structure |
|
| >pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex Length = 691 | Back alignment and structure |
|
| >pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant T84a Length = 691 | Back alignment and structure |
|
| >pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant T84a Length = 691 | Back alignment and structure |
|
| >pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex With Argyrin B Length = 709 | Back alignment and structure |
|
| >pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex With Argyrin B Length = 709 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
| >pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From Staphylococcus Aureus With A Fusidic Acid Hyper-Sensitivity Mutation M16i Length = 693 | Back alignment and structure |
|
| >pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From Staphylococcus Aureus With A Fusidic Acid Hyper-Sensitivity Mutation M16i Length = 693 | Back alignment and structure |
|
| >pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G Length = 693 | Back alignment and structure |
|
| >pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G Length = 693 | Back alignment and structure |
|
| >pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From Coxiella Burnetii Length = 528 | Back alignment and structure |
|
| >pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With Mutations M16i And F88l Length = 693 | Back alignment and structure |
|
| >pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With Mutations M16i And F88l Length = 693 | Back alignment and structure |
|
| >pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) Length = 534 | Back alignment and structure |
|
| >pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) Length = 534 | Back alignment and structure |
|
| >pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3 Length = 529 | Back alignment and structure |
|
| >pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3 Length = 529 | Back alignment and structure |
|
| >pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With A Fusidic-Acid-Resistant Mutation F88l Length = 693 | Back alignment and structure |
|
| >pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With A Fusidic-Acid-Resistant Mutation F88l Length = 693 | Back alignment and structure |
|
| >pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3 Length = 548 | Back alignment and structure |
|
| >pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf Length = 655 | Back alignment and structure |
|
| >pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435 | Back alignment and structure |
|
| >pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437 | Back alignment and structure |
|
| >pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437 | Back alignment and structure |
|
| >pdb|3VMF|A Chain A, Archaeal Protein Length = 440 | Back alignment and structure |
|
| >pdb|3VMF|A Chain A, Archaeal Protein Length = 440 | Back alignment and structure |
|
| >pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482 | Back alignment and structure |
|
| >pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 458 | Back alignment and structure |
|
| >pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp Length = 397 | Back alignment and structure |
|
| >pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409 | Back alignment and structure |
|
| >pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537 | Back alignment and structure |
|
| >pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 | Back alignment and structure |
|
| >pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 | Back alignment and structure |
|
| >pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna Length = 393 | Back alignment and structure |
|
| >pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp) Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic Length = 393 | Back alignment and structure |
|
| >pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli Length = 393 | Back alignment and structure |
|
| >pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 Length = 394 | Back alignment and structure |
|
| >pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Length = 394 | Back alignment and structure |
|
| >pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35 Length = 467 | Back alignment and structure |
|
| >pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 385 | Back alignment and structure |
|
| >pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 405 | Back alignment and structure |
|
| >pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270 A Length = 405 | Back alignment and structure |
|
| >pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation Factor Tu (Ef-Tu) In Complex With The Gtp Analogue Gppnhp. Length = 405 | Back alignment and structure |
|
| >pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From Thermus Aquaticus In The Gtp Conformation Length = 405 | Back alignment and structure |
|
| >pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae Length = 434 | Back alignment and structure |
|
| >pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A Translating Ribosome Length = 611 | Back alignment and structure |
|
| >pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
| >pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 439 | Back alignment and structure |
|
| >pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 592 | Back alignment and structure |
|
| >pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8 Length = 665 | Back alignment and structure |
|
| >pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 1e-62
Identities = 72/164 (43%), Positives = 98/164 (59%), Gaps = 28/164 (17%)
Query: 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQT 81
+ +RNF IIAHVDHGKSTLADRLLE TG + Q+LD+L VE+ERGITVK Q
Sbjct: 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQA 60
Query: 82 ASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA------------- 128
+ Y + DG Y L+LIDTPGHVDFS EV+R+LAAC+G +LLIDA
Sbjct: 61 VRMFYKA-KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW 119
Query: 129 -------------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
N++DL +A+ + ++Q++ + +D + +
Sbjct: 120 KAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILA 163
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-28
Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 196 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQT 254
+ +RNF IIAHVDHGKSTLADRLLE TG + Q+LD+L VE+ERGITVK Q
Sbjct: 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQA 60
Query: 255 ASL 257
+
Sbjct: 61 VRM 63
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 3e-62
Identities = 73/162 (45%), Positives = 102/162 (62%), Gaps = 28/162 (17%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTAS 83
+ IRNFSIIAH+DHGKSTL+DR++++ G + +QVLDS+ +E+ERGIT+KAQ+ +
Sbjct: 1 MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVT 60
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA--------------- 128
L Y + DGE Y LN IDTPGHVDFS EV+RSLAAC+G +L++DA
Sbjct: 61 LDYKA-SDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTA 119
Query: 129 -----------NQVDLKNANPEACEEQLQTLFNIDKKSVLRI 159
N++DL A+PE E+++ + ID +R
Sbjct: 120 MEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRC 161
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-28
Identities = 34/61 (55%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS-SGSSQVLDSLQVEQERGITVKAQTAS 256
+ IRNFSIIAH+DHGKSTL+DR++++ G + +QVLDS+ +E+ERGIT+KAQ+ +
Sbjct: 1 MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVT 60
Query: 257 L 257
L
Sbjct: 61 L 61
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-36
Identities = 49/114 (42%), Positives = 71/114 (62%), Gaps = 12/114 (10%)
Query: 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTASL 84
+RN S+IAHVDHGKSTL D L++ G + + +G ++ D+ + EQERGIT+K+ SL
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISL 77
Query: 85 RY----------TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
DG +L+NLID+PGHVDFS+EVT +L G ++++D
Sbjct: 78 YSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDT 131
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-16
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTASL 257
+RN S+IAHVDHGKSTL D L++ G + + +G ++ D+ + EQERGIT+K+ SL
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISL 77
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 3e-22
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKA 79
A IR +++ H GK+TL + LL TG G + D + TV+
Sbjct: 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRT 64
Query: 80 QTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
A L + + + L+D PG+ DF E+ +L A ++ + A
Sbjct: 65 GVAPLLF------RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSA 107
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 197 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITV 250
A IR +++ H GK+TL + LL TG G + D + TV
Sbjct: 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTV 62
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 1e-21
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 9/115 (7%)
Query: 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERGIT 76
PIAR RN I AH+D GK+T +R+L TG + G++ +D ++ EQERGIT
Sbjct: 4 TTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAAT-MDWMEQEQERGIT 62
Query: 77 VK--AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+ A TA + E + +N+IDTPGHVDF+ EV RS+ G V++ A
Sbjct: 63 ITSAATTAFWSGMA-KQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAV 116
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 195 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV-----LSSGSSQVLDSLQVEQERGIT 249
PIAR RN I AH+D GK+T +R+L TG + G++ +D ++ EQERGIT
Sbjct: 4 TTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAAT-MDWMEQEQERGIT 62
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 | Back alignment and structure |
|---|
Score = 90.2 bits (225), Expect = 8e-21
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 14/114 (12%)
Query: 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITV 77
+ + + RN I+AH+D GK+T +R+L TG + G + +D ++ EQ+RGIT+
Sbjct: 4 EFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI 63
Query: 78 K--AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
A TA+ + +N+IDTPGHVDF+ EV RSL G V ++DA
Sbjct: 64 TSAATTAAWE--------GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQ 109
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 8e-08
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 195 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGIT 249
+ + + RN I+AH+D GK+T +R+L TG + G + +D ++ EQ+RGIT
Sbjct: 4 EFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGIT 62
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Length = 691 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 2e-20
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 14/114 (12%)
Query: 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITV 77
+ + R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+
Sbjct: 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI 65
Query: 78 K--AQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
T + ++ +N+IDTPGHVDF+ EV RS+ G +++ D++
Sbjct: 66 TAAVTTCFWK--------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSS 111
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Length = 691 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 195 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGIT 249
+ + R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT
Sbjct: 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGIT 64
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 2e-20
Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 14/112 (12%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQ--VLDSLQVEQERGIT 76
+A+ R F+II+H D GK+T+ +++L + GTV GS+Q D +++E++RGI+
Sbjct: 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGIS 69
Query: 77 VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
+ Y + L+NL+DTPGH DFS + R+L A +++IDA
Sbjct: 70 ITTSVMQFPY------HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDA 115
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 7e-08
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 8/61 (13%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQ--VLDSLQVEQERGIT 249
+A+ R F+II+H D GK+T+ +++L + GTV GS+Q D +++E++RGI+
Sbjct: 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGIS 69
Query: 250 V 250
+
Sbjct: 70 I 70
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 2e-20
Identities = 40/112 (35%), Positives = 67/112 (59%), Gaps = 14/112 (12%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQ--VLDSLQVEQERGIT 76
A R F+II+H D GK+TL ++LL ++ GT+ S +++ D +++E++RGI+
Sbjct: 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGIS 69
Query: 77 VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
V Y ++YL+NL+DTPGH DF+ + R+L A +++IDA
Sbjct: 70 VTTSVMQFPY------KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDA 115
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 9e-08
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 8/61 (13%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLL------EMTGTVLSSGSSQ--VLDSLQVEQERGIT 249
A R F+II+H D GK+TL ++LL ++ GT+ S +++ D +++E++RGI+
Sbjct: 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGIS 69
Query: 250 V 250
V
Sbjct: 70 V 70
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-13
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 37/125 (29%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 72
N +I HVDHGKSTL RLL G + L S + +LD L+ E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 73 RGITV-----KAQTASLRYTSILDGEEYLLNLIDTPGHVDF-SNEVT-RSLAACQGVVLL 125
RG+T+ + +T +T +ID PGH DF N +T S A +L+
Sbjct: 68 RGVTINLTFMRFETKKYFFT-----------IIDAPGHRDFVKNMITGASQADA--AILV 114
Query: 126 IDANQ 130
+ A +
Sbjct: 115 VSAKK 119
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-08
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 245
N +I HVDHGKSTL RLL G + L S + +LD L+ E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 246 RGITV 250
RG+T+
Sbjct: 68 RGVTI 72
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 4e-13
Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 33/141 (23%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 72
N +I HVD GKST L+ G + L GS + VLD L+ E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 73 RGITV-----KAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLID 127
RGIT+ K +T + T +ID PGH DF + + +L+I
Sbjct: 69 RGITIDIALWKFETPKYQVT-----------VIDAPGHRDFIKNMITGTSQADCAILIIA 117
Query: 128 ANQVDLKNANPEACEEQLQTL 148
+ + + + + L
Sbjct: 118 GGVGEFEAGISKDGQTREHAL 138
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 5e-08
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 245
N +I HVD GKST L+ G + L GS + VLD L+ E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 246 RGITV 250
RGIT+
Sbjct: 69 RGITI 73
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 4e-13
Identities = 38/125 (30%), Positives = 51/125 (40%), Gaps = 37/125 (29%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 72
N I HVD GKSTL +L +TG V S S LDS E+E
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 73 RGITV-----KAQTASLRYTSILDGEEYLLNLIDTPGHVDF-SNEVT-RSLAACQGVVLL 125
+G TV +T R++ L+D PGH + +N + S A VL+
Sbjct: 105 KGKTVEVGRAYFETEHRRFS-----------LLDAPGHKGYVTNMINGASQADI--GVLV 151
Query: 126 IDANQ 130
I A +
Sbjct: 152 ISARR 156
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 245
N I HVD GKSTL +L +TG V S S LDS E+E
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 246 RGITV 250
+G TV
Sbjct: 105 KGKTV 109
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 5e-13
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 37/125 (29%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 72
+ + HVD GKST+ R++ G + GS + +LD+ + E+
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA 238
Query: 73 RGITV-----KAQTASLRYTSILDGEEYLLNLIDTPGHVDF-SNEVT-RSLAACQGVVLL 125
RG+T+ ++ Y + D PGH DF S + S A VL+
Sbjct: 239 RGVTMDVASTTFESDKKIYE-----------IGDAPGHRDFISGMIAGASSADF--AVLV 285
Query: 126 IDANQ 130
+D++Q
Sbjct: 286 VDSSQ 290
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 245
+ + HVD GKST+ R++ G + GS + +LD+ + E+
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA 238
Query: 246 RGITV 250
RG+T+
Sbjct: 239 RGVTM 243
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 6e-13
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 37/125 (29%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 72
+F ++ HVD GKSTL RLL V + S + ++D E+E
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 94
Query: 73 RGITV-----KAQTASLRYTSILDGEEYLLNLIDTPGHVDF-SNEVT-RSLAACQGVVLL 125
RG+TV T +T ++D PGH DF N + S A +L
Sbjct: 95 RGVTVSICTSHFSTHRANFT-----------IVDAPGHRDFVPNAIMGISQADM--AILC 141
Query: 126 IDANQ 130
+D +
Sbjct: 142 VDCST 146
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 245
+F ++ HVD GKSTL RLL V + S + ++D E+E
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 94
Query: 246 RGITV 250
RG+TV
Sbjct: 95 RGVTV 99
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-12
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 33/101 (32%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 72
+F ++ HVD GKSTL RLL V + S + ++D E+E
Sbjct: 169 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 228
Query: 73 RGITV-----KAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108
RG+TV T +T ++D PGH DF
Sbjct: 229 RGVTVSICTSHFSTHRANFT-----------IVDAPGHRDF 258
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTV--------------LSSGS---SQVLDSLQVEQE 245
+F ++ HVD GKSTL RLL V + S + ++D E+E
Sbjct: 169 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 228
Query: 246 RGITV 250
RG+TV
Sbjct: 229 RGVTV 233
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 25/120 (20%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV-------------------LDSLQVE 70
F +VD GKSTL RLL + + + +D LQ E
Sbjct: 26 RFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAE 85
Query: 71 QERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+E+GIT+ A +++ +++ + DTPGH ++ + + C ++L+DA
Sbjct: 86 REQGITI--DVAYRYFST--AKRKFI--IADTPGHEQYTRNMATGASTCDLAIILVDARY 139
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 20/89 (22%)
Query: 181 DGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV---- 236
L D A + +R F +VD GKSTL RLL + + +
Sbjct: 5 SDLISEDILAYLGQHERKEMLR-FLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDS 63
Query: 237 ---------------LDSLQVEQERGITV 250
+D LQ E+E+GIT+
Sbjct: 64 KKSGTTGDDVDLALLVDGLQAEREQGITI 92
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 3e-10
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 29/107 (27%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGIT-----VKAQTASL 84
N I H+DHGK+TL+ L T S+ D L Q+RGIT + +
Sbjct: 21 NLGIFGHIDHGKTTLSKVL---TEIA----STSAHDKLPESQKRGITIDIGFSAFKLENY 73
Query: 85 RYTSILDGEEYLLNLIDTPGHVDF-SNEVTRSLAACQ--GVVLLIDA 128
R T L+D PGH D V+ AA ++++DA
Sbjct: 74 RIT-----------LVDAPGHADLIRAVVS---AADIIDLALIVVDA 106
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGIT 249
N I H+DHGK+TL+ L T S+ D L Q+RGIT
Sbjct: 21 NLGIFGHIDHGKTTLSKVL---TEIA----STSAHDKLPESQKRGIT 60
|
| >1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3 Length = 76 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-06
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 140 ACEEQLQTLFNIDKKSVL-RIWHRRCFSCADCHRSLDSTNLND 181
C+ + ++ ++ + L + WHR C C C ++L S +
Sbjct: 5 KCD---KEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAE 44
|
| >2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-06
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 140 ACEEQLQTLFNIDKKSVL-RIWHRRCFSCADCHRSLDSTNLND 181
C++ T++ +K S L + WH+ C C C ++L +
Sbjct: 14 KCDK---TVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAE 53
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 4e-06
Identities = 41/252 (16%), Positives = 74/252 (29%), Gaps = 86/252 (34%)
Query: 40 GKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99
GK+ +A V S +V+ + +D + + LNL
Sbjct: 162 GKTWVA---------------LDVCLSYKVQCK-----------------MDFKIFWLNL 189
Query: 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNA------NPEACEEQLQTLFNID- 152
+ + V L Q ++ ID N + + + +L+ L
Sbjct: 190 ----KNCNSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 153 -KKS--VLR-IWHRRC-----FSC-----------AD-------CHRSLDSTNLNDGLAK 185
+ VL + + + SC D H SLD + + L
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD--HHSMTLTP 300
Query: 186 PDSKA-------TPYEDIPI-ARIRN---FSIIAHVDHGKSTLADRLLEMTGTVLSSGSS 234
+ K+ +D+P N SIIA D + L++
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 235 QVLDSLQVEQER 246
L+ L+ + R
Sbjct: 361 SSLNVLEPAEYR 372
|
| >1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A Length = 81 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-06
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 158 RIWHRRCFSCADCHRSLDSTNLND 181
R +HR CF C C ++LDST +
Sbjct: 28 RSFHRCCFLCMVCRKNLDSTTVAI 51
|
| >2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 91 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 1e-05
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 140 ACEEQLQTLFNIDKKSVL-RIWHRRCFSCADCHRSLDSTNLND 181
C+ +T++ +++ +++H CF C+ C+ L
Sbjct: 20 ECQ---KTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYAS 59
|
| >1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-05
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 158 RIWHRRCFSCADCHRSLDSTN 178
+ WH+ CF CA C +SL+ST
Sbjct: 136 KSWHKSCFRCAKCGKSLESTT 156
|
| >1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 1e-04
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 139 EACEEQLQTLFNIDKKSVL-RIWHRRCFSCADCHRSLDSTN 178
C++ ++ ++ +H+ CF C C ++LDST
Sbjct: 11 GVCQK---AVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTT 48
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 28/107 (26%)
Query: 36 HVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQE-RGIT------------VKAQTA 82
HVDHGK+TL D + S V +E GIT ++
Sbjct: 13 HVDHGKTTLLDHIR----------GSAV-----ASREAGGITQHIGATEIPMDVIEGICG 57
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
+ L IDTPGH F+ R A +L++D N
Sbjct: 58 DFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDIN 104
|
| >2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 3e-05
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 158 RIWHRRCFSCADCHRSLDSTNLN 180
+HR CF C C +L
Sbjct: 36 HFFHRSCFRCHTCEATLWPGGYE 58
|
| >1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 1e-04
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 158 RIWHRRCFSCADCHRSLDSTN 178
+ WH CF C+ C + L S +
Sbjct: 27 QTWHEHCFLCSGCEQPLGSRS 47
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 34/121 (28%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK-----AQTA-- 82
N ++ HVDHGK++L L TG V + S+ E RGI+++ +
Sbjct: 10 NIGMVGHVDHGKTSLTKAL---TG-VWTDRHSE-------ELRRGISIRLGYADCEIRKC 58
Query: 83 ----SLRYTSILDGEEYLLNL------IDTPGHVDF-SNEVTRSLAACQ--GVVLLIDAN 129
+ +D+PGH + ++ A G +L+I AN
Sbjct: 59 PQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLS---GASLMDGAILVIAAN 115
Query: 130 Q 130
+
Sbjct: 116 E 116
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 11/49 (22%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 251
N ++ HVDHGK++L L TG V + S+ E RGI+++
Sbjct: 10 NIGMVGHVDHGKTSLTKAL---TG-VWTDRHSE-------ELRRGISIR 47
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 26/90 (28%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQV-----EQERGIT-----VK 78
N I HVDHGK+TL + +L+ G ++ ++ E+ RGIT V+
Sbjct: 5 NVGTIGHVDHGKTTLTAAIT----KILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 79 AQTASLRYTSILDGEEYLLNLIDTPGHVDF 108
TA+ Y D PGH D+
Sbjct: 61 YSTAARHYAH-----------TDCPGHADY 79
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQV-----EQERGITVKAQTAS 83
N I HVDHGK+TL + TVL+ Q+ E+ RGIT+ T+
Sbjct: 298 NVGTIGHVDHGKTTLTAAIT----TVLAKTYGGAARAFDQIDNAPEEKARGITI--NTSH 351
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDF 108
+ Y + Y +D PGH D+
Sbjct: 352 VEYDT--PTRHY--AHVDCPGHADY 372
|
| >2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 82 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 2e-04
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 158 RIWHRRCFSCADCHRSLDST 177
R +H CF C C RSL
Sbjct: 37 RHFHEGCFRCCRCQRSLADE 56
|
| >1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 2e-04
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 158 RIWHRRCFSCADCHRSLDSTN 178
+WH+ CF+C++C + + + +
Sbjct: 37 TVWHKDCFTCSNCKQVIGTGS 57
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 12/105 (11%), Positives = 21/105 (20%), Gaps = 29/105 (27%)
Query: 36 HVDHGKSTLADRLLEMTGTVLSSGSSQVL----DSLQVEQERGIT-----VKAQTASLRY 86
H H S L R + + ++G +
Sbjct: 6 HHHHHSSGLVPRG---SHMANVAIIGTEKSGRTSLAANLGKKGTSSDITMYNNDKEGRNM 62
Query: 87 TSILDGEEYLLNLIDTPGHVDF-SNEVTRSLAACQ--GVVLLIDA 128
+D + + +T A VL I
Sbjct: 63 V-----------FVDAHSYPKTLKSLIT---ALNISDIAVLCIPP 93
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 34/121 (28%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK-----AQTA-- 82
N ++ HVDHGK+TL L TG V + S+ E RGIT+K A+
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TG-VWTDTHSE-------ELRRGITIKIGFADAEIRRC 60
Query: 83 ----SLRYTSILDGEEYLLNL------IDTPGHVDF-SNEVTRSLAACQ--GVVLLIDAN 129
+ + + ID PGH + + A G +L+I AN
Sbjct: 61 PNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLA---GASLMDGAILVIAAN 117
Query: 130 Q 130
+
Sbjct: 118 E 118
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 8e-04
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 11/49 (22%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 251
N ++ HVDHGK+TL L TG V + S+ E RGIT+K
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TG-VWTDTHSE-------ELRRGITIK 49
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 17/86 (19%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQV-----EQERGITVKAQTA 82
N I HVDHGK+TL L V ++ + +V D + E+ RGIT+ TA
Sbjct: 13 NVGTIGHVDHGKTTLTAALT----YVAAAENPNVEVKDYGDIDKAPEERARGITI--NTA 66
Query: 83 SLRYTSILDGEEYLLNLIDTPGHVDF 108
+ Y + Y + +D PGH D+
Sbjct: 67 HVEYET--AKRHY--SHVDCPGHADY 88
|
| >1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72 | Back alignment and structure |
|---|
Score = 37.8 bits (88), Expect = 3e-04
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 158 RIWHRRCFSCADCHRSLDSTN 178
WH CF C C + + + +
Sbjct: 27 SSWHETCFICHRCQQPIGTKS 47
|
| >1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76 | Back alignment and structure |
|---|
Score = 37.5 bits (87), Expect = 3e-04
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 158 RIWHRRCFSCADCHRSL 174
WH CF+C C SL
Sbjct: 29 SQWHSECFNCGKCSVSL 45
|
| >2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
Score = 37.5 bits (87), Expect = 3e-04
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 158 RIWHRRCFSCADCHRSL 174
+ WH CF C C +L
Sbjct: 40 QSWHDYCFHCKKCSVNL 56
|
| >2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 69 | Back alignment and structure |
|---|
Score = 37.4 bits (87), Expect = 3e-04
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 158 RIWHRRCFSCADCHRSLDST 177
+ WH CF C C + L
Sbjct: 25 QPWHADCFVCVTCSKKLAGQ 44
|
| >2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80 | Back alignment and structure |
|---|
Score = 37.4 bits (87), Expect = 4e-04
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 158 RIWHRRCFSCADCHRSLDST 177
+ WH CF C C L
Sbjct: 36 KQWHVSCFKCQTCSVILTGE 55
|
| >1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79 | Back alignment and structure |
|---|
Score = 37.0 bits (86), Expect = 4e-04
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 158 RIWHRRCFSCADCHRSL 174
R H C+ C DC +L
Sbjct: 35 RHRHPECYVCTDCGTNL 51
|
| >2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 5e-04
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 158 RIWHRRCFSCADCHRSLDST 177
R WH +C C+DCH L
Sbjct: 27 RHWHSKCLKCSDCHVPLAER 46
|
| >1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72 | Back alignment and structure |
|---|
Score = 36.7 bits (85), Expect = 5e-04
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 158 RIWHRRCFSCADCHRSL 174
R WH CF+C C SL
Sbjct: 29 RQWHNDCFNCKKCSLSL 45
|
| >2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70 | Back alignment and structure |
|---|
Score = 36.9 bits (86), Expect = 5e-04
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 158 RIWHRRCFSCADCHRSLDST 177
+ WH+ CF C C + L
Sbjct: 25 QPWHKECFVCTACRKQLSGQ 44
|
| >3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B Length = 72 | Back alignment and structure |
|---|
Score = 36.6 bits (85), Expect = 5e-04
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 158 RIWHRRCFSCADCHRSLDSTN 178
++H +CF CA C +
Sbjct: 33 ELYHEQCFVCAQCFQQFPEGL 53
|
| >1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 77 | Back alignment and structure |
|---|
Score = 36.6 bits (85), Expect = 6e-04
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 158 RIWHRRCFSCADCHRSLDSTN 178
++H +CF CA C +
Sbjct: 33 ELYHEQCFVCAQCFQQFPEGL 53
|
| >2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Length = 101 | Back alignment and structure |
|---|
Score = 37.4 bits (87), Expect = 6e-04
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 158 RIWHRRCFSCADCHRSLDST 177
R WH CF CA C L +
Sbjct: 27 RFWHDTCFRCAKCLHPLANE 46
|
| >1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72 | Back alignment and structure |
|---|
Score = 36.7 bits (85), Expect = 6e-04
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 158 RIWHRRCFSCADCHRSL 174
R++H CF C+ C L
Sbjct: 27 RVFHVGCFVCSTCRAQL 43
|
| >2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81 | Back alignment and structure |
|---|
Score = 36.6 bits (85), Expect = 8e-04
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 158 RIWHRRCFSCADCHRSLDST 177
+ +H CF+C CHR LD
Sbjct: 35 KAYHPGCFTCVVCHRGLDGI 54
|
| >1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 89 | Back alignment and structure |
|---|
Score = 36.7 bits (85), Expect = 9e-04
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 158 RIWHRRCFSCADCHRSL 174
+ H CF CADC+ +L
Sbjct: 45 KYRHPECFVCADCNLNL 61
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.94 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.92 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.92 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.91 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.91 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.91 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.91 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.9 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.9 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.9 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.89 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.89 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.89 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.88 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.88 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.88 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.87 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.87 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.86 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.84 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.84 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.83 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.83 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.82 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.8 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.8 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.8 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.79 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.79 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.79 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.79 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.79 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.77 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.77 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.77 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.77 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.77 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.76 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.76 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.76 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.76 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.76 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.76 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.76 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.76 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.76 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.75 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.75 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.75 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.75 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.75 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.75 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.75 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.75 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.75 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.75 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.75 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.75 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.75 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.75 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.75 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.75 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.75 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.74 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.74 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.74 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.74 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.74 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.74 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.74 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.74 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.74 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.74 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.74 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.74 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.74 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.74 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.74 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.73 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.73 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.73 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.73 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.73 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.73 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.73 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.73 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.73 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.73 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.73 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.73 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.72 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.72 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.72 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.72 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.72 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.72 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.72 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.72 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.72 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.71 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.71 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.71 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.71 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.71 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.71 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.71 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.71 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.71 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.71 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.71 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.7 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.7 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.7 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.7 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.7 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.7 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.7 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.7 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.7 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.7 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.69 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.69 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.69 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.69 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.68 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.68 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.68 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.68 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.68 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.68 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.68 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.67 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.67 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.67 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.67 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.67 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.67 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.66 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.66 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.66 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.66 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.66 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.66 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.66 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.66 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.66 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.66 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.65 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.65 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.65 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.46 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.64 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.64 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.64 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.63 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.63 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.62 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.61 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.6 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.6 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.56 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.55 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.55 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.54 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.54 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.54 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.52 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.52 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.52 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.52 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.5 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.49 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.48 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.43 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.38 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.35 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.33 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.33 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.32 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.29 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.29 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.28 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.27 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.26 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.26 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.25 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.23 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.22 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.19 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.15 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.14 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.14 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.13 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.09 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.07 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.04 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.03 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.94 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.9 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 98.87 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.84 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 98.78 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.77 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.75 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.74 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.73 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 98.73 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.7 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.66 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.63 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.62 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.51 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.43 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.37 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.35 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.3 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.27 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.16 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.1 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.09 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.0 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.99 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 97.97 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.95 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.89 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 97.74 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 97.71 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.61 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 97.59 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.55 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 97.43 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.35 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 97.26 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 97.26 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 97.25 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.16 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 97.14 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.12 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.09 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.06 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.03 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 97.0 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 96.85 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 96.84 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 96.83 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.83 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.79 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 96.76 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 96.71 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 96.68 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 96.62 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 96.6 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.57 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 96.56 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.54 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 96.53 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 96.53 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.5 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 96.5 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 96.48 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 96.47 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.47 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.46 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.45 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 96.45 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.42 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 96.4 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.39 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.37 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.37 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.35 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.34 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.33 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.33 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.3 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.3 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.28 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.28 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.28 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.26 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.26 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.25 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.24 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.24 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.19 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.16 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.14 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.14 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.13 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 96.13 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 96.12 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.12 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.12 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.09 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.07 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 96.07 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 96.06 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.05 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 96.04 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.04 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 96.03 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.02 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.01 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 95.98 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 95.95 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 95.94 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.94 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 95.93 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 95.91 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.9 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 95.88 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.88 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 95.87 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.87 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.86 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 95.86 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 95.86 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.86 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 95.85 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 95.85 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 95.85 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 95.85 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 95.85 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.84 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 95.84 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 95.84 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 95.83 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.83 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 95.83 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 95.83 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.83 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 95.82 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 95.82 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.81 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.81 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 95.81 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.81 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.78 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.78 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.77 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 95.76 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 95.75 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 95.75 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.74 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 95.73 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 95.73 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 95.71 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.71 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 95.71 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 95.7 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 95.69 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.68 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 95.67 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 95.67 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 95.67 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.67 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 95.64 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 95.64 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 95.63 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.63 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 95.63 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.63 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 95.62 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.62 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.59 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 95.59 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 95.57 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 95.55 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.54 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 95.52 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 95.5 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.49 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.49 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 95.47 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.47 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 95.46 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 95.46 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 95.46 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 95.4 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 95.38 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 95.38 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.38 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 95.38 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 95.38 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.37 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.35 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.35 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.34 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.32 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.3 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.3 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.27 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.26 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.26 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 95.2 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 95.19 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 95.17 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 95.17 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.17 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 95.15 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 95.14 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 95.13 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.12 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.11 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.11 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 95.1 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.1 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.08 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 95.08 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 95.06 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 95.03 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.01 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 95.0 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.95 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 94.91 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 94.91 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 94.9 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.85 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 94.85 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 94.83 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 94.83 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.82 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 94.78 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.78 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.73 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 94.73 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 94.73 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 94.72 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 94.69 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.61 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 94.6 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 94.58 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 94.53 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 94.52 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.52 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.51 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 94.48 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 94.46 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 94.46 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.42 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 94.42 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 94.4 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.36 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 94.32 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 94.29 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 94.29 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.28 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 94.26 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 94.23 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 94.21 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 94.19 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 94.16 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.11 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.09 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 94.09 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 94.08 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 94.06 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 94.05 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 94.04 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 94.04 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 93.99 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 93.97 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 93.96 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 93.94 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.93 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 93.83 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 93.79 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.79 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 93.78 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 93.78 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 93.75 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 93.72 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 93.71 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.71 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 93.54 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 93.5 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 93.5 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 93.49 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 93.46 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 93.46 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 93.42 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 93.4 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 93.39 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.35 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 93.32 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 93.25 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.23 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 93.23 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 93.21 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 93.21 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 93.2 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.19 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 93.16 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 93.11 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 93.07 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 93.07 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 93.03 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 93.02 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 92.95 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 92.93 |
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=202.60 Aligned_cols=194 Identities=23% Similarity=0.297 Sum_probs=147.4
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLR 85 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~ 85 (257)
.+.....+|+++|++|+|||||+++|++..+.+... +.++++|.++.|+++|+|++.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 344567899999999999999999999887766543 346789999999999999998888877
Q ss_pred eecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------c
Q psy12244 86 YTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------V 131 (257)
Q Consensus 86 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~ 131 (257)
+.. +.++|||||||++|..++..+++.+|++|||+|+++ +
T Consensus 92 ~~~------~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~ 165 (439)
T 3j2k_7 92 TEK------KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKM 165 (439)
T ss_pred cCC------eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecC
Confidence 766 799999999999999999999999999999999963 7
Q ss_pred CCCCCC-----HHHHHHHHHHHh---CCC---ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCC
Q psy12244 132 DLKNAN-----PEACEEQLQTLF---NID---KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKAT 191 (257)
Q Consensus 132 D~~~~~-----~~~~~~~~~~~~---~~~---~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~ 191 (257)
|+...+ .++..+++..++ ++. ..+++++||++|.|++++.+. ++||.+ ++.+.....
T Consensus 166 Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~---~~w~~g~~L~~~l~~i~~~~~~~~ 242 (439)
T 3j2k_7 166 DDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDF---CPWYIGLPFIPYLDNLPNFNRSVD 242 (439)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccccc---ccccCchHHHHHHHhCCCCccCCC
Confidence 764322 334444444443 443 467999999999999997763 335544 233334444
Q ss_pred CCCCcchhhh---cceeeEeeecccchhhHHHHHHhh
Q psy12244 192 PYEDIPIARI---RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 192 ~~~~~~~~~~---~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+..+++.+. .+.++.|++.+|....++.+...+
T Consensus 243 ~p~r~~v~~~~~~~G~v~~G~v~~G~l~~Gd~v~~~p 279 (439)
T 3j2k_7 243 GPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMP 279 (439)
T ss_pred CCeEEEEEEEEcCCCeEEEEEEEeeEEecCCEEEEcc
Confidence 4555665432 457788999999988888876544
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-25 Score=203.17 Aligned_cols=194 Identities=39% Similarity=0.619 Sum_probs=133.9
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
+.++.+||+|+|++|+|||||+++|++.++.+... ...+++|.+..|+++|+|+......+.|... ++..+.++||||
T Consensus 2 ~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~-dg~~~~inliDT 80 (600)
T 2ywe_A 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK-DGNTYKLHLIDT 80 (600)
T ss_dssp CGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT-TSCEEEEEEECC
T ss_pred CccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC-CCCeEEEEEEEC
Confidence 45688999999999999999999999877766443 2456788999999999999988888877631 345589999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
|||.+|...+..+++.+|++|+|+|+++ +|+..++.++..+++++.++....++
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~v 160 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEA 160 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGC
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccE
Confidence 9999999999999999999999999987 89988888888888888888766679
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHHHH
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
+++||++|.|+++++++|... ++.|......+.... .+..++.+..|++.+|....++.+..
T Consensus 161 i~vSAktg~GI~~Lle~I~~~-----lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~ 227 (600)
T 2ywe_A 161 ILASAKEGIGIEEILEAIVNR-----IPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIML 227 (600)
T ss_dssp EECBTTTTBSHHHHHHHHHHH-----SCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEE
T ss_pred EEEEeecCCCchHHHHHHHHh-----cccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEe
Confidence 999999999999999887632 222222222222211 12345777778888888887776643
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-25 Score=199.87 Aligned_cols=190 Identities=42% Similarity=0.680 Sum_probs=125.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
++.+||+|+|++|+|||||+++|++.++.+... ...+++|.+..|+++|+|+......+.|... ++..+.++||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~-~g~~~~l~liDTPG 80 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS-DGETYQLNFIDTPG 80 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT-TSCEEEEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC-CCCeEEEEEEECCC
Confidence 468999999999999999999999987766543 2456788899999999999988888888631 34558999999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccceEE
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVLR 158 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (257)
|.+|...+..+++.+|++|+|+|+++ +|+..++.++..+++++.++....++++
T Consensus 81 h~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~ 160 (599)
T 3cb4_D 81 HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR 160 (599)
T ss_dssp CGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEE
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEE
Confidence 99999999999999999999999987 8998888888888898888876667999
Q ss_pred ecccccccccccccccCCCcccCCCCCCCCCCCCCCCcch-----hhhcceeeEeeecccchhhHHHH
Q psy12244 159 IWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPI-----ARIRNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~G~v~~Gk~~~~~~i 221 (257)
+||++|.|++++++.|... ++.|......+....+ +...+.+..+++-+|....++.+
T Consensus 161 vSAktg~GI~~Ll~~I~~~-----lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v 223 (599)
T 3cb4_D 161 CSAKTGVGVQDVLERLVRD-----IPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223 (599)
T ss_dssp ECTTTCTTHHHHHHHHHHH-----SCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEE
T ss_pred eecccCCCchhHHHHHhhc-----CCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEE
Confidence 9999999999999887632 2222222222222211 23456667777888877766654
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-26 Score=208.92 Aligned_cols=184 Identities=24% Similarity=0.382 Sum_probs=144.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
++|||+|+||+++|||||+.+|++.++.+.+. +..+++|..+.|++||+|+......+.|++ +.++||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~------~~iNlIDT 74 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN------TKVNIIDT 74 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS------CBCCCEEC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC------EEEEEEEC
Confidence 57899999999999999999999999988664 567789999999999999999999999987 89999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC-----
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI----- 151 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~----- 151 (257)
|||.||..++.++++.+|++|+||||.+ ||+..+++....+++++.++.
T Consensus 75 PGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~ 154 (638)
T 3j25_A 75 PGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIK 154 (638)
T ss_dssp CCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCC
T ss_pred CCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccc
Confidence 9999999999999999999999999998 898888888887777765532
Q ss_pred --------------------------------------------------------CccceEEecccccccccccccccC
Q psy12244 152 --------------------------------------------------------DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 --------------------------------------------------------~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...|++..||+++.|++.|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~ 234 (638)
T 3j25_A 155 QKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVIT 234 (638)
T ss_dssp CCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHH
T ss_pred ceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhh
Confidence 123678889999999999998886
Q ss_pred CCcccCCCCCCCCCCCCCC-----CcchhhhcceeeEeeecccchhhHHHH
Q psy12244 176 STNLNDGLAKPDSKATPYE-----DIPIARIRNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~v~~Gk~~~~~~i 221 (257)
.. ++.|......+. ....+..++....+++-+|....++.+
T Consensus 235 ~~-----~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v 280 (638)
T 3j25_A 235 NK-----FYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSV 280 (638)
T ss_dssp HS-----CCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCS
T ss_pred cc-----ccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCcc
Confidence 32 222221111111 111233455556677777766655554
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-24 Score=188.44 Aligned_cols=195 Identities=18% Similarity=0.279 Sum_probs=136.9
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------------CCcccccchHHHhhhCceEeceee
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------------GSSQVLDSLQVEQERGITVKAQTA 82 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------------~~~~~~d~~~~e~~~g~t~~~~~~ 82 (257)
.......++|+++|++|+|||||+++|++..+.+... ...+.+|.++.|+++|+|++....
T Consensus 18 ~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~ 97 (434)
T 1zun_B 18 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR 97 (434)
T ss_dssp STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred hcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee
Confidence 3334567899999999999999999999876544221 122457888899999999998777
Q ss_pred EEEeecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCC
Q psy12244 83 SLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKN 135 (257)
Q Consensus 83 ~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~ 135 (257)
.+.+.. ..++|||||||++|..++..+++.+|++|+|+|+++ +|+.+
T Consensus 98 ~~~~~~------~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 98 YFSTAK------RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEECSS------EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred EeecCC------ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 766655 789999999999999999999999999999999986 78866
Q ss_pred CCH---HHHHHHHHHHh---C--CCccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCCcch
Q psy12244 136 ANP---EACEEQLQTLF---N--IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYEDIPI 198 (257)
Q Consensus 136 ~~~---~~~~~~~~~~~---~--~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~ 198 (257)
++. +...+++.+++ + ....+++++||++|.|++++++.+ +||.+ ++.+......+..+++
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~---~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v 248 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERS---PWYAGQSLMEILETVEIASDRNYTDLRFPV 248 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTC---TTCCSCCTTHHHHHSCCTTCCCSSSCEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccC---ccccCchHHHHHhcCCCcccCCCCCcEEEE
Confidence 442 23444555443 4 344689999999999999987653 46554 2233333334445555
Q ss_pred hhh-----cceeeEeeecccchhhHHHHHHhh
Q psy12244 199 ARI-----RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 199 ~~~-----~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+. .+....|++.+|....++.+...+
T Consensus 249 ~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p 280 (434)
T 1zun_B 249 QYVNRPNLNFRGFAGTLASGIVHKGDEIVVLP 280 (434)
T ss_dssp CEEECSSSSCCEEEEECCBSCEETTCEEEETT
T ss_pred EEEeccCCCceEEEEEEecceEeCCCEEEEec
Confidence 432 223467899999999888876654
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-25 Score=195.73 Aligned_cols=195 Identities=24% Similarity=0.266 Sum_probs=114.9
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEe
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRY 86 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 86 (257)
...+.++|+++|++|+|||||+++|++..+.+... ...+.+|..+.|+++|+|++.....+.+
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 34567899999999999999999999877654311 2356788899999999999988777776
Q ss_pred ecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cC
Q psy12244 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VD 132 (257)
Q Consensus 87 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D 132 (257)
.. ..++|||||||++|..++..+++.+|++|||+|+++ +|
T Consensus 119 ~~------~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~D 192 (467)
T 1r5b_A 119 EH------RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD 192 (467)
T ss_dssp SS------EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTT
T ss_pred CC------eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECcc
Confidence 55 789999999999999999999999999999999863 78
Q ss_pred CCCCC-----HHHHHHHHHHHh----CCC---ccceEEecccccccccccccccCCCcccCCC---------CCCCCCCC
Q psy12244 133 LKNAN-----PEACEEQLQTLF----NID---KKSVLRIWHRRCFSCADCHRSLDSTNLNDGL---------AKPDSKAT 191 (257)
Q Consensus 133 ~~~~~-----~~~~~~~~~~~~----~~~---~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~---------~~~~~~~~ 191 (257)
+...+ ++...+++.+++ ++. ..+++++||++|.|++++++.. ..+||.+. +.+.+...
T Consensus 193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~-~~~w~~g~~L~~~l~~i~~~~~~~~ 271 (467)
T 1r5b_A 193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSS-VCPWYQGPSLLEYLDSMTHLERKVN 271 (467)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTT-TCSSCCSCCHHHHHHHCCCCHHHHT
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccc-cCccccchhHHHHHHhCCCCcCCCC
Confidence 75422 233334444433 554 5679999999999999988532 34677652 22222222
Q ss_pred CCCCcchhh---hcceeeEeeecccchhhHHHHHHhh
Q psy12244 192 PYEDIPIAR---IRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 192 ~~~~~~~~~---~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+..+++.+ .++.++.|++.+|....++.+...+
T Consensus 272 ~p~~~~v~~~~~~~G~v~~G~v~~G~l~~gd~v~~~p 308 (467)
T 1r5b_A 272 APFIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMP 308 (467)
T ss_dssp SCCEEECCEEEESSSEEEEEECCBSEEETTEEEEEET
T ss_pred CCcEEEEEEEEeCCCeEEEEEEeeeEEeeCCEEEEcc
Confidence 334455443 2567788999999988888876544
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.7e-25 Score=198.66 Aligned_cols=119 Identities=34% Similarity=0.595 Sum_probs=93.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
++.|||+|+||+++|||||..+|++.++.+... ...+++|+.+.|++||+|+......+.|++ +.+
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~------~~i 102 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD------RVV 102 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT------EEE
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC------EEE
Confidence 478999999999999999999999999887543 234789999999999999999999999988 999
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
+|||||||.||..++.++++.+|++|+||||.. ||+..+++.++.+++++.++
T Consensus 103 NlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 103 NLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQ 181 (548)
T ss_dssp EEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence 999999999999999999999999999999998 99999999988888887764
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-24 Score=190.61 Aligned_cols=193 Identities=20% Similarity=0.218 Sum_probs=132.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeecc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTSI 89 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~ 89 (257)
...+|+++|++|+|||||+++|++..+.+... .++++.|....++++|+|++.....+.+..
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC-
Confidence 46799999999999999999999886655321 356778999999999999998888777655
Q ss_pred cCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCC
Q psy12244 90 LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKN 135 (257)
Q Consensus 90 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~ 135 (257)
+.++|||||||++|..++..+++.+|++|+|+|++. +|+.+
T Consensus 111 -----~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 111 -----ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp -----CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred -----ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 799999999999999999999999999999999964 77765
Q ss_pred CC---HHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCCCC-------------C--CCCCCCC
Q psy12244 136 AN---PEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLA-------------K--PDSKATP 192 (257)
Q Consensus 136 ~~---~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~-------------~--~~~~~~~ 192 (257)
++ .++..+++.+++ ++. ..+++++||++|+|++++.+.+...+||++.. . |......
T Consensus 186 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~ 265 (483)
T 3p26_A 186 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDD 265 (483)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSS
T ss_pred chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCC
Confidence 43 333444444433 443 46799999999999998876543344555421 1 2333344
Q ss_pred CCCcchhhh--------cceeeEeeecccchhhHHHHHHhh
Q psy12244 193 YEDIPIARI--------RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 193 ~~~~~~~~~--------~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+..+++.+. .+.++.|++.+|....++.+...+
T Consensus 266 p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p 306 (483)
T 3p26_A 266 PFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYP 306 (483)
T ss_dssp CCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEET
T ss_pred ceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeC
Confidence 455665443 345678999999988888775544
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=185.98 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=140.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
....+|+++|++|+|||||+++|++..+.+... ++++++|..+.|+++|+|++.....+.+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 356899999999999999999999875443210 234567888899999999998887776655
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++|||||||++|..++..+++.+|++|||+|+++ +|+.
T Consensus 85 ------~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 85 ------YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp ------EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred ------ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 789999999999999999999999999999999972 7776
Q ss_pred CCCH---HHHHHHHHHH---hCCC--ccceEEecccccccccccccccCCCcccCC---------------------CCC
Q psy12244 135 NANP---EACEEQLQTL---FNID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------------------LAK 185 (257)
Q Consensus 135 ~~~~---~~~~~~~~~~---~~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------------------~~~ 185 (257)
+++. +...++++++ +++. ..+++++||++|.|++++.+. .+||++ ++.
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~---~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~ 235 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTN---APWYKGWEKETKAGVVKGKTLLEAIDAIEQ 235 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSS---CTTCCCEEEECSSSEEEESSHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccccc---CchhhcccccccccccchHHHHHHhhccCC
Confidence 4332 3344455443 3543 368999999999999887653 345542 233
Q ss_pred CCCCCCCCCCcchhhh-----cceeeEeeecccchhhHHHHHHhh
Q psy12244 186 PDSKATPYEDIPIARI-----RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 186 ~~~~~~~~~~~~~~~~-----~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
|......+..+++.+. ++.++.|++.+|....++.+...+
T Consensus 236 p~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p 280 (458)
T 1f60_A 236 PSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAP 280 (458)
T ss_dssp CCCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEET
T ss_pred CcccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECC
Confidence 4444444555665543 456778999999988888865444
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=190.87 Aligned_cols=194 Identities=20% Similarity=0.217 Sum_probs=144.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
....+|+++|++|+|||||+++|++..+.+... ...++.|.+..++.+|+|++.....+.+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346799999999999999999998766554331 356778899999999999998888887765
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++|||||||++|..++..+++.+|++|+|||++. +|+.
T Consensus 245 ------~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 245 ------ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp ------CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred ------ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 789999999999999999999999999999999962 7876
Q ss_pred CCC---HHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCCC-------------CC--CCCCCC
Q psy12244 135 NAN---PEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDGL-------------AK--PDSKAT 191 (257)
Q Consensus 135 ~~~---~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~-------------~~--~~~~~~ 191 (257)
+++ .++..+++..++ ++. ..++|++||++|.|++++.......+||.+. +. |.....
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~ 398 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKD 398 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCC
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccc
Confidence 543 233444444433 443 4689999999999999986554444565541 11 222333
Q ss_pred CCCCcchhhh--------cceeeEeeecccchhhHHHHHHhh
Q psy12244 192 PYEDIPIARI--------RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 192 ~~~~~~~~~~--------~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+..+++.+. .+.++.|++.+|....++.+...+
T Consensus 399 ~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p 440 (611)
T 3izq_1 399 DPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYP 440 (611)
T ss_dssp SCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETT
T ss_pred cchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEec
Confidence 4445555443 345678999999998888876544
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.6e-25 Score=200.17 Aligned_cols=194 Identities=19% Similarity=0.299 Sum_probs=106.9
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEee
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYT 87 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~ 87 (257)
....++|+++|++|+|||||+++|++..+.+... ...+++|.++.|+++|+|++.....+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3467899999999999999999998876655432 34678999999999999999888887776
Q ss_pred cccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecC----------c------------------------cCC
Q psy12244 88 SILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN----------Q------------------------VDL 133 (257)
Q Consensus 88 ~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~----------~------------------------~D~ 133 (257)
+ +.++|||||||.+|..++..+++.+|++|||||++ . +|+
T Consensus 254 ~------~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl 327 (592)
T 3mca_A 254 K------KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327 (592)
T ss_dssp -----------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred C------eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 5 78999999999999999999999999999999987 2 777
Q ss_pred CCCC---HHHHHHHHHHHh----CCC--ccceEEecccccccccccccccCCCcccCCC---------CCCCCCCCCCCC
Q psy12244 134 KNAN---PEACEEQLQTLF----NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDGL---------AKPDSKATPYED 195 (257)
Q Consensus 134 ~~~~---~~~~~~~~~~~~----~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~---------~~~~~~~~~~~~ 195 (257)
..++ ++...+++..++ ++. ..+++++||++|.|++++.... .++||.+. ..+......+..
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~-~~~w~~g~~Lle~l~~~~pp~~~~~~p~r 406 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSD-LYKWYKGPTLLSALDQLVPPEKPYRKPLR 406 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCG-GGGTCCSCCHHHHHHTSCCCSCTTTSCCE
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccc-cccccchHHHHHHHHhhccccccccccch
Confidence 6544 344556666655 443 3579999999999998544321 12344331 123333334445
Q ss_pred cchhhh----cceeeEeeecccchhhHHHHHHhh
Q psy12244 196 IPIARI----RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 196 ~~~~~~----~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++.+. .+.++.|++.+|....++.+...+
T Consensus 407 ~~v~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p 440 (592)
T 3mca_A 407 LSIDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVS 440 (592)
T ss_dssp EEEEEEEEETTEEEEEEEEEESEEETTCEEEETT
T ss_pred heeeEEEecCCeEEEEEEEeeeeEccCCEEEEcc
Confidence 655443 456678999999888888776544
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-23 Score=187.21 Aligned_cols=191 Identities=25% Similarity=0.395 Sum_probs=129.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeec
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTS 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 88 (257)
.+.++|+++|++|+|||||+++|++..+.+... ..++++|.++.|+++|+|++.....+.+..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 457899999999999999999999875544321 112467888999999999998877776655
Q ss_pred ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCC
Q psy12244 89 ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLK 134 (257)
Q Consensus 89 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~ 134 (257)
+.++|||||||++|..++..+++.+|++|+|+|+++ +|+.
T Consensus 84 ------~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 84 ------YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp ------CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred ------eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 789999999999999999999999999999999974 7776
Q ss_pred CC--C---HHHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC---------CCCCCCCCCCCCC
Q psy12244 135 NA--N---PEACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG---------LAKPDSKATPYED 195 (257)
Q Consensus 135 ~~--~---~~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~---------~~~~~~~~~~~~~ 195 (257)
+. + ++...+++++++ ++. ..+++++||++|+|+.++++.+ +|+++ ++.|.+....+..
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~---~~~~g~~Ll~~l~~~~~p~~~~~~~~~ 234 (435)
T 1jny_A 158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENM---KWYNGPTLEEYLDQLELPPKPVDKPLR 234 (435)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSC---TTCCSCCHHHHHTTCCCCCCGGGSCCB
T ss_pred CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccccc---ccccchhHHHHHhccCCCCCCCCCCeE
Confidence 52 1 234455555543 433 3679999999999999877642 34432 2223332223344
Q ss_pred cchhh-----hcceeeEeeecccchhhHHHHHHhh
Q psy12244 196 IPIAR-----IRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 196 ~~~~~-----~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++.+ ..+.++.|++.+|....++.+...+
T Consensus 235 ~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p 269 (435)
T 1jny_A 235 IPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMP 269 (435)
T ss_dssp EEEEEEEEETTTEEEEEEECCBSCEETTCEEEEET
T ss_pred EEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECC
Confidence 55443 2456678999999988888776544
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-23 Score=189.27 Aligned_cols=184 Identities=22% Similarity=0.383 Sum_probs=120.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++... ...+|.+..++++|+|++..+..+.+.+ +.++|||||||
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~-------~~~~d~~~~e~~~GiTi~~~~~~~~~~~------~~i~iiDtPGh 83 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIAS-------TSAHDKLPESQKRGITIDIGFSAFKLEN------YRITLVDAPGH 83 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC---------------------------CCCEEEETT------EEEEECCCSSH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCc-------ccccccccccccCccEEecceEEEEECC------EEEEEEECCCh
Confidence 3567999999999999999999975321 2346778889999999998888887765 89999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCC-HHHHHHHHHHHh----CCCcc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNAN-PEACEEQLQTLF----NIDKK 154 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~~~~~~~~----~~~~~ 154 (257)
++|..++..+++.+|++|+|+|+++ +|+.+.+ .+...+++++++ ++...
T Consensus 84 ~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 163 (482)
T 1wb1_A 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS 163 (482)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999999999976 7776422 344555555544 34457
Q ss_pred ceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhh-----hcceeeEeeecccchhhHHHHHHhh
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-----IRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++++||++|+|+++|+++|..... .+...+....+..+++++ .++.++.|++.+|....++.+...+
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~i~---~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p 236 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITTLN---NAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLP 236 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH---HSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTT
T ss_pred eEEEEECcCCCCHHHHHHHHHHhhc---CccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECC
Confidence 8999999999999999998875211 110011122233455443 2455667888888888777765433
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-23 Score=180.25 Aligned_cols=185 Identities=20% Similarity=0.297 Sum_probs=130.2
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc-----------cC--
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI-----------LD-- 91 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-----------~~-- 91 (257)
....++|+++|++|+|||||+++|++. ..+.+..|+++|+|++..+..+.+... +.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~-----------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~ 75 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGV-----------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYC 75 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTC-----------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCC-----------ccccChhhhcCCcEEEEeeeeeeccccccccccccccccccc
Confidence 356789999999999999999999642 235667788899999877665554210 00
Q ss_pred Cc----cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC-H
Q psy12244 92 GE----EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN-P 138 (257)
Q Consensus 92 ~~----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~-~ 138 (257)
+. ...++|||||||++|..++..++..+|++|||+|+++ +|+...+ .
T Consensus 76 g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 76 GHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp CCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH
T ss_pred CcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHH
Confidence 11 2689999999999999999999999999999999984 6765432 2
Q ss_pred HHHHHHHHHHhC---CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhh-------------hc
Q psy12244 139 EACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-------------IR 202 (257)
Q Consensus 139 ~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 202 (257)
.+..+++++++. ....+++++||++|.|+++|+++|... ++.|.+....+..+++.+ .+
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~-----~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~ 230 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF-----IPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLV 230 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH-----SCCCCCCTTSCCEEEEEEEECCSCCC----CCC
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHh-----CCCCccccCCCcEEEEEEEEeccCCCccccCCc
Confidence 234455666553 245689999999999999999988741 111222222222333332 25
Q ss_pred ceeeEeeecccchhhHHHHHHhh
Q psy12244 203 NFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 203 ~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+.++.|++.+|....++.+...+
T Consensus 231 G~v~~g~v~~G~l~~gd~v~~~p 253 (410)
T 1kk1_A 231 GGVLDGSIVQGKLKVGDEIEIRP 253 (410)
T ss_dssp CCEEEEEEEESCEETTCEEEEEE
T ss_pred eEEEEEEEEeCeEeeCCEEEECC
Confidence 56788999999888888775543
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-23 Score=180.40 Aligned_cols=185 Identities=18% Similarity=0.279 Sum_probs=120.2
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc-----------cC--
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI-----------LD-- 91 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-----------~~-- 91 (257)
.....+|+++|++|+|||||+++|++. ..+.+..|+++|+|++..+....+... +.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~-----------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~ 73 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGV-----------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNC 73 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSC-----------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTS
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCC-----------ccccCcccccCCcEEEeccccccccccccccccccccccccc
Confidence 345689999999999999999999642 245677788899999876655443210 00
Q ss_pred Cc----cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC-H
Q psy12244 92 GE----EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN-P 138 (257)
Q Consensus 92 ~~----~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~-~ 138 (257)
+. ...++|||||||++|..++..++..+|++|+|+|+++ +|+.+.+ .
T Consensus 74 g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 74 LAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp CCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTT
T ss_pred CcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHH
Confidence 11 2689999999999999999999999999999999983 7876543 2
Q ss_pred HHHHHHHHHHhC---CCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchh-------------hhc
Q psy12244 139 EACEEQLQTLFN---IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIA-------------RIR 202 (257)
Q Consensus 139 ~~~~~~~~~~~~---~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 202 (257)
.+..+++++++. ....+++++||++|+|+++|+++|... ++.+.+....+..+++. +.+
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~-----i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~ 228 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDF-----IPTPKRDPDATPRMYVARSFDINKPGTEIKDLK 228 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHH-----SCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCC
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHh-----CCCCcccCCCCeEEEEEEEEeecCCCcccccCc
Confidence 234445555542 245689999999999999999988741 11222222222334433 235
Q ss_pred ceeeEeeecccchhhHHHHHHhh
Q psy12244 203 NFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 203 ~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+.++.|.+.+|....++.+...+
T Consensus 229 G~v~~g~v~~G~l~~gd~v~~~p 251 (408)
T 1s0u_A 229 GGVLGGAIIQGVFKVGDEIEIRP 251 (408)
T ss_dssp CCEEEEEEEESCEETTCEEEEEE
T ss_pred eeEEEEEEEECeEecCCEEEEcC
Confidence 66788999999999888876644
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=190.52 Aligned_cols=128 Identities=38% Similarity=0.527 Sum_probs=92.1
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeeccc-CCccEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSIL-DGEEYLL 97 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~-~~~~~~~ 97 (257)
.|.+++|||+|+||.++|||||..+|+..++.+... +...++|..+.|++||+|+......+.|++.. ....+.+
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 456899999999999999999999999888776542 45678999999999999999999999886510 1235899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
+|||||||.||..++..+++.+|++|+|||+.+ ||+..+++....+++++.++
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence 999999999999999999999999999999998 88888888888877776553
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=9.8e-23 Score=179.50 Aligned_cols=187 Identities=21% Similarity=0.310 Sum_probs=131.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccc---cCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVL---SSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~---~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
....+|+++|++|+|||||+++|++...... .......+|..+.|+.+|+|++.....+.+.. ..++||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~------~~~~iiDt 82 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK------RHYSHVDC 82 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS------CEEEEEEC
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC------eEEEEEEC
Confidence 4568999999999999999999987421110 00112246888899999999987665555444 78999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---C
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---N 150 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~ 150 (257)
|||++|..++..+++.+|++|+|+|+++ +|+.... .+...+++++++ +
T Consensus 83 pG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 83 PGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp CCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999986 7775411 122333444433 4
Q ss_pred C--CccceEEeccccccc------------------ccccccccCCCcccCCCCCCCCCCCCCCCcchhh-----hccee
Q psy12244 151 I--DKKSVLRIWHRRCFS------------------CADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-----IRNFS 205 (257)
Q Consensus 151 ~--~~~~~i~iSa~~g~g------------------i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 205 (257)
+ ...+++++||++|.| +++|++.|.. .++.|.+....+..+++.+ .++.+
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~-----~lp~p~~~~~~p~~~~v~~v~~~~~~G~v 237 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDE-----YIPTPVRDVDKPFLMPVEDVFTITGRGTV 237 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHH-----HSCCCCCCCSSCCEEECCEEEEETTTEEE
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHh-----hcCCCCCCCCCCcEEEEEEEEEcCCCceE
Confidence 3 236899999999988 6666666653 1222333333344455433 35677
Q ss_pred eEeeecccchhhHHHHHH
Q psy12244 206 IIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 206 ~~G~v~~Gk~~~~~~i~~ 223 (257)
+.|++.+|....++.+..
T Consensus 238 ~~g~v~~G~l~~gd~v~~ 255 (405)
T 2c78_A 238 ATGRIERGKVKVGDEVEI 255 (405)
T ss_dssp EEEECCBSEEETTCEEEE
T ss_pred EEEEEecccccCCCEEEE
Confidence 889999999988888754
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-22 Score=179.82 Aligned_cols=119 Identities=33% Similarity=0.622 Sum_probs=101.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
++.++|+|+|++|+|||||+++|++..+.+... ......|....++++|+|+......+.+.+ +.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~------~~i 84 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD------YLI 84 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT------EEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC------EEE
Confidence 568999999999999999999999777766322 134567888889999999998888888876 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
+|||||||.+|...+..+++.+|++|+|+|+.. +|+...+..+..+++++.++
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~ 163 (528)
T 3tr5_A 85 NLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILR 163 (528)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred EEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhC
Confidence 999999999999999999999999999999987 88877777777777766654
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-23 Score=180.09 Aligned_cols=186 Identities=20% Similarity=0.273 Sum_probs=129.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
+..+|+++|++|+|||||+++|++........ ...+.+|....|+++|+|++.....+.+.. +.++||||||
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------~~~~iiDtpG 75 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA------RHYAHTDCPG 75 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS------CEEEEEECSS
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC------eEEEEEECCC
Confidence 35789999999999999999998742211100 111235666778889999987665554443 7899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CCC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NID 152 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~~ 152 (257)
|++|..++..+++.+|++|+|+|+++ +|+.... .+...+++++++ ++.
T Consensus 76 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 76 HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999987 6765411 122334444433 442
Q ss_pred --ccceEEeccccccc----------ccccccccCCCcccCCCCCCCCCCCCCCCcchhh-----hcceeeEeeecccch
Q psy12244 153 --KKSVLRIWHRRCFS----------CADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-----IRNFSIIAHVDHGKS 215 (257)
Q Consensus 153 --~~~~i~iSa~~g~g----------i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~G~v~~Gk~ 215 (257)
..+++++||++|.| +++|++.|.. .++.|.+....+..+++.+ .++.++.|++.+|..
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~-----~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l 230 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT-----YIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGIL 230 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH-----HSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEE
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHH-----hCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceE
Confidence 36899999999875 6777777653 1222333333334455443 356778899999998
Q ss_pred hhHHHHHH
Q psy12244 216 TLADRLLE 223 (257)
Q Consensus 216 ~~~~~i~~ 223 (257)
..++.+..
T Consensus 231 ~~gd~v~~ 238 (397)
T 1d2e_A 231 KKGDECEF 238 (397)
T ss_dssp ETTCEEEE
T ss_pred eCCCEEEE
Confidence 88888753
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-22 Score=172.99 Aligned_cols=195 Identities=14% Similarity=0.191 Sum_probs=119.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.+..+|+++|++|+|||||+++|++........ ...............+.+.+.......+.. .......++||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDD-EPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCS-CCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccc-cccccceEEEEECCC
Confidence 456789999999999999999997532111000 000000000001112222111100000000 011126899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC-HHHHHHHHHHHh---CCC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN-PEACEEQLQTLF---NID 152 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~-~~~~~~~~~~~~---~~~ 152 (257)
|++|..++..++..+|++|+|+|+++ +|+.+.+ ..+..+++.+.+ +..
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 164 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE 164 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTT
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999987 6765432 234445555554 334
Q ss_pred ccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhh-------------hcceeeEeeecccchhhHH
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-------------IRNFSIIAHVDHGKSTLAD 219 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~G~v~~Gk~~~~~ 219 (257)
..+++++||++|+|+++|+++|... ++.+......+..+++.+ .++.++.|++.+|....++
T Consensus 165 ~~~ii~vSA~~g~gi~~L~~~l~~~-----l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd 239 (403)
T 3sjy_A 165 NVPIIPVSALHKINIDSLIEGIEEY-----IKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQ 239 (403)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHH-----SCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTC
T ss_pred CCEEEEEECCCCcChHHHHHHHHHh-----CCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCC
Confidence 5689999999999999999988742 112222222333444432 2566788999999998888
Q ss_pred HHHHhhC
Q psy12244 220 RLLEMTG 226 (257)
Q Consensus 220 ~i~~~~g 226 (257)
.+...++
T Consensus 240 ~v~~~p~ 246 (403)
T 3sjy_A 240 EIKVLPG 246 (403)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 7765443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-21 Score=171.04 Aligned_cols=168 Identities=20% Similarity=0.318 Sum_probs=109.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
++|+|+|++|+|||||+|+|++....+ .+..+|+|.+.....+.|.+ ..+.+|||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~-------------v~~~~g~T~d~~~~~~~~~~------~~~~l~DT~G~~~~ 62 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI-------------VEDEEGVTRDPVQDTVEWYG------KTFKLVDTCGVFDN 62 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------------------CCSEEEEEETT------EEEEEEECTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce-------------ecCCCCCccceeeEEEEECC------eEEEEEECCCcccc
Confidence 579999999999999999998654332 12356888888888888876 7899999999764
Q ss_pred --------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHH-HHHhCCC
Q psy12244 108 --------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQL-QTLFNID 152 (257)
Q Consensus 108 --------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~-~~~~~~~ 152 (257)
+...+..+++.||++++|+|+.. +|+. .....++ .+++...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~----~~~~~~~~~~~~~lg 138 (439)
T 1mky_A 63 PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL----REFEREVKPELYSLG 138 (439)
T ss_dssp GGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH----HHHHHHTHHHHGGGS
T ss_pred ccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc----cccHHHHHHHHHhcC
Confidence 34566778899999999999876 4432 1112222 3333222
Q ss_pred ccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
..+++++||++|.|+++|++.+...-..... ...... .......++++|..++||+|+..+++....
T Consensus 139 ~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~---~~~~~~----~~~~~~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 139 FGEPIPVSAEHNINLDTMLETIIKKLEEKGL---DLESKP----EITDAIKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp SCSCEECBTTTTBSHHHHHHHHHHHHHHTTC---CSSSCC----CCCSCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred CCCEEEEeccCCCCHHHHHHHHHHhcccccc---cchhcc----ccccCceEEEECCCCCCHHHHHHHHhCCcc
Confidence 2358999999999999999888632110000 000000 011235799999999999999999987543
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-21 Score=185.19 Aligned_cols=187 Identities=21% Similarity=0.336 Sum_probs=119.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
....+|+++|++|+|||||+++|++........ ...+.+|..+.|+++|+|++.....+.... ..++|||||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~------~kI~IIDTP 367 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPT------RHYAHVDCP 367 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSS------CEEEEEECC
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCC------EEEEEEECC
Confidence 456899999999999999999998742111000 011246778889999999987665555443 789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~ 151 (257)
||++|..++..+++.+|++|+|||+++ +|+.... .+...+++++++ ++
T Consensus 368 GHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 368 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp CHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999987 7775421 223334444433 43
Q ss_pred --CccceEEeccccc--------ccccccccccCCCcccCCCCCCCCCCCCCCCcchhh-----hcceeeEeeecccchh
Q psy12244 152 --DKKSVLRIWHRRC--------FSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIAR-----IRNFSIIAHVDHGKST 216 (257)
Q Consensus 152 --~~~~~i~iSa~~g--------~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~G~v~~Gk~~ 216 (257)
...+++++||++| .|+++|++.|.. .++.|.+....+..+++.+ .++.++.|++.+|...
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~-----~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLk 522 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS-----YIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIK 522 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH-----TSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEE
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhh-----hcCCCccccccceeeeccccccccCCcEEEEEEEeccEEe
Confidence 2468999999999 568888887763 1222333323333444443 3567788999999988
Q ss_pred hHHHHHH
Q psy12244 217 LADRLLE 223 (257)
Q Consensus 217 ~~~~i~~ 223 (257)
.++.+..
T Consensus 523 vGD~V~I 529 (1289)
T 3avx_A 523 VGEEVEI 529 (1289)
T ss_dssp TTCEEEE
T ss_pred cCCEEEE
Confidence 8888754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-22 Score=174.82 Aligned_cols=164 Identities=18% Similarity=0.285 Sum_probs=103.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc--
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV-- 106 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-- 106 (257)
++|+++|++|+|||||+|+|++....+ .+...|+|.+.....+.+.+ ..+.+|||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-------------v~~~~g~T~d~~~~~~~~~~------~~~~l~DT~G~~~~ 64 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI-------------VEDTPGVTRDRIYSSAEWLN------YDFNLIDTGGIDIG 64 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------------------CEEEECTTCS------SCCEEEC-------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee-------------ecCCCCCccceEEEEEEECC------ceEEEEECCCCCCc
Confidence 579999999999999999997643322 12356777776666666654 679999999996
Q ss_pred ------ccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCcc
Q psy12244 107 ------DFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ------~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
.+...+..++..+|++|+|+|+.. +|+... ...+.+++.....
T Consensus 65 ~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~-----~~~~~~~~~lg~~ 139 (436)
T 2hjg_A 65 DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM-----RANIYDFYSLGFG 139 (436)
T ss_dssp --CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC----------CCCSSGGGSSC
T ss_pred chhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccc-----hhhHHHHHHcCCC
Confidence 566777888999999999999986 444321 1111122222223
Q ss_pred ceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGT 227 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~ 227 (257)
+++++||++|.|+++|++.+..... +. +.. . ......+++++|+.+.||+++.++++.....
T Consensus 140 ~~~~iSA~~g~gv~~L~~~i~~~l~-~~---~~~-~------~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~ 201 (436)
T 2hjg_A 140 EPYPISGTHGLGLGDLLDAVAEHFK-NI---PET-K------YNEEVIQFCLIGRPNVGKSSLVNAMLGEERV 201 (436)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHTGG-GC---CSS-C------CCTTCEEEEEECSTTSSHHHHHHHHHTSTTE
T ss_pred CeEEEeCcCCCChHHHHHHHHHhcC-cc---ccc-c------ccccCcEEEEEcCCCCCHHHHHHHHhCCCce
Confidence 6899999999999999988863211 11 100 0 0122467999999999999999999876543
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-20 Score=170.72 Aligned_cols=126 Identities=38% Similarity=0.539 Sum_probs=102.5
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecc-cCCccEEEE
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSI-LDGEEYLLN 98 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~~~~~~~~~ 98 (257)
+.++.++|+|+|++|+|||||+++|++..+.+... ....++|+.+.|+++|+|+......+.|... .++..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34678999999999999999999999876655432 3456789999999999999888777777531 134458999
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
|||||||.+|...+..+++.+|++|+|+|++. +|+...+.++..+++++.+
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l 162 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRL 162 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999987 7877766666666666554
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-21 Score=174.00 Aligned_cols=173 Identities=19% Similarity=0.280 Sum_probs=115.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.++++|+++|++|+|||||+++|+..... ....+|+|++.....+.+.+ ..++|||||||
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~--------------~~e~~GIT~~i~~~~v~~~~------~~i~~iDTPGh 61 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA--------------SGEAGGITQHIGAYHVETEN------GMITFLDTPGH 61 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHS--------------BTTBCCCCCCSSCCCCCTTS------SCCCEECCCTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCc--------------cccCCCeeEeEEEEEEEECC------EEEEEEECCCc
Confidence 46788999999999999999999763211 11235777776665555543 57899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHH--h--CC-Ccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTL--F--NI-DKK 154 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~--~--~~-~~~ 154 (257)
++|..++..+++.+|++|||+|+++ +|+..++.++..+++.+. + .+ ...
T Consensus 62 e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~ 141 (501)
T 1zo1_I 62 AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGES 141 (501)
T ss_dssp TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSC
T ss_pred HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCc
Confidence 9999999999999999999999986 777654433222222110 0 01 125
Q ss_pred ceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHH
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i 221 (257)
+++++||++|.|+++|+++|.... +.+. +......+.... ....++.+..|.+.+|....++.+
T Consensus 142 ~~v~vSAktG~gI~eLle~I~~~~--~~~~-~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v 210 (501)
T 1zo1_I 142 QFVHVSAKAGTGIDELLDAILLQA--EVLE-LKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIV 210 (501)
T ss_dssp EEEECCTTTCTTCTTHHHHTTTTC--CCST-TTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEE
T ss_pred cEEEEeeeeccCcchhhhhhhhhh--hhhc-cccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEE
Confidence 799999999999999999987431 1111 111111111111 233466777788888877766654
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=161.26 Aligned_cols=143 Identities=26% Similarity=0.428 Sum_probs=103.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC--------CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--------GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.+.++|+|+|++|+|||||+++|++..+.+... ....+.|+.+.++.+|+|+......+.+.+ +.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~------~~i 84 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD------CLV 84 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT------EEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC------eEE
Confidence 467899999999999999999999866554221 124567888889999999998888888876 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
+|||||||.+|...+..+++.+|++|+|+|+.. +|+...+..+..+++++.++.
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~ 164 (529)
T 2h5e_A 85 NLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKI 164 (529)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred EEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999987 888877777888888888876
Q ss_pred Cccc--eEEeccccccccccccccc
Q psy12244 152 DKKS--VLRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 152 ~~~~--~i~iSa~~g~gi~~l~~~i 174 (257)
...+ +...|++++.|+.++++..
T Consensus 165 ~~~~~~~pi~sa~~~~Gv~dl~~~~ 189 (529)
T 2h5e_A 165 GCAPITWPIGCGKLFKGVYHLYKDE 189 (529)
T ss_dssp EEEESEEEESCGGGCCEEEETTTTE
T ss_pred CccceecceecccCcceeeehhhhh
Confidence 5443 2336899999998887644
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-19 Score=165.84 Aligned_cols=149 Identities=31% Similarity=0.450 Sum_probs=109.1
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEE
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLN 98 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 98 (257)
++.++.++|+|+|++|+|||||+++|++..+.+... ......|..+.|+++++|+......+.+.+ +.++
T Consensus 5 ~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~------~~i~ 78 (693)
T 2xex_A 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG------HRVN 78 (693)
T ss_dssp SCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT------EEEE
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC------eeEE
Confidence 345678999999999999999999999876655321 234677888889999999998888888866 8999
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCC
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
|||||||.+|...+..+++.+|++|+|+|+.. +|+...+..+..+++++.++..
T Consensus 79 liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~ 158 (693)
T 2xex_A 79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQAN 158 (693)
T ss_dssp EECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCC
T ss_pred EEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999987 8888878888899999988764
Q ss_pred cc-ceEEecccccccccccccccCCCcc
Q psy12244 153 KK-SVLRIWHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 153 ~~-~~i~iSa~~g~gi~~l~~~i~~~~~ 179 (257)
.. .++|+|+ |.|++.+.+.+...+|
T Consensus 159 ~~~~~ipisa--~~~~~~l~d~l~~~~~ 184 (693)
T 2xex_A 159 AAPIQLPIGA--EDEFEAIIDLVEMKCF 184 (693)
T ss_dssp EEESEEEECC--GGGCCEEEETTTTEEE
T ss_pred ceeEEeeccc--CCCcceeeeeecceeE
Confidence 33 3689998 8889888888765444
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-20 Score=167.88 Aligned_cols=178 Identities=17% Similarity=0.259 Sum_probs=108.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC-
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG- 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG- 104 (257)
.+.++|+|+|++|+|||||+|+|++....+ ....+|+|.+.....+.+.+ ..+.+|||||
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-------------v~~~~g~t~~~~~~~~~~~~------~~~~liDT~G~ 81 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-------------VEDTPGVTRDRIYSSAEWLN------YDFNLIDTGGI 81 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------------------CEEEECTTCS------SCCEEECCCC-
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-------------cCCCCCcceeEEEEEEEECC------ceEEEEECCCC
Confidence 346789999999999999999996543221 22345777776666655544 6899999999
Q ss_pred -------CcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 105 -------HVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 105 -------~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
++.+...+..+++.+|++|+|+|+.. +|+.+ ......+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~-----~~~~~~e~~~l 156 (456)
T 4dcu_A 82 DIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE-----MRANIYDFYSL 156 (456)
T ss_dssp -----CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--------------CCSGGG
T ss_pred CCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchh-----hhhhHHHHHHc
Confidence 56677788888999999999999886 33321 11222222222
Q ss_pred CccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS 231 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~ 231 (257)
...+++++||++|.|+++|++.+..... . ..... ......+++++|+.+.||+++..+++.........
T Consensus 157 g~~~~~~iSA~~g~gv~~L~~~i~~~l~-~----~~~~~------~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~ 225 (456)
T 4dcu_A 157 GFGEPYPISGTHGLGLGDLLDAVAEHFK-N----IPETK------YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN 225 (456)
T ss_dssp SSSSEEECCTTTCTTHHHHHHHHHTTGG-G----SCSSC------CCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC
T ss_pred CCCceEEeecccccchHHHHHHHHhhcc-c----ccccc------cccccceeEEecCCCCCHHHHHHHHhCCCccccCC
Confidence 2335689999999999999988763211 0 00000 01234678999999999999999998655433333
Q ss_pred CCccccC
Q psy12244 232 GSSQVLD 238 (257)
Q Consensus 232 g~~~~~d 238 (257)
..+++.|
T Consensus 226 ~~gtt~~ 232 (456)
T 4dcu_A 226 VAGTTRD 232 (456)
T ss_dssp ------C
T ss_pred CCCeEEE
Confidence 3334444
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=166.66 Aligned_cols=122 Identities=25% Similarity=0.330 Sum_probs=98.8
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.....+.++|+|+|++|+|||||+++|++..+.+... +.....|....++.+++|+......+.+.. +.+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~------~~~ 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG------HRV 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT------EEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC------EEE
Confidence 3445678899999999999999999999766543222 234567888888899999888777777665 899
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
+|||||||.+|...+..+++.+|++++|+|+.. +|+. .+..+..+++++.++
T Consensus 77 nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 77 FLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG 154 (665)
T ss_dssp EEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC
T ss_pred EEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC
Confidence 999999999999999999999999999999887 8887 777777777776655
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-21 Score=165.67 Aligned_cols=166 Identities=13% Similarity=0.141 Sum_probs=114.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+++|+++|++|+|||||+++|+ ++|+|++.....+.+.. +.++|||||||++
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~----------------------~~giTi~~~~~~~~~~~------~~i~iiDtPGh~~ 72 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG----------------------KKGTSSDITMYNNDKEG------RNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS----------------------EEEEESSSEEEEECSSS------SEEEEEECTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHH----------------------hCCEEEEeeEEEEecCC------eEEEEEECCChHH
Confidence 3489999999999999999984 45778887776666554 6899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC-HHHHHHHHHHHhC---CCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN-PEACEEQLQTLFN---IDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~-~~~~~~~~~~~~~---~~~~~ 155 (257)
|..++..+++.+|++|+|+| +. +|+ +.+ .++..+++++++. ....|
T Consensus 73 f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ 150 (370)
T 2elf_A 73 TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWE 150 (370)
T ss_dssp CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCE
T ss_pred HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceE
Confidence 99999999999999999999 64 444 211 2334456666653 33468
Q ss_pred eEE--ecccc---cccccccccccCCCcccCCCCCCCCC-CCCCCCcchhh-----hcceeeEeeecccchhhHHHHHHh
Q psy12244 156 VLR--IWHRR---CFSCADCHRSLDSTNLNDGLAKPDSK-ATPYEDIPIAR-----IRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 156 ~i~--iSa~~---g~gi~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
+++ +||++ |.|+++|++.|...... ...++.. ...+..+++.+ .++.++.|++.+|....++.+...
T Consensus 151 ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~--~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~ 228 (370)
T 2elf_A 151 CISLNTNKSAKNPFEGVDELKARINEVAEK--IEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIF 228 (370)
T ss_dssp EEECCCCTTSSSTTTTHHHHHHHHHHHHHH--HHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEE
T ss_pred EEecccccccCcCCCCHHHHHHHHHhhccc--cccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEEC
Confidence 999 99999 99999999887643110 0000000 00011111222 345677888999988888876543
Q ss_pred h
Q psy12244 225 T 225 (257)
Q Consensus 225 ~ 225 (257)
+
T Consensus 229 p 229 (370)
T 2elf_A 229 P 229 (370)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-19 Score=143.54 Aligned_cols=129 Identities=15% Similarity=0.219 Sum_probs=90.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|||||||+++|+... +..+..+.+..+.....+.. ++..+.+.||||+|++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~--------------f~~~~~~Tig~d~~~k~~~~----~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDS--------------FDNTYQATIGIDFLSKTMYL----EDRTIRLQLWDTAGLE 73 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC--------------CC----------CEEEEEEC----SSCEEEEEEECCSCTT
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCC--------------CCCCcCCccceEEEEEEEEe----cceEEEEEEEECCCch
Confidence 44689999999999999999997522 11122232333332222222 5566899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+|...+..+++.+|++++|+|.++ +|+...+ ..+..+++.+.++ +
T Consensus 74 ~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~---~ 150 (216)
T 4dkx_A 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN---V 150 (216)
T ss_dssp TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---C
T ss_pred hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC---C
Confidence 999999999999999999999998 6764322 1222334444445 4
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.||+++|+.|.+
T Consensus 151 ~~~e~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 151 MFIETSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHH
T ss_pred eeEEEeCCCCcCHHHHHHHHHH
Confidence 6999999999999999988763
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=162.48 Aligned_cols=147 Identities=31% Similarity=0.449 Sum_probs=105.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
.++.++|+|+|++|+|||||+++|+...+.+... .....+|+...|+++++|+......+.+.. +.++||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~------~~i~li 82 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD------HRINII 82 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT------EEEEEE
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC------eEEEEE
Confidence 4678999999999999999999999776654322 235678888999999999998888888766 899999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCcc
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
|||||.+|...+..+++.+|++|+|+|+.. +|+...+..+..+++++.++....
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~ 162 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPV 162 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEE
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999987 898888888999999998876543
Q ss_pred c-eEEecccccccccccccccCCCcc
Q psy12244 155 S-VLRIWHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 155 ~-~i~iSa~~g~gi~~l~~~i~~~~~ 179 (257)
+ .+|+|+ +.+++.+.+.+...+|
T Consensus 163 ~~~~Pi~~--~~~~~g~~d~~~~~~~ 186 (691)
T 1dar_A 163 VMQLPIGR--EDTFSGIIDVLRMKAY 186 (691)
T ss_dssp ECEEEESC--GGGCCEEEETTTTEEE
T ss_pred ceeccccC--CCcccchhhhhcceee
Confidence 3 689998 7777777777665444
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-21 Score=174.08 Aligned_cols=173 Identities=22% Similarity=0.249 Sum_probs=115.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
++++|+++|++|+|||||+++|++... .....+++|.+.....+.+.. ...++|||||||+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~--------------~~~~~~giT~~i~~~~v~~~~-----g~~i~~iDTPGhe 63 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV--------------AAMEAGGITQHIGAFLVSLPS-----GEKITFLDTPGHA 63 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH--------------HHSSSCCBCCCTTSCCBCSSC-----SSCCBCEECSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--------------ccccCCceeEEEeEEEEEeCC-----CCEEEEEECCChH
Confidence 567899999999999999999976432 122345677776666555421 2478999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHh----CC-Cccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLF----NI-DKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~----~~-~~~~ 155 (257)
+|..++..+++.+|++|||+|+++ +|+.+.+.+...+++...- .+ ...+
T Consensus 64 ~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~ 143 (537)
T 3izy_P 64 AFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQ 143 (537)
T ss_dssp CTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEE
T ss_pred HHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCce
Confidence 999999999999999999999987 7776554433333443321 11 1357
Q ss_pred eEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcc-----hhhhcceeeEeeecccchhhHHHH
Q psy12244 156 VLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIP-----IARIRNFSIIAHVDHGKSTLADRL 221 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i 221 (257)
++++||++|.|+++|++.|..+. +.+. +......+...+ ..+.++.+..|.+.+|....++.+
T Consensus 144 iv~vSAktG~GI~eLle~I~~l~--~~~~-~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 144 AVHVSALTGENMMALAEATIALA--EMLE-LKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp ECCCCSSSSCSSHHHHHHHHHHH--TTCC-CCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred EEEEECCCCCCchhHHHHHHHhh--hccc-ccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 99999999999999999887432 1111 111111122222 223455666777777766665544
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=137.83 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=91.2
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+.....+|+++|.+|+|||||+++|++... .......++.+.....+.+ ++....+.|||||
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~----~~~~~~l~l~Dt~ 83 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTF--------------CEACKSTVGVDFKIKTVEL----RGKKIRLQIWDTA 83 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC----------------------CCTTEEEEEEEEEE----TTEEEEEEEEEEC
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCC--------------CcCCCCccceeEEEEEEEE----CCeEEEEEEEeCC
Confidence 345678999999999999999999954221 1112233333433334443 3445789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~ 151 (257)
|+++|...+...++.+|++|+|+|+++ +|+.... ..+..+++.+. .
T Consensus 84 G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~--~ 161 (192)
T 2il1_A 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ--I 161 (192)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT--S
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHh--c
Confidence 999999999999999999999999987 5653221 11222233332 2
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 162 ~~~~~~~~SA~~g~gi~~l~~~l~ 185 (192)
T 2il1_A 162 TGMRFCEASAKDNFNVDEIFLKLV 185 (192)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 345799999999999999998775
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=137.09 Aligned_cols=130 Identities=17% Similarity=0.241 Sum_probs=95.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+++|+...... +..++.+.+.....+.+ ++..+.+.||||||+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE--------------SYISTIGVDFKIRTIEL----DGKTIKLQIWDTAGQ 75 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS--------------CCCCCSSEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCcccceEEEEEEEE----CCEEEEEEEEECCCc
Confidence 467899999999999999999997633211 11233444444444444 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++++|+|+++ +|+.... .....+++...++
T Consensus 76 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 152 (196)
T 3tkl_A 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG--- 152 (196)
T ss_dssp GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT---
T ss_pred HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC---
Confidence 9999889999999999999999987 6775432 1233344444444
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 153 ~~~~~~Sa~~g~gv~~l~~~l~~ 175 (196)
T 3tkl_A 153 IPFLETSAKNATNVEQSFMTMAA 175 (196)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988874
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-19 Score=141.38 Aligned_cols=131 Identities=23% Similarity=0.309 Sum_probs=93.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+.++|+++|.+|+|||||+++|++..... ...++++.+.....+.+.+ ..+.+|||||+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~------~~~~l~Dt~G~ 65 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE--------------QEAGGITQHIGAYQVTVND------KKITFLDTPGH 65 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC--------------SSCCSSSTTCCCCEEEETT------EEEEESCCCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc--------------CCCCceeEeeeEEEEEeCC------ceEEEEECCCC
Confidence 456789999999999999999997532211 1122334344444455544 67889999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC-----Ccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI-----DKK 154 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~-----~~~ 154 (257)
++|...+..++..+|++++|+|+++ +|+...+.++..+.+...-.. ...
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 66 EAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp SSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSE
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcc
Confidence 9988777778889999999999876 787665544444444321111 114
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.|+++++++|..
T Consensus 146 ~~~~~Sa~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 146 IFCKLSAKTKEGLDHLLEMILL 167 (178)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHH
Confidence 7999999999999999988864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=136.93 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=90.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... ....|+......+.+.. ..+.||||||+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~------~~~~l~Dt~G~ 77 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNE----------------DMIPTVGFNMRKITKGN------VTIKLWDIGGQ 77 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCC----------------SCCCCCSEEEEEEEETT------EEEEEEEECCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCC----------------ccCCCCceeEEEEEeCC------EEEEEEECCCC
Confidence 467899999999999999999997633210 01112222223333333 88999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHHHH-hCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQTL-FNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~~~-~~~~ 152 (257)
++|...+..+++.+|++|+|+|+++ +|+... +.++..+.+... +...
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 157 (188)
T 1zd9_A 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDR 157 (188)
T ss_dssp HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSS
T ss_pred HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccC
Confidence 9998888889999999999999976 676543 223333322211 1123
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 158 ~~~~~~~SA~~g~gv~~l~~~l~~ 181 (188)
T 1zd9_A 158 EICCYSISCKEKDNIDITLQWLIQ 181 (188)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988863
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=135.17 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=91.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||+++|++.... ....+.++.+.....+.+ ++....+.+|||||
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G 65 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFD--------------TQLFHTIGVEFLNKDLEV----DGHFVTMQIWDTAG 65 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCC--------------C----CCSEEEEEEEEEE----TTEEEEEEEEECCC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCceeeeEEEEEEEE----CCEEEEEEEEeCCC
Confidence 346789999999999999999999763211 111223333333333333 34457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCC--CHHHHHHHHHHH
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNA--NPEACEEQLQTL 148 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~--~~~~~~~~~~~~ 148 (257)
+++|...+...++.+|++++|+|+++ +|+.+. ..++.. ++.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~-~~~~~ 144 (177)
T 1wms_A 66 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ-AWCRD 144 (177)
T ss_dssp CGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHH-HHHHH
T ss_pred chhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHH-HHHHh
Confidence 99999998899999999999999987 665421 122222 22221
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|+++++++|..
T Consensus 145 --~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 145 --NGDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp --TTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred --cCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 23457999999999999999988763
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=147.13 Aligned_cols=134 Identities=18% Similarity=0.235 Sum_probs=96.0
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
++...-.|+++|++|+|||||+|+|++....+... ..+.|.......+... ...++.|||||
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~-------------~~~tT~~~~~~~~~~~-----~~~~i~lvDTP 67 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISP-------------KAGTTRMRVLGVKNIP-----NEAQIIFLDTP 67 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-------------SSCCCCSCEEEEEEET-----TTEEEEEEECC
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCC-------------CCCceeeEEEEEEecC-----CCCeEEEEECc
Confidence 34556789999999999999999998755433221 2344444434444443 13889999999
Q ss_pred CCccc----------HHHHHHhhhhcceEEEEEecCc---------------------------cCCC-C-CCHHHHHHH
Q psy12244 104 GHVDF----------SNEVTRSLAACQGVVLLIDANQ---------------------------VDLK-N-ANPEACEEQ 144 (257)
Q Consensus 104 G~~~~----------~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~-~-~~~~~~~~~ 144 (257)
|+.++ ...+..++..+|++++|+|+++ +|+. . .......+.
T Consensus 68 G~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~ 147 (308)
T 3iev_A 68 GIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDE 147 (308)
T ss_dssp CCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHH
T ss_pred CCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHH
Confidence 99653 3667778899999999999986 6765 2 224555566
Q ss_pred HHHHhCCCccceEEecccccccccccccccCC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.+.++ ...+++++||++|.|++++++.|..
T Consensus 148 l~~~~~-~~~~i~~vSA~~g~gv~~L~~~l~~ 178 (308)
T 3iev_A 148 IHKKHP-ELTEIVPISALKGANLDELVKTILK 178 (308)
T ss_dssp HHHHCT-TCCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHhcc-CCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 666553 2356999999999999999988764
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-19 Score=138.52 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=80.6
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||+++|++..... ...+.++.+.....+.+. .+....+.+|||||
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G 67 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQ--------------QYKATIGADFLTKEVTVD---GDKVATMQVWDTAG 67 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCT--------------TC---CCCSCEEEEECCS---SSCCEEEEEECCC-
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCc--------------ccCCccceEEEEEEEEEc---CCcEEEEEEEECCC
Confidence 3567899999999999999999997633210 111222223223333332 13457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC---HHHHHHHHHH
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN---PEACEEQLQT 147 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~---~~~~~~~~~~ 147 (257)
+++|...+...++.+|++++|+|+++ +|+.... ..+...++.+
T Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~ 147 (182)
T 1ky3_A 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK 147 (182)
T ss_dssp ---------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH
T ss_pred ChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH
Confidence 99999888889999999999999986 5653211 1222223332
Q ss_pred HhCCCccceEEecccccccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. ....+++++||++|.|+++++++|..
T Consensus 148 ~--~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (182)
T 1ky3_A 148 S--LGDIPLFLTSAKNAINVDTAFEEIAR 174 (182)
T ss_dssp H--TTSCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred h--cCCCeEEEEecCCCCCHHHHHHHHHH
Confidence 1 23457999999999999999988763
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=136.43 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=94.3
Q ss_pred CCCCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCc
Q psy12244 14 DSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGE 93 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~ 93 (257)
+..+..+.+...+...+|+++|.+|+|||||+++|++...... .....+.+.....+.+ .+.
T Consensus 8 ~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~----~~~ 69 (189)
T 2gf9_A 8 HHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTVYR----HDK 69 (189)
T ss_dssp ------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------CCCCCCCEEEEEEEEE----TTE
T ss_pred cccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCC--------------cCCceeEEEEEEEEEE----CCe
Confidence 3344444455556788999999999999999999976432110 0111122222222222 334
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHH
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEAC 141 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~ 141 (257)
...+.||||||+.+|...+..+++.+|++++|+|+++ +|+.... ..+.
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 149 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAED 149 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHH
Confidence 5789999999999988888888999999999999976 6664321 1223
Q ss_pred HHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++.+.++ .+++++||++|.|+++++++|..
T Consensus 150 ~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~ 181 (189)
T 2gf9_A 150 GRRLADDLG---FEFFEASAKENINVKQVFERLVD 181 (189)
T ss_dssp HHHHHHHHT---CEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHcC---CeEEEEECCCCCCHHHHHHHHHH
Confidence 334444444 36999999999999999988763
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=136.39 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=86.6
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
+.++..+..+|+++|++|+|||||+++|+..... .........+.....+.+ ++....+.||
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~l~i~ 82 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFR--------------ENISATLGVDFQMKTLIV----DGERTVLQLW 82 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEE----TTEEEEEEEE
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCC--------------ccCCCCccceeEEEEEEE----CCEEEEEEEE
Confidence 3455567789999999999999999999763211 011111122222222333 3445789999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCC------CC--HHHHH
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKN------AN--PEACE 142 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~------~~--~~~~~ 142 (257)
||||+++|...+...++.+|++|+|+|+++ +|+.. .. ..+..
T Consensus 83 Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~ 162 (199)
T 2p5s_A 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFG 162 (199)
T ss_dssp ECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHH
T ss_pred ECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHH
Confidence 999999999999999999999999999987 55421 00 11222
Q ss_pred HHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 143 EQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 143 ~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.+...++ .+++++||++|.|+++++++|.
T Consensus 163 ~~~~~~~~---~~~~~~SA~~g~gv~el~~~l~ 192 (199)
T 2p5s_A 163 EKLAMTYG---ALFCETSAKDGSNIVEAVLHLA 192 (199)
T ss_dssp HHHHHHHT---CEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHcC---CeEEEeeCCCCCCHHHHHHHHH
Confidence 23333333 4699999999999999988776
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=130.68 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=87.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|+...-.. ...|+......+.+.. ..+.+|||||+++|.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~-----------------~~~t~~~~~~~~~~~~------~~~~i~Dt~G~~~~~ 58 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPTIGFNVETVEYKN------ISFTVWDVGGQDKIR 58 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC-----------------CCCCSSCCEEEEECSS------CEEEEEECCCCGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc-----------------ccCcCceeEEEEEECC------EEEEEEEcCCChhhH
Confidence 69999999999999999997643210 0113233333344433 789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~~~~~~ 156 (257)
..+...++.+|++++|+|+++ +|+.+.. .++..+.+... +.....++
T Consensus 59 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (164)
T 1r8s_A 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 138 (164)
T ss_dssp HHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEE
Confidence 988899999999999999987 6765432 23333222211 11223468
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.|+++++++|.
T Consensus 139 ~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 139 QATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp EECBTTTTBTHHHHHHHHH
T ss_pred EEcccCCCcCHHHHHHHHH
Confidence 9999999999999998876
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=132.42 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=91.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+..... ....|+......+.+.. ..+.+|||||+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~~~Dt~G~ 61 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-----------------TTIPTIGFNVETVTYKN------LKFQVWDLGGL 61 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-----------------CCCCCSSEEEEEEEETT------EEEEEEEECCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-----------------CcCCcCccceEEEEECC------EEEEEEECCCC
Confidence 34578999999999999999999763211 01122222333444444 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~~ 152 (257)
++|...+..+++.+|++++|+|+++ +|+.... ..+..+.+... +...
T Consensus 62 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (171)
T 1upt_A 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDR 141 (171)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTS
T ss_pred hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCC
Confidence 9998888889999999999999986 6765432 33333333221 2222
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (171)
T 1upt_A 142 KWQIFKTSATKGTGLDEAMEWLVE 165 (171)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ceEEEECcCCCCcCHHHHHHHHHH
Confidence 347999999999999999988763
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-18 Score=132.08 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=85.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|++|+|||||+++|++....... ..++++.+.....+.+ ++....+.+|||||+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------~~~t~~~~~~~~~~~~----~~~~~~~~~~Dt~G~ 70 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-------------FISTVGIDFRNKVLDV----DGVKVKLQMWDTAGQ 70 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-------------CCCCCSCEEEEEEEEE----TTEEEEEEEEECCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC-------------cCCceeeEEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 46789999999999999999999764321110 1122222322222222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+...++.+|++++|+|+++ +|+.... ..+..+.+.+.++
T Consensus 71 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 147 (180)
T 2g6b_A 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG--- 147 (180)
T ss_dssp --------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcC---
Confidence 9999888899999999999999987 7775432 1222333444344
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~ 170 (180)
T 2g6b_A 148 LPFMETSAKTGLNVDLAFTAIAK 170 (180)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988763
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=134.71 Aligned_cols=131 Identities=16% Similarity=0.227 Sum_probs=89.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|.+|+|||||+++|+...- ..+....++.+.....+.+ ++....+.||||||+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~ 88 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF--------------SERQGSTIGVDFTMKTLEI----QGKRVKLQIWDTAGQ 88 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------------------CEEEEEEEE----TTEEEEEEEECCTTC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC--------------CCCCCCCcceEEEEEEEEE----CCEEEEEEEEECCCc
Confidence 4568999999999999999999976321 1111222222222333333 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++|+|+|+++ +|+.... ..+..+++.+.++.
T Consensus 89 ~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-- 166 (201)
T 2hup_A 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDI-- 166 (201)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC--
T ss_pred HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCC--
Confidence 9999999999999999999999987 6664321 11222233333332
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 167 ~~~~~~SA~~g~gi~~l~~~l~~ 189 (201)
T 2hup_A 167 LCAIETSAKDSSNVEEAFLRVAT 189 (201)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 26999999999999999988863
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=136.87 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=92.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|.+|+|||||+++|+..... ......++.+.....+.+ ++....+.||||||+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFP--------------PGQGATIGVDFMIKTVEI----NGEKVKLQIWDTAGQ 85 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC--------------TTCCCCCSEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCC--------------CCCCCccceeEEEEEEEE----CCEEEEEEEEECCCc
Confidence 46789999999999999999999763221 011122333333333333 345578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++++|+|+++ +|+.... ..+..+++....+
T Consensus 86 ~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--- 162 (201)
T 2ew1_A 86 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD--- 162 (201)
T ss_dssp GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC---
Confidence 9999989999999999999999986 5653211 1222223333333
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~ 185 (201)
T 2ew1_A 163 MYYLETSAKESDNVEKLFLDLAC 185 (201)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988763
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=132.97 Aligned_cols=129 Identities=18% Similarity=0.207 Sum_probs=89.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|++|+|||||+++|++.... ....++++.+.....+.+ ++....+.+|||||++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFN--------------PSFITTIGIDFKIKTVDI----NGKKVKLQIWDTAGQE 63 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCC--------------C-------CCEEEEEEES----SSCEEEEEEECCTTGG
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCC--------------CCCCCccceeEEEEEEEE----CCEEEEEEEEeCCCCh
Confidence 3578999999999999999999763321 111222232322233333 3445789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC-HHHHHHHHHHHhCCCccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN-PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~ 155 (257)
++...+...++.+|++++|+|+++ +|+.... ..+..+++.+.++ .+
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~ 140 (170)
T 1g16_A 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG---IP 140 (170)
T ss_dssp GTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT---CC
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC---Ce
Confidence 988888888999999999999986 6763322 2223334444444 36
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|++++++.|..
T Consensus 141 ~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 141 FIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999988763
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=146.10 Aligned_cols=129 Identities=21% Similarity=0.210 Sum_probs=90.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+|+|++....+... ..+.|.......+.+.. .++.||||||+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-------------~~~tTr~~i~~i~~~~~------~~l~l~DTpG~ 65 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-------------RPQTTRKRLRGILTEGR------RQIVFVDTPGL 65 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-------------SSCCCCSCEEEEEEETT------EEEEEEECCCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecC-------------CCCceeEEEEEEEEeCC------cEEEEecCccc
Confidence 356689999999999999999998755433221 12233332222233333 78999999999
Q ss_pred cc--------cHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 106 VD--------FSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 106 ~~--------~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
.+ |......+++.+|++++|+|+++ +|+...+. ...+.+++.
T Consensus 66 ~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~- 143 (301)
T 1wf3_A 66 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE-EAMKAYHEL- 143 (301)
T ss_dssp CCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH-HHHHHHHHT-
T ss_pred cchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH-HHHHHHHHh-
Confidence 87 56677788999999999999976 45433211 133444443
Q ss_pred CCCccceEEecccccccccccccccCC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|++++++.|..
T Consensus 144 -~~~~~~~~iSA~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 144 -LPEAEPRMLSALDERQVAELKADLLA 169 (301)
T ss_dssp -STTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred -cCcCcEEEEeCCCCCCHHHHHHHHHH
Confidence 33456899999999999999988864
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-18 Score=133.12 Aligned_cols=130 Identities=13% Similarity=0.143 Sum_probs=91.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... ...+.++.+.....+.+ ++....+.||||||+
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 71 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE--------------FQESTIGAAFFSQTLAV----NDATVKFEIWDTAGQ 71 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTT--------------TSCCCSCCSEEEEEEEE----TTEEEEEEEEECCCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC--------------cCCCCceeEEEEEEEEE----CCEEEEEEEEeCCCC
Confidence 456789999999999999999997632211 11122222222222333 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
.+|...+...++.+|++++|+|+++ +|+.... ..+..+++.+..+
T Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~--- 148 (181)
T 2efe_B 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENG--- 148 (181)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT---
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcC---
Confidence 9999888889999999999999987 6764322 1222223333333
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~ 171 (181)
T 2efe_B 149 LFFMETSAKTATNVKEIFYEIAR 171 (181)
T ss_dssp CEEEECCSSSCTTHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999998873
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=135.58 Aligned_cols=134 Identities=20% Similarity=0.238 Sum_probs=89.3
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
..+..+..+|+++|.+|+|||||+++|+...... .....++.+.....+.+ ++....+.|||
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~D 75 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD--------------RTEATIGVDFRERAVDI----DGERIKIQLWD 75 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCS--------------SCCCCCSCCEEEEEEEE----TTEEEEEEEEE
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCCcceEEEEEEEEE----CCEEEEEEEEE
Confidence 3344567899999999999999999997633211 01112222222223333 34457899999
Q ss_pred CCCCcccH-HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHH
Q psy12244 102 TPGHVDFS-NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQT 147 (257)
Q Consensus 102 tpG~~~~~-~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~ 147 (257)
|||+++|. ..+..+++.+|++|+|+|+++ +|+.... ..+..+++..
T Consensus 76 t~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 155 (189)
T 1z06_A 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD 155 (189)
T ss_dssp CCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH
Confidence 99999988 677788899999999999986 6663321 1222333444
Q ss_pred HhCCCccceEEeccccc---ccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRC---FSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g---~gi~~l~~~i~~ 176 (257)
.++ .+++++||++| .|+++++++|..
T Consensus 156 ~~~---~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 156 THS---MPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp HTT---CCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred HcC---CEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 334 46999999999 999999888763
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=135.64 Aligned_cols=130 Identities=16% Similarity=0.192 Sum_probs=90.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||+++|++..... .....++.+.....+.+ ++....+.||||||
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G 79 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVNI----DGKQIKLQIWDTAG 79 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEEEEEEEE----TTEEEEEEEECCTT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccceeEEEEEEE----CCEEEEEEEEECCC
Confidence 3567899999999999999999997643211 11112222222223333 34457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNID 152 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~ 152 (257)
+++|...+...++.+|++|+|+|+++ +|+.... ..+..+++.+.++
T Consensus 80 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-- 157 (191)
T 2a5j_A 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG-- 157 (191)
T ss_dssp GGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT--
T ss_pred chhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcC--
Confidence 99988888888999999999999987 6664211 1222233333334
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 158 -~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 158 -LIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp -CEEEEECTTTCTTHHHHHHHHH
T ss_pred -CEEEEEeCCCCCCHHHHHHHHH
Confidence 4699999999999999998876
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-18 Score=134.87 Aligned_cols=130 Identities=16% Similarity=0.199 Sum_probs=93.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++... ......+.+.+.....+.+ ++....+.+|||||+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 68 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTF--------------SGSYITTIGVDFKIRTVEI----NGEKVKLQIWDTAGQ 68 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----------------CCTTTBSEEEEEEEEEE----TTEEEEEEEEEETTG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC--------------CCccCCCceeEEEEEEEEE----CCEEEEEEEEcCCCc
Confidence 5678999999999999999999954221 1122334454444444444 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+++...+..+++.+|++++|+|+++ +|+.+.. .......+...++ .
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 145 (181)
T 3tw8_B 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG---I 145 (181)
T ss_dssp GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---C
T ss_pred hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcC---C
Confidence 9988888888999999999999987 6664322 1122233333334 4
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.|+++++++|..
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 146 QLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp CEEECBTTTTBSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999988763
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.2e-18 Score=132.27 Aligned_cols=140 Identities=15% Similarity=0.134 Sum_probs=91.8
Q ss_pred CCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecc-----cCCc
Q psy12244 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSI-----LDGE 93 (257)
Q Consensus 20 ~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~-----~~~~ 93 (257)
|...+..+..+|+++|++|+|||||+++|+...... .....+..+.. ...+.+.+. ..+.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNS--------------KFITTVGIDFREKRVVYRANGPDGAVGRGQ 68 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------SCCCCCSEEEEEEEEEECTTSCCCSSCCCE
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCc--------------CcccccceeeeeEEEEEecCCcccccccCc
Confidence 333334567899999999999999999997632210 00111222221 112222210 0011
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHH
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEA 140 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~ 140 (257)
...+.||||||+++|...+...++.+|++|+|+|+++ +|+.+.. ..+
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEE 148 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 4789999999999999999999999999999999987 6653311 122
Q ss_pred HHHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 141 CEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++.+.++ .+++++||++|.|+++++++|..
T Consensus 149 ~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~ 181 (195)
T 3bc1_A 149 EARELAEKYG---IPYFETSAANGTNISHAIEMLLD 181 (195)
T ss_dssp HHHHHHHHHT---CCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCEEEEECCCCCCHHHHHHHHHH
Confidence 2333443344 46999999999999999988763
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=133.74 Aligned_cols=125 Identities=15% Similarity=0.094 Sum_probs=88.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++.... ....|.......+.+.. ..+.+|||||+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-----------------~~~~t~g~~~~~~~~~~------~~l~i~Dt~G~ 70 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-----------------HITPTQGFNIKSVQSQG------FKLNVWDIGGQ 70 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-----------------EEEEETTEEEEEEEETT------EEEEEEECSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-----------------cccCcCCeEEEEEEECC------EEEEEEECCCC
Confidence 45678999999999999999999542110 00112111222344433 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhC----
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFN---- 150 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~---- 150 (257)
+.|...+..+++.+|++++|+|+++ +|+..... .+++.+.++
T Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~ 147 (181)
T 1fzq_A 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---ASEIAEGLNLHTI 147 (181)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGGC
T ss_pred HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC---HHHHHHHhCchhc
Confidence 9999999999999999999999986 66654321 122333322
Q ss_pred -CCccceEEecccccccccccccccCC
Q psy12244 151 -IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 -~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|+++++++|..
T Consensus 148 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (181)
T 1fzq_A 148 RDRVWQIQSCSALTGEGVQDGMNWVCK 174 (181)
T ss_dssp CSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cCCceEEEEccCCCCCCHHHHHHHHHH
Confidence 12356899999999999999988863
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-18 Score=131.20 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=90.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|.+|+|||||+++|++...... .....+.+.....+.+ ++....+.||||||
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G 73 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFGTRIIEV----SGQKIKLQIWDTAG 73 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--------------CTTSCCCCEEEEEEEE----TTEEEEEEEEECTT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEEEEEE----CCeEEEEEEEECCC
Confidence 45678999999999999999999986432110 0111111222222222 33457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---HHHHHHHHHHHhCC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN---PEACEEQLQTLFNI 151 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~---~~~~~~~~~~~~~~ 151 (257)
++++...+..+++.+|++++|+|+++ +|+.... .++. +++.+.++
T Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~- 151 (179)
T 1z0f_A 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEA-KQFAEENG- 151 (179)
T ss_dssp GGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHH-HHHHHHTT-
T ss_pred ChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH-HHHHHHcC-
Confidence 99999999999999999999999987 6663221 2222 22333233
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 152 --~~~~~~Sa~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 152 --LLFLEASAKTGENVEDAFLEAA 173 (179)
T ss_dssp --CEEEECCTTTCTTHHHHHHHHH
T ss_pred --CEEEEEeCCCCCCHHHHHHHHH
Confidence 4799999999999999988775
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=134.55 Aligned_cols=128 Identities=10% Similarity=0.055 Sum_probs=87.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|++..... ...|+......+.+.+ ..+.+|||||+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------------~~~t~~~~~~~~~~~~------~~~~i~Dt~G~ 70 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH-----------------TSPTIGSNVEEIVINN------TRFLMWDIGGQ 70 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEE-----------------EECCSCSSCEEEEETT------EEEEEEECCC-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-----------------CcCCCccceEEEEECC------EEEEEEECCCC
Confidence 456789999999999999999997532110 0112223333444444 88999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~~ 152 (257)
++|...+..+++.+|++++|+|+++ +|+.... .++..+.+... +...
T Consensus 71 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~ 150 (187)
T 1zj6_A 71 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDH 150 (187)
T ss_dssp ---CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSS
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCC
Confidence 9988888888999999999999986 6765432 33333333221 2223
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|.+
T Consensus 151 ~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (187)
T 1zj6_A 151 QWHIQACCALTGEGLCQGLEWMMS 174 (187)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CcEEEEccCCCCcCHHHHHHHHHH
Confidence 457999999999999999998874
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=136.31 Aligned_cols=130 Identities=13% Similarity=0.115 Sum_probs=89.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|.+|+|||||+++|++...... ....|+......+.+.+ ..+.||||||
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------~~~~t~~~~~~~~~~~~------~~~~l~Dt~G 76 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ---------------NILPTIGFSIEKFKSSS------LSFTVFDMSG 76 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCS---------------SCCCCSSEEEEEEECSS------CEEEEEEECC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCC---------------CcCCccceeEEEEEECC------EEEEEEECCC
Confidence 34668999999999999999999965331110 11123333333444443 7899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCC-CHHHHHHHHH-HHh
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNA-NPEACEEQLQ-TLF 149 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~-~~~~~~~~~~-~~~ 149 (257)
+++|...+..+++.+|++++|+|+++ +|+... ..++..+.+. ..+
T Consensus 77 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 156 (190)
T 2h57_A 77 QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI 156 (190)
T ss_dssp STTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGC
T ss_pred CHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhc
Confidence 99998888889999999999999986 555432 2233333222 111
Q ss_pred CCCccceEEecccccccccccccccC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.....+++++||++|.|+++++++|.
T Consensus 157 ~~~~~~~~~~Sa~~~~gi~~l~~~l~ 182 (190)
T 2h57_A 157 KDKPWHICASDAIKGEGLQEGVDWLQ 182 (190)
T ss_dssp CSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cCCceEEEEccCCCCcCHHHHHHHHH
Confidence 22345799999999999999998876
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=135.16 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=89.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++....... ...+..+.....+.+ ++....+.||||||+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 84 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--------------RTTIGVEFSTRTVML----GTAAVKAQIWDTAGL 84 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--------------CCCSSEEEEEEEEEE----TTEEEEEEEEEESCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 45789999999999999999999874322110 111122222222222 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
.+|...+...++.+|++|+|+|++. +|+.... .......+....+
T Consensus 85 ~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 161 (193)
T 2oil_A 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNG--- 161 (193)
T ss_dssp CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT---
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcC---
Confidence 9998888899999999999999987 5553221 1122222333223
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 162 LLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp CEEEEECTTTCTTHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHH
Confidence 4799999999999999998875
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=136.57 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=92.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|++|+|||||+++|++..... ...++++.+.....+.+ ++....+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 67 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN--------------DYISTIGVDFKIKTVEL----DGKTVKLQIWDTAGQ 67 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT--------------TCCCSSCCCEEEEEEEE----TTEEEEEEEECCTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCcccceeEEEEEEE----CCEEEEEEEEeCCCh
Confidence 467899999999999999999997633211 11122333332333333 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++|+|+|+++ +|+.... ..+...++....+
T Consensus 68 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 144 (206)
T 2bcg_Y 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK--- 144 (206)
T ss_dssp TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC---
Confidence 9998888888999999999999987 7775432 1222333333333
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 145 ~~~~~~Sa~~g~gi~~l~~~l~~ 167 (206)
T 2bcg_Y 145 MPFLETSALDSTNVEDAFLTMAR 167 (206)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=136.41 Aligned_cols=77 Identities=10% Similarity=0.106 Sum_probs=59.7
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCC--CHHHHHHH
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNA--NPEACEEQ 144 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~--~~~~~~~~ 144 (257)
..+.||||||+.+|...+..+++.+|++|+|+|+++ +|.... ..++..+.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~ 172 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKY 172 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHH
Confidence 789999999999999888999999999999999987 673211 12333322
Q ss_pred HHHHhCCCccceEEecccccccccccccccC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+. .. ..+++++||++|.|+++++++|.
T Consensus 173 ~~-~~---~~~~~~~Sa~~~~~i~~l~~~l~ 199 (208)
T 3clv_A 173 AQ-DN---NLLFIQTSAKTGTNIKNIFYMLA 199 (208)
T ss_dssp HH-HT---TCEEEEECTTTCTTHHHHHHHHH
T ss_pred HH-Hc---CCcEEEEecCCCCCHHHHHHHHH
Confidence 22 22 34799999999999999998876
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-18 Score=132.65 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=91.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... ......+.+.....+.+ ++....+.||||||+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 69 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD--------------DSNHTIGVEFGSKIINV----GGKYVKLQIWDTAGQ 69 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT--------------TCCCCSEEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceEEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 567899999999999999999997643211 11223333333333333 344478999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC---CHHHHHHHHHHHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA---NPEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~---~~~~~~~~~~~~~~~~ 152 (257)
++|...+..+++.+|++++|+|+++ +|+... ...+. .++....
T Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~--- 145 (186)
T 2bme_A 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEA-SRFAQEN--- 145 (186)
T ss_dssp GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHT---
T ss_pred HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH-HHHHHHc---
Confidence 9999999999999999999999987 665321 12222 2222222
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~ 169 (186)
T 2bme_A 146 ELMFLETSALTGENVEEAFVQCAR 169 (186)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHH
Confidence 357999999999999999988763
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=135.55 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=88.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++.... ....|+......+.+.+ ..+.+|||||++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-----------------TLQPTWHPTSEELAIGN------IKFTTFDLGGHI 78 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-----------------CCCCCCSCEEEEEEETT------EEEEEEECCCSG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-----------------ccccCCCCCeEEEEECC------EEEEEEECCCCH
Confidence 4568999999999999999999763321 01123333334455544 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC----
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI---- 151 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~---- 151 (257)
++...+..+++.+|++++|+|+++ +|+.+.. ..+++++.++.
T Consensus 79 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~ 155 (190)
T 1m2o_B 79 QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV---SEAELRSALGLLNTT 155 (190)
T ss_dssp GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC---CHHHHHHHhCCcccc
Confidence 988877888899999999999987 6665421 12333443322
Q ss_pred --------CccceEEecccccccccccccccC
Q psy12244 152 --------DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 --------~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 156 GSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp C---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred ccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 345799999999999999998775
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=136.56 Aligned_cols=132 Identities=15% Similarity=0.108 Sum_probs=86.9
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
+.+...+..+|+++|++|+|||||+++|+..... ....|+......+.+.. ..+.+|
T Consensus 22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~i~ 78 (192)
T 2b6h_A 22 SRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-----------------TTIPTIGFNVETVEYKN------ICFTVW 78 (192)
T ss_dssp GGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-----------------EEEEETTEEEEEEEETT------EEEEEE
T ss_pred HHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-----------------ccCCcCceeEEEEEECC------EEEEEE
Confidence 3455567789999999999999999999532110 01123332233344433 889999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL 148 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~ 148 (257)
||||+++|...+...++.+|++++|+|+++ +|+.... .+++.+.+...
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 158 (192)
T 2b6h_A 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQ 158 (192)
T ss_dssp ECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 999999998888889999999999999986 6664432 23333222211
Q ss_pred -hCCCccceEEecccccccccccccccC
Q psy12244 149 -FNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 149 -~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
......+++++||++|.|+++++++|.
T Consensus 159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 186 (192)
T 2b6h_A 159 HLRSRTWYVQATCATQGTGLYDGLDWLS 186 (192)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cccCCceEEEECcCCCcCCHHHHHHHHH
Confidence 111234689999999999999998876
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-18 Score=136.02 Aligned_cols=134 Identities=12% Similarity=0.091 Sum_probs=89.5
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
..+....++|+++|.+|+|||||+++|++...... ....|+......+.... ..+.|||
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---------------~~~~t~~~~~~~~~~~~------~~~~i~D 69 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK---------------HITATVGYNVETFEKGR------VAFTVFD 69 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC-------------------CCCCCSSEEEEEEEETT------EEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc---------------ccccccceeEEEEEeCC------EEEEEEE
Confidence 34556788999999999999999999964321110 01122222233333333 8899999
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------------------cCCCCCC-HHHHH
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------------------VDLKNAN-PEACE 142 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------------------~D~~~~~-~~~~~ 142 (257)
|||+++|...+..+++.+|++|+|+|+++ +|+.... .++..
T Consensus 70 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 149 (199)
T 4bas_A 70 MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELV 149 (199)
T ss_dssp ECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHH
T ss_pred CCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHH
Confidence 99999999888889999999999999986 4443321 23333
Q ss_pred HHHHH--HhCCCccceEEecccccccccccccccCC
Q psy12244 143 EQLQT--LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 143 ~~~~~--~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.+.. .......+++++||++|.|+++++++|..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 150 EILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp HHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHH
Confidence 33221 11234467999999999999999998874
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-18 Score=130.84 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=90.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++..... ...+..+.+.....+.+ ++....+.+|||||+.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~G~~~ 64 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE--------------NKEPTIGAAFLTQRVTI----NEHTVKFEIWDTAGQER 64 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEE----TTEEEEEEEEEECCSGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEE----CCEEEEEEEEECCCChh
Confidence 4689999999999999999997643211 11122223322333333 33457899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC---C--HHHHHHHHHHHhCCC
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA---N--PEACEEQLQTLFNID 152 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~---~--~~~~~~~~~~~~~~~ 152 (257)
|...+...++.+|++++|+|+++ +|+... . ..+..+++....+
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-- 142 (170)
T 1ek0_A 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-- 142 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT--
T ss_pred hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC--
Confidence 99888999999999999999987 565322 1 1222333333334
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 143 -~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 143 -LLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHHT
T ss_pred -CEEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988763
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=132.81 Aligned_cols=130 Identities=14% Similarity=0.172 Sum_probs=92.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|++|+|||||+++|+....... ....++.+.....+.+ ++....+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 67 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTIYR----NDKRIKLQIWDTAGL 67 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSC--------------CCCCCSEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC--------------cCCccceeEEEEEEEE----CCeEEEEEEEECCCc
Confidence 4568999999999999999999975332110 0111122222222222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++|+|+|+++ +|+.... ..+..+++.+.++
T Consensus 68 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 144 (203)
T 1zbd_A 68 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG--- 144 (203)
T ss_dssp GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT---
T ss_pred hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC---
Confidence 9999999999999999999999987 7775432 1233334444444
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~ 167 (203)
T 1zbd_A 145 FEFFEASAKDNINVKQTFERLVD 167 (203)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999988864
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=134.52 Aligned_cols=142 Identities=16% Similarity=0.148 Sum_probs=91.4
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||++.+.+......... .. ........|+...+....+. ..++....+.+|||||
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~---~~---~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~i~Dt~G 83 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGE---MV---SLATEDERTLFFDFLPLDIG-EVKGFKTRFHLYTVPG 83 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCC---CE---EEECSSCEEEEEEECCSSCC-CSSSCEEEEEEEECCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhcccccccc---cc---ccccccccceeeeecccccc-cccCCceEEEEEeCCC
Confidence 35678999999999999999977754222110000 00 00000112322222111110 1245568899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCCHHHHHHHHHHHh
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNANPEACEEQLQTLF 149 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~~~~~~~~~~~~~ 149 (257)
+++|...+..+++.+|++|+|+|+++ +|+..... .+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~ 160 (198)
T 3t1o_A 84 QVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALP---VEMVRAVV 160 (198)
T ss_dssp CCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCC---HHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccC---HHHHHHHH
Confidence 99999999999999999999999982 66654322 22333333
Q ss_pred CCCcc-ceEEecccccccccccccccCC
Q psy12244 150 NIDKK-SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 ~~~~~-~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..... +++++||++|.|+++++++|..
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 188 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLKEVSR 188 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHHHHHH
T ss_pred HhcCCceEEEEecCCCcCHHHHHHHHHH
Confidence 33334 7999999999999999988763
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-18 Score=134.94 Aligned_cols=128 Identities=9% Similarity=0.049 Sum_probs=88.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|.+|+|||||+++|++.... ....|.......+.+.+ ..+.+|||||
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~i~Dt~G 74 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVV-----------------HTSPTIGSNVEEIVINN------TRFLMWDIGG 74 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCE-----------------EEECCSSSSCEEEEETT------EEEEEEEESS
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCC-----------------ccCCcCceeeEEEEECC------EEEEEEECCC
Confidence 345679999999999999999999753221 01112222233344444 7899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNI 151 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~ 151 (257)
+++|...+..+++.+|++++|+|+++ +|+.... .++..+.+... +..
T Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~ 154 (181)
T 2h17_A 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD 154 (181)
T ss_dssp SGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccC
Confidence 99998888888999999999999987 6664422 23332222111 112
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 155 ~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 155 HQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CceEEEEccCCCCcCHHHHHHHHH
Confidence 234789999999999999998775
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-18 Score=132.23 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=91.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++... ..+..+.++.+.....+.+.+ +....+.+|||||+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~~~---~~~~~~~~~Dt~G~ 66 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF--------------GKQYKQTIGLDFFLRRITLPG---NLNVTLQIWDIGGQ 66 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT--------------THHHHHTTTSSEEEEEEEETT---TEEEEEEEEECTTC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC--------------CCCCCCceeEEEEEEEEEeCC---CCEEEEEEEECCCC
Confidence 3567899999999999999999975321 122233333333334444421 23478999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
+.|...+..+++.+|++++|+|+++ +|+.+.. ..+..+.+.+.++
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 146 (178)
T 2hxs_A 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG 146 (178)
T ss_dssp CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC
Confidence 9998888899999999999999987 4443211 1122223333334
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 147 ---~~~~~~Sa~~~~gi~~l~~~l~~ 169 (178)
T 2hxs_A 147 ---FSSHFVSAKTGDSVFLCFQKVAA 169 (178)
T ss_dssp ---CEEEEECTTTCTTHHHHHHHHHH
T ss_pred ---CcEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-18 Score=131.49 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=89.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... ......+.+.....+.+ ++....+.+|||||+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~G~ 65 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHE--------------FQESTIGAAFLTQTVCL----DDTTVKFEIWDTAGQ 65 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceEEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 356789999999999999999997632211 01111222222222322 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---HHHHHHHHHHHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN---PEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~---~~~~~~~~~~~~~~~ 152 (257)
.+|...+...++.+|++++|+|+++ +|+.... .++. .++....
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~-~~~~~~~--- 141 (170)
T 1r2q_A 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEA-QSYADDN--- 141 (170)
T ss_dssp GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHT---
T ss_pred HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHH-HHHHHHc---
Confidence 9999888899999999999999987 5653211 1222 2222222
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 142 ~~~~~~~Sa~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 142 SLLFMETSAKTSMNVNEIFMAIAK 165 (170)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHH
Confidence 356999999999999999988763
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-18 Score=137.76 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=83.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++.... ....|+......+.+.+ ..+.+|||||++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-----------------QHVPTLHPTSEELTIAG------MTFTTFDLGGHI 80 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-----------------------CCCCCSCEEEEETT------EEEEEEEECC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-----------------ccCCCCCceeEEEEECC------EEEEEEECCCcH
Confidence 4568999999999999999999532110 11123333344455544 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHHHHh-----
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQTLF----- 149 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~~~~----- 149 (257)
+|...+..+++.+|++++|+|+++ +|+... ..++..+.+....
T Consensus 81 ~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (198)
T 1f6b_A 81 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGK 160 (198)
T ss_dssp --CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCS
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccc
Confidence 988877888999999999999986 666542 2233222222110
Q ss_pred --------CCCccceEEecccccccccccccccC
Q psy12244 150 --------NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 --------~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.....+++++||++|.|+++++++|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 161 GSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp SCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cccccccccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 01345799999999999999998876
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=135.23 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=69.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|++|+|||||+++|+.... ..+..++++.+.....+.+ ++....+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 67 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF--------------NSTFISTIGIDFKIRTIEL----DGKRIKLQIWDTAGQ 67 (183)
T ss_dssp SEEEEEEEECCCCC------------------------------CHHHHHCEEEEEEEEEE----TTEEEEEEEEEC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC--------------CCCCCCcccceeEEEEEEE----CCEEEEEEEEcCCCC
Confidence 4578999999999999999999965221 1122333444443334443 345578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+.++
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--- 144 (183)
T 2fu5_C 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG--- 144 (183)
T ss_dssp ------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT---
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC---
Confidence 9998888888999999999999987 7775422 1222233333344
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 145 ~~~~~~Sa~~~~~i~~l~~~l~~ 167 (183)
T 2fu5_C 145 IKFMETSAKANINVENAFFTLAR 167 (183)
T ss_dssp CEEEECCC---CCHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=131.90 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=83.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+++|+++|++|+|||||+++|++..... .+...+.|.+.....+.+.+ ..+.+|||||+..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~------~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV-------------VADVPGVTRDLKEGVVETDR------GRFLLVDTGGLWS 61 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC------------------------CCEEEEEEETT------EEEEEEECGGGCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee-------------ccCCCCceecceEEEEEeCC------ceEEEEECCCCCC
Confidence 3689999999999999999998643211 11233445554444555544 6899999999987
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCcc
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
+...+...++.+|++++|+|+++ +|+.+. .+++.+.......
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~~~~~~~~~~~ 136 (161)
T 2dyk_A 62 GDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH-----ELYLGPLYGLGFG 136 (161)
T ss_dssp SSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG-----GGGCGGGGGGSSC
T ss_pred ccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc-----hHhHHHHHhCCCC
Confidence 45566778899999999999986 555332 1122222222223
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 137 ~~~~~Sa~~~~gv~~l~~~l~ 157 (161)
T 2dyk_A 137 DPIPTSSEHARGLEELLEAIW 157 (161)
T ss_dssp SCEECBTTTTBSHHHHHHHHH
T ss_pred CeEEEecccCCChHHHHHHHH
Confidence 689999999999999988765
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=130.73 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=89.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++...... ....+.+.....+.+ ++....+.||||||+
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------~~~t~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 62 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDE---------------YDPTIEDSYRKQVVI----DGETCLLDILDTAGQ 62 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCC---------------CCTTCCEEEEEEEEE----TTEEEEEEEEECCCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCC---------------CCCCchheEEEEEEE----CCcEEEEEEEECCCc
Confidence 3567899999999999999999986432110 001111111222222 445577899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++++|+|+++ +|+.... ..+..+.+.+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~--- 139 (189)
T 4dsu_A 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG--- 139 (189)
T ss_dssp ---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC---
Confidence 9999888899999999999999987 7775432 2344445555554
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~l~~ 162 (189)
T 4dsu_A 140 IPFIETSAKTRQGVDDAFYTLVR 162 (189)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-18 Score=130.51 Aligned_cols=129 Identities=14% Similarity=0.168 Sum_probs=90.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... ...+....+.....+.+ .+....+.+|||||+
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dt~G~ 65 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDP--------------NINPTIGASFMTKTVQY----QNELHKFLIWDTAGL 65 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEE----TTEEEEEEEEEECCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceeEEEEEEEEEE----CCeEEEEEEEcCCCc
Confidence 356789999999999999999997643210 00111112222222222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+...++.+|++++|+|+++ +|+.... ..+..+.+.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~--- 142 (170)
T 1z0j_A 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH--- 142 (170)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT---
T ss_pred hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcC---
Confidence 9998888889999999999999987 6664321 1223333333333
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|++++++.|.
T Consensus 143 ~~~~~~Sa~~~~~i~~l~~~i~ 164 (170)
T 1z0j_A 143 AIFVETSAKNAININELFIEIS 164 (170)
T ss_dssp CEEEECBTTTTBSHHHHHHHHH
T ss_pred CEEEEEeCCCCcCHHHHHHHHH
Confidence 4699999999999999998876
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-18 Score=139.28 Aligned_cols=131 Identities=13% Similarity=0.168 Sum_probs=90.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... .....++.+.....+.+ ++....+.||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 67 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN--------------QYKATIGADFLTKEVMV----DDRLVTMQIWDTAGQ 67 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS--------------SCCCCCSEEEEEEEEES----SSCEEEEEEEEECSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCcccceEEEEEEEE----CCEEEEEEEEeCCCc
Confidence 467899999999999999999997643211 01122333333333333 345578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC-HHHHHHHHHHHhC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN-PEACEEQLQTLFN 150 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~-~~~~~~~~~~~~~ 150 (257)
.+|...+..+++.+|++|+|+|+++ +|+.... ..+....+...
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-- 145 (207)
T 1vg8_A 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS-- 145 (207)
T ss_dssp GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH--
T ss_pred HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh--
Confidence 9988877888899999999999876 6664322 11222222221
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|+++++++|..
T Consensus 146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~ 171 (207)
T 1vg8_A 146 KNNIPYFETSAKEAINVEQAFQTIAR 171 (207)
T ss_dssp TTSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 23457999999999999999988864
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-18 Score=135.96 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=91.2
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.....+|+++|++|+|||||+++|++..... +..++++.+.....+.+ ++....+.||||||
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~l~Dt~G 78 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNP--------------SFITTIGIDFKIKTVDI----NGKKVKLQLWDTAG 78 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCC--------------SSSCCCSCCEEEEEEEE----TTEEEEEEEECCTT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCc--------------ccCCcccceEEEEEEEE----CCEEEEEEEEeCCC
Confidence 3456789999999999999999997633211 11122333333333333 34457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC-HHHHHHHHHHHhCCCc
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN-PEACEEQLQTLFNIDK 153 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~-~~~~~~~~~~~~~~~~ 153 (257)
+++|...+..++..+|++++|+|+++ +|+.... ..+..+.+.+.++
T Consensus 79 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--- 155 (213)
T 3cph_A 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG--- 155 (213)
T ss_dssp GGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT---
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC---
Confidence 99998888888999999999999986 6763221 1223334444444
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 156 ~~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 156 IPFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp CCEEECBTTTTBSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 36999999999999999988864
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-18 Score=132.78 Aligned_cols=131 Identities=22% Similarity=0.260 Sum_probs=91.2
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+..+..+|+++|++|+|||||+++|+...... . ..+...... ...+.+ ++..+.+.|||||
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~--~------------~~~t~~~~~-~~~~~~----~~~~~~~~l~Dt~ 62 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVD--S------------YDPTIENTF-TKLITV----NGQEYHLQLVDTA 62 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCS--C------------CCTTCCEEE-EEEEEE----TTEEEEEEEEECC
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCC--C------------CCCCccccE-EEEEEE----CCEEEEEEEEeCC
Confidence 44577899999999999999999997533110 0 001111111 222222 4455788999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
|+++|...+...++.+|++++|+|+++ +|+.+.. ..+..+.+.+.++
T Consensus 63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (181)
T 3t5g_A 63 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWN 142 (181)
T ss_dssp CCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred CchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhC
Confidence 999987777788899999999999987 6764332 1223333444444
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 143 ---~~~~~~Sa~~~~~v~~l~~~l~~ 165 (181)
T 3t5g_A 143 ---AAFLESSAKENQTAVDVFRRIIL 165 (181)
T ss_dssp ---CEEEECCTTSHHHHHHHHHHHHH
T ss_pred ---CcEEEEecCCCCCHHHHHHHHHH
Confidence 46999999999999999988874
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-18 Score=151.17 Aligned_cols=131 Identities=18% Similarity=0.281 Sum_probs=91.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+..++|+++|++|+|||||+|+|++...... +...|.|.+.....+.+.+ ..+.||||||+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~-------------~~~~gtT~d~~~~~~~~~~------~~~~l~DT~G~ 233 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-------------SNVAGTTRDAVDTSFTYNQ------QEFVIVDTAGM 233 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-------------C---------CCEEEEETT------EEEEETTHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceee-------------cCCCCceeeeeEEEEEECC------eEEEEEECCCc
Confidence 4568999999999999999999986433221 2245677777666677665 67999999998
Q ss_pred ----------cccHHH-HHHhhhhcceEEEEEecCc--------------------------cCCCCCC---HHHHHHHH
Q psy12244 106 ----------VDFSNE-VTRSLAACQGVVLLIDANQ--------------------------VDLKNAN---PEACEEQL 145 (257)
Q Consensus 106 ----------~~~~~~-~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~---~~~~~~~~ 145 (257)
+.|... ...+++.+|++++|+|+++ +|+.+.+ .++..+++
T Consensus 234 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~ 313 (436)
T 2hjg_A 234 RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENI 313 (436)
T ss_dssp TCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHH
T ss_pred CcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHH
Confidence 444433 3357889999999999987 7775443 24455566
Q ss_pred HHHhC-CCccceEEecccccccccccccccC
Q psy12244 146 QTLFN-IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 146 ~~~~~-~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+.+. ....|++++||++|.|++++++.+.
T Consensus 314 ~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~ 344 (436)
T 2hjg_A 314 RDHFQFLDYAPILFMSALTKKRIHTLMPAII 344 (436)
T ss_dssp HHHCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred HHhcccCCCCCEEEEecccCCCHHHHHHHHH
Confidence 65552 2356899999999999999987775
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-18 Score=133.77 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=90.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++.. ... ...|+......+.+.. ..+.+|||||+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~---------------~~~t~~~~~~~~~~~~------~~~~~~Dt~G~ 72 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDT---------------ISPTLGFNIKTLEHRG------FKLNIWDVGGQ 72 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSS---------------CCCCSSEEEEEEEETT------EEEEEEEECCS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCc---------------ccccCccceEEEEECC------EEEEEEECCCC
Confidence 567899999999999999999996533 110 1112222233444444 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH-hCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL-FNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~-~~~~ 152 (257)
++|...+...++.+|++++|+|+++ +|+.... .++..+.+... +...
T Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (186)
T 1ksh_A 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSH 152 (186)
T ss_dssp HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSS
T ss_pred HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCC
Confidence 9998888888999999999999986 6765432 22222222211 1123
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|.+
T Consensus 153 ~~~~~~~Sa~~~~gi~~l~~~l~~ 176 (186)
T 1ksh_A 153 HWRIQGCSAVTGEDLLPGIDWLLD 176 (186)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ceEEEEeeCCCCCCHHHHHHHHHH
Confidence 457999999999999999988863
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-18 Score=136.54 Aligned_cols=135 Identities=15% Similarity=0.152 Sum_probs=91.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc------cCCccEEEE
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI------LDGEEYLLN 98 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~------~~~~~~~~~ 98 (257)
.++..+|+++|++|+|||||+++|+..... ......++.+.....+.+... .......+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFN--------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 87 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCC--------------CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCC--------------cCCCCceeEEEEEEEEEECCccccccccCceeEEEE
Confidence 356789999999999999999999753211 001112222222233333320 000147899
Q ss_pred EeCCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHH
Q psy12244 99 LIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQL 145 (257)
Q Consensus 99 liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~ 145 (257)
||||||+++|...+...++.+|++|+|+|+++ +|+.... ..+..+++
T Consensus 88 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 167 (217)
T 2f7s_A 88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL 167 (217)
T ss_dssp EEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH
Confidence 99999999999999999999999999999987 5553211 12223334
Q ss_pred HHHhCCCccceEEecccccccccccccccCC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+.++ .+++++||++|.|+++++++|..
T Consensus 168 ~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 168 ADKYG---IPYFETSAATGQNVEKAVETLLD 195 (217)
T ss_dssp HHHTT---CCEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHCC---CcEEEEECCCCCCHHHHHHHHHH
Confidence 44334 46999999999999999988874
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-18 Score=129.68 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=83.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... .....++.+.....+.+ ++....+.+|||||+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~ 65 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFND--------------KHITTLGASFLTKKLNI----GGKRVNLAIWDTAGQ 65 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCS--------------SCCCCCSCEEEEEEEES----SSCEEEEEEEECCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCc--------------CCCCccceEEEEEEEEE----CCEEEEEEEEECCCc
Confidence 456789999999999999999997643210 00112222222223332 445578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+++...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+.++
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 142 (170)
T 1z08_A 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVG--- 142 (170)
T ss_dssp -------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT---
T ss_pred HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcC---
Confidence 9998888888899999999999987 6663321 1122223333333
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 143 AKHYHTSAKQNKGIEELFLDLC 164 (170)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHH
Confidence 5689999999999999998775
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.6e-19 Score=144.71 Aligned_cols=127 Identities=22% Similarity=0.303 Sum_probs=90.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+++|+++|++|+|||||+|+|++.... ....+|+|.+.....+.+.+ ..+.||||||+.+
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~--------------v~~~pg~Tv~~~~~~~~~~~------~~~~lvDtpG~~~ 60 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQR--------------VGNWPGVTVEKKTGEFLLGE------HLIEITDLPGVYS 60 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEE--------------EEECTTSSSEEEEEEEEETT------EEEEEEECCCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC--------------ccCCCCceEEEEEEEEEECC------eEEEEEeCCCccc
Confidence 368999999999999999999764211 11235677776667777665 6899999999988
Q ss_pred cHH----------HHHHhh--hhcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHHHHhC
Q psy12244 108 FSN----------EVTRSL--AACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQTLFN 150 (257)
Q Consensus 108 ~~~----------~~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~~~~~ 150 (257)
+.. ....++ ..+|++|+|+|++. +|+.... .....+.+.+.++
T Consensus 61 ~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg 140 (256)
T 3iby_A 61 LVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLG 140 (256)
T ss_dssp CC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHC
T ss_pred ccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC
Confidence 754 233344 78999999999998 3332111 1111344555555
Q ss_pred CCccceEEecccccccccccccccCCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+|++++||++|.|++++++.|...
T Consensus 141 ---~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 ---CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ---SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999988754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-18 Score=131.36 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=90.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++..... .....++.+.....+.+ ++....+.+|||||++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN--------------TYQATIGIDFLSKTMYL----EDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCCCSEEEEEEEEEE----TTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCceeeEEEEEEEEE----CCeEEEEEEEECCCcH
Confidence 45789999999999999999997633211 11223333333333333 3445789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---HHHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN---PEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~---~~~~~~~~~~~~~~~~ 153 (257)
+|...+...+..+|++++|+|+++ +|+.+.. .++.. .+...++
T Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~~~--- 150 (179)
T 2y8e_A 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE-RKAKELN--- 150 (179)
T ss_dssp GGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHH-HHHHHHT---
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHH-HHHHHcC---
Confidence 998888889999999999999986 5653221 22222 2222233
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 151 ~~~~~~Sa~~~~~i~~l~~~l~~ 173 (179)
T 2y8e_A 151 VMFIETSAKAGYNVKQLFRRVAA 173 (179)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988763
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-18 Score=128.90 Aligned_cols=127 Identities=15% Similarity=0.185 Sum_probs=87.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++.... .. ......... ...+.+ ++....+.+|||||+.+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~------------~~~t~~~~~-~~~~~~----~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EK------------YDPTIEDSY-RKQVEV----DCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CS------------CCCCSEEEE-EEEEES----SSCEEEEEEEEECSSCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CC------------CCCCccceE-EEEEEE----CCEEEEEEEEECCChHH
Confidence 468999999999999999999763211 00 011111111 111222 44557899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
|...+...++.+|++++|+|+++ +|+.+.. ..+..+.+.+.+ ...
T Consensus 64 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~ 141 (167)
T 1c1y_A 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW--CNC 141 (167)
T ss_dssp STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--TSC
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc--cCC
Confidence 99888899999999999999987 6664321 122222333332 245
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~ 162 (167)
T 1c1y_A 142 AFLESSAKSKINVNEIFYDLV 162 (167)
T ss_dssp EEEECBTTTTBSHHHHHHHHH
T ss_pred cEEEecCCCCCCHHHHHHHHH
Confidence 799999999999999988775
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.6e-18 Score=133.21 Aligned_cols=130 Identities=17% Similarity=0.160 Sum_probs=91.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|.+|+|||||+++|++...... ...|.........+.. ++....+.||||||+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPA----------------FVSTVGIDFKVKTVYR--HEKRVKLQIWDTAGQ 82 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCC----------------EEEEETTTEEEEEEEE--TTTTEEEEEECHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcc----------------cCCCeeeEEEEEEEEE--CCEEEEEEEEeCCCh
Confidence 3567999999999999999999986432110 0011111111122221 345588999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+.|...+...++.+|++|+|+|+++ +|+.+.. .....+.+...++
T Consensus 83 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 159 (191)
T 3dz8_A 83 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG--- 159 (191)
T ss_dssp HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC---
Confidence 9999999999999999999999986 6664321 2233334444444
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 160 ~~~~~~Sa~~~~gi~~l~~~l~~ 182 (191)
T 3dz8_A 160 FDFFEASAKENISVRQAFERLVD 182 (191)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999988763
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=131.53 Aligned_cols=135 Identities=13% Similarity=0.216 Sum_probs=88.6
Q ss_pred CCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 20 ~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
+..++..+.++|+++|++|+|||||+++|++..... ......+.|.... .+.+. ..+.+
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~~t~~~~--~~~~~-------~~~~l 73 (195)
T 1svi_A 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLA------------RTSSKPGKTQTLN--FYIIN-------DELHF 73 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------------------CCEE--EEEET-------TTEEE
T ss_pred hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCcc------------ccCCCCCceeeEE--EEEEC-------CcEEE
Confidence 455666778899999999999999999997532100 0111223333221 11221 25889
Q ss_pred eCCCC----------CcccHHHHHHhhhhc---ceEEEEEecCc--------------------------cCCCCCC-HH
Q psy12244 100 IDTPG----------HVDFSNEVTRSLAAC---QGVVLLIDANQ--------------------------VDLKNAN-PE 139 (257)
Q Consensus 100 iDtpG----------~~~~~~~~~~~~~~a---D~~ilVvd~~~--------------------------~D~~~~~-~~ 139 (257)
||||| ++.|...+..+++.+ |++++|+|++. +|+.... ..
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~ 153 (195)
T 1svi_A 74 VDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWD 153 (195)
T ss_dssp EECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHH
T ss_pred EECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHH
Confidence 99999 555665566666665 99999999886 6775433 34
Q ss_pred HHHHHHHHHhCC-CccceEEecccccccccccccccC
Q psy12244 140 ACEEQLQTLFNI-DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 140 ~~~~~~~~~~~~-~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++.+.. ...+++++||++|.|+++++++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 190 (195)
T 1svi_A 154 KHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIK 190 (195)
T ss_dssp HHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHH
Confidence 445566665543 346799999999999999998775
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=128.96 Aligned_cols=128 Identities=15% Similarity=0.202 Sum_probs=90.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+...... . ....+.... ...+.+ ++....+.+|||||+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~--~------------~~~t~~~~~-~~~~~~----~~~~~~l~i~Dt~G~ 76 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVD--D------------YDPTIEDSY-LKHTEI----DNQWAILDVLDTAGQ 76 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS--C------------CCTTCCEEE-EEEEEE----TTEEEEEEEEECCSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--C------------CCCCcccee-EEEEEe----CCcEEEEEEEECCCc
Confidence 456789999999999999999998532111 0 011111111 122222 445577889999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~ 152 (257)
++|...+..+++.+|++++|+|+++ +|+.+.. ..+..+++.+.++
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-- 154 (183)
T 3kkq_A 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-- 154 (183)
T ss_dssp GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT--
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC--
Confidence 9998888889999999999999987 6764422 2233334444444
Q ss_pred ccceEEeccc-ccccccccccccC
Q psy12244 153 KKSVLRIWHR-RCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~-~g~gi~~l~~~i~ 175 (257)
.+++++||+ +|.|++++++.|.
T Consensus 155 -~~~~~~Sa~~~~~~v~~l~~~l~ 177 (183)
T 3kkq_A 155 -IPYIETSAKDPPLNVDKTFHDLV 177 (183)
T ss_dssp -CCEEEEBCSSSCBSHHHHHHHHH
T ss_pred -CeEEEeccCCCCCCHHHHHHHHH
Confidence 569999999 9999999998775
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=129.98 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=89.9
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+..+..+|+++|++|+|||||+++|++.... .. ....+.... ...+.+ ++....+.|||||
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~------------~~~t~~~~~-~~~~~~----~~~~~~~~~~Dt~ 65 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SD------------YDPTIEDSY-TKICSV----DGIPARLDILDTA 65 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SS------------CCTTCCEEE-EEEEEE----TTEEEEEEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCc--cc------------cCCCcCceE-EEEEEE----CCEEEEEEEEECC
Confidence 3456789999999999999999999864211 00 011111111 122222 3445789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
|+.+|...+...++.+|++++|+|+++ +|+.... .....+.+....
T Consensus 66 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~- 144 (181)
T 2fn4_A 66 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH- 144 (181)
T ss_dssp CTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-
T ss_pred CchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc-
Confidence 999998888888999999999999987 5553211 122223333333
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 145 --~~~~~~~Sa~~~~gv~~l~~~l~~ 168 (181)
T 2fn4_A 145 --HVAYFEASAKLRLNVDEAFEQLVR 168 (181)
T ss_dssp --TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred --CCeEEEecCCCCCCHHHHHHHHHH
Confidence 346999999999999999988864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=131.80 Aligned_cols=130 Identities=21% Similarity=0.230 Sum_probs=90.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+...... ...+.++.+.....+.+ ++....+.||||||+
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 74 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDP--------------ELAATIGVDFKVKTISV----DGNKAKLAIWDTAGQ 74 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEE----TTEEEEEEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCc--------------cCCCccceEEEEEEEEE----CCeEEEEEEEeCCCc
Confidence 356789999999999999999997643211 11122222222233333 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH-HHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP-EACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~-~~~~~~~~~~~~~~~ 153 (257)
++|...+...++.+|++|+|+|+++ +|+..... .+...++.+..+
T Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--- 151 (195)
T 1x3s_A 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHS--- 151 (195)
T ss_dssp GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTT---
T ss_pred hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcC---
Confidence 9998888899999999999999987 66633221 122222333233
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~ 174 (195)
T 1x3s_A 152 MLFIEASAKTCDGVQCAFEELVE 174 (195)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHH
Confidence 46999999999999999988864
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=128.63 Aligned_cols=129 Identities=18% Similarity=0.230 Sum_probs=88.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|++|+|||||+++|+...... .....++.+.....+.+ ++....+.+|||||+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 64 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTK--------------DYKKTIGVDFLERQIQV----NDEDVRLMLWDTAGQ 64 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCC--------------CSSCCCSSSEEEEEEEE----TTEEEEEEEECCTTG
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceEEEEEEEEEEE----CCEEEEEEEEcCCCc
Confidence 456789999999999999999997632110 00111122222222332 334578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
.+|...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+.++ .
T Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 141 (168)
T 1z2a_A 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK---L 141 (168)
T ss_dssp GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT---C
T ss_pred HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC---C
Confidence 9988888888999999999999987 5653321 1222233333344 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 142 ~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 142 RFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp EEEECBTTTTBSSHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 699999999999999988775
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=126.12 Aligned_cols=126 Identities=15% Similarity=0.163 Sum_probs=87.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+....... ...... ......+.+ ++....+.+|||||+++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~-~~~~~~~~~----~~~~~~~~l~D~~G~~~ 63 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEK--------------YDPTIE-DFYRKEIEV----DSSPSVLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSC--------------CCTTCC-EEEEEEEEE----TTEEEEEEEEECCCTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCccc--------------CCCCcc-eeEEEEEEE----CCEEEEEEEEECCCchh
Confidence 46899999999999999999976332110 001111 111122222 34457799999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+...+...++.+|++++|+|+.+ +|+.... .....+++.+.++ .
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 140 (167)
T 1kao_A 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG---C 140 (167)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT---S
T ss_pred hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC---C
Confidence 99999999999999999999987 5653211 1222233333344 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 141 ~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 141 PFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp CEEEECTTCHHHHHHHHHHHH
T ss_pred CEEEecCCCCcCHHHHHHHHH
Confidence 699999999999999988775
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=132.88 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=59.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++.... . ...+.......+.+.. .....+.+|||||+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~--~---------------~~~~~~~~~~~~~~~~---~~~~~~~i~Dt~G~ 64 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYR--D---------------TQTSITDSSAIYKVNN---NRGNSLTLIDLPGH 64 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCC--C---------------BCCCCSCEEEEEECSS---TTCCEEEEEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc--c---------------ccCCcceeeEEEEecC---CCccEEEEEECCCC
Confidence 45678999999999999999999864311 0 0111112222233331 12478999999999
Q ss_pred cccHH-HHHHhhhhcceEEEEEecCc
Q psy12244 106 VDFSN-EVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~~~~-~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+|.. .+..+++.+|++|+|+|++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 65 ESLRFQLLDRFKSSARAVVFVVDSAA 90 (214)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEETTT
T ss_pred hhHHHHHHHHHHhhCCEEEEEEECCC
Confidence 99987 66777899999999999976
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.6e-19 Score=141.23 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=89.8
Q ss_pred CCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcC-ccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEE
Q psy12244 19 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTG-TVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLL 97 (257)
Q Consensus 19 ~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~-~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~ 97 (257)
.|...+..+.++|+++|.+|+|||||+|+|++... ... ....+.|.......+. ......+
T Consensus 20 ~~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~-----~~~~~~~ 81 (223)
T 4dhe_A 20 HLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFA-------------SKTPGRTQHINYFSVG-----PAAEPVA 81 (223)
T ss_dssp SGGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCT-------------TCCCCSCCCEEEEEES-----CTTSCSE
T ss_pred chhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceee-------------cCCCCcccceEEEEec-----CCCCCcE
Confidence 45566667788999999999999999999976431 111 1122344433222222 1223678
Q ss_pred EEeCCCCCcc----------cHHHHHHhhhh---cceEEEEEecCc--------------------------cCCCCCC-
Q psy12244 98 NLIDTPGHVD----------FSNEVTRSLAA---CQGVVLLIDANQ--------------------------VDLKNAN- 137 (257)
Q Consensus 98 ~liDtpG~~~----------~~~~~~~~~~~---aD~~ilVvd~~~--------------------------~D~~~~~- 137 (257)
.||||||+.+ |...+..+++. +|++++|+|+.. +|+....
T Consensus 82 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~ 161 (223)
T 4dhe_A 82 HLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQE 161 (223)
T ss_dssp EEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHH
T ss_pred EEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhh
Confidence 8999999633 34444444444 888999999986 6664422
Q ss_pred HHHHHHHHHHHhC-------CCccceEEecccccccccccccccCC
Q psy12244 138 PEACEEQLQTLFN-------IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 ~~~~~~~~~~~~~-------~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.....+.+.+.+. ....+++++||++|.|+++++++|..
T Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 207 (223)
T 4dhe_A 162 SINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIES 207 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence 2223333333321 24567999999999999999998874
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=130.02 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=93.8
Q ss_pred CCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEe-ceeeEEEeecccCCccEE
Q psy12244 18 TPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK-AQTASLRYTSILDGEEYL 96 (257)
Q Consensus 18 ~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~~~~~~~ 96 (257)
..|...+..+..+|+++|++|+|||||+++|++.... .. ...|.. .....+.+ ++..+.
T Consensus 8 ~~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~--~~--------------~~~t~~~~~~~~~~~----~~~~~~ 67 (194)
T 2atx_A 8 SSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFP--EE--------------YVPTVFDHYAVSVTV----GGKQYL 67 (194)
T ss_dssp -CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCC--CS--------------CCCSSCCCEEEEEES----SSCEEE
T ss_pred cccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCC--CC--------------CCCcccceeEEEEEE----CCEEEE
Confidence 3466666677889999999999999999999864211 10 001111 11112222 445578
Q ss_pred EEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---------
Q psy12244 97 LNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--------- 137 (257)
Q Consensus 97 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--------- 137 (257)
+.||||||+++|...+..+++.+|++++|+|+++ +|+....
T Consensus 68 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 147 (194)
T 2atx_A 68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDM 147 (194)
T ss_dssp EEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTT
T ss_pred EEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccc
Confidence 9999999999998888888999999999999987 6765421
Q ss_pred -----HHHHHHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 138 -----PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 -----~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+...++.+.++. .+++++||++|.|+++++++|..
T Consensus 148 ~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~ 189 (194)
T 2atx_A 148 KEKPICVEQGQKLAKEIGA--CCYVECSALTQKGLKTVFDEAII 189 (194)
T ss_dssp TCCCCCHHHHHHHHHHHTC--SCEEECCTTTCTTHHHHHHHHHH
T ss_pred cCcccCHHHHHHHHHHcCC--cEEEEeeCCCCCCHHHHHHHHHH
Confidence 01112223333332 36999999999999999987763
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=131.99 Aligned_cols=130 Identities=14% Similarity=0.186 Sum_probs=89.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|++...... .....+.+. ....+.+ ++....+.||||||+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~------------~~~~~~~~~--~~~~~~~----~~~~~~~~i~Dt~G~ 82 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN------------ISPTIGASF--MTKTVPC----GNELHKFLIWDTAGQ 82 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT------------CCCCSSEEE--EEEEEEC----SSSEEEEEEEEECCS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC------------cCCCcceeE--EEEEEEe----CCEEEEEEEEcCCCc
Confidence 4678999999999999999999976431100 000112221 1222222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+.+ .
T Consensus 83 ~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~---~ 159 (192)
T 2fg5_A 83 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESI---G 159 (192)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT---T
T ss_pred hhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHc---C
Confidence 9999888899999999999999987 5653211 112222233222 3
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 160 ~~~~~~Sa~~~~gi~~l~~~l~~ 182 (192)
T 2fg5_A 160 AIVVETSAKNAINIEELFQGISR 182 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHH
T ss_pred CEEEEEeCCCCcCHHHHHHHHHH
Confidence 57999999999999999998874
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=127.35 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=79.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++..... ......+.+.....+.+ ++....+.+|||||+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDH--------------AHEMENSEDTYERRIMV----DKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------------------CEEEEEEEE----TTEEEEEEEECCCCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcc--------------cccCCCcCCeeeEEEEE----CCeEEEEEEEECCCccc
Confidence 4689999999999999999996432211 01111222222222333 45567899999999998
Q ss_pred cHH-HHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 108 FSN-EVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 108 ~~~-~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+.. .....++.+|++++|+|+++ +|+.+.. ..+..+++.+.++
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 140 (169)
T 3q85_A 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS--- 140 (169)
T ss_dssp ------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT---
T ss_pred cchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcC---
Confidence 876 44556788999999999987 6664221 1222333444333
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|++++++.+.
T Consensus 141 ~~~~~~Sa~~~~~v~~l~~~l~ 162 (169)
T 3q85_A 141 CKHIETSAALHHNTRELFEGAV 162 (169)
T ss_dssp CEEEECBTTTTBSHHHHHHHHH
T ss_pred CcEEEecCccCCCHHHHHHHHH
Confidence 4799999999999999988775
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-18 Score=132.60 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=89.7
Q ss_pred CCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEE
Q psy12244 19 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLN 98 (257)
Q Consensus 19 ~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 98 (257)
.+...+....++|+++|.+|+|||||+++|++........ ..+.|.... .... . ..+.
T Consensus 14 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------------~~~~t~~~~--~~~~-~------~~~~ 71 (195)
T 3pqc_A 14 TPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK-------------TPGKTRSIN--FYLV-N------SKYY 71 (195)
T ss_dssp STTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS-------------SCCCCCCEE--EEEE-T------TTEE
T ss_pred ChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccC-------------CCCCccCeE--EEEE-C------CcEE
Confidence 3445666677899999999999999999997644211111 122222211 1111 1 3577
Q ss_pred EeCCCC----------CcccHHHHHHhhhh---cceEEEEEecCc--------------------------cCCCCCC-H
Q psy12244 99 LIDTPG----------HVDFSNEVTRSLAA---CQGVVLLIDANQ--------------------------VDLKNAN-P 138 (257)
Q Consensus 99 liDtpG----------~~~~~~~~~~~~~~---aD~~ilVvd~~~--------------------------~D~~~~~-~ 138 (257)
+||||| +..+...+..+++. +|++++|+|+.. +|+.... .
T Consensus 72 i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~ 151 (195)
T 3pqc_A 72 FVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSER 151 (195)
T ss_dssp EEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH
T ss_pred EEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHH
Confidence 999999 44455555555554 499999999876 6775432 4
Q ss_pred HHHHHHHHHHhCC-CccceEEecccccccccccccccC
Q psy12244 139 EACEEQLQTLFNI-DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+...+++++.+.. ...+++++||++|.|+++++++|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 189 (195)
T 3pqc_A 152 AKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIS 189 (195)
T ss_dssp HHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence 5555566655532 446799999999999999998876
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=124.98 Aligned_cols=126 Identities=15% Similarity=0.207 Sum_probs=84.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++..... . ...... ......+.+ ++..+.+.+|||||+.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~------------~~~t~~-~~~~~~~~~----~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVE--D------------YEPTKA-DSYRKKVVL----DGEEVQIDILDTAGQE 63 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS--C------------CCTTCC-EEEEEEEEE----TTEEEEEEEEECCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCC--C------------CCCCcc-eEEEEEEEE----CCEEEEEEEEECCCcc
Confidence 35789999999999999999998643110 0 001111 111112222 3445789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC---CHHHHHHHHHHHhCCC
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA---NPEACEEQLQTLFNID 152 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~---~~~~~~~~~~~~~~~~ 152 (257)
++...+..+++.+|++++|+|+++ +|+.+. ..++..+ +.+.++
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~-- 140 (168)
T 1u8z_A 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RADQWN-- 140 (168)
T ss_dssp -CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-HHHHHT--
T ss_pred hhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH-HHHHcC--
Confidence 999999999999999999999986 565322 1222222 222233
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 141 -~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 141 -VNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHH
T ss_pred -CeEEEeCCCCCCCHHHHHHHHH
Confidence 4699999999999999998775
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=127.35 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=72.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++..... .....+.+.. ..+.+ ++....+.+|||||++.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-------------~~~~~~~~~~---~~~~~----~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-------------EAEAAGHTYD---RSIVV----DGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------------------CEEE---EEEEE----TTEEEEEEEEECC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-------------CCCccccceE---EEEEE----CCEEEEEEEEECCCCcc
Confidence 4689999999999999999995321110 0111222221 11222 45567899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
|.......++.+|++++|+|+++ +|+.+.. ..+..+.+...++ .
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 138 (166)
T 3q72_A 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD---C 138 (166)
T ss_dssp -----------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT---C
T ss_pred chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC---C
Confidence 98888889999999999999986 7775432 2222333444333 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|+++++++|.
T Consensus 139 ~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 139 KFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EEEECBGGGTBSHHHHHHHHH
T ss_pred cEEEeccCCCCCHHHHHHHHH
Confidence 799999999999999998775
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-17 Score=128.77 Aligned_cols=129 Identities=14% Similarity=0.187 Sum_probs=90.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||+++|++..... . ....+.......+.+ ++..+.+.||||||
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~-------------~~~t~~~~~~~~~~~----~~~~~~~~l~Dt~G 71 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE--D-------------YEPTKADSYRKKVVL----DGEEVQIDILDTAG 71 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT--T-------------CCTTCCEEEEEEEEE----TTEEEEEEEEECCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCC--C-------------CCCccceEEEEEEEE----CCEEEEEEEEcCCC
Confidence 3457899999999999999999997643110 0 001111111122222 34457899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC---CHHHHHHHHHHHhC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA---NPEACEEQLQTLFN 150 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~---~~~~~~~~~~~~~~ 150 (257)
+.+|...+..+++.+|++++|+|+++ +|+... ..++..+ +.+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~ 150 (206)
T 2bov_A 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RAEQWN 150 (206)
T ss_dssp TTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHHHT
T ss_pred hhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH-HHHHhC
Confidence 99999999999999999999999986 666432 1222222 223333
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 151 ---~~~~~~Sa~~g~gi~~l~~~l~~ 173 (206)
T 2bov_A 151 ---VNYVETSAKTRANVDKVFFDLMR 173 (206)
T ss_dssp ---CEEEEECTTTCTTHHHHHHHHHH
T ss_pred ---CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988864
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-18 Score=134.22 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=88.6
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
.++..+..+|+++|.+|+|||||+++|++...... ......... ...+.+ ++..+.+.|||
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~-~~~~~~----~~~~~~~~l~D 78 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG--------------YDPTVENTY-SKIVTL----GKDEFHLHLVD 78 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSC--------------CCCCSEEEE-EEEEC--------CEEEEEEE
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC--------------CCCccceEE-EEEEEE----CCEEEEEEEEE
Confidence 45566788999999999999999999986432110 011111111 111111 34457899999
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHH
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTL 148 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~ 148 (257)
|||+++|...+..+++.+|++++|+|+++ +|+.... .....+.+...
T Consensus 79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 158 (201)
T 3oes_A 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES 158 (201)
T ss_dssp ECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHH
Confidence 99999988888888999999999999986 6664322 12223344444
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++ .+++++||++|.|++++++.|..
T Consensus 159 ~~---~~~~~~Sa~~~~~v~~l~~~l~~ 183 (201)
T 3oes_A 159 WG---ATFMESSARENQLTQGIFTKVIQ 183 (201)
T ss_dssp HT---CEEEECCTTCHHHHHHHHHHHHH
T ss_pred hC---CeEEEEeCCCCCCHHHHHHHHHH
Confidence 44 36999999999999999988874
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-18 Score=133.94 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=86.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|+..... ......++.+.....+.+ ++....+.||||||+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK--------------QDSNHTIGVEFGSRVVNV----GGKTVKLQIWDTAGQ 84 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------------------CCEEEEEEEE----TTEEEEEEEECCTTH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC--------------ccCCCcccceeEEEEEEE----CCeeeEEEEEcCCCc
Confidence 46789999999999999999999753211 111222232222233333 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---HHHHHHHHHHHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN---PEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~---~~~~~~~~~~~~~~~ 152 (257)
.+|...+...++.+|++|+|+|+++ +|+.... ..+. ..+.+..+
T Consensus 85 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~~-- 161 (200)
T 2o52_A 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SRFAQENE-- 161 (200)
T ss_dssp HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHTT--
T ss_pred HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHH-HHHHHHcC--
Confidence 9888778888999999999999987 5653211 1222 22222223
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 162 -~~~~~~SA~~g~gi~~l~~~l~~ 184 (200)
T 2o52_A 162 -LMFLETSALTGENVEEAFLKCAR 184 (200)
T ss_dssp -CEEEEECTTTCTTHHHHHHHHHH
T ss_pred -CEEEEEeCCCCCCHHHHHHHHHH
Confidence 56999999999999999988864
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=126.86 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=80.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++...... ....|.+.. ...+.+ ++....+.+|||||+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-------------~~~~~~~~~--~~~~~~----~~~~~~~~~~D~~g~~ 63 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-------------HEQLGEDVY--ERTLTV----DGEDTTLVVVDTWEAE 63 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------------------CCCSSSSEE--EEEEEE----TTEEEEEEEECCC---
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-------------cCcccccee--EEEEEE----CCEEEEEEEEecCCCC
Confidence 467899999999999999999975322110 001222221 222223 3445789999999998
Q ss_pred c--cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-H-HHHHHHHHHHhCC
Q psy12244 107 D--FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-P-EACEEQLQTLFNI 151 (257)
Q Consensus 107 ~--~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~-~~~~~~~~~~~~~ 151 (257)
. +.......++.+|++++|+|+++ +|+.+.. . .+..+.+...++
T Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~- 142 (175)
T 2nzj_A 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFD- 142 (175)
T ss_dssp ----CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT-
T ss_pred ccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcC-
Confidence 8 45555667788999999999987 6765422 1 122223333333
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.|+++++++|.
T Consensus 143 --~~~~~~Sa~~g~gi~~l~~~l~ 164 (175)
T 2nzj_A 143 --CKFIETSATLQHNVAELFEGVV 164 (175)
T ss_dssp --SEEEECBTTTTBSHHHHHHHHH
T ss_pred --CeEEEEecCCCCCHHHHHHHHH
Confidence 4699999999999999998876
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-17 Score=127.27 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=80.0
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
...+..+..+|+++|.+|+|||||+++|+...... . ... .+.......+.+ ++..+.+.||
T Consensus 14 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~------------~~~-t~~~~~~~~~~~----~~~~~~~~l~ 74 (190)
T 3con_A 14 LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVD--E------------YDP-TIEDSYRKQVVI----DGETCLLDIL 74 (190)
T ss_dssp -----CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--C------------CCT-TCCEEEEEEEEE----TTEEEEEEEE
T ss_pred ccccccceeEEEEECcCCCCHHHHHHHHHcCCCcc--c------------cCC-ccceEEEEEEEE----CCEEEEEEEE
Confidence 33334456799999999999999999998643210 0 000 111111112222 3445789999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHH
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTL 148 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~ 148 (257)
||||+.+|...+..++..+|++++|+|+++ +|+.... ..+..+++.+.
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 154 (190)
T 3con_A 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS 154 (190)
T ss_dssp ECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH
Confidence 999999999888899999999999999987 6764321 22233334444
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++ .+++++||++|.|+++++++|..
T Consensus 155 ~~---~~~~~~Sa~~~~gi~~l~~~l~~ 179 (190)
T 3con_A 155 YG---IPFIETSAKTRQGVEDAFYTLVR 179 (190)
T ss_dssp HT---CCEEECCTTTCTTHHHHHHHHHH
T ss_pred cC---CeEEEEeCCCCCCHHHHHHHHHH
Confidence 44 36999999999999999988763
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-18 Score=152.74 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=93.4
Q ss_pred CCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEE
Q psy12244 19 PYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLN 98 (257)
Q Consensus 19 ~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~ 98 (257)
.|...+....++|+++|++|+|||||+++|++.... ..+...+.|.+.....+.+... ..+.
T Consensus 25 sm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~-------------~~~~~~gtT~d~~~~~~~~~~~-----~~l~ 86 (423)
T 3qq5_A 25 TMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVS-------------IVSDYAGTTTDPVYKSMELHPI-----GPVT 86 (423)
T ss_dssp CCCC---CCCEEEEEECSCSTTTTTTTTSSCC--------------------------CCCCEEEEEETTT-----EEEE
T ss_pred ccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCC-------------ccCCCCCeeeeeEEEEEEECCC-----CeEE
Confidence 455666777899999999999999999999653321 1234567787777777776541 4899
Q ss_pred EeCCCCCcccH-------HHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHH
Q psy12244 99 LIDTPGHVDFS-------NEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQT 147 (257)
Q Consensus 99 liDtpG~~~~~-------~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~ 147 (257)
||||||+.+|. ..+...+..+|++|+|+|+.. +|+...+..+..+++.+
T Consensus 87 liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~ 166 (423)
T 3qq5_A 87 LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYES 166 (423)
T ss_dssp EEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSC
T ss_pred EEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHH
Confidence 99999998763 335667889999999999954 77765544433334333
Q ss_pred HhCCCccceEEecccccccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.++ .+++++||++|.|++++++.|..
T Consensus 167 ~~g---~~v~~vSAktg~gI~eL~~~L~~ 192 (423)
T 3qq5_A 167 RYE---AKVLLVSALQKKGFDDIGKTISE 192 (423)
T ss_dssp CTT---CCCCCCSSCCTTSTTTHHHHHHH
T ss_pred HcC---CCEEEEECCCCCCHHHHHHHHHH
Confidence 333 47999999999999999988874
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=146.23 Aligned_cols=132 Identities=18% Similarity=0.277 Sum_probs=95.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC-
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG- 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG- 104 (257)
....+|+++|++|+|||||+|+|++...... +...++|.+.....+.+.+ ..+.||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~-------------~~~~gtt~~~~~~~~~~~~------~~~~l~DT~G~ 253 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-------------SNVAGTTRDAVDTSFTYNQ------QEFVIVDTAGM 253 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-------------CC------CTTSEEEEETT------EEEEETTGGGT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcccc-------------CCCCCeEEEEEEEEEEECC------ceEEEEECCCC
Confidence 4568899999999999999999986433222 1245667776666676665 6899999999
Q ss_pred ---------CcccHHHH-HHhhhhcceEEEEEecCc--------------------------cCCCCCC---HHHHHHHH
Q psy12244 105 ---------HVDFSNEV-TRSLAACQGVVLLIDANQ--------------------------VDLKNAN---PEACEEQL 145 (257)
Q Consensus 105 ---------~~~~~~~~-~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~---~~~~~~~~ 145 (257)
++.|.... ..+++.+|++|+|+|++. +|+.+.+ .++..+.+
T Consensus 254 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~ 333 (456)
T 4dcu_A 254 RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENI 333 (456)
T ss_dssp TTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHH
T ss_pred CcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHH
Confidence 56666543 357889999999999987 7875433 35556666
Q ss_pred HHHhC-CCccceEEecccccccccccccccCC
Q psy12244 146 QTLFN-IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 ~~~~~-~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++.+. ....+++++||++|.|++++++.+..
T Consensus 334 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~ 365 (456)
T 4dcu_A 334 RDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 365 (456)
T ss_dssp HHHCGGGTTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred HHhcccCCCCCEEEEcCCCCcCHHHHHHHHHH
Confidence 66553 23468999999999999999988763
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=125.48 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=86.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++..... . .. .|....+.. .... ++....+.+|||||+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~------------~~--~t~~~~~~~-~~~~--~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRE--S------------YI--PTVEDTYRQ-VISC--DKSICTLQITDTTGSH 62 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCS--S------------CC--CCSCEEEEE-EEEE--TTEEEEEEEEECCSCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC--C------------CC--CCccccEEE-EEEE--CCEEEEEEEEECCCch
Confidence 35789999999999999999997532110 0 00 111111111 1111 3444789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCC--HHHHHHHHHHHhCCC
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNAN--PEACEEQLQTLFNID 152 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~--~~~~~~~~~~~~~~~ 152 (257)
+|...+..++..+|++++|+|+++ +|+.... .....+.+...++
T Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-- 140 (172)
T 2erx_A 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-- 140 (172)
T ss_dssp SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT--
T ss_pred hhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC--
Confidence 999999999999999999999987 5543211 1122223333333
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|.+
T Consensus 141 -~~~~~~Sa~~~~gi~~l~~~l~~ 163 (172)
T 2erx_A 141 -CAFMETSAKLNHNVKELFQELLN 163 (172)
T ss_dssp -CEEEECBTTTTBSHHHHHHHHHH
T ss_pred -CeEEEecCCCCcCHHHHHHHHHH
Confidence 46999999999999999998874
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-17 Score=128.60 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=88.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.....+|+++|.+|+|||||+++|++..... ...++.+.+.....+.+ ++....+.+|||||
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~l~i~Dt~g 81 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDS--------------AHEPENPEDTYERRIMV----DKEEVTLVVYDIWE 81 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCG--------------GGTTTSCTTEEEEEEEE----TTEEEEEEEECCCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCc--------------cCCCCcccceEEEEEEE----CCEEEEEEEEecCC
Confidence 3467899999999999999999995422211 01122222222223333 44557899999999
Q ss_pred CcccHH-HHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 105 HVDFSN-EVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 105 ~~~~~~-~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
+..+.. ....+++.+|++|+|+|+++ +|+.... ..+..+++.+.++
T Consensus 82 ~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~ 161 (195)
T 3cbq_A 82 QGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS 161 (195)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred CccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhC
Confidence 998765 55667889999999999986 6664322 1122223343333
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.|..
T Consensus 162 ---~~~~e~Sa~~~~~v~~lf~~l~~ 184 (195)
T 3cbq_A 162 ---CKHIETSAALHHNTRELFEGAVR 184 (195)
T ss_dssp ---CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred ---CEEEEEcCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=121.43 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=88.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+...... . ...... ......+.+ ++..+.+.+|||||+.+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~------------~~~~~~-~~~~~~~~~----~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--E------------CDPTIE-DSYRKQVVI----DGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS--C------------CCTTCC-EEEEEEEEE----TTEEEEEEEEECCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc--c------------cCCccc-eEEEEEEEE----CCEEEEEEEEECCCchh
Confidence 4689999999999999999997642211 0 000011 111112222 34457899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~ 155 (257)
+...+...+..+|++++|+|+++ +|+.... ..+..+++.+.++ .+
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~ 140 (166)
T 2ce2_X 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG---IP 140 (166)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT---CC
T ss_pred hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC---Ce
Confidence 99888889999999999999986 6764422 2333344444444 36
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.|+++++++|.
T Consensus 141 ~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 141 YIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EEEECTTTCTTHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988775
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-17 Score=143.49 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=86.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+|+|++|+|||||+++|+.... . . ...|+......+.+.. ..+.||||||+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~--~--------~-------~~pT~~~~~~~~~~~~------~~l~i~Dt~G~ 219 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEI--V--------T-------TIPTIGFNVETVEYKN------ISFTVWDVGGQ 219 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCC--E--------E-------EEEETTEEEEEEEETT------EEEEEEECC--
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCC--C--------C-------cccccceEEEEEecCc------EEEEEEECCCC
Confidence 4566899999999999999999954211 0 0 0123333344444444 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHh-CCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLF-NID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~-~~~ 152 (257)
+.|...+..+++.+|++|+|+|+++ +|+.+.. .+++.+.+.... ...
T Consensus 220 ~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~ 299 (329)
T 3o47_A 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 299 (329)
T ss_dssp ---CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSS
T ss_pred HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcC
Confidence 9999888999999999999999976 6775442 333333332211 123
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.||+++++.|..
T Consensus 300 ~~~~~~vSAk~g~gi~el~~~l~~ 323 (329)
T 3o47_A 300 NWYIQATCATSGDGLYEGLDWLSN 323 (329)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCEEEEEECCCCcCHHHHHHHHHH
Confidence 457999999999999999988763
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-18 Score=131.11 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=81.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++.... ....++.|.+.....+.+.+ ..+.+|||||+.+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~--------------~~~~~~~t~~~~~~~~~~~~------~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY--------------IGNWPGVTVEKKEGEFEYNG------EKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS--------------CC-----CCCCCEEEEEETT------EEEEEEECCCCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee--------------ccCCCCcceeeeEEEEEECC------cEEEEEECCCccc
Confidence 468999999999999999999653211 01123455555455555544 7899999999988
Q ss_pred cH------HHHHHhhh--hcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHHHHhCCCcc
Q psy12244 108 FS------NEVTRSLA--ACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~------~~~~~~~~--~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~~~~~~~~~ 154 (257)
|. .....+++ .+|++++|+|+.. +|+.... .....+++.+.++ .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~ 139 (165)
T 2wji_A 63 LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG---V 139 (165)
T ss_dssp SSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT---S
T ss_pred CCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhC---C
Confidence 64 22333443 7899999999986 3321100 0001233444444 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++.|.
T Consensus 140 ~~~~~SA~~~~~v~~l~~~l~ 160 (165)
T 2wji_A 140 KVVPLSAAKKMGIEELKKAIS 160 (165)
T ss_dssp CEEECBGGGTBSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 699999999999999998775
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-17 Score=125.75 Aligned_cols=128 Identities=15% Similarity=0.205 Sum_probs=88.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+...... . ... .+.......+.+ ++..+.+.||||||+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~------------~~~-t~~~~~~~~~~~----~~~~~~~~l~Dt~G~ 76 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--D------------YEP-TKADSYRKKVVL----DGEEVQIDILDTAGQ 76 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCC--S------------CCT-TCCEEEEEEEEE----TTEEEEEEEEECCCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC--c------------CCC-ccceEEEEEEEE----CCEEEEEEEEECCCC
Confidence 356899999999999999999998643110 0 001 111111112222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC---CHHHHHHHHHHHhCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA---NPEACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~---~~~~~~~~~~~~~~~ 151 (257)
.+|...+..+++.+|++++|+|+++ +|+... ..++.. ++.+.++
T Consensus 77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~~~- 154 (187)
T 2a9k_A 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK-NRAEQWN- 154 (187)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHH-HHHHHTT-
T ss_pred cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH-HHHHHcC-
Confidence 9999999999999999999999986 565332 122222 2222233
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 155 --~~~~~~Sa~~~~gi~~l~~~l~~ 177 (187)
T 2a9k_A 155 --VNYVETSAKTRANVDKVFFDLMR 177 (187)
T ss_dssp --CEEEECCTTTCTTHHHHHHHHHH
T ss_pred --CeEEEeCCCCCCCHHHHHHHHHH
Confidence 46999999999999999988763
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-18 Score=133.69 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=88.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+.... . ....|+......+.+.. ..+.+|||||+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~---------------~~~~t~~~~~~~~~~~~------~~~~~~Dt~G~ 76 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDV--V---------------TTVPTVGVNLETLQYKN------ISFEVWDLGGQ 76 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCC--E---------------EECSSTTCCEEEEEETT------EEEEEEEECCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCC--C---------------CcCCCCceEEEEEEECC------EEEEEEECCCC
Confidence 4567899999999999999999943211 0 00112222233344444 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHH-HhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQT-LFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~-~~~~~ 152 (257)
+++...+..+++.+|++++|+|+++ +|+.... .++..+.+.. .+...
T Consensus 77 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T 2x77_A 77 TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNR 156 (189)
T ss_dssp SSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSS
T ss_pred HhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCC
Confidence 9988777778899999999999986 6664432 2333332221 11222
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.|+++++++|..
T Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~l~~ 180 (189)
T 2x77_A 157 TWTIVKSSSKTGDGLVEGMDWLVE 180 (189)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ceEEEEccCCCccCHHHHHHHHHH
Confidence 347999999999999999988763
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=133.74 Aligned_cols=138 Identities=12% Similarity=0.092 Sum_probs=83.7
Q ss_pred CCCCCCC--CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEE
Q psy12244 19 PYEDIPI--ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYL 96 (257)
Q Consensus 19 ~~~~~~~--~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~ 96 (257)
.++.+|. .+.++|+++|.+|+|||||+++|++..... ....+.|.......+.+.. ..
T Consensus 18 ~~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~--------------~~~~~~t~~~~~~~~~~~~------~~ 77 (228)
T 2qu8_A 18 YFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDV--------------QSYSFTTKNLYVGHFDHKL------NK 77 (228)
T ss_dssp ----CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEE--------------ECC-----CEEEEEEEETT------EE
T ss_pred eeccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCcc--------------CCCCCcceeeeeeeeecCC------Ce
Confidence 4455565 567899999999999999999996532110 0112233333333333333 78
Q ss_pred EEEeCCCCC------ccc---HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC
Q psy12244 97 LNLIDTPGH------VDF---SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA 136 (257)
Q Consensus 97 ~~liDtpG~------~~~---~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~ 136 (257)
+.||||||+ +.. ...+...+..+|++|+|+|+++ +|+...
T Consensus 78 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 78 YQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp EEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred EEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 999999999 332 1223334677899999999975 566432
Q ss_pred C-H-HHHHHHHHHHhCCC--ccceEEecccccccccccccccCC
Q psy12244 137 N-P-EACEEQLQTLFNID--KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 137 ~-~-~~~~~~~~~~~~~~--~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. . ....+.++++.... ..+++++||++|.|+++++++|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (228)
T 2qu8_A 158 DSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACE 201 (228)
T ss_dssp -CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHH
Confidence 1 1 12222233322211 257999999999999999988863
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=135.01 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=87.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+++|++..... .....++.+.....+.+ ++....+.||||||+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 72 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM--------------DSKSTIGVEFATRTLEI----EGKRIKAQIWDTAGQ 72 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------------------CCSEEEEEEEE----TTEEEEEEEECCTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccceeEEEEEEE----CCEEEEEEEEECCCc
Confidence 567899999999999999999997643211 11122222222233333 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++|+|+|+++ +|+.... ..+....+.+..+
T Consensus 73 ~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--- 149 (223)
T 3cpj_B 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQ--- 149 (223)
T ss_dssp TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT---
T ss_pred cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC---
Confidence 9998888888999999999999987 5653211 1122223333333
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 150 ~~~~~~Sa~~~~gi~~l~~~l~~ 172 (223)
T 3cpj_B 150 LLFTETSALNSENVDKAFEELIN 172 (223)
T ss_dssp CEEEECCCC-CCCHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 57999999999999999988864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=126.63 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=89.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|++..... . ...|....+.. .... ++....+.||||||+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~--------------~~~t~~~~~~~-~~~~--~~~~~~~~l~Dt~G~ 66 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD--T--------------YIPTIEDTYRQ-VISC--DKSVCTLQITDTTGS 66 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC--T--------------TSCCCCEEEEE-EEEE--TTEEEEEEEEECCGG
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC--c--------------ccCccccceeE-EEEE--CCEEEEEEEEeCCCh
Confidence 356789999999999999999997632210 0 00111111111 1111 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCC-HHHHHHHHHHHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNAN-PEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~-~~~~~~~~~~~~~~~ 152 (257)
.+|...+..++..+|++++|+|+++ +|+.... .......+...++
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-- 144 (199)
T 2gf0_A 67 HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK-- 144 (199)
T ss_dssp GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT--
T ss_pred HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC--
Confidence 9999999999999999999999986 6664322 1222233333334
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 145 -~~~~~~Sa~~~~gi~~l~~~l~~ 167 (199)
T 2gf0_A 145 -CAFMETSAKMNYNVKELFQELLT 167 (199)
T ss_dssp -CEEEECBTTTTBSHHHHHHHHHH
T ss_pred -CeEEEEecCCCCCHHHHHHHHHH
Confidence 36999999999999999988864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-18 Score=131.88 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=84.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+..... ....|+......+.+.+ ..+.+|||||+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~i~Dt~G~ 72 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV-----------------TTKPTIGFNVETLSYKN------LKLNVWDLGGQ 72 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE-----------------EECSSTTCCEEEEEETT------EEEEEEEEC--
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC-----------------ccCCcCccceEEEEECC------EEEEEEECCCC
Confidence 56789999999999999999999532110 11122222233344443 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhCC---
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFNI--- 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~~--- 151 (257)
.++...+...+..+|++++|+|+++ +|+.+... .+++.+.++.
T Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~ 149 (183)
T 1moz_A 73 TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS---ASEVSKELNLVEL 149 (183)
T ss_dssp --CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC---HHHHHHHTTTTTC
T ss_pred HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC---HHHHHHHhCcccc
Confidence 9988888888999999999999876 66644321 1223333321
Q ss_pred --CccceEEecccccccccccccccC
Q psy12244 152 --DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 --~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+++++||++|.|+++++++|.
T Consensus 150 ~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 150 KDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp CSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred cCCceEEEEccCCCCcCHHHHHHHHH
Confidence 234789999999999999998876
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=124.71 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=85.1
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+..+..+|+++|.+|+|||||+++|+...-... ...|.......+.+ ++..+.+.|||||
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~----------------~~~t~~~~~~~~~~----~~~~~~l~i~Dt~ 75 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE----------------ESPEGGRFKKEIVV----DGQSYLLLIRDEG 75 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC----------------CCTTCEEEEEEEEE----TTEEEEEEEEECS
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC----------------cCCCcceEEEEEEE----CCEEEEEEEEECC
Confidence 345678999999999999999999976332110 00111111122333 4455788999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC--C--HHHHHHHHHHH
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA--N--PEACEEQLQTL 148 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~--~--~~~~~~~~~~~ 148 (257)
|+++|. +++.+|++++|+|+++ +|+... . ..+..+++.+.
T Consensus 76 G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~ 150 (184)
T 3ihw_A 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD 150 (184)
T ss_dssp SSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH
T ss_pred CChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH
Confidence 999886 6788999999999987 666311 1 12223333333
Q ss_pred hCCCccceEEecccccccccccccccCC
Q psy12244 149 FNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 149 ~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++ ..+++++||++|.|+++++++|..
T Consensus 151 ~~--~~~~~e~Sa~~~~gv~~lf~~l~~ 176 (184)
T 3ihw_A 151 LK--RCTYYETCATYGLNVERVFQDVAQ 176 (184)
T ss_dssp TT--TCEEEEEBTTTTBTHHHHHHHHHH
T ss_pred cC--CCeEEEecCCCCCCHHHHHHHHHH
Confidence 33 357999999999999999988763
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-17 Score=134.68 Aligned_cols=131 Identities=16% Similarity=0.161 Sum_probs=89.0
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhc-CccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMT-GTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~-~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
......+|+++|.+|+|||||+++|+... .... ....|.+.... .+.+ ++....+.||||
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~-------------~~t~~~~~~~~--~~~~----~~~~~~~~i~Dt 71 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-------------VATLGVEVHPL--VFHT----NRGPIKFNVWDT 71 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEE-------------ETTTTEEEEEE--EEEE----TTEEEEEEEEEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCC-------------CCccceeEEEE--EEEE----CCEEEEEEEEeC
Confidence 34567899999999999999999965422 1100 01122333222 2222 344578999999
Q ss_pred CCCcccHHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 103 PGHVDFSNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
||++.|...+..+++.+|++++|+|+++ +|+.+.........+.+..+
T Consensus 72 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--- 148 (221)
T 3gj0_A 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN--- 148 (221)
T ss_dssp CSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHT---
T ss_pred CChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcC---
Confidence 9999988888888999999999999987 66643321111112222223
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 149 ~~~~~~Sa~~~~gi~~l~~~l~~ 171 (221)
T 3gj0_A 149 LQYYDISAKSNYNFEKPFLWLAR 171 (221)
T ss_dssp CEEEECBGGGTBTTTHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-17 Score=156.35 Aligned_cols=106 Identities=46% Similarity=0.772 Sum_probs=77.5
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeec----------ccCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTS----------ILDG 92 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~----------~~~~ 92 (257)
..+.++|+|+|++|+|||||+++|++..+.+... ....++|....|+++|+|+......+.|.. ..++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4578999999999999999999999987766543 334667888899999999988877777751 0133
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.++|||||||.+|...+..+++.+|++|+|+|+.+
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~ 133 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE 133 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCC
Confidence 45899999999999999999999999999999999987
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-17 Score=127.67 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=90.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|+..... .. ....+.... ...+.+ ++..+.+.||||||+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~------------~~~t~~~~~-~~~~~~----~~~~~~~~i~Dt~G~ 81 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP--TA------------YVPTVFENF-SHVMKY----KNEEFILHLWDTAGQ 81 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC--SS------------CCCCSEEEE-EEEEEE----TTEEEEEEEEEECCS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCC--Cc------------cCCeeeeee-EEEEEE----CCEEEEEEEEECCCc
Confidence 46689999999999999999999764321 00 011111111 111222 445578899999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC----CHHHHHHHHHHHhCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA----NPEACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~----~~~~~~~~~~~~~~~ 151 (257)
++|...+..+++.+|++++|+|+++ +|+... ...+..+++.+.++.
T Consensus 82 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC 161 (194)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC
T ss_pred HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC
Confidence 9999888889999999999999987 677532 122333344444443
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. +++++||++|.|++++++.|..
T Consensus 162 ~--~~~~~Sa~~~~gi~~l~~~l~~ 184 (194)
T 3reg_A 162 V--AYIEASSVAKIGLNEVFEKSVD 184 (194)
T ss_dssp S--CEEECBTTTTBSHHHHHHHHHH
T ss_pred C--EEEEeecCCCCCHHHHHHHHHH
Confidence 2 3899999999999999988864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-18 Score=141.65 Aligned_cols=127 Identities=18% Similarity=0.247 Sum_probs=89.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+|+|++.... ....+|+|.+.....+.+.+ ..+.||||||+.+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~--------------v~~~~g~t~~~~~~~~~~~~------~~~~liDtpG~~~ 62 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQR--------------VGNWAGVTVERKEGQFSTTD------HQVTLVDLPGTYS 62 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEE--------------EEECTTSSSEEEEEEEECSS------CEEEEEECCCCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcc--------------cCCCCCeeEEEEEEEEEeCC------CceEEEECcCCCc
Confidence 468999999999999999999764311 11235677776666666654 6789999999988
Q ss_pred cHH----------HHHHh--hhhcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhC
Q psy12244 108 FSN----------EVTRS--LAACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFN 150 (257)
Q Consensus 108 ~~~----------~~~~~--~~~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~ 150 (257)
+.. ....+ ...+|++++|+|++. +|+.+. ......+.+.+.++
T Consensus 63 ~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg 142 (274)
T 3i8s_A 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLG 142 (274)
T ss_dssp SCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHT
T ss_pred cccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcC
Confidence 651 11222 368999999999987 343211 01112344555555
Q ss_pred CCccceEEecccccccccccccccCCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+|++++||++|.|++++++.|...
T Consensus 143 ---~~~i~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 143 ---CPVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp ---SCEEECCCGGGHHHHHHHHHHHTC
T ss_pred ---CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 469999999999999999988743
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-17 Score=134.59 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=87.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|.+|+|||||+++|++.... .......... .....+.. ..+....+.||||||+
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~--~~~~~~~~-~~~~~~~~~l~Dt~G~ 71 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE--------------KNYNATVGAV--NHPVTFLD-DQGNVIKFNVWDTAGQ 71 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT--------------CEEETTTTEE--EEEEEEEB-TTSCEEEEEEEEECSG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCcccee--eEEEEEEe-CCCcEEEEEEEecCCc
Confidence 45679999999999999999999642210 0001111111 11222221 0233378999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
+++...+...+..+|++|+|+|+++ +|+.... +...+...........+
T Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 150 (218)
T 4djt_A 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQ-KISKKLVMEVLKGKNYE 150 (218)
T ss_dssp GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCE
T ss_pred hhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCCc
Confidence 9988778888899999999999987 6764321 11122333333344567
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|+++++++|..
T Consensus 151 ~~~~Sa~~g~gv~~l~~~l~~ 171 (218)
T 4djt_A 151 YFEISAKTAHNFGLPFLHLAR 171 (218)
T ss_dssp EEEEBTTTTBTTTHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 999999999999999988864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=126.46 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=85.9
Q ss_pred CCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 20 ~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
|+.++..+..+|+++|.+|+|||||+++|+....... ......... ...+.+ ++....+.|
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--------------~~~t~~~~~-~~~~~~----~~~~~~~~l 80 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWE--------------YDPTLESTY-RHQATI----DDEVVSMEI 80 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--------------CCTTCCEEE-EEEEEE----TTEEEEEEE
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcc--------------cCCCCCceE-EEEEEE----CCEEEEEEE
Confidence 3444455678999999999999999999986432110 011111111 111222 344578999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHH
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQ 146 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~ 146 (257)
|||||+.+ ...+...++.+|++++|+|+++ +|+.... ..+....+.
T Consensus 81 ~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~ 159 (196)
T 2atv_A 81 LDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA 159 (196)
T ss_dssp EECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred EECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH
Confidence 99999998 6677788899999999999987 5553311 112222333
Q ss_pred HHhCCCccceEEecccccc-cccccccccC
Q psy12244 147 TLFNIDKKSVLRIWHRRCF-SCADCHRSLD 175 (257)
Q Consensus 147 ~~~~~~~~~~i~iSa~~g~-gi~~l~~~i~ 175 (257)
+.++ .+++++||++|. |+++++++|.
T Consensus 160 ~~~~---~~~~~~Sa~~g~~gi~~l~~~l~ 186 (196)
T 2atv_A 160 TELA---CAFYECSACTGEGNITEIFYELC 186 (196)
T ss_dssp HHHT---SEEEECCTTTCTTCHHHHHHHHH
T ss_pred HHhC---CeEEEECCCcCCcCHHHHHHHHH
Confidence 3333 469999999999 9999998876
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.2e-17 Score=129.22 Aligned_cols=130 Identities=16% Similarity=0.122 Sum_probs=86.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
.+..+|+++|++|+|||||+++|+..... .. ...|+... ...+.+ ++..+.+.||||||
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~--------------~~~t~~~~~~~~~~~----~~~~~~~~i~Dt~G 66 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TD--------------YIPTVFDNFSANVAV----DGQIVNLGLWDTAG 66 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC--SS--------------CCCSSCCCEEEEEEC----SSCEEEEEEECCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--cc--------------CCCccceeEEEEEEE----CCEEEEEEEEECCC
Confidence 46688999999999999999999763211 00 00111111 111222 44557899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH----------HHHHHH
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP----------EACEEQ 144 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~----------~~~~~~ 144 (257)
+++|...+..+++.+|++|+|+|+++ +|+..... .+..++
T Consensus 67 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 67 QEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEE 146 (212)
T ss_dssp CCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHH
T ss_pred cHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHH
Confidence 99998888889999999999999987 34322110 111223
Q ss_pred HHHHhCCCccceEEecccccccccccccccCCC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+.+.++. .+++++||++|.|+++++++|...
T Consensus 147 ~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 147 LRKQIGA--AAYIECSSKTQQNVKAVFDTAIKV 177 (212)
T ss_dssp HHHHHTC--SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHcCC--ceEEEccCCCCCCHHHHHHHHHHH
Confidence 3333342 369999999999999999988743
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-17 Score=140.39 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=85.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+|+|++|+|||||+|+|++....+... ..+.|.......+.+.. .+++||||||+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~-------------~~~tTr~~~~gi~~~~~------~~i~~iDTpG~ 66 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSR-------------KAQTTRHRIVGIHTEGA------YQAIYVDTPGL 66 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCC-------------CSSCCSSCEEEEEEETT------EEEEEESSSSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCC-------------CCCcceeeEEEEEEECC------eeEEEEECcCC
Confidence 355689999999999999999998754332211 12233322223333333 78999999999
Q ss_pred c-ccH--------HHHHHhhhhcceEEEEEecCc-------------------------cCCCCCCHHHHHHHHHHHhC-
Q psy12244 106 V-DFS--------NEVTRSLAACQGVVLLIDANQ-------------------------VDLKNANPEACEEQLQTLFN- 150 (257)
Q Consensus 106 ~-~~~--------~~~~~~~~~aD~~ilVvd~~~-------------------------~D~~~~~~~~~~~~~~~~~~- 150 (257)
. ... .....++..+|++++|+|+.. +|+.. +.....+.+.++..
T Consensus 67 ~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~ 145 (301)
T 1ega_A 67 HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQ 145 (301)
T ss_dssp CHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCc-cHHHHHHHHHHHHHh
Confidence 8 322 223446678999999999865 67654 12333333333222
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++|.|++++++.+..
T Consensus 146 ~~~~~~i~iSA~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 146 MNFLDIVPISAETGLNVDTIAAIVRK 171 (301)
T ss_dssp SCCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred cCcCceEEEECCCCCCHHHHHHHHHH
Confidence 12236899999999999999888764
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-18 Score=138.85 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=89.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+|+|++.... ....+|+|.+.....+.+.+ ..+.||||||+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~--------------~~~~pg~tv~~~~~~~~~~~------~~~~l~DtpG~ 62 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY--------------VANWPGVTVEKKEGVFTYKG------YTINLIDLPGT 62 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE--------------EEECTTSCCEEEEEEEEETT------EEEEEEECCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc--------------ccCCCCceEEEEEEEEEECC------eEEEEEECCCc
Confidence 35678999999999999999999753211 11234677766666665544 78999999999
Q ss_pred cccHH------HHHHhh--hhcceEEEEEecCc------------------------cCCCCCC-HHHHHHHHHHHhCCC
Q psy12244 106 VDFSN------EVTRSL--AACQGVVLLIDANQ------------------------VDLKNAN-PEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~------~~~~~~--~~aD~~ilVvd~~~------------------------~D~~~~~-~~~~~~~~~~~~~~~ 152 (257)
.++.. ....++ ..+|++++|+|++. +|+.... .....+.+.+.++
T Consensus 63 ~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-- 140 (258)
T 3a1s_A 63 YSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-- 140 (258)
T ss_dssp SSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--
T ss_pred CccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcC--
Confidence 87643 123333 47999999999987 3331100 0011344555555
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+|++++||++|.|++++++.+..
T Consensus 141 -~~vi~~SA~~g~gi~el~~~i~~ 163 (258)
T 3a1s_A 141 -IPVVFTSSVTGEGLEELKEKIVE 163 (258)
T ss_dssp -SCEEECCTTTCTTHHHHHHHHHH
T ss_pred -CCEEEEEeeCCcCHHHHHHHHHH
Confidence 46999999999999999998874
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-18 Score=138.05 Aligned_cols=130 Identities=16% Similarity=0.245 Sum_probs=84.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|+... +......+.+.+.....+.+ ++..+.+.||||||+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G~ 92 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT--------------YTESYISTIGVDFKIRTIEL----DGKTIKLQIWDTAGQ 92 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC--------------CCCHHHHHHCCSEEEEEEEE----TTEEEEEEEECCTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC--------------CCCCcCCcccceEEEEEEEE----CCEEEEEEEEECCCc
Confidence 457899999999999999999985321 11222333444433444444 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++|...+..+++.+|++|+|+|+++ +|+.... .....+.+.+.++
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--- 169 (199)
T 3l0i_B 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG--- 169 (199)
T ss_dssp TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT---
T ss_pred HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC---
Confidence 9988877888899999999999987 5653321 0111223333333
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|+++++++|..
T Consensus 170 ~~~~~vSA~~g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 170 IPFLETSAKNATNVEQSFMTMAA 192 (199)
T ss_dssp CCBCCCCC---HHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999998874
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-17 Score=134.11 Aligned_cols=135 Identities=10% Similarity=0.060 Sum_probs=87.6
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+..+..+|+|+|++|+|||||+|+|++........ ...++|.......+.+.+ ..+.|||||
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~------------~~~~~t~~~~~~~~~~~~------~~i~iiDTp 79 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKL------------GSQTLTKTCSKSQGSWGN------REIVIIDTP 79 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT------------TSCCCCCSCEEEEEEETT------EEEEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC------------CCCceeeeeEEEEEEeCC------CEEEEEECc
Confidence 34467899999999999999999998754332211 011145554445555655 789999999
Q ss_pred CCccc-----------HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHH
Q psy12244 104 GHVDF-----------SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEAC 141 (257)
Q Consensus 104 G~~~~-----------~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~ 141 (257)
|+.++ ......+++.+|++|+|+|+.. +|+.+.+....
T Consensus 80 G~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~ 159 (260)
T 2xtp_A 80 DMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDY 159 (260)
T ss_dssp GGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHH
Confidence 99764 2233346788999999999975 56654433332
Q ss_pred H--------HHHHHHhCCCccce--EEecccccccccccccccCC
Q psy12244 142 E--------EQLQTLFNIDKKSV--LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 142 ~--------~~~~~~~~~~~~~~--i~iSa~~g~gi~~l~~~i~~ 176 (257)
. ..+.+.++....++ +++||++|.|++++++.|..
T Consensus 160 i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~ 204 (260)
T 2xtp_A 160 MHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIED 204 (260)
T ss_dssp HHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHH
Confidence 1 11223333211112 89999999999999988864
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-17 Score=127.02 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=82.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|++....... ...+.|.+.....+.+.+ ..+.+|||||+.+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-------------~~~~~t~~~~~~~~~~~~------~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVT-------------DIAGTTRDVLREHIHIDG------MPLHIIDTAGLRE 64 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-------------SSTTCCCSCEEEEEEETT------EEEEEEECCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceee-------------CCCCceeceeeEEEEECC------eEEEEEECCCccc
Confidence 457999999999999999999764322111 123445554445555544 5689999999975
Q ss_pred cH--------HHHHHhhhhcceEEEEEecCccCCCCCCHHHHHHHHHHHh-----------------------CCCccce
Q psy12244 108 FS--------NEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQLQTLF-----------------------NIDKKSV 156 (257)
Q Consensus 108 ~~--------~~~~~~~~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 156 (257)
+. ......++.+|++++|+|+++-.. .......+.+.+.. .....++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s--~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~ 142 (172)
T 2gj8_A 65 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA--VDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHAL 142 (172)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC--CSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEE
T ss_pred chhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCC--HHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhhhhccCCce
Confidence 31 112345789999999999986221 11122222222211 0112368
Q ss_pred EEecccccccccccccccCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++||++|.|++++++.|..
T Consensus 143 ~~~SA~~g~gv~~l~~~l~~ 162 (172)
T 2gj8_A 143 IRLSARTGEGVDVLRNHLKQ 162 (172)
T ss_dssp EECCTTTCTTHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999988863
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=127.05 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=87.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|.+|+|||||+++|++...... ..+.++.... ..+.+ ++....+.||||||+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~-~~~~~----~~~~~~l~i~Dt~G~ 83 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV--------------YVPTVFENYI-ADIEV----DGKQVELALWDTAGQ 83 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSS--------------CCCSSCCCCE-EEEEE----TTEEEEEEEECCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcc--------------cCCcccceEE-EEEEE----CCEEEEEEEEECCCc
Confidence 3567899999999999999999976432110 0111111111 11222 344578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EAC 141 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~ 141 (257)
++|...+..+++.+|++++|+|+++ +|+..... .+.
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 163 (201)
T 2gco_A 84 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 163 (201)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHH
T ss_pred hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHH
Confidence 9998888888999999999999987 66644210 011
Q ss_pred HHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+.+.++ ..+++++||++|.|++++++.|.
T Consensus 164 ~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~ 195 (201)
T 2gco_A 164 GRDMANRIS--AFGYLECSAKTKEGVREVFEMAT 195 (201)
T ss_dssp HHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHhCC--CcEEEEeeCCCCCCHHHHHHHHH
Confidence 112222222 23689999999999999998775
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-17 Score=128.35 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=85.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|+...... . ....+.+.....+.+ ++..+.+.||||||+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~-------------~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG--E-------------YIPTVFDNYSANVMV----DGKPVNLGLWDTAGL 88 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC----------------CCCCSEEEEEEEEEC----C-CEEEEEEEEECCS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCC--C-------------cCCeecceeEEEEEE----CCEEEEEEEEECCCc
Confidence 456799999999999999999997632210 0 011111111222222 445578889999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EAC 141 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~ 141 (257)
++|...+..+++.+|++++|+|+++ +|+..... ...
T Consensus 89 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 4gzl_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHH
Confidence 9998888889999999999999987 34422110 001
Q ss_pred HHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...+.+.+ ...+++++||++|.|+++++++|.
T Consensus 169 ~~~~~~~~--~~~~~~~~SA~~g~gi~~l~~~l~ 200 (204)
T 4gzl_A 169 GLAMAKEI--GAVKYLECSALTQRGLKTVFDEAI 200 (204)
T ss_dssp HHHHHHHT--TCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHhc--CCcEEEEeeCCCCCCHHHHHHHHH
Confidence 11122222 234699999999999999998775
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-17 Score=132.71 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=63.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCc--cEEEEEeCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGE--EYLLNLIDTP 103 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~--~~~~~liDtp 103 (257)
.+..+|+++|++|+|||||+++|++...... .+....+..+.....+.+. +. ...+.|||||
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------~~~~~t~~~~~~~~~~~~~----~~~~~~~~~l~Dt~ 81 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFL------------KDYAMTSGVEVVVAPVTIP----DTTVSVELFLLDTA 81 (208)
T ss_dssp EEEEEEEEC----------------------------------------------CEEEECT----TSSEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCccc------------CCCCCccceEEEEEEEEEC----CcccEEEEEEEECC
Confidence 4567999999999999999999976411110 0111112222333334443 33 5789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCC-CC--HHHHHHHHHH
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKN-AN--PEACEEQLQT 147 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~-~~--~~~~~~~~~~ 147 (257)
|+++|...+..+++.+|++|+|+|+++ +|+.. .. ..+..+++.+
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~ 161 (208)
T 2yc2_C 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT 161 (208)
T ss_dssp TTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH
Confidence 999999888889999999999999987 34432 11 0112222333
Q ss_pred HhCCCccceEEecccc-cccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRR-CFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~-g~gi~~l~~~i~~ 176 (257)
.++ .+++++||++ |.|+++++++|..
T Consensus 162 ~~~---~~~~~~Sa~~~~~gi~~l~~~i~~ 188 (208)
T 2yc2_C 162 TNT---LDFFDVSANPPGKDADAPFLSIAT 188 (208)
T ss_dssp HTT---CEEEECCC-------CHHHHHHHH
T ss_pred HcC---CEEEEeccCCCCcCHHHHHHHHHH
Confidence 333 5799999999 9999999988863
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-18 Score=155.77 Aligned_cols=181 Identities=21% Similarity=0.193 Sum_probs=107.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc------------cCCcc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI------------LDGEE 94 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~------------~~~~~ 94 (257)
+.++|+++|++|+|||||+++|++...... ..+++|.......+.+... .+...
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~--------------e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~ 69 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR--------------EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETL 69 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc--------------cCCceecccCeEEEeechhhhhcccccccccccccc
Confidence 567899999999999999999986432110 0124444444333332200 00011
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCC-C----------
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNA-N---------- 137 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~-~---------- 137 (257)
..++|||||||++|...+..+++.+|++|+|+|+++ +|+... .
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHH
Confidence 369999999999999888888999999999999987 787531 1
Q ss_pred ----HHHHH-------HHHHHHh---CC------------CccceEEecccccccccccccccCCCcccCCCCCC-CCCC
Q psy12244 138 ----PEACE-------EQLQTLF---NI------------DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKP-DSKA 190 (257)
Q Consensus 138 ----~~~~~-------~~~~~~~---~~------------~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~-~~~~ 190 (257)
.+... .++.+.+ ++ ...|++++||++|.|+++|+++|..... ..+... ....
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~-~~~~~~l~~~~ 228 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ-QYLREQLKIEE 228 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH-HHCSGGGEECT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc-ccchhhhcccc
Confidence 01111 1111111 22 2347999999999999999988864211 000000 0001
Q ss_pred CCCCCcc-----hhhhcceeeEeeecccchhhHHHHH
Q psy12244 191 TPYEDIP-----IARIRNFSIIAHVDHGKSTLADRLL 222 (257)
Q Consensus 191 ~~~~~~~-----~~~~~~~~~~G~v~~Gk~~~~~~i~ 222 (257)
..+.... ..+.++....+.+.+|....++.+.
T Consensus 229 ~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~ 265 (594)
T 1g7s_A 229 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIA 265 (594)
T ss_dssp TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEE
T ss_pred CCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEE
Confidence 1111111 2233556667778888777776654
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-17 Score=128.28 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=80.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|++|+|||||+++|+..... . ...+.+.... ...+.+ ++....+.+|||||+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~--~------------~~~~t~~~~~-~~~~~~----~~~~~~~~i~Dt~G~ 66 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--T------------DYVPTVFDNF-SANVVV----NGATVNLGLWDTAGQ 66 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------C-BCCCC-----------CEEECCCC-
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--C------------CCCCeeeeeE-EEEEEE----CCEEEEEEEEECCCC
Confidence 45678999999999999999999763211 0 0001000000 001111 334467889999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH------------HHHHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP------------EACEE 143 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~------------~~~~~ 143 (257)
++|...+..+++.+|++++|+|+++ +|+.+... .+...
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence 9998888888999999999999986 44422111 11112
Q ss_pred HHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++.+.++. .+++++||++|.|++++++.|.+
T Consensus 147 ~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 147 ELKKLIGA--PAYIECSSKSQENVKGVFDAAIR 177 (182)
T ss_dssp HHHHHHTC--SEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCC--CEEEEEECCCCCCHHHHHHHHHH
Confidence 33333332 36999999999999999988763
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=124.18 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=85.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+++|++.... ... ... +.......+.+ ++....+.+|||||++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~------------~~t-~~~~~~~~~~~----~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEY------------IPT-VFDNYSANVMV----DGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSC------------CCC-SCCEEEEEEEE----TTEEEEEEEECCCCSG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCc------------CCc-ccceeEEEEEE----CCEEEEEEEEECCCCH
Confidence 4578999999999999999999763211 100 000 00111111222 3455788999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHHH
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EACE 142 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~~ 142 (257)
+|...+..+++.+|++++|+|+++ +|+..... .+..
T Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 144 (186)
T 1mh1_A 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 144 (186)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred hHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHH
Confidence 998888888999999999999987 34322110 0011
Q ss_pred HHHHHHhCCCccceEEecccccccccccccccCCC
Q psy12244 143 EQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 143 ~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
..+.+.++ ..+++++||++|.|++++++.|...
T Consensus 145 ~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 145 LAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp HHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhcC--CcEEEEecCCCccCHHHHHHHHHHH
Confidence 12222222 2379999999999999999888743
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-17 Score=128.58 Aligned_cols=127 Identities=17% Similarity=0.277 Sum_probs=86.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+.++|+++|++|+|||||+++|++.... .+..+++|.+.....+.+.+ ..+.+|||||+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~--------------~~~~~~~t~~~~~~~~~~~~------~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVY--------------IGNWPGVTVEKKEGEFEYNG------EKFKVVDLPGVY 65 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEE--------------EEECTTSCCEEEEEEEEETT------EEEEEEECCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--------------ccCCCCeeccceEEEEEeCC------cEEEEEECCCcC
Confidence 4578999999999999999999753211 11223555555555555544 789999999998
Q ss_pred ccH------HHHHHhhh--hcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhCCCc
Q psy12244 107 DFS------NEVTRSLA--ACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~------~~~~~~~~--~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~~~~ 153 (257)
+|. ......+. .+|++++|+|+.. +|+... ......+++.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--- 142 (188)
T 2wjg_A 66 SLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG--- 142 (188)
T ss_dssp CCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT---
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhC---
Confidence 873 22334443 4899999999986 232110 00011234444444
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.|++++++.+..
T Consensus 143 ~~~~~~Sa~~~~~v~~l~~~i~~ 165 (188)
T 2wjg_A 143 VKVVPLSAAKKMGIEELKKAISI 165 (188)
T ss_dssp SCEEECBGGGTBSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCHHHHHHHHHH
Confidence 46999999999999999988874
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-17 Score=143.68 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=74.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+|+|++....+ .....+.|.+.....+.+.+ +.+.||||||+.++
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~-------------vs~~~gtT~d~~~~~i~~~g------~~l~liDT~G~~~~ 294 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAI-------------VSHMPGTTRDYIEECFIHDK------TMFRLTDTAGLREA 294 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-------------------------------CEEEEETT------EEEEEEC-------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc-------------cCCCCCceEEEEEEEEEECC------eEEEEEECCCCCcc
Confidence 569999999999999999997643222 22345677776666677766 78999999999876
Q ss_pred HHH--------HHHhhhhcceEEEEEecCc----------------------------cCCCCCCHHHHHHHHHHHhCCC
Q psy12244 109 SNE--------VTRSLAACQGVVLLIDANQ----------------------------VDLKNANPEACEEQLQTLFNID 152 (257)
Q Consensus 109 ~~~--------~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~~~~~~~~~~~~~~~ 152 (257)
... +...+..+|++++|+|++. +|+....... .+++.+. +
T Consensus 295 ~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~-~~~l~~~-~-- 370 (476)
T 3gee_A 295 GEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADAL-IRAIADG-T-- 370 (476)
T ss_dssp -------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHH-HHHHHHH-H--
T ss_pred hhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchh-HHHHHhc-C--
Confidence 533 2346788999999999985 6665443222 1233332 1
Q ss_pred ccceEEecccccccccccccccCCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
..+++++||++|.|+++++++|...
T Consensus 371 ~~~~i~vSAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 371 GTEVIGISALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp TSCEEECBTTTTBSHHHHHHHHTHH
T ss_pred CCceEEEEECCCCCHHHHHHHHHHH
Confidence 1469999999999999999998853
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=127.93 Aligned_cols=130 Identities=13% Similarity=0.126 Sum_probs=72.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|+..... ......+. ......+.+ ++....+.||||||+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~--------------~~~~~t~~-~~~~~~~~~----~~~~~~l~l~Dt~G~ 92 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP--------------ESYTPTVF-ERYMVNLQV----KGKPVHLHIWDTAGQ 92 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------------------CCCCC-EEEEEEEEE----TTEEEEEEEEEC---
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC--------------CCCCCccc-eeEEEEEEE----CCEEEEEEEEECCCc
Confidence 35679999999999999999999742210 01111111 111112222 445578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH-H-------------HH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP-E-------------AC 141 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~-~-------------~~ 141 (257)
++|...+..++..+|++++|+|+++ +|+..... . +.
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp ------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHH
T ss_pred hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHH
Confidence 9999888889999999999999987 56543211 0 11
Q ss_pred HHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..++.+.++ ..+++++||++|.|++++++.|..
T Consensus 173 ~~~~~~~~~--~~~~~~~SA~~g~gi~el~~~l~~ 205 (214)
T 2j1l_A 173 GQEMARSVG--AVAYLECSARLHDNVHAVFQEAAE 205 (214)
T ss_dssp HHHHHHHTT--CSEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHH
Confidence 122233333 237999999999999999988764
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=128.27 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=88.1
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+..+..+|+++|.+|+|||||+++|+...... .....+.... ...+.+ ++..+.+.|||||
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~----~~~~~~l~i~Dt~ 83 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPE--------------TYVPTVFENY-TACLET----EEQRVELSLWDTS 83 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEEC------CEEEEEEEEEC
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCC--------------CcCCeeeeeE-EEEEEE----CCEEEEEEEEECC
Confidence 33456789999999999999999997633211 0011111111 111111 4455789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC--------------CHH
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA--------------NPE 139 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~--------------~~~ 139 (257)
|+++|...+..+++.+|++|+|+|+++ +|+.+. -..
T Consensus 84 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 163 (214)
T 3q3j_B 84 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISY 163 (214)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCH
T ss_pred CCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCH
Confidence 999998888889999999999999987 666431 112
Q ss_pred HHHHHHHHHhCCCccceEEeccccccc-ccccccccCCC
Q psy12244 140 ACEEQLQTLFNIDKKSVLRIWHRRCFS-CADCHRSLDST 177 (257)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~iSa~~g~g-i~~l~~~i~~~ 177 (257)
+...++.+.++. .+++++||++|.| ++++++.|...
T Consensus 164 ~~~~~~~~~~~~--~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 164 EQGCAIAKQLGA--EIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp HHHHHHHHHHTC--SEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CEEEEeccCCCcccHHHHHHHHHHH
Confidence 222333333442 2699999999998 99999988743
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.3e-17 Score=127.81 Aligned_cols=136 Identities=12% Similarity=0.084 Sum_probs=83.8
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
...+..+..+|+++|..|+|||||++++.+.... ....+...........+. ++....+.||
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~---~~~~~~l~i~ 74 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP---------------NETLFLESTNKIYKDDIS---NSSFVNFQIW 74 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCCCG---------------GGGGGCCCCCSCEEEEEC---CTTSCCEEEE
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCC---------------cceeeeccccceeeeecc---CCCeeEEEEE
Confidence 4455667889999999999999999987542111 011111111111222221 2344789999
Q ss_pred CCCCCcccHHHH---HHhhhhcceEEEEEecCc-------------------------------cCCCCCC-----HHHH
Q psy12244 101 DTPGHVDFSNEV---TRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-----PEAC 141 (257)
Q Consensus 101 DtpG~~~~~~~~---~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-----~~~~ 141 (257)
||||+++|.... ..+++.+|++|+|+|+++ +|+...+ ...+
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v 154 (196)
T 3llu_A 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDI 154 (196)
T ss_dssp ECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHH
T ss_pred ECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHH
Confidence 999999987776 788999999999999987 5654321 1111
Q ss_pred H----HHHHHHh-CCCccceEEecccccccccccccccC
Q psy12244 142 E----EQLQTLF-NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 142 ~----~~~~~~~-~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
. +++.+.. .....+++++||++ .|++++++.|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~ 192 (196)
T 3llu_A 155 HQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVV 192 (196)
T ss_dssp HHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHH
Confidence 1 1122211 02345799999999 99999987764
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-17 Score=135.05 Aligned_cols=126 Identities=14% Similarity=0.257 Sum_probs=89.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.++|+++|++|+|||||+|+|++.... ....+++|.+.....+.+.+ ..+.+|||||+.+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~--------------~~~~~~~t~~~~~~~~~~~~------~~~~l~DtpG~~~ 62 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQH--------------VGNWPGVTVEKKEGIMEYRE------KEFLVVDLPGIYS 62 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEE--------------EEECTTSSCEEEEEEEEETT------EEEEEEECCCCSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcc--------------cCCCCCeEEEeeEEEEEECC------ceEEEEeCCCccc
Confidence 578999999999999999999763221 11245667776666676665 6799999999988
Q ss_pred cHH------HHHHhh--hhcceEEEEEecCc-------------------------cCCCCC-CHHHHHHHHHHHhCCCc
Q psy12244 108 FSN------EVTRSL--AACQGVVLLIDANQ-------------------------VDLKNA-NPEACEEQLQTLFNIDK 153 (257)
Q Consensus 108 ~~~------~~~~~~--~~aD~~ilVvd~~~-------------------------~D~~~~-~~~~~~~~~~~~~~~~~ 153 (257)
|.. ....++ ..+|++++|+|++. +|+.+. ......+.+++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--- 139 (271)
T 3k53_A 63 LTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--- 139 (271)
T ss_dssp CCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS---
T ss_pred cccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcC---
Confidence 654 233333 57999999999987 222100 00001345555565
Q ss_pred cceEEecccccccccccccccCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+|++++||++|.|++++++.+..
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~i~~ 162 (271)
T 3k53_A 140 VPVIPTNAKKGEGVEELKRMIAL 162 (271)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999988874
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=126.59 Aligned_cols=130 Identities=12% Similarity=0.109 Sum_probs=85.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+|+|||||+++|++..... ...+.++... ...+.+ ++....+.||||||++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~----~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE--------------VYVPTVFENY-VADIEV----DGKQVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEE-EEEEEE----TTEEEEEEEEECTTCT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC--------------cCCCcccceE-EEEEEE----CCEEEEEEEEECCCcH
Confidence 45789999999999999999997633210 0111111111 111222 3455789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC-HH-------------HHH
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN-PE-------------ACE 142 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~-~~-------------~~~ 142 (257)
+|...+..++..+|++++|+|+++ +|+.... .. +..
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 164 (207)
T 2fv8_A 85 DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDG 164 (207)
T ss_dssp TCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHH
Confidence 998888888999999999999987 5553321 00 001
Q ss_pred HHHHHHhCCCccceEEecccccccccccccccCCC
Q psy12244 143 EQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 143 ~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
..+...++ ..+++++||++|.|+++++++|...
T Consensus 165 ~~~~~~~~--~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 165 RAMAVRIQ--AYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp HHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhcC--CCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 11112222 2268999999999999999988743
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-17 Score=129.89 Aligned_cols=131 Identities=16% Similarity=0.104 Sum_probs=85.4
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|++|+|||||+++|+.... . ..... .+.+.....+.+ ++..+.+.||||||
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~--~------------~~~~~-t~~~~~~~~~~~----~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGY--P------------TEYIP-TAFDNFSAVVSV----DGRPVRLQLCDTAG 77 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------------------C-CSSEEEEEEEEE----TTEEEEEEEEECCC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCC--C------------CCCCC-cccceeEEEEEE----CCEEEEEEEEECCC
Confidence 35677899999999999999999975321 0 01111 111111112222 34557889999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--------------HHH
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--------------PEA 140 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--------------~~~ 140 (257)
+++|...+..++..+|++++|+|+++ +|+.... ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 157 (201)
T 2q3h_A 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEE 157 (201)
T ss_dssp STTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHH
T ss_pred CHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHH
Confidence 99988877788899999999999987 5653310 111
Q ss_pred HHHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 141 CEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+...++ ..+++++||++|.|+++++++|..
T Consensus 158 ~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~ 191 (201)
T 2q3h_A 158 AAKLLAEEIK--AASYIECSALTQKNLKEVFDAAIV 191 (201)
T ss_dssp HHHHHHHHHT--CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhcC--CcEEEEEecCCCCCHHHHHHHHHH
Confidence 2223333333 236999999999999999988763
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-17 Score=138.13 Aligned_cols=125 Identities=15% Similarity=0.238 Sum_probs=83.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+|+|++..... ...+|.|.+.....+.+ ...+.+|||||+.+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v--------------~~~pg~tv~~~~~~~~~-------~~~l~l~DtpG~~~ 61 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV--------------GNWPGVTVERKSGLVKK-------NKDLEIQDLPGIYS 61 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC--------------CSSSCCCCSCEEEECTT-------CTTEEEEECCCCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc--------------cCCCCCcEEEEEEEEec-------CCeEEEEECCCcCc
Confidence 4689999999999999999997532111 11235565543333322 25789999999988
Q ss_pred cH------HHHHHhhh--hcceEEEEEecCc------------------------cCCCCC-CHHHHHHHHHHHhCCCcc
Q psy12244 108 FS------NEVTRSLA--ACQGVVLLIDANQ------------------------VDLKNA-NPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~------~~~~~~~~--~aD~~ilVvd~~~------------------------~D~~~~-~~~~~~~~~~~~~~~~~~ 154 (257)
|. .....++. .+|++++|+|++. +|+... ......+.+.+.++ +
T Consensus 62 ~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg---~ 138 (272)
T 3b1v_A 62 MSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLG---V 138 (272)
T ss_dssp SSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT---S
T ss_pred cCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC---C
Confidence 75 23344444 5999999999987 333110 00011234455555 4
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
|++++||++|.|++++++.|..
T Consensus 139 ~vi~~SA~~g~gi~el~~~i~~ 160 (272)
T 3b1v_A 139 PVVATSALKQTGVDQVVKKAAH 160 (272)
T ss_dssp CEEECBTTTTBSHHHHHHHHHH
T ss_pred CEEEEEccCCCCHHHHHHHHHH
Confidence 6999999999999999998864
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=125.85 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=87.2
Q ss_pred CCCCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCc
Q psy12244 14 DSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGE 93 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~ 93 (257)
+.....|+.. .....+|+++|.+|+|||||+++|++..... .....+.... ...+.+ ++.
T Consensus 15 ~~~~~~m~~~-~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~----~~~ 74 (205)
T 1gwn_A 15 VPRGSHMDPN-QNVKCKIVVVGDSQCGKTALLHVFAKDCFPE--------------NYVPTVFENY-TASFEI----DTQ 74 (205)
T ss_dssp -------------CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEES----SSS
T ss_pred cCCCCCCCcc-cceeeEEEEECCCCCCHHHHHHHHhcCCCCC--------------CcCCccceeE-EEEEEE----CCE
Confidence 3344455543 3456789999999999999999997632210 0011111111 111222 445
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC------
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN------ 137 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~------ 137 (257)
...+.||||||+++|...+..+++.+|++|+|+|+++ +|+....
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~ 154 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVEL 154 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHH
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhh
Confidence 6889999999999998877888899999999999986 5654210
Q ss_pred --------HHHHHHHHHHHhCCCccceEEeccc-ccccccccccccCC
Q psy12244 138 --------PEACEEQLQTLFNIDKKSVLRIWHR-RCFSCADCHRSLDS 176 (257)
Q Consensus 138 --------~~~~~~~~~~~~~~~~~~~i~iSa~-~g~gi~~l~~~i~~ 176 (257)
..+..+++.+.++ ..+++++||+ +|.|++++++.|.+
T Consensus 155 ~~~~~~~v~~~~~~~~~~~~~--~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 155 SNHRQTPVSYDQGANMAKQIG--AATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp HTTTCCCCCHHHHHHHHHHHT--CSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHcC--CCEEEEeeeccCCcCHHHHHHHHHH
Confidence 0111223333333 2469999999 69999999987763
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-16 Score=122.88 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=86.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+++|++..... ...+.+.... ...+.+ ++....+.||||||+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~----~~~~~~~~i~Dt~G~ 65 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--------------NYVPTVFENY-TASFEI----DTQRIELSLWDTSGS 65 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEEC----SSCEEEEEEEEECCS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeE-EEEEEE----CCEEEEEEEEECCCC
Confidence 456789999999999999999997632210 0011111111 111222 445578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--------------HHHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--------------PEAC 141 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--------------~~~~ 141 (257)
++|...+...++.+|++++|+|+++ +|+.... ..+.
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 145 (184)
T 1m7b_A 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ 145 (184)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHH
Confidence 9998877888899999999999986 5654210 0111
Q ss_pred HHHHHHHhCCCccceEEeccc-ccccccccccccCC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHR-RCFSCADCHRSLDS 176 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~-~g~gi~~l~~~i~~ 176 (257)
.+++.+.++ ..+++++||+ +|.|++++++.+.+
T Consensus 146 ~~~~~~~~~--~~~~~e~Sa~~~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 146 GANMAKQIG--AATYIECSALQSENSVRDIFHVATL 179 (184)
T ss_dssp HHHHHHHHT--CSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CcEEEEeeecCCCcCHHHHHHHHHH
Confidence 222333333 3479999999 69999999987764
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-17 Score=133.43 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=85.3
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
...+..+|+++|.+|+|||||+++|+...-. . + ....+.+.....+.+ ++....+.|||||
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~------------~-~~~t~~~~~~~~~~~----~~~~~~l~i~Dt~ 86 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFP--G------------E-YIPTVFDNYSANVMV----DGKPVNLGLWDTA 86 (204)
Confidence 3456789999999999999999999642210 0 0 000111111111111 3344678899999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH-----------HHHH
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP-----------EACE 142 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~-----------~~~~ 142 (257)
|+++|...+..+++.+|++++|+|+++ +|+..... ....
T Consensus 87 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~ 166 (204)
T 3th5_A 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 166 (204)
Confidence 999999888889999999999999876 33322110 0000
Q ss_pred HHHHHHhCCCcc-ceEEecccccccccccccccCC
Q psy12244 143 EQLQTLFNIDKK-SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 143 ~~~~~~~~~~~~-~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++..++...... +++++||++|.|++++++.|.+
T Consensus 167 ~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 167 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 111111111122 6899999999999999998863
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-16 Score=138.66 Aligned_cols=131 Identities=19% Similarity=0.210 Sum_probs=87.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+|+|++....+.. ...|.|.+.....+.+.+ ..+.+|||||+
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~-------------~~~gtT~d~~~~~i~~~g------~~~~l~Dt~G~ 238 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVS-------------PIPGTTRDPVDDEVFIDG------RKYVFVDTAGL 238 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-------------CCC------CCEEEEETT------EEEEESSCSCC
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccC-------------CCCCCcCCceEEEEEECC------EEEEEEECCCC
Confidence 34678999999999999999999865432221 134566666666677765 67899999998
Q ss_pred cccHHH------------HHHhhhhcceEEEEEecCc--------------------------cCCCCCC---HHHHHHH
Q psy12244 106 VDFSNE------------VTRSLAACQGVVLLIDANQ--------------------------VDLKNAN---PEACEEQ 144 (257)
Q Consensus 106 ~~~~~~------------~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~---~~~~~~~ 144 (257)
.++... ....+..+|++++|+|+.. +|+.+.+ .++..+.
T Consensus 239 ~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~ 318 (439)
T 1mky_A 239 RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKL 318 (439)
T ss_dssp -----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHH
Confidence 543321 2456788999999999875 6765432 3344445
Q ss_pred HHHHh-CCCccceEEecccccccccccccccC
Q psy12244 145 LQTLF-NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 145 ~~~~~-~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+.+.+ .....+++++||++|.|++++++.+.
T Consensus 319 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 350 (439)
T 1mky_A 319 FREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 350 (439)
T ss_dssp HHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHhccCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 54444 23446899999999999999998875
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-16 Score=142.89 Aligned_cols=125 Identities=19% Similarity=0.303 Sum_probs=92.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc-c
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV-D 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-~ 107 (257)
.+|+++|.+|+|||||+|+|++....+... ..+.|.+.....+.+.+ ..+.||||||+. +
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~-------------~~gTT~d~~~~~i~~~g------~~~~l~DTaG~~~~ 304 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-------------IPGTTRDVISEEIVIRG------ILFRIVDTAGVRSE 304 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCC-------------SSCCSSCSCCEEEEETT------EEEEEEESSCCCSS
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCC-------------CCCeeeeeEEEEEecCC------eEEEEEECCCcccc
Confidence 689999999999999999998864332221 34567676666677665 789999999998 5
Q ss_pred cH--------HHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 108 FS--------NEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~--------~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
+. ..+...+..+|++|+|+|+++ +|+..... .+++.+.++. ..+
T Consensus 305 ~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~---~~~~~~~~~~-~~~ 380 (482)
T 1xzp_A 305 TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKIN---EEEIKNKLGT-DRH 380 (482)
T ss_dssp CCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCC---HHHHHHHHTC-STT
T ss_pred chhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccC---HHHHHHHhcC-CCc
Confidence 42 345678899999999999875 77754311 1233333332 257
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++||++|.|+++|+++|..
T Consensus 381 ~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 381 MVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp EEEEEGGGTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998874
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=118.76 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=81.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+++|++..... . .+.+... ....+.+ ++....+.+|||||+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~-------------~~t~~~~-~~~~~~~----~~~~~~l~i~Dt~G~ 64 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV--L-------------EKTESEQ-YKKEMLV----DGQTHLVLIREEAGA 64 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC--C-------------SSCSSSE-EEEEEEE----TTEEEEEEEEECSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--c-------------CCCccee-EEEEEEE----CCEEEEEEEEECCCC
Confidence 356789999999999999999997643211 0 0111101 1112222 345578999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCC--C---CHHHHHHHHHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKN--A---NPEACEEQLQT 147 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~--~---~~~~~~~~~~~ 147 (257)
++ ..+++.+|++++|+|+++ +|+.. . ..++. +++..
T Consensus 65 ~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-~~~~~ 138 (178)
T 2iwr_A 65 PD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA-RALXA 138 (178)
T ss_dssp CC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH-HHHHH
T ss_pred ch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH-HHHHH
Confidence 87 346788999999999987 66621 1 12222 22333
Q ss_pred HhCCCccceEEecccccccccccccccC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+ ...+++++||++|.|++++++.|.
T Consensus 139 ~~--~~~~~~~~Sa~~~~~i~~lf~~l~ 164 (178)
T 2iwr_A 139 DM--KRCSYYETXATYGLNVDRVFQEVA 164 (178)
T ss_dssp HH--SSEEEEEEBTTTTBTHHHHHHHHH
T ss_pred hh--cCCeEEEEeccccCCHHHHHHHHH
Confidence 22 235799999999999999998876
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-16 Score=122.91 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=81.3
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
..+..+|+++|.+|+|||||+++|++.... .. ....+.... ...+.+ ++....+.||||||
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~------------~~~t~~~~~-~~~~~~----~~~~~~l~i~Dt~G 78 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFI--SE------------YDPNLEDTY-SSEETV----DHQPVHLRVMDTAD 78 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCC--SC------------CCTTCCEEE-EEEEEE----TTEEEEEEEEECCC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCC--cc------------cCCCcccee-eEEEEE----CCEEEEEEEEECCC
Confidence 356789999999999999999999864311 00 001111111 111222 44557899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc---------------------------------cCCCCCC--HHHHHHHHHHHh
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ---------------------------------VDLKNAN--PEACEEQLQTLF 149 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~~~~~--~~~~~~~~~~~~ 149 (257)
+++|.. +..+++.+|++++|+|+++ +|+.... ..+..+++.+.+
T Consensus 79 ~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~ 157 (187)
T 3c5c_A 79 LDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF 157 (187)
T ss_dssp ---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH
T ss_pred CCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc
Confidence 998765 3568889999999999987 4543211 112223333334
Q ss_pred CCCccceEEecc-cccccccccccccC
Q psy12244 150 NIDKKSVLRIWH-RRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~~~~~~i~iSa-~~g~gi~~l~~~i~ 175 (257)
+ .+++++|| ++|.|++++++.|.
T Consensus 158 ~---~~~~e~Sa~~~g~gv~~lf~~l~ 181 (187)
T 3c5c_A 158 G---CLFFEVSACLDFEHVQHVFHEAV 181 (187)
T ss_dssp T---CEEEECCSSSCSHHHHHHHHHHH
T ss_pred C---CcEEEEeecCccccHHHHHHHHH
Confidence 4 46999999 89999999988775
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-16 Score=123.81 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=83.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|.+|+|||||+++|++....+... ...++.+.....+.+ ++....+.+|||+|.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-------------~~~~g~d~~~~~i~~----~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-------------CEVLGEDTYERTLMV----DGESATIILLDMWEN 97 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTEEEEEEEE----TTEEEEEEEECCTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-------------CCccceeeEEEEEEE----CCeeeEEEEeecCCC
Confidence 456789999999999999999997533222111 001111111122222 445578899999999
Q ss_pred cc-cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-H-HHHHHHHHHHhCC
Q psy12244 106 VD-FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-P-EACEEQLQTLFNI 151 (257)
Q Consensus 106 ~~-~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~-~~~~~~~~~~~~~ 151 (257)
.. +......+++.+|++|+|+|.++ +|+.+.. . .+..+.+...++
T Consensus 98 ~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~- 176 (211)
T 2g3y_A 98 KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD- 176 (211)
T ss_dssp THHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-
T ss_pred cchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-
Confidence 87 33344445678999999999987 5653211 1 111122233333
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++++||++|.||+++++.|..
T Consensus 177 --~~~~e~SAk~g~~v~elf~~l~~ 199 (211)
T 2g3y_A 177 --CKFIETSAAVQHNVKELFEGIVR 199 (211)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHHH
T ss_pred --CEEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999988863
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-16 Score=131.90 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=88.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+++|+...... .....+.|++.....+.+.+ ...+.+|||||+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~-------------~~~~~~~Ti~~~~~~~~~~~-----~~~l~i~Dt~G~~~ 64 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF-------------DTRRLGATIDVEHSHLRFLG-----NMTLNLWDCGGQDV 64 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG-------------GGGGCCCCCSEEEEEEEETT-----TEEEEEEEECCSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-------------cccCcCCccceEEEEEEeCC-----ceEEEEEECCCcHH
Confidence 4689999999999999999996532211 12245667766666555421 37899999999999
Q ss_pred c-----HHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCCHH-----HHHHHH
Q psy12244 108 F-----SNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNANPE-----ACEEQL 145 (257)
Q Consensus 108 ~-----~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~~~-----~~~~~~ 145 (257)
| ...+...++.+|++|+|+|+++ +|+.+.+.. ...+++
T Consensus 65 ~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~ 144 (307)
T 3r7w_A 65 FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNL 144 (307)
T ss_dssp HHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHH
Confidence 8 4455667789999999999987 666542111 122333
Q ss_pred ---HHHhCCCccceEEecccccccccccccccC
Q psy12244 146 ---QTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 146 ---~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+.++.+..+++++||++ .|+.+++..+.
T Consensus 145 ~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 145 SETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp HHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHH
Confidence 333344357899999999 77766665544
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=119.79 Aligned_cols=130 Identities=13% Similarity=0.111 Sum_probs=80.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+|+|||||+++|++....+... ...++.+.....+.+ ++....+.+|||+|..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-------------XEVLGEDTYERTLMV----DGESATIILLDMWENK 67 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----------------GGGCTTEEEEEEEE----TTEEEEEEEECCCCC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-------------ccccceeEEEEEEEE----CCeEEEEEEEEeccCc
Confidence 45789999999999999999998644322111 011111211222333 4455678899999986
Q ss_pred c-cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-H-HHHHHHHHHHhCCC
Q psy12244 107 D-FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-P-EACEEQLQTLFNID 152 (257)
Q Consensus 107 ~-~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~-~~~~~~~~~~~~~~ 152 (257)
. +......+++.+|++++|+|.++ +|+.... . ......+...++
T Consensus 68 ~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-- 145 (192)
T 2cjw_A 68 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-- 145 (192)
T ss_dssp ---CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT--
T ss_pred chhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC--
Confidence 5 22233445678999999999987 5553211 1 111112222222
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++++++||++|.||+++++.|..
T Consensus 146 -~~~~e~SA~~g~~v~~lf~~l~~ 168 (192)
T 2cjw_A 146 -XKFIETSAAVQHNVKELFEGIVR 168 (192)
T ss_dssp -CEEEECBTTTTBSHHHHHHHHHH
T ss_pred -CceEEeccccCCCHHHHHHHHHH
Confidence 46999999999999999988863
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-16 Score=141.43 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=77.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+|+|++....+... ..+.|.+.....+.+.+ ..+.||||||+.++
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-------------~~gtT~d~~~~~i~~~g------~~v~liDT~G~~~~ 285 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-------------LPGTTRDVVESQLVVGG------IPVQVLDTAGIRET 285 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSC-------------CTTCCHHHHHHEEEETT------EEEEECC-------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccC-------------CCCeeEEEEEEEEEECC------EEEEEEECCccccc
Confidence 579999999999999999998865443221 23445554444555555 78999999999775
Q ss_pred HHH--------HHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 109 SNE--------VTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~--------~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
... ....+..+|++++|+|++. +|+....... .+.++ ....++
T Consensus 286 ~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~---~~~~~--~~~~~~ 360 (462)
T 3geh_A 286 SDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLIT---SLEYP--ENITQI 360 (462)
T ss_dssp -------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGST---TCCCC--TTCCCE
T ss_pred hhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhH---HHHHh--ccCCcE
Confidence 433 2335678999999999985 4443221100 11110 023468
Q ss_pred EEecccccccccccccccCC
Q psy12244 157 LRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++||++|.|+++|++.|..
T Consensus 361 i~iSAktg~Gi~eL~~~i~~ 380 (462)
T 3geh_A 361 VHTAAAQKQGIDSLETAILE 380 (462)
T ss_dssp EEEBTTTTBSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-15 Score=119.73 Aligned_cols=129 Identities=18% Similarity=0.252 Sum_probs=86.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|+.|+|||||+++|++..... ...+.++.+.....+.+ ++....+.+|||||++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~--------------~~~~t~~~~~~~~~i~~----~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVEFATRSIQV----DGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----------------CCCSCEEEEEEEEE----TTEEEEEEEEECSSGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEE----CCEEEEEEEEECCCch
Confidence 46789999999999999999997643211 11122223333334444 3445678899999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
.+...+...++.+|++++|+|... +|+.+.. .......+... ...
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~---~~~ 142 (199)
T 2f9l_A 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK---NNL 142 (199)
T ss_dssp GTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH---TTC
T ss_pred hhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHH---cCC
Confidence 887766777788999999999886 5543211 11112222222 234
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||+++.|++++++.|..
T Consensus 143 ~~~d~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 143 SFIETSALDSTNVEEAFKNILT 164 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 6899999999999999988763
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-15 Score=117.25 Aligned_cols=123 Identities=19% Similarity=0.221 Sum_probs=80.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC----
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG---- 104 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG---- 104 (257)
.+|+++|++|+|||||+++|++.... ....++.|... ..+.+. .+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~t~~~--~~~~~~--------~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR--------------RGKRPGVTRKI--IEIEWK--------NHKIIDMPGFGFM 57 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS--------------SSSSTTCTTSC--EEEEET--------TEEEEECCCBSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc--------------cCCCCCcccee--EEEecC--------CEEEEECCCcccc
Confidence 57999999999999999999753211 11122333322 222221 478999999
Q ss_pred -------CcccHHHHHHhhh----hcceEEEEEecCc-------------------------------------cCCCCC
Q psy12244 105 -------HVDFSNEVTRSLA----ACQGVVLLIDANQ-------------------------------------VDLKNA 136 (257)
Q Consensus 105 -------~~~~~~~~~~~~~----~aD~~ilVvd~~~-------------------------------------~D~~~~ 136 (257)
++.|...+..+++ .+++++.|+|+.. +|+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 58 MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence 4455555554444 4567888888752 666543
Q ss_pred CHHHHHHHHHHHhCCCc----cceEEecccccccccccccccCC
Q psy12244 137 NPEACEEQLQTLFNIDK----KSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 137 ~~~~~~~~~~~~~~~~~----~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. .+..+++.+.++... .+++++||++|.|+++++++|..
T Consensus 138 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 180 (190)
T 2cxx_A 138 V-QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE 180 (190)
T ss_dssp H-HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHH
Confidence 2 344555666666542 35799999999999999988863
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-15 Score=138.01 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=82.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeE--------EEeecccCCccEEE
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTAS--------LRYTSILDGEEYLL 97 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~--------~~~~~~~~~~~~~~ 97 (257)
.+..+|+++|.+|+|||||+++|++.... . ....|+...... +.... ++....+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--------------~--~~~~t~g~~~~~~~~~~~~~v~~~~--~~~~~~~ 100 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD--------------P--KESQTHGLNVVTKQAPNIKGLENDD--ELKECLF 100 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---------------------------CCCEEEEEGGGSGGGTTCS--TTTTCEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC--------------C--CCCCccceEEEEeccccccceeecC--CCceEEE
Confidence 45678999999999999999999753210 0 111122111111 11111 2345789
Q ss_pred EEeCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCC
Q psy12244 98 NLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 98 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~ 151 (257)
.+|||||++.|.......++.+|++|+|+|++. +|+.+... ...+++++.+..
T Consensus 101 ~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~-v~~~~~~~~~~~ 179 (535)
T 3dpu_A 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYN-IEQKKINERFPA 179 (535)
T ss_dssp EEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCC-CCHHHHHHHCGG
T ss_pred EEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccc-cCHHHHHHHHHh
Confidence 999999999988877788889999999999986 67654221 112333333332
Q ss_pred CccceEEecccccccccccccccCC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+++++||++|.|++++++.|..
T Consensus 180 ~~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 180 IENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp GTTCEEECCC-----CTTHHHHHHH
T ss_pred cCCceEEEecCcccCHHHHHHHHHH
Confidence 3356999999999999999988864
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-15 Score=117.82 Aligned_cols=134 Identities=14% Similarity=0.212 Sum_probs=78.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|+|||||+++|++..... .....+.+..+.....+.+.. .++....+.+|||||+++|
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~------------~~~~~~t~g~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~ 69 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSD------------LGMQSATVGIDVKDWPIQIRD-KRKRDLVLNVWDFAGREEF 69 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------------------CSEEEEEEEC----------CEEEEEEECSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCcc------------CCCcceeccEEeEEeeecccc-CCCCceEEEEEecCCCHHH
Confidence 579999999999999999996421111 001112222222222221110 0123468999999999988
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH-HHHHHHH-HHHhCCCccc-
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP-EACEEQL-QTLFNIDKKS- 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~-~~~~~~~-~~~~~~~~~~- 155 (257)
......+++.+|++++|+|.++ +|+.+... ....... ..+......+
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T 2zej_A 70 YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPA 149 (184)
T ss_dssp HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCE
T ss_pred HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcc
Confidence 8777778889999999999876 45543211 0011122 2222111233
Q ss_pred ---eEEecccccc-cccccccccC
Q psy12244 156 ---VLRIWHRRCF-SCADCHRSLD 175 (257)
Q Consensus 156 ---~i~iSa~~g~-gi~~l~~~i~ 175 (257)
++++||++|. |+++|++.|.
T Consensus 150 ~~~~~~~Sa~~~~~~~~~l~~~i~ 173 (184)
T 2zej_A 150 IRDYHFVNATEESDALAKLRKTII 173 (184)
T ss_dssp EEEEEECCTTSCCHHHHHHHHHHH
T ss_pred hhheEEEecccCchhHHHHHHHHH
Confidence 8999999996 9999988775
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-15 Score=127.24 Aligned_cols=129 Identities=12% Similarity=0.048 Sum_probs=85.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+|+|||||+++|+..... .. ....+.+.....+.. ++....+.||||||++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~--~~-------------~~~t~~~~~~~~~~~----~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP--GE-------------YIPTVFDNYSANVMV----DGKPVNLGLWDTAGLE 214 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC--CS-------------CCCCSEEEEEEEEEE----TTEEEEEEEEEECCCG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC--cc-------------cCCcccceeEEEEEE----CCEEEEEEEEeCCCch
Confidence 3478999999999999999999763211 00 011111111222222 4455778899999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--------------HHHHH
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--------------PEACE 142 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--------------~~~~~ 142 (257)
+|...+..+++.+|++++|+|+++ +|+.... .....
T Consensus 215 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred hhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence 998888888999999999999987 3332210 00011
Q ss_pred HHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 143 EQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 143 ~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+.+.++ ..+++++||++|.|++++++.|..
T Consensus 295 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~ 326 (332)
T 2wkq_A 295 LAMAKEIG--AVKYLECSALTQRGLKTVFDEAIR 326 (332)
T ss_dssp HHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHcC--CcEEEEecCCCCcCHHHHHHHHHH
Confidence 11222222 237999999999999999987763
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=121.73 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=70.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
....+|+++|++|+|||||+|+|+.......... .......++++.+ .....+.. ++....+++|||||+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~------~~~~~~~~t~~~~--~~~~~~~~--~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP------GPSHRIKKTVQVE--QSKVLIKE--GGVQLLLTIVDTPGF 75 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------------CCCE--EEEEEECC----CCEEEEEEECCCC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCC------CcccccCCceEEE--EEEEEEec--CCeEEEEEEEECCCc
Confidence 3467899999999999999999865322211000 0000012223333 33333322 344568999999998
Q ss_pred cc-------cHHHH-------HHhhhh-------------cceEEEEEecCc--------------------------cC
Q psy12244 106 VD-------FSNEV-------TRSLAA-------------CQGVVLLIDANQ--------------------------VD 132 (257)
Q Consensus 106 ~~-------~~~~~-------~~~~~~-------------aD~~ilVvd~~~--------------------------~D 132 (257)
.+ +.... ..++.. +|+++++++... +|
T Consensus 76 ~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D 155 (274)
T 3t5d_A 76 GDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKAD 155 (274)
T ss_dssp SCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGG
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccC
Confidence 43 22222 333333 678888886554 55
Q ss_pred CCCC-CHHHHHHHHHHHhCCCccceEEecccccccccccccccCCC
Q psy12244 133 LKNA-NPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 133 ~~~~-~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
+... ......+.+.+.+.....+++++||++|+|++++++.|...
T Consensus 156 ~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 156 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 4321 12333444555443344568999999999999999888743
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-15 Score=126.24 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=85.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
.+|+++|.+|+|||||+++|+.....+. .....|..+....+.+.. ...+.||||||+..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~--------------~~~ftTl~p~~g~v~~~~-----~~~~~l~DtPG~i~~ 219 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIA--------------DYHFTTLVPNLGMVETDD-----GRSFVMADLPGLIEG 219 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEES--------------STTSSCCCCCEEEEECSS-----SCEEEEEEHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccc--------------cCCccccCceEEEEEeCC-----CceEEEecCCCCccc
Confidence 4799999999999999999965322111 122345555555555432 15789999999643
Q ss_pred ------cHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCCHHHHHHHHH
Q psy12244 108 ------FSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNANPEACEEQLQ 146 (257)
Q Consensus 108 ------~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~~~~~~~~~~ 146 (257)
+.......+..+|++|+|+|++. +|+.. ..+..++++
T Consensus 220 a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~--~~e~~~~l~ 297 (342)
T 1lnz_A 220 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE--AAENLEAFK 297 (342)
T ss_dssp TTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT--HHHHHHHHH
T ss_pred ccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC--CHHHHHHHH
Confidence 44556666778999999999952 44432 223344555
Q ss_pred HHhCCCccceEEecccccccccccccccCC
Q psy12244 147 TLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 147 ~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.+... .+++++||++|.|+++|++.|..
T Consensus 298 ~~l~~~-~~v~~iSA~tg~gi~eL~~~l~~ 326 (342)
T 1lnz_A 298 EKLTDD-YPVFPISAVTREGLRELLFEVAN 326 (342)
T ss_dssp HHCCSC-CCBCCCSSCCSSTTHHHHHHHHH
T ss_pred HHhhcC-CCEEEEECCCCcCHHHHHHHHHH
Confidence 555422 56899999999999999988863
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-15 Score=116.87 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=84.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+...+|+++|+.|+|||||+++|++..... ...+.++.+.....+.+ ++....+.+|||||+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~--------------~~~~t~~~~~~~~~i~~----~g~~~~~~i~Dt~g~ 88 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVEFATRSIQV----DGKTIKAQIWDTAGL 88 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC--------------SCCCCCSEEEEEEEEEE----TTEEEEEEEEEECSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCccceEEEEEEEEE----CCEEEEEEEEECCCC
Confidence 456789999999999999999997643211 01122333333344444 334467788999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+++...+...++.+|++++|+|... +|+.+.. .......+... ..
T Consensus 89 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~---~~ 165 (191)
T 1oix_A 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK---NG 165 (191)
T ss_dssp CSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH---TT
T ss_pred cchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH---cC
Confidence 9887777777788999999999765 3332110 11112222222 23
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..++.+||+++.|++++++.|.
T Consensus 166 ~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 166 LSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CEEEECCTTTCTTHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHH
Confidence 4688999999999999887764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=116.49 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=58.6
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeC
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLID 101 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liD 101 (257)
..+....++|+++|++|+|||||+|+|++....... ....++|.......+.+.+ ..+.|||
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~------------~~~~~~t~~~~~~~~~~~~------~~i~liD 84 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSG------------TAAKSITKKCEKRSSSWKE------TELVVVD 84 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------------------CCSCEEEEEEETT------EEEEEEE
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccC------------CCCCceeeeEEEEEEEeCC------ceEEEEE
Confidence 445567889999999999999999999764331100 1112455555555566655 7899999
Q ss_pred CCCCcc-----------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 102 TPGHVD-----------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 102 tpG~~~-----------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|||+.+ +...+...+..+|++|+|+|++.
T Consensus 85 TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~ 124 (239)
T 3lxx_A 85 TPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR 124 (239)
T ss_dssp CCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC
T ss_pred CCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC
Confidence 999653 33444445567899999999865
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-14 Score=121.53 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=81.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
..+.|+++|++|+|||||+|+|++... ..+...+.|.+.....+.+.+ ..+.+|||||+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~--------------~~~~~~~~T~d~~~~~i~~~g------~~v~l~DT~G~i 237 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ--------------KVDTKLFTTMSPKRYAIPINN------RKIMLVDTVGFI 237 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-------------------------CCSCEEEEEETT------EEEEEEECCCBC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc--------------cccCCcccccCCEEEEEEECC------EEEEEEeCCCch
Confidence 345699999999999999999975321 112234566666666677655 678999999973
Q ss_pred c-----c---HHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCCHHHHHHHH-
Q psy12244 107 D-----F---SNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNANPEACEEQL- 145 (257)
Q Consensus 107 ~-----~---~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~~~~~~~~~- 145 (257)
+ + ...+...+..+|++++|+|++. +|+.........+.+
T Consensus 238 ~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~ 317 (364)
T 2qtf_A 238 RGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVE 317 (364)
T ss_dssp SSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHH
Confidence 2 1 1234456788999999999864 444332222211122
Q ss_pred --HHHhCCCccceEEecccccccccccccccCC
Q psy12244 146 --QTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 --~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+.....+++++||++|.|++++++.|..
T Consensus 318 ~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 318 KLSKELYSPIFDVIPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHH
Confidence 2223122336899999999999999988863
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-14 Score=122.47 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=79.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|+|||||+|+|++..... ....+.|.......+...+ ..+.+|||||+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~--------------~~~~~~t~~~~~~~~~~~~------~~~~l~Dt~G~ 224 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEI--------------ASYPFTTRGINVGQFEDGY------FRYQIIDTPGL 224 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEE--------------ECCTTCSSCEEEEEEEETT------EEEEEEECTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc--------------CCCCCeeeceeEEEEEecC------ceEEEEeCCCc
Confidence 356789999999999999999996532111 0112233333333333333 68999999998
Q ss_pred cccH---------HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHH
Q psy12244 106 VDFS---------NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQL 145 (257)
Q Consensus 106 ~~~~---------~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~ 145 (257)
.++. .........+|++++|+|++. +|+.. ... .+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~--~~~-~~~~ 301 (357)
T 2e87_A 225 LDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD--EEN-IKRL 301 (357)
T ss_dssp SSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC--HHH-HHHH
T ss_pred cccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC--hHH-HHHH
Confidence 6531 122223346899999999764 33322 111 1222
Q ss_pred HHHhCCCccceEEecccccccccccccccCC
Q psy12244 146 QTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 146 ~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+.+.....+++++||++|+|+++++++|..
T Consensus 302 ~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~ 332 (357)
T 2e87_A 302 EKFVKEKGLNPIKISALKGTGIDLVKEEIIK 332 (357)
T ss_dssp HHHHHHTTCCCEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEEeCCCCcCHHHHHHHHHH
Confidence 2222112356899999999999999988863
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-14 Score=119.26 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=53.0
Q ss_pred EEEEEeCCCCCc-------------ccHHHHHHhhhhcceEE-EEEecCc---------------------------cCC
Q psy12244 95 YLLNLIDTPGHV-------------DFSNEVTRSLAACQGVV-LLIDANQ---------------------------VDL 133 (257)
Q Consensus 95 ~~~~liDtpG~~-------------~~~~~~~~~~~~aD~~i-lVvd~~~---------------------------~D~ 133 (257)
..+.||||||+. .+...+..+++.++.++ +|+|++. +|+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 204 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcccc
Confidence 578999999974 34455667777888666 6899875 565
Q ss_pred CCCCHHHHHHHHHHHh-C--CCccceEEecccccccccccccccC
Q psy12244 134 KNANPEACEEQLQTLF-N--IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 134 ~~~~~~~~~~~~~~~~-~--~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+... ...+.++..+ . ....+++++||++|.|++++++.|.
T Consensus 205 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~ 248 (299)
T 2aka_B 205 MDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 248 (299)
T ss_dssp SCTTC-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHH
T ss_pred CCCCc-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHH
Confidence 43221 0122222211 1 1234689999999999999998876
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-14 Score=113.85 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=57.6
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
....+.++|+++|++|+|||||+++|++........ ....+... .+. ...+.+|||
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-------------~~~~~~~~-----~~~------~~~~~l~Dt 62 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-------------SQEPLSAA-----DYD------GSGVTLVDF 62 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-------------CSSCEEET-----TGG------GSSCEEEEC
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-------------ecCceEEE-----Eee------CceEEEEEC
Confidence 334567899999999999999999997643211000 00111111 012 257889999
Q ss_pred CCCcccHHHHHHhhhh----cceEEEEEecC
Q psy12244 103 PGHVDFSNEVTRSLAA----CQGVVLLIDAN 129 (257)
Q Consensus 103 pG~~~~~~~~~~~~~~----aD~~ilVvd~~ 129 (257)
||++++...+..+++. +|++|+|+|++
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 63 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp CCCGGGTHHHHHHHHHHGGGEEEEEEEEETT
T ss_pred CCcHHHHHHHHHHHHhccccCCEEEEEEECC
Confidence 9999998888888877 89999999998
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.4e-14 Score=117.59 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=81.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|..|+|||||++++.+.... . .....+.|+......+ . ....+.+|||||+++|.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~--~-----------~~~~~~~Tig~~~~~v--~-----~~v~LqIWDTAGQErf~ 60 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP--L-----------DTLYLESTSNPSLEHF--S-----TLIDLAVMELPGQLNYF 60 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS--G-----------GGTTCCCCCSCCCEEE--C-----SSSCEEEEECCSCSSSC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC--C-----------ccceecCeeeeeeEEE--c-----cEEEEEEEECCCchhcc
Confidence 5899999999999999987532110 0 0011234444333332 1 12689999999999996
Q ss_pred H---HHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH-----HHHHHHHHHHh-
Q psy12244 110 N---EVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP-----EACEEQLQTLF- 149 (257)
Q Consensus 110 ~---~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~-----~~~~~~~~~~~- 149 (257)
. .+..+++.++++|+|+|+++ +|+...+. +.+..+..+.+
T Consensus 61 ~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la 140 (331)
T 3r7w_B 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELL 140 (331)
T ss_dssp CCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTS
T ss_pred chhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHH
Confidence 3 45778899999999999986 67654321 12222222223
Q ss_pred CC----CccceEEecccccccccccccccC
Q psy12244 150 NI----DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~----~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.. ...+++++||++ .||.+.|..+.
T Consensus 141 ~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv 169 (331)
T 3r7w_B 141 ELGLDGVQVSFYLTSIFD-HSIYEAFSRIV 169 (331)
T ss_dssp SSSCSCCCEEEECCCSSS-SHHHHHHHHHH
T ss_pred hhcccccCceEEEeccCC-CcHHHHHHHHH
Confidence 21 246799999998 58988776664
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=108.30 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=71.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|+|||||+|+|++........ ..+.|.......+.+.+ ..++||||||+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-------------~~~~t~~~~~~~~~~~~------~~l~liDTpG~~ 95 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-------------FQAEGLRPVMVSRTMGG------FTINIIDTPGLV 95 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-------------SCC-CCCCEEEEEEETT------EEEEEEECCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-------------CCCcceeeEEEEEEECC------eeEEEEECCCCC
Confidence 56789999999999999999998744322111 22334444444555554 789999999998
Q ss_pred ccHHHH---H----Hhh--hhcceEEEEEecCccCCCCCCHHHHHHHHHHHhCCCc-cceEEeccc
Q psy12244 107 DFSNEV---T----RSL--AACQGVVLLIDANQVDLKNANPEACEEQLQTLFNIDK-KSVLRIWHR 162 (257)
Q Consensus 107 ~~~~~~---~----~~~--~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~~~-~~~i~iSa~ 162 (257)
+|.... . ..+ ..+|++++|++.+.... ........+.+.+.++... .|++.+-.|
T Consensus 96 ~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 96 EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAV-DELDKQVVIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp ETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCC-CHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCC-CHHHHHHHHHHHHHhchhhhcCEEEEEeC
Confidence 753221 1 122 27899999987764221 1112355666776655322 255555443
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-14 Score=116.93 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.0
Q ss_pred CCCCceeeEEEEecC---------CCChHHHHHHHHH
Q psy12244 23 IPIARIRNFSIIAHV---------DHGKSTLADRLLE 50 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~---------~~GKStLi~~l~~ 50 (257)
.+..+..+|+++|.+ |+|||||+++|++
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 334566899999999 9999999999975
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-13 Score=112.90 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=28.6
Q ss_pred EEEEEeCCCCCcc-------------cHHHHHHhhhhcceEEEEEecC
Q psy12244 95 YLLNLIDTPGHVD-------------FSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 95 ~~~~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
..+.||||||+.+ +...+..++..+|++++|+|+.
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~ 178 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPA 178 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEES
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEec
Confidence 5799999999864 5566777889999999999974
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=114.74 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=46.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEee--c-------c--------cCC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYT--S-------I--------LDG 92 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~-------~--------~~~ 92 (257)
+|+|+|.+|+|||||+|+|++.. ... ...++.|++.......+. . . .++
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~-------------~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~ 67 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEI-------------ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNG 67 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-Ccc-------------cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCC
Confidence 69999999999999999997643 111 112334444443332211 0 0 011
Q ss_pred -ccEEEEEeCCCCCcccH-------HHHHHhhhhcceEEEEEecCc
Q psy12244 93 -EEYLLNLIDTPGHVDFS-------NEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 -~~~~~~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvd~~~ 130 (257)
....+.||||||+.+.. ......++.+|++++|+|+..
T Consensus 68 ~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 68 LALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp EEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred cceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 13679999999986521 112245688999999999964
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-13 Score=124.13 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=29.2
Q ss_pred EEEEeCCCCCcc---cHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVD---FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~---~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.||||||+.+ ....+..++..+|++|+|+|++.
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~ 212 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ 212 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTS
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCC
Confidence 589999999766 44566678889999999999976
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-12 Score=109.59 Aligned_cols=85 Identities=20% Similarity=0.368 Sum_probs=67.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
+....|+|+|.||+|||||+|+|++....+ ...++.|+++....+.+.+ ..+.|+||||.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--------------~~~pftT~~~~~g~~~~~~------~~i~l~D~pGl 129 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEA--------------AEYEFTTLVTVPGVIRYKG------AKIQMLDLPGI 129 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCG--------------GGTCSSCCCEEEEEEEETT------EEEEEEECGGG
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcc--------------cCCCCceeeeeeEEEEeCC------cEEEEEeCCCc
Confidence 345689999999999999999997644322 2245678888888888877 89999999998
Q ss_pred cc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 106 VD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 106 ~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+ ........++.+|++++|+|+.+
T Consensus 130 ~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~ 161 (376)
T 4a9a_A 130 IDGAKDGRGRGKQVIAVARTCNLLFIILDVNK 161 (376)
T ss_dssp CCC-----CHHHHHHHHHHHCSEEEEEEETTS
T ss_pred cCCchhhhHHHHHHHHHHHhcCccccccccCc
Confidence 54 33456677899999999999986
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-12 Score=112.06 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=54.0
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCC-CHHHHHHHHHHHh--
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNA-NPEACEEQLQTLF-- 149 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~-~~~~~~~~~~~~~-- 149 (257)
+.+.||||||+.++... ....+|++++|+|+.. +|+... +.....+++++.+
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~ 225 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHI 225 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHh
Confidence 68999999998876543 3588999999999864 554332 1222333444422
Q ss_pred -CC--C--ccceEEecccccccccccccccCC
Q psy12244 150 -NI--D--KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 -~~--~--~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+. . ..+++++||++|.|++++++.|..
T Consensus 226 ~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~ 257 (341)
T 2p67_A 226 LRRKYDEWQPRVLTCSALEKRGIDEIWHAIID 257 (341)
T ss_dssp SCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred ccccccCCCCcEEEeeCCCCCCHHHHHHHHHH
Confidence 21 0 246899999999999999988874
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-12 Score=110.00 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=54.4
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCC-CHHHHHHHHHHHh-
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNA-NPEACEEQLQTLF- 149 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~-~~~~~~~~~~~~~- 149 (257)
.+.+.||||||...-. ...+..+|++++|+|+.. +|+... ......+++.+.+
T Consensus 171 ~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~ 247 (355)
T 3p32_A 171 GFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIR 247 (355)
T ss_dssp TCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHh
Confidence 3689999999976532 233588999999999875 444221 1223334444433
Q ss_pred --C----CCccceEEecccccccccccccccCC
Q psy12244 150 --N----IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 --~----~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. ....|++++||++|.|+++|++.|..
T Consensus 248 ~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~ 280 (355)
T 3p32_A 248 LIYPREALWRPPVLTMSAVEGRGLAELWDTVER 280 (355)
T ss_dssp HHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHH
T ss_pred hccccccCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 1 11357999999999999999998874
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=102.05 Aligned_cols=117 Identities=11% Similarity=0.119 Sum_probs=68.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+|+|++........ ..+.|.......+...+ ..+.||||||+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-------------~~~~t~~~~~~~~~~~~------~~l~iiDTpG~~ 98 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-------------FQSEGPRPVMVSRSRAG------FTLNIIDTPGLI 98 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-------------SSCCCSSCEEEEEEETT------EEEEEEECCCSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccC-------------CCCcceeeEEEEEeeCC------eEEEEEECCCCC
Confidence 46789999999999999999998644321111 12233332223333333 789999999997
Q ss_pred ccH---HHHH----Hh--hhhcceEEEEEecCccCCCCCCHHHHHHHHHHHhCCCc-cceEEecccc
Q psy12244 107 DFS---NEVT----RS--LAACQGVVLLIDANQVDLKNANPEACEEQLQTLFNIDK-KSVLRIWHRR 163 (257)
Q Consensus 107 ~~~---~~~~----~~--~~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~~~-~~~i~iSa~~ 163 (257)
++. .... .+ ...+|++++|+|++.-.. ........+.+.+.++... .|++.+-.|.
T Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~-~~~~~~~~~~l~~~~~~~~~~~iivV~nK~ 164 (270)
T 1h65_A 99 EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV-DNLDKLVAKAITDSFGKGIWNKAIVALTHA 164 (270)
T ss_dssp ETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC-CHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred CCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC-CHHHHHHHHHHHHHhCcccccCEEEEEECc
Confidence 753 2222 22 236899999988763111 1112344555655544321 3566555544
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-12 Score=99.48 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=76.1
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCC
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDT 102 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDt 102 (257)
++..+..+|+++|++|+|||||+++|++.... .......|.+... ..+.+.. .+.+|||
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~------------~~~~~~~G~~~~~--~~~~~~~-------~~~l~Dt 79 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSL------------ARTSKTPGRTQLI--NLFEVAD-------GKRLVDL 79 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------------------CCE--EEEEEET-------TEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcc------------ccccCCCccceee--EEEEecC-------CEEEEEC
Confidence 55566678999999999999999998542200 0001122333221 1122211 4679999
Q ss_pred CCCcc----------cHHHHHHhh---hhcceEEEEEecCc--------------------------cCCCCCC-HHHHH
Q psy12244 103 PGHVD----------FSNEVTRSL---AACQGVVLLIDANQ--------------------------VDLKNAN-PEACE 142 (257)
Q Consensus 103 pG~~~----------~~~~~~~~~---~~aD~~ilVvd~~~--------------------------~D~~~~~-~~~~~ 142 (257)
||+.. +.......+ ..+|++++|+|+.. +|+.... .+...
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~ 159 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQL 159 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHH
Confidence 99853 222222333 46899999999875 3432211 11113
Q ss_pred HHHHHHhC-CC-ccceEEecccccccccccccccCC
Q psy12244 143 EQLQTLFN-ID-KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 143 ~~~~~~~~-~~-~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.++..+. .. ..+++|+||+++.|++++++.|..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 160 NMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp HHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 33443332 11 246789999999999999988864
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.8e-12 Score=109.45 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=59.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|+...... .. ..........+++++. ...+.+.. .+....+++|||||+.+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~-~~----~~~~~~~~~~~ti~~~--~~~~~~~~--~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYP-ER----VIPGAAEKIERTVQIE--ASTVEIEE--RGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC--------------------CEEEE--EEEEC------CEEEEEEEEC------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCC-CC----cccCCCcccCCceeEE--EEEEEeec--CCcccceEEEEeccccc
Confidence 4689999999999999999985432111 00 0000001111222222 22222221 23346899999999943
Q ss_pred -------cHHHHH-------Hhhhhc-------------ceEEEEEecCc--------------------------cCCC
Q psy12244 108 -------FSNEVT-------RSLAAC-------------QGVVLLIDANQ--------------------------VDLK 134 (257)
Q Consensus 108 -------~~~~~~-------~~~~~a-------------D~~ilVvd~~~--------------------------~D~~ 134 (257)
|...+. .+++.+ |+++++++... +|+.
T Consensus 108 ~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 108 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 187 (361)
T ss_dssp --------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSS
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCC
Confidence 322222 333332 45778887622 5654
Q ss_pred CCC-HHHHHHHHHHHhCCCccceEEeccccccccccccccc
Q psy12244 135 NAN-PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 135 ~~~-~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i 174 (257)
... .....+++.+.+....++++++||++|.| ++.+..+
T Consensus 188 ~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l 227 (361)
T 2qag_A 188 TLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQ 227 (361)
T ss_dssp CHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHH
Confidence 321 12222455555544456899999999998 6555443
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-12 Score=112.11 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=22.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++|+++|.+|+|||||+|+|++..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999997644
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=108.78 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=81.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
..|+|+|++|+|||||+++|+.....+.. ....|.......+.+.. ...++++||||+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~--------------~~ftTl~p~~G~V~~~~-----~~~~~l~DtpGli~~ 218 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAP--------------YPFTTLSPNLGVVEVSE-----EERFTLADIPGIIEG 218 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECC--------------CTTCSSCCEEEEEECSS-----SCEEEEEECCCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccC--------------cccceecceeeEEEecC-----cceEEEEeccccccc
Confidence 45899999999999999999653221111 11123333333344321 25788999999853
Q ss_pred ------cHHHHHHhhhhcceEEEEEecC-c------------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 108 ------FSNEVTRSLAACQGVVLLIDAN-Q------------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 108 ------~~~~~~~~~~~aD~~ilVvd~~-~------------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
+.......+..+|.+++|+|+. . +|+... ...+.+.+.+.
T Consensus 219 a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~ 295 (416)
T 1udx_A 219 ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALA 295 (416)
T ss_dssp GGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHH
Confidence 2233344566799999999995 3 665432 33444444442
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....+++++||++++|+++|++.|..
T Consensus 296 ~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 296 REGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp TTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred hcCCeEEEEECCCccCHHHHHHHHHH
Confidence 22356999999999999999888763
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=106.84 Aligned_cols=79 Identities=20% Similarity=0.176 Sum_probs=52.2
Q ss_pred EEEEEeCCCCCccc-------------HHHHHHhhhhcceEEEEEecCc----------------------------cCC
Q psy12244 95 YLLNLIDTPGHVDF-------------SNEVTRSLAACQGVVLLIDANQ----------------------------VDL 133 (257)
Q Consensus 95 ~~~~liDtpG~~~~-------------~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~ 133 (257)
..++||||||+.++ ...+..++..+|++|+|+|+.. +|+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl 215 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDL 215 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCcc
Confidence 46899999999876 5667778899999999998743 555
Q ss_pred CCCCHHHHHHHHHHHhCCCccceEEeccccccccccccccc
Q psy12244 134 KNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSL 174 (257)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i 174 (257)
.+... ...+.+.........+++++|++++.++++.+..+
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 216 MDKGT-DAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp CCTTC-CSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred CCCcc-cHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 33211 11122222111123468999999999988776543
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-12 Score=101.31 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=79.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccc-----cCCCcccccchHHHhhhCceE-eceeeE-EEeec------ccCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVL-----SSGSSQVLDSLQVEQERGITV-KAQTAS-LRYTS------ILDG 92 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~-----~~~~~~~~d~~~~e~~~g~t~-~~~~~~-~~~~~------~~~~ 92 (257)
.+.++|+++|++|+|||||+++|+....... ..+.....|....+ ..+.+. ...... ..+.. +...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 4567899999999999999999987632210 00111111111111 112221 100000 00000 0001
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCC---CCHHHHHHHHHH
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKN---ANPEACEEQLQT 147 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~---~~~~~~~~~~~~ 147 (257)
....+.+|||+|+..... .....++.+++|+|+.. +|+.. .+.++..+.++.
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 183 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKL 183 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHH
Confidence 235788999999521110 00124678899999765 56532 234444555544
Q ss_pred HhCCCccceEEecccccccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. + ...+++++||++|.|+++++++|..
T Consensus 184 ~-~-~~~~i~~~Sa~~g~gi~~l~~~l~~ 210 (221)
T 2wsm_A 184 I-N-PRAKIIEMDLKTGKGFEEWIDFLRG 210 (221)
T ss_dssp H-C-TTSEEEECBTTTTBTHHHHHHHHHH
T ss_pred h-C-CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 3 2 2457999999999999999988863
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=9e-12 Score=97.73 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=52.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+.++|+++|++|+|||||+++|++...... ......+.+.+ +.. ..+.+|||||+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-----------~~~~~~~~~~~-------~~~------~~~~l~Dt~G~ 101 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----------VVSQEPLSAAD-------YDG------SGVTLVDFPGH 101 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------C-------CCC------TTCSEEEETTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-----------cccCCCceeee-------ecC------CeEEEEECCCC
Confidence 4567899999999999999999976432110 00011111111 122 56889999999
Q ss_pred cccHHHHHHhhhh----cceEEEEEecC
Q psy12244 106 VDFSNEVTRSLAA----CQGVVLLIDAN 129 (257)
Q Consensus 106 ~~~~~~~~~~~~~----aD~~ilVvd~~ 129 (257)
..+...+..++.. +|++|+|+|++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 102 VKLRYKLSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp CBSSCCHHHHHHHHGGGEEEEEEEEETT
T ss_pred chHHHHHHHHHHhhcccCCEEEEEEECC
Confidence 9876665655554 89999999987
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.8e-11 Score=112.00 Aligned_cols=144 Identities=16% Similarity=0.230 Sum_probs=81.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCC-------------------------Ccccccc--hHHH------h--
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-------------------------SSQVLDS--LQVE------Q-- 71 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~-------------------------~~~~~d~--~~~e------~-- 71 (257)
..+.|+++|.+++|||||+|+|++......... ...+.+. ...+ .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 467899999999999999999987543221110 0000000 0000 0
Q ss_pred --hhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-------------cHHHHHHhh-hhcceEEEEEecCc-----
Q psy12244 72 --ERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-------------FSNEVTRSL-AACQGVVLLIDANQ----- 130 (257)
Q Consensus 72 --~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-------------~~~~~~~~~-~~aD~~ilVvd~~~----- 130 (257)
..+++.+.....+.... ...++|+||||... +...+..++ ..+|++++|+|++.
T Consensus 130 g~~~~is~~~i~l~I~~P~-----~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~ 204 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-----VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS 204 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-----CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSC
T ss_pred CCCCcccccceEEEEecCC-----CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchh
Confidence 11222222222222221 24689999999754 222333344 46899999999985
Q ss_pred ----------------------cCCCCCCHHHHHHHHH-HHh--CCCccceEEecccccccccccccccCC
Q psy12244 131 ----------------------VDLKNANPEACEEQLQ-TLF--NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 131 ----------------------~D~~~~~~~~~~~~~~-~~~--~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+|+...... ....+. +.+ .....+++++||++|.|+++|++.+..
T Consensus 205 d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~-~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 205 DALKIAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHHHHCTTCSSEEEEEECTTSSCTTCC-SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcccCCcchh-hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 565432210 011111 111 123356899999999999999888764
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=5e-11 Score=102.64 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=48.5
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------c-----CC------CCCCHH---H---HHHHHHHHhCC
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------V-----DL------KNANPE---A---CEEQLQTLFNI 151 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------~-----D~------~~~~~~---~---~~~~~~~~~~~ 151 (257)
+.+.|+||||...-. ......+|++++|+|+.. + +. .+.|.. . ....+...+..
T Consensus 167 ~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~ 243 (349)
T 2www_A 167 YDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKL 243 (349)
T ss_dssp CSEEEEECCCC--CH---HHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHh
Confidence 678999999975322 223568999999999864 0 10 112211 1 22233322211
Q ss_pred -------CccceEEecccccccccccccccCC
Q psy12244 152 -------DKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 152 -------~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+++++||++|.|+++|+++|..
T Consensus 244 ~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~ 275 (349)
T 2www_A 244 LRKRSQVWKPKVIRISARSGEGISEMWDKMKD 275 (349)
T ss_dssp CC-----CCCEEEECCTTTCTTHHHHHHHHHH
T ss_pred cCccccCCCceEEEEecCCCCCHHHHHHHHHH
Confidence 1246899999999999999998874
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.1e-11 Score=102.00 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=57.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc--------cCC---ccEEE
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------LDG---EEYLL 97 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------~~~---~~~~~ 97 (257)
.+|+|+|.+|+|||||+|+|++.... ....++.|+++....+.+.+. +.. ....+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~--------------v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i 68 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE--------------AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTM 68 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc--------------ccCCCCceECceEEEEecCCcccceeeeeecccceeeeEE
Confidence 47999999999999999999874311 111223344444444443220 000 01479
Q ss_pred EEeCCCCCcccHH-------HHHHhhhhcceEEEEEecCc
Q psy12244 98 NLIDTPGHVDFSN-------EVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 98 ~liDtpG~~~~~~-------~~~~~~~~aD~~ilVvd~~~ 130 (257)
.||||||+.++.. .....++.+|++++|+|+.+
T Consensus 69 ~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 69 EFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 9999999987642 23456789999999999986
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=100.94 Aligned_cols=90 Identities=20% Similarity=0.239 Sum_probs=52.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeeccc--------C---CccE
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSIL--------D---GEEY 95 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~--------~---~~~~ 95 (257)
...+|+|+|.+|+|||||+|+|++... .....++.|+++....+.+.+.. . ....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~--------------~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~ 86 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA--------------SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPA 86 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc--------------cccCCCccccCceeEEEEECCccceeeccccCccccccc
Confidence 346799999999999999999975321 11223445666555555443200 0 0024
Q ss_pred EEEEeCCCCCcccHH-------HHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVDFSN-------EVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~~~~-------~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.||||||+..+.. .+...++.+|++++|+|+.+
T Consensus 87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 699999999987544 45678899999999999986
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=103.77 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=30.4
Q ss_pred EEEEeCCCCCcc-----------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVD-----------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~-----------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.||||||+.+ |...+..++..+|++|+|+|++.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~ 200 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK 200 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc
Confidence 588999999976 66777788899999999999975
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-10 Score=97.34 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-..+|+++|+.|+|||||+++|+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5.2e-10 Score=96.66 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=56.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc----------cCC-----c
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI----------LDG-----E 93 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----------~~~-----~ 93 (257)
++|+|+|.+|+|||||+|+|++....+... +..|+..+.....+... +.. .
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~--------------p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~ 67 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANY--------------PFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVV 67 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSC--------------CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCC--------------CCceeccceeeEecChHHHHHHHHHhcccccccccC
Confidence 569999999999999999998753211110 11122222222222100 000 1
Q ss_pred cEEEEEeCCCCCccc-------HHHHHHhhhhcceEEEEEecCc
Q psy12244 94 EYLLNLIDTPGHVDF-------SNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 94 ~~~~~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
...+.||||||+..+ .......++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 257999999998764 3455667899999999999986
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=8.1e-10 Score=94.58 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=50.1
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
+.+.|+||||..+-.. .....+|++++|+|+.. +|+.... .....+.+...+.
T Consensus 148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~ 224 (337)
T 2qm8_A 148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALH 224 (337)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHH
Confidence 6899999999865322 22467899999998642 3432110 0111233333221
Q ss_pred C-C------ccceEEecccccccccccccccCC
Q psy12244 151 I-D------KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~-~------~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
. . ..+++++||++|.|+++|++.|..
T Consensus 225 l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 225 ILTPPSATWTPPVVTISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp TBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred hccccccCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 1 1 246899999999999999988874
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-09 Score=93.26 Aligned_cols=36 Identities=6% Similarity=0.211 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.+|||+|++.|...+..+++.++++|+|+|.++
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~ 228 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGG
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcc
Confidence 789999999999999999999999999999999875
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=8.7e-09 Score=84.65 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=22.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...++++|..|+|||||++.|...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35677899999999999999999743
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.84 E-value=8.8e-09 Score=89.54 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=60.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc--------cCCc---cE
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------LDGE---EY 95 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------~~~~---~~ 95 (257)
+..+|+|+|++|+|||||+|+|++....... ..++.|+++....+.+.+. .... ..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-------------~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~ 85 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-------------NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPA 85 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-------------CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccc-------------CCCceeecceeeeeeeCCcchhhhhhhcccccccCc
Confidence 3467999999999999999999874321111 1233455555555544320 0000 13
Q ss_pred EEEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.+||+||... +.......++.+|++++|+|+..
T Consensus 86 ~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 86 FLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 688999999643 44456777889999999999976
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.4e-10 Score=103.39 Aligned_cols=62 Identities=42% Similarity=0.585 Sum_probs=37.1
Q ss_pred cchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 196 IPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 196 ~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
.|+.++||++++||+++||+|+.|++++.+|.+.+.|. .+++|++++|++|||||+++.++|
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~ 73 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTT 73 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEE
Confidence 35678999999999999999999999999998776554 679999999999999999998764
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.8e-09 Score=89.67 Aligned_cols=35 Identities=9% Similarity=0.282 Sum_probs=33.2
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecC
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
..+.+|||+|++.|...+..+++.++++|+|+|.+
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGG
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECc
Confidence 78999999999999999999999999999999776
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=89.44 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+|+|+|++|+|||||+++|++.
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCC
Confidence 467899999999999999999753
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.74 E-value=4.3e-09 Score=94.34 Aligned_cols=150 Identities=12% Similarity=0.145 Sum_probs=76.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCc------cccCCC--cccccchHH-HhhhCceEeceeeEEE-----eecc--
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGT------VLSSGS--SQVLDSLQV-EQERGITVKAQTASLR-----YTSI-- 89 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~------~~~~~~--~~~~d~~~~-e~~~g~t~~~~~~~~~-----~~~~-- 89 (257)
.++++|+++|++|+|||||+++|...... +...+. ....+.+.. ....++.+-....... ...+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999843211 111110 000111111 1122232111000000 0000
Q ss_pred cCCccEEEEEeCCCCCcc----cHHHHHHh--hhhcceEEEEEecCc------------------------cCCCCCCHH
Q psy12244 90 LDGEEYLLNLIDTPGHVD----FSNEVTRS--LAACQGVVLLIDANQ------------------------VDLKNANPE 139 (257)
Q Consensus 90 ~~~~~~~~~liDtpG~~~----~~~~~~~~--~~~aD~~ilVvd~~~------------------------~D~~~~~~~ 139 (257)
.....+.+.||||||... +....... +..+|.+++|+|+.. +|... ...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVlNK~D~~~-~~g 257 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHA-KGG 257 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEEECTTSCC-CCT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhcCceEEEEeCCcccc-chH
Confidence 000236899999999864 22222222 236899999999976 34321 112
Q ss_pred HHHHHHHHHhCCC---------------ccceEEeccccccc-ccccccccCCC
Q psy12244 140 ACEEQLQTLFNID---------------KKSVLRIWHRRCFS-CADCHRSLDST 177 (257)
Q Consensus 140 ~~~~~~~~~~~~~---------------~~~~i~iSa~~g~g-i~~l~~~i~~~ 177 (257)
.... +...++.+ ..|.+++|+..|.| +++|++.+...
T Consensus 258 ~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 258 GALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 2222 22222221 12346789999999 99999888754
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-08 Score=81.67 Aligned_cols=27 Identities=19% Similarity=0.462 Sum_probs=23.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.+.++|+++|.+|+|||||+++|+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356889999999999999999998753
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=9.9e-10 Score=99.81 Aligned_cols=60 Identities=40% Similarity=0.642 Sum_probs=38.4
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeeeC
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+.||++++||+++||+|+.+++++.+|.+.+.|. .+++|++++|++|||||+++.++|
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~ 95 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF 95 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE
Confidence 456899999999999999999999999998876443 478999999999999999998864
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.4e-09 Score=90.56 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=71.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+++|.+|+|||||+|+|++....... .......+|.|.+... +.+. ..+.++||||..+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~--------~~~~~~~~gtT~~~~~--~~~~-------~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGN--------VITTSYFPGTTLDMIE--IPLE-------SGATLYDTPGIINH 225 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTC--------CCEEEECTTSSCEEEE--EECS-------TTCEEEECCSCCCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcc--------ceeecCCCCeEEeeEE--EEeC-------CCeEEEeCCCcCcH
Confidence 57999999999999999999875210000 0001123344444222 2222 13789999997542
Q ss_pred H-------HHHHHhh---hhcceEEEEEecCc--------------------------cCCCCC-CHHHHHHHHHHHhCC
Q psy12244 109 S-------NEVTRSL---AACQGVVLLIDANQ--------------------------VDLKNA-NPEACEEQLQTLFNI 151 (257)
Q Consensus 109 ~-------~~~~~~~---~~aD~~ilVvd~~~--------------------------~D~~~~-~~~~~~~~~~~~~~~ 151 (257)
. ......+ ...|.+++++++.. +|.... ..+...+.+++.++.
T Consensus 226 ~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 226 HQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp SSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred HHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 1 1122222 56789999999943 333211 245556666666653
Q ss_pred CccceEEeccccccccccccc
Q psy12244 152 DKKSVLRIWHRRCFSCADCHR 172 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~ 172 (257)
.+.|.++...+++.++..
T Consensus 306 ---~l~p~~~~~~~~~~~l~~ 323 (369)
T 3ec1_A 306 ---LLSPPSKRYAAEFPPLVP 323 (369)
T ss_dssp ---TBCSSCGGGTTTCCCEEE
T ss_pred ---ccCCCCchhhhhccCcEE
Confidence 366777776666665543
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.8e-08 Score=83.90 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecC
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
..+.+|||+|++.|...+..+++.++++|+|+|.+
T Consensus 161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGG
T ss_pred eeeccccCCCcccccccHHHHhccCCEEEEEEECC
Confidence 78999999999999999999999999999999998
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.63 E-value=5.7e-09 Score=87.94 Aligned_cols=101 Identities=11% Similarity=0.097 Sum_probs=74.5
Q ss_pred EEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCCHHHHHHHHHH
Q psy12244 96 LLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNANPEACEEQLQT 147 (257)
Q Consensus 96 ~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~~~~~~~~~~ 147 (257)
.+.+||| +++|...+..+++.+|++|+|+|+++ +|+.+....+..+++.+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~ 141 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEE 141 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHH
Confidence 6789999 88888878889999999999999986 55533111011223333
Q ss_pred HhCCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHh
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
.++.. .+++++||++|.|++++++.+.. ..++++|..++||+|+...+...
T Consensus 142 ~~~~~-~~~~~~SAktg~gv~~lf~~l~g-------------------------eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 142 IYSGL-YPIVKTSAKTGMGIEELKEYLKG-------------------------KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHTTT-SCEEECCTTTCTTHHHHHHHHSS-------------------------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHhhh-CcEEEEECCCCcCHHHHHHHhcC-------------------------CeEEEECCCCCcHHHHHHHhccc
Confidence 34322 57999999999999999876551 23678999999999999998653
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-08 Score=87.24 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=72.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+|+|++........ .......+|.|..... +.+.. .+.++||||..+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~-------~~~~~~~~gtT~~~~~--~~~~~-------~~~liDtPG~~~~ 224 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETEN-------VITTSHFPGTTLDLID--IPLDE-------ESSLYDTPGIINH 224 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSS-------CCEEECCC----CEEE--EESSS-------SCEEEECCCBCCT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccccc-------ceecCCCCCeecceEE--EEecC-------CeEEEeCCCcCcH
Confidence 579999999999999999998763211000 0001122344443221 22221 2789999998542
Q ss_pred -------HHHHHHh---hhhcceEEEEEecCc--------------------------cCCCCC-CHHHHHHHHHHHhCC
Q psy12244 109 -------SNEVTRS---LAACQGVVLLIDANQ--------------------------VDLKNA-NPEACEEQLQTLFNI 151 (257)
Q Consensus 109 -------~~~~~~~---~~~aD~~ilVvd~~~--------------------------~D~~~~-~~~~~~~~~~~~~~~ 151 (257)
....... ....+.+++++++.. +|.... ..+...+.+++.++.
T Consensus 225 ~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~ 304 (368)
T 3h2y_A 225 HQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD 304 (368)
T ss_dssp TSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT
T ss_pred HHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCC
Confidence 1222222 255788899998843 444221 245666667777664
Q ss_pred CccceEEecccccccccccccc
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRS 173 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~ 173 (257)
.+.|.++.+++++.++...
T Consensus 305 ---~l~p~~~~~~~~~~~l~~~ 323 (368)
T 3h2y_A 305 ---LLSPPTPEELENMPELVKY 323 (368)
T ss_dssp ---TBCSSCHHHHHTSCCEEEE
T ss_pred ---ccCCCchhhHhhccCcEEE
Confidence 3677788777777766543
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.51 E-value=6.8e-08 Score=80.52 Aligned_cols=59 Identities=34% Similarity=0.354 Sum_probs=34.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+|+|++..... ....+|.|..... +.. + ..+.++||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~-------------~~~~~g~T~~~~~--~~~-~------~~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAK-------------TGDRPGITTSQQW--VKV-G------KELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------------------CC--EEE-T------TTEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceee-------------cCCCCCeeeeeEE--EEe-C------CCEEEEECcCcC
Confidence 45689999999999999999997643222 1223455554432 222 1 257899999985
Q ss_pred c
Q psy12244 107 D 107 (257)
Q Consensus 107 ~ 107 (257)
.
T Consensus 177 ~ 177 (282)
T 1puj_A 177 W 177 (282)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-07 Score=85.14 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.+...|+|+|.+|+|||||+|+|++..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 466789999999999999999997643
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-07 Score=77.29 Aligned_cols=117 Identities=23% Similarity=0.141 Sum_probs=71.8
Q ss_pred EeCCCCCc-ccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 99 LIDTPGHV-DFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 99 liDtpG~~-~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
+=+.|||. ...+++...+..+|+++.|+|+.. +|+.+ .+..+...+++....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~---~~~~~~~~~~~~~~g 79 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKAD---AAVTQQWKEHFENQG 79 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSC---HHHHHHHHHHHHTTT
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCC---HHHHHHHHHHHHhcC
Confidence 34579997 467788889999999999999987 56543 122233333332223
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+++++||++|.|+++|++.+....-........+.. ..+..+++++|..+.||+++.+.+....
T Consensus 80 ~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~-------~~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 80 IRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGV-------KPRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTC-------CCCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCC-------CCCCceEEEEecCCCchHHHHHHHhcCc
Confidence 4689999999999999888765321000000000000 0112468899999999999999997644
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.4e-07 Score=79.21 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=73.4
Q ss_pred EEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCC--HHHHHHHHHH---
Q psy12244 97 LNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNAN--PEACEEQLQT--- 147 (257)
Q Consensus 97 ~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~--~~~~~~~~~~--- 147 (257)
+.-++++ +++|..........++++++|+|+.+ +|+.+.. .+...+.+..
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 3344544 77888877777789999999999998 7775432 2333333333
Q ss_pred HhCCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHh
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
..+....+++++||++|.|+++|++.+.... ..+.+.++|..+.||+++.+.++..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~---------------------~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR---------------------EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH---------------------TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc---------------------ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 2354334689999999999999998886321 1146889999999999999999876
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.30 E-value=7e-07 Score=77.19 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=73.7
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCC--HHHHHHHH---HHHhCCCcc
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNAN--PEACEEQL---QTLFNIDKK 154 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~--~~~~~~~~---~~~~~~~~~ 154 (257)
..++|........+.+|++++|+|+.+ +|+.+.. .++..+.+ .+..+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPE 134 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCS
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcc
Confidence 346788877777888889999999998 7774432 22333332 233455444
Q ss_pred ceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++++||++|.|+++|++.|.... ....+.++|..+.||+++.+.++...
T Consensus 135 ~v~~iSA~~g~gi~~L~~~l~~~~---------------------~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 135 DVFLISAAKGQGIAELADAIEYYR---------------------GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH---------------------TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred cEEEEeCCCCcCHHHHHhhhhhhc---------------------ccceEEEecCCCCChhHHHHHHHhhh
Confidence 689999999999999998886321 11458899999999999999998864
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.4e-07 Score=76.34 Aligned_cols=57 Identities=26% Similarity=0.350 Sum_probs=34.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.+++++|.+|+|||||+|+|++..... .....|.|.... .+... ..+.+|||||+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-------------~~~~~g~T~~~~--~~~~~-------~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-------------VGAQPGITKGIQ--WFSLE-------NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------------------CCSC--EEECT-------TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-------------cCCCCCCccceE--EEEeC-------CCEEEEECCCccc
Confidence 579999999999999999997643221 111234444322 11111 3578999999875
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.1e-06 Score=74.44 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
++..|+++|.+|+||||++..|..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 467899999999999999999875
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.5e-07 Score=76.75 Aligned_cols=36 Identities=8% Similarity=0.269 Sum_probs=27.3
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.+|||+|++.|...+..+++.++++|+|+|.++
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTC
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECcc
Confidence 789999999999999999999999999999999874
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.8e-07 Score=76.16 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=60.4
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCCHHHHHHHHHHHhCCCccce
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNANPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (257)
++++.......++.+|++++|+|+++ +|+.+.......++..+.+.....++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~ 145 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDV 145 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeE
Confidence 33333333346677777777777764 66643210011223333221112469
Q ss_pred EEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 157 LRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
+++||++|.|+++|++.+.. ..++++|..++||+|+...+. ..
T Consensus 146 ~~~SA~~g~gi~~L~~~l~G-------------------------~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 146 LKVSAKTGEGIDELVDYLEG-------------------------FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EECCTTTCTTHHHHHHHTTT-------------------------CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEECCCCCCHHHHHhhccC-------------------------cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 99999999999999876541 236789999999999999998 53
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=4e-05 Score=67.00 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..++|+|++|+|||||+|.|++
T Consensus 70 ~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 3799999999999999999976
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=70.50 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
++..|+++|++|+||||++..|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.2e-05 Score=67.69 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...++++|+|++|+|||||+|.|++.
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34567999999999999999999764
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=8.2e-06 Score=67.13 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=64.2
Q ss_pred CCCcc-cHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCCHHHHHHHHHHHhCCCccceEEe
Q psy12244 103 PGHVD-FSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 103 pG~~~-~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 159 (257)
|||.. ..+.+...+..+|+++.|+|+.. +|+.+ ....+...+.+.....++ ++
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~iivlNK~DL~~---~~~~~~~~~~~~~~g~~v-~i 80 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIAD---EKTTKKWVEFFKKQGKRV-IT 80 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEEEEECGGGSC---HHHHHHHHHHHHHTTCCE-EE
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEEEEECccCCC---HHHHHHHHHHHHHcCCeE-EE
Confidence 88865 44677888999999999999986 23221 112222222231112457 99
Q ss_pred cccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhh
Q psy12244 160 WHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
||++|.|+++|++.+.... ..+.++|..+.||+++.+++....
T Consensus 81 Sa~~~~gi~~L~~~l~~~~-----------------------~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 81 THKGEPRKVLLKKLSFDRL-----------------------ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CCTTSCHHHHHHHHCCCTT-----------------------CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred ECCCCcCHHHHHHHHHHhh-----------------------hheEEeCCCCCCHHHHHHHHhccc
Confidence 9999999999988776221 358899999999999999987543
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=6e-05 Score=66.47 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.8
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+...|+|+|++++|||||+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 346778999999999999999999875
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.74 E-value=2.3e-06 Score=73.48 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=32.9
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecC
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~ 129 (257)
....+.+|||+|+++|...+..+++.++++|+|+|.+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGG
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECc
Confidence 4578999999999999999999999999999999987
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=97.71 E-value=3.8e-05 Score=67.65 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++..|+++|++|+||||+++.|...
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999763
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=3.4e-05 Score=63.67 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.+++++|+.|+|||||+|.|++..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998754
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=2e-05 Score=72.08 Aligned_cols=58 Identities=64% Similarity=0.905 Sum_probs=29.2
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCC-CccccCChhhHhhhCceEeeeee
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-SSQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g-~~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+.++++++||+++||+|+.+++++..|.+...+ ..+++|..+.|++||+||+++.+
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~ 61 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAV 61 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEE
Confidence 45578999999999999999999999888765432 36789999999999999986654
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.55 E-value=4.6e-05 Score=67.11 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=22.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+++.|+++|..|+||||++..|...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999998743
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=97.43 E-value=4.2e-05 Score=70.03 Aligned_cols=56 Identities=59% Similarity=0.943 Sum_probs=23.6
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCcccCC-CccccCChhhHhhhCceEeeeee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-SSQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g-~~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
+.++++++||+++||+|+.+++++..|.+.... ..+++|..+.|++||+||++...
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~ 59 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSV 59 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEE
Confidence 468999999999999999999999888765432 36789999999999999987654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00018 Score=60.19 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...|+++|+.|+||||++..|...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999998653
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00021 Score=63.06 Aligned_cols=57 Identities=37% Similarity=0.450 Sum_probs=47.1
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCcccCC-----------------CccccCChhhHhhhCceEeeeeee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG-----------------SSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g-----------------~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
...+++++|++++||+|+.+++++..|.+.... -.+++|..++|+++|+||..+..+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~ 89 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAY 89 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEE
Confidence 357899999999999999999999888764321 146899999999999999877654
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00015 Score=67.75 Aligned_cols=58 Identities=41% Similarity=0.631 Sum_probs=48.9
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.++++++||+++||+|+.+++++..|.+...|. .+++|+.+.|++||+||.++..+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~ 69 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATT 69 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEE
Confidence 34688999999999999999999998887665442 57899999999999999887653
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00041 Score=60.31 Aligned_cols=69 Identities=9% Similarity=0.272 Sum_probs=51.7
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCccCCC------CCCHHHHHHHHHHHhC---CCccceEEecccc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLK------NANPEACEEQLQTLFN---IDKKSVLRIWHRR 163 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~~D~~------~~~~~~~~~~~~~~~~---~~~~~~i~iSa~~ 163 (257)
..+.+|||+|++.|...+..+++.++++|||+|.++-|.. ...+++....+..... ....|++.+-.|.
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence 7899999999999999999999999999999999984431 1225555555555443 3456677666654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0002 Score=60.15 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=44.6
Q ss_pred cCCCCCCHH-HHHHHHHHHhCCCccceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEee
Q psy12244 131 VDLKNANPE-ACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAH 209 (257)
Q Consensus 131 ~D~~~~~~~-~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 209 (257)
+|+.+.... +..+.+.+.+.....+++.+||++|.|+++|++.+. ...++++|.
T Consensus 127 ~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~-------------------------G~~~~lvG~ 181 (307)
T 1t9h_A 127 MDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQ-------------------------DKTTVFAGQ 181 (307)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGT-------------------------TSEEEEEES
T ss_pred CccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcC-------------------------CCEEEEECC
Confidence 777543210 123333333311123689999999999998765432 135789999
Q ss_pred ecccchhhHHHHHH
Q psy12244 210 VDHGKSTLADRLLE 223 (257)
Q Consensus 210 v~~Gk~~~~~~i~~ 223 (257)
.++||+|+.+.+..
T Consensus 182 sG~GKSTLln~L~g 195 (307)
T 1t9h_A 182 SGVGKSSLLNAISP 195 (307)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHhcc
Confidence 99999999999854
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00016 Score=68.95 Aligned_cols=57 Identities=46% Similarity=0.725 Sum_probs=35.7
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--ccccCChhhHhhhCceEeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
.+.++++++||+++||+|+.++++...|.+.+.+. .+++|+.++|++||+||.++..
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~ 75 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 75 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeecee
Confidence 34688999999999999999999999887765443 4688999999999999987654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0003 Score=55.10 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCCCceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 22 DIPIARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 22 ~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
++|..+.+.|+|+|++|+|||||+++|+...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4555566679999999999999999998754
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00041 Score=58.61 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+++|..|+||||++..|...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988653
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00083 Score=59.77 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=22.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...++|+|..|+|||||++.|.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 34567999999999999999998764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00018 Score=60.38 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..++++|++|+|||||+|.|+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4689999999999999999954
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00029 Score=55.55 Aligned_cols=35 Identities=6% Similarity=0.130 Sum_probs=20.1
Q ss_pred EEEEeCCC------CCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 96 LLNLIDTP------GHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 96 ~~~liDtp------G~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
++..-.+| |+..++..|..++..+|++|||||+++
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD 137 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEA 137 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBT
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 34455555 788899999999999999999999986
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00028 Score=63.75 Aligned_cols=58 Identities=29% Similarity=0.584 Sum_probs=29.7
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.++++++||+++||+|+.++++...|.+...|. .++.|+.++|++||+|+.++...
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~ 76 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQ 76 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEE
Confidence 45688999999999999999999987776643332 56889999999999999876543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00056 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++|+|++|+|||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00066 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+++|+|+.|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00066 Score=52.15 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++|+|++|+|||||++.|....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998743
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0008 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...|+++|++|+|||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999664
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00017 Score=65.11 Aligned_cols=59 Identities=36% Similarity=0.600 Sum_probs=48.8
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC--------ccccCChhhHhhhCceEeeeeee
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS--------SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~--------~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+.++++++|+.++||+|+.+++++..|.+...|. .++.|+.+.|+++|+|+..+...
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~ 76 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQ 76 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEE
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEE
Confidence 445689999999999999999999988887754332 45789999999999999876653
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.001 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+|+|+.|+|||||++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34457999999999999999999764
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00069 Score=63.18 Aligned_cols=58 Identities=40% Similarity=0.677 Sum_probs=29.4
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.++++++||+++||+|+.++++...|.+.+.|. .+++|+.+.|+++|+||.++..+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~ 71 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEE
Confidence 45688999999999999999999998887654432 57899999999999999887653
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00076 Score=62.93 Aligned_cols=58 Identities=36% Similarity=0.657 Sum_probs=31.3
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCC----CccccCChhhHhhhCceEeeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSG----SSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g----~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
.+.++++++|+.++||+|+.++++...|.+...+ ..++.|+.+.|+++|+|+.+....
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~ 69 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATT 69 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEE
Confidence 4568899999999999999999999888765433 257899999999999999887543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0016 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+|+|++|+|||||++.|...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999998653
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.001 Score=55.01 Aligned_cols=31 Identities=6% Similarity=0.183 Sum_probs=25.6
Q ss_pred CCCCcccHHHHHHhhhhcceEEEEEecCccC
Q psy12244 102 TPGHVDFSNEVTRSLAACQGVVLLIDANQVD 132 (257)
Q Consensus 102 tpG~~~~~~~~~~~~~~aD~~ilVvd~~~~D 132 (257)
..|+..+...+..++..+|++|+|||+++-+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDre 224 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHK 224 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHh
Confidence 3578889999999999999999999998733
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0016 Score=50.86 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
+...|+|+|++|+|||||++.|....+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4457999999999999999999775543
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++|+|+.|+|||||++.|.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999997754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++|+|++|+|||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999998753
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0032 Score=55.13 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+++|..|+||||++..|...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998653
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=21.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
-..++|+|++|+|||||++.|.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3458999999999999999998754
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00043 Score=61.63 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.....|+++|.+|+||||+..+|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999754
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++|+|+.|+|||||++.|++..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 358999999999999999998754
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0019 Score=50.85 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=21.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
...|+|+|++|+|||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0018 Score=48.83 Aligned_cols=25 Identities=20% Similarity=-0.049 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..|+|+|.+|+||||+.+.|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999976544
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0026 Score=48.31 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=22.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
...|+++|++|+|||||.+.|....+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 45799999999999999999976544
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0009 Score=59.49 Aligned_cols=56 Identities=45% Similarity=0.545 Sum_probs=26.8
Q ss_pred hhcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeee
Q psy12244 200 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 200 ~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
...+++++||+++||+|+.+++++..|.+.. .|. .+++|..++|+++|+||..+..
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~ 114 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRA 114 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CC
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeE
Confidence 3468999999999999999999988776531 121 4578999999999999987643
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0021 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
++.++++|++|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999975
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.00081 Score=61.58 Aligned_cols=56 Identities=30% Similarity=0.544 Sum_probs=25.0
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC------------CC-----ccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GS-----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g~-----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++||+++||+|+.+++++..+.+... |. .+++|..++|+++|+|+......
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~ 249 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTT 249 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEE
Confidence 4679999999999999999999887765422 11 56899999999999999877543
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0024 Score=48.73 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=22.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+++|.+|+||||+...|....+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999976544
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHHhc
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~ 52 (257)
|+|+|++|+||+||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0021 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.+.|+++|++|||||||.++|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999998754
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0019 Score=55.23 Aligned_cols=45 Identities=22% Similarity=0.118 Sum_probs=36.2
Q ss_pred cceEEecccccccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHH
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
.+++++||.+|.|+++|...+. ...++++|..++||+|+.+.+..
T Consensus 193 ~~v~~~Sa~~~~gl~~L~~~~~-------------------------G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 193 YRVLMVSSHTQDGLKPLEEALT-------------------------GRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp CCEEECBTTTTBTHHHHHHHHT-------------------------TSEEEEECCTTSSHHHHHHHHHC
T ss_pred CcEEEEecCCCcCHHHHHHhcC-------------------------CCEEEEECCCCccHHHHHHHHhc
Confidence 4589999999999988765321 12478999999999999999975
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0035 Score=48.77 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=24.5
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..+++.|+|+|.+|+||||+...|....+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45667899999999999999999976554
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0024 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..|+|+|++|+|||||++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0023 Score=48.40 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..|+|+|++|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976544
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0028 Score=49.67 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.+.|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999753
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0025 Score=49.64 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++.|+|+|.+|+|||||.+.|....+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999977544
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0027 Score=51.21 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
+..|+|+|++|+|||||++.|....+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999854443
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.002 Score=48.95 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.6
Q ss_pred eeEEEEecCCCChHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRL 48 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l 48 (257)
-.++++|++|+|||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999964
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0018 Score=55.34 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.1
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++++|++|+|||||+|.|++.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 6899999999999999999753
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0012 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..++|+|++|+|||||++.|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0029 Score=49.27 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=23.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+...|+++|.+|+||||+...|....+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999976544
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0032 Score=48.81 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.7
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++..|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999765
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0035 Score=48.17 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.++|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999775
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0029 Score=48.22 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=20.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+++.++++|.+|+|||||+.+|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.012 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHH
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..+...|+|+|..++|||+|+|.|+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHH
Confidence 45677899999999999999997764
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0033 Score=47.21 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+++|.+|+||||+.+.| ...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 36899999999999999999 5444
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0033 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.|+|+|.+|+||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999976
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0046 Score=49.07 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=26.5
Q ss_pred CCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCcc
Q psy12244 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTV 55 (257)
Q Consensus 20 ~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~ 55 (257)
|......+++.|.|+|++||||+|....|....+..
T Consensus 21 ~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 21 MTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp ---CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred ccchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 344444567788999999999999999998765543
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.004 Score=47.74 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.|+|.|.+|+||||+.+.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999997643
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0021 Score=51.73 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999854
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0034 Score=47.22 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
-.++++|+.|+|||||++.|.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999997754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0051 Score=47.12 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++.|+++|.+|+||||+...|....+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999976544
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0032 Score=51.47 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
-.++|+|++|+|||||++.|++.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999998763
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0038 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0032 Score=52.64 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.4
Q ss_pred eeEEEEecCCCChHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~ 49 (257)
..++++|++|+|||||+|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0025 Score=50.81 Aligned_cols=21 Identities=43% Similarity=0.235 Sum_probs=18.9
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999854
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0034 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++|+|++|+|||||++.|++.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 36899999999999999999764
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0049 Score=47.34 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
...|+++|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999976544
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.00098 Score=58.69 Aligned_cols=55 Identities=44% Similarity=0.617 Sum_probs=34.4
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC------------CC-----ccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GS-----SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g~-----~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+++++|++++||+++.+++++..|.+... |. .+++|..++|+++|+||..+..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~ 77 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM 77 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------C
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEE
Confidence 4689999999999999999999986655321 11 2568999999999999987654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0041 Score=47.81 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=19.3
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|++|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0035 Score=49.43 Aligned_cols=22 Identities=18% Similarity=-0.025 Sum_probs=20.1
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999774
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0048 Score=48.05 Aligned_cols=26 Identities=31% Similarity=0.185 Sum_probs=21.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+...|+|+|++|+|||||.+.|....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999986643
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0043 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..|+|+|++|+||||+.+.|....+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0033 Score=50.73 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-.++|+|+.|+|||||++.|.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999965
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=48.35 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.8
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++++|+.|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999998764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0049 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+|+|++|+|||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34557999999999999999998663
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0048 Score=47.17 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=22.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++|+++|.+|+||||+...|....+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976544
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0032 Score=50.72 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999954
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0056 Score=49.30 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+...|+|+|+.|+|||||++.|.+..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445799999999999999999977544
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0056 Score=46.43 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..|+++|.+|+||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999977543
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0058 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=22.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++..|+|+|++|+|||||++.|...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998653
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0057 Score=48.58 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+++.|+|+|.+|+||||+.+.|....+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999976554
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0055 Score=51.53 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+++.++|+|..|+|||||++.|++.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999999864
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0067 Score=50.24 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++..|+++|++|+|||||..+|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445679999999999999999997654
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0063 Score=46.46 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
...|+++|.+||||||+.+.|....+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976444
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.006 Score=50.68 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=21.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++..|+|+|++|+|||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999865
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0035 Score=50.62 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999955
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0048 Score=47.04 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...++++|++|+|||||+.++.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998653
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0033 Score=51.84 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999954
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0034 Score=49.76 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999954
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0056 Score=47.82 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+|+|.+|+|||||.+.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999653
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0036 Score=50.08 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999954
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0036 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999955
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0055 Score=47.42 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999977544
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.011 Score=45.90 Aligned_cols=35 Identities=11% Similarity=0.313 Sum_probs=27.7
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.+.+||||+... ......+..+|.+++++..+.
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~ 109 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSP 109 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCH
Confidence 37889999998763 455677888999999997764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0045 Score=50.24 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.8
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999763
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0034 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.270 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999954
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0051 Score=47.98 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.|+|+|.+|+||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999965
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0033 Score=51.59 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999954
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0044 Score=51.72 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++++|++|+|||||+|.|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 35899999999999999999653
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.006 Score=46.77 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++.|+++|.+|+||||+...|....+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999876544
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0036 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=15.5
Q ss_pred eeEEEEecCCCChHHHHHHHH-Hh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLL-EM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~-~~ 51 (257)
..++|+|++|+|||||++.|. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999997 54
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0035 Score=51.14 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999954
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0064 Score=46.77 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=22.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+++|.+|+||||+...|....+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999976544
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0066 Score=48.94 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=23.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+++.|+|+|.+||||||+...|....+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999976544
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0073 Score=47.05 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+...|+|+|.+|+|||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999865
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0053 Score=46.58 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=21.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++|+|+|.+|+||||+...|....+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999976544
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0063 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
+|+|+|.+||||||+.+.|....+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999765443
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.006 Score=48.25 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=22.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+++.|+|+|.+|+||||+.+.|....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999977554
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0071 Score=46.96 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=23.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++..|+|+|.+|+||||+.+.|....+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999976544
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0041 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999653
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0063 Score=50.89 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+++|+.|+|||||++.|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999998754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.005 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999763
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.007 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+|+|+|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976554
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0043 Score=50.03 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999954
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0023 Score=56.31 Aligned_cols=55 Identities=36% Similarity=0.564 Sum_probs=36.6
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC------------CC-------ccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GS-------SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g~-------~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+++++|++++||+|+.++++...+.+... +. .+.+|..++|++||+||..+..
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~ 97 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR 97 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee
Confidence 3679999999999999999999877644321 11 2357888999999999986644
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0061 Score=48.14 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.5
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|++|+|||||+..|+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0067 Score=47.86 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=22.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+++|.+|+||||+...|....+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999976544
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0044 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=18.9
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 478999999999999999854
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0076 Score=50.42 Aligned_cols=26 Identities=35% Similarity=0.208 Sum_probs=22.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+|+|+.|+|||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34457999999999999999999763
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0045 Score=50.90 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999954
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0071 Score=46.25 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.|+|.|.+|+||||+.+.|....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999997643
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0046 Score=50.38 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999954
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0051 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++|+|++|+|||||++.|+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999763
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0047 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 479999999999999999955
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.008 Score=48.62 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=23.9
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
..++..|+|.|.+|+||||+.+.|....+.
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345678999999999999999999775553
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0079 Score=48.75 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
...|+|+|++|+|||||.+.|....+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999975444
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0065 Score=51.97 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.0
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|++|+|||||++.|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999998763
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0076 Score=55.93 Aligned_cols=57 Identities=30% Similarity=0.393 Sum_probs=46.5
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeee
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
.+.++++++|+.++||+|+.++++...+.+...|. ..+.|+.+.|+++|+|+.....
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~ 67 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVA 67 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEE
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecce
Confidence 34578999999999999999999988776544443 4678999999999999977654
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0083 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|.|.+|+||||+.+.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999976443
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0077 Score=48.89 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|++|+|||||..+|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999977554
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0049 Score=50.88 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 478999999999999999954
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0092 Score=46.54 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.+.|+|.|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999654
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0063 Score=46.30 Aligned_cols=26 Identities=23% Similarity=0.059 Sum_probs=18.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++.|++.|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999976544
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0066 Score=45.08 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++++|++|+|||||++.+...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0053 Score=50.31 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999854
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0053 Score=49.91 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999954
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0081 Score=46.32 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.+.|+++|.+|+||||+...|....+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999976544
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.011 Score=49.29 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...++++|+.|+|||||++.|.+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0034 Score=52.57 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|++
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 579999999999999999854
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.012 Score=44.95 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+++|.+|+||||+...|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0081 Score=48.65 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=23.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++..|+++|.+|+||||+...|....+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4457899999999999999999977543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0044 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..+++|+|+.|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999997754
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0094 Score=46.17 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|+|+|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0055 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++|+|++|+|||||++.|++.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999653
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0029 Score=56.10 Aligned_cols=55 Identities=40% Similarity=0.523 Sum_probs=42.8
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+++++|++++||+|+.+++++..+.+.. .|. .+++|..+.|+++|+||..+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~ 78 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW 78 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE
Confidence 367899999999999999999987654421 122 2467889999999999876644
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0079 Score=51.77 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
--.++|+|++|+|||||++.|+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999763
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0066 Score=49.65 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.5
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999553
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.011 Score=49.95 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...++++|+.|+|||||++.|.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0071 Score=50.21 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999954
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0091 Score=44.94 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|.+|+||||+...|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976544
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0074 Score=51.72 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHhc
Confidence 478999999999999999965
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0079 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4799999999999999999653
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.011 Score=46.55 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+++|.+|+||||+.+.|....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999976544
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0093 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
++.|+++|.+|+||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.021 Score=47.08 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+++.|+|+|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999863
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.01 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.005 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.|+|+|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.011 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+|+|.|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976444
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.012 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976544
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.011 Score=49.94 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.|+|+|++++|||||...|....+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 345799999999999999999977554
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.018 Score=50.26 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=24.6
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.....+..|+++|.+|+||||+..+|....+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3344567799999999999999999976543
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.01 Score=45.30 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|.+|+||||+...|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3599999999999999999976544
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0091 Score=50.99 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999653
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.012 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=19.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..+|+|+.|+|||||+.+|....
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997643
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.011 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.068 Sum_probs=20.6
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++|+|++|+|||||++.|++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998743
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.016 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...++++|+.|+|||||++.|.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 34567999999999999999999764
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.013 Score=46.62 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=23.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++++|+++|.+|+||||+...|....+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999976544
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0086 Score=53.75 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+++|+|++|||||||+++|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0097 Score=50.93 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0098 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4799999999999999999653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.015 Score=43.94 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
....+.+.|++|+|||+|+.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998653
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.014 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.014 Score=45.81 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCcc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTV 55 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~ 55 (257)
+|+++|+|||||+|+...|....+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 58999999999999999998766543
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.01 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999999653
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.014 Score=46.84 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++..|+|.|++|+||||+.+.|....+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999976544
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.014 Score=43.75 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.+.+|+|.|.+|+||||+...|....+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999876544
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0063 Score=55.86 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.|+|+|+.|+|||||++.|.+.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC
T ss_pred CeEEEECCCCChHHHHHHHHhCC
Confidence 45999999999999999999764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.01 Score=50.99 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999999653
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=50.87 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.5
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999999653
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.017 Score=43.92 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=20.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...|+++|.+|+||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998653
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=46.97 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+|.|..|+|||||++.|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998765
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.013 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999763
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.076 Score=43.63 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...+.+.|++|+|||+|+.++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999999999663
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.01 Score=52.87 Aligned_cols=56 Identities=39% Similarity=0.522 Sum_probs=33.6
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++|++++||+|+.+++++..+.+.. .|. .+++|....|+++|+|+......
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~ 105 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH 105 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE
Confidence 367899999999999999999998665532 121 46789999999999999776543
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.018 Score=45.62 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.|+++|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976544
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.018 Score=46.41 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.9
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.016 Score=46.96 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
-.+|+|+|.+|+||||+.+.|....+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999976444
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.017 Score=47.39 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++++|++|+|||||++++.+..
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHc
Confidence 49999999999999999997643
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.023 Score=47.45 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++.|+|+|++++|||||...|....+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45688999999999999999987654
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.036 Score=46.53 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...|.|.|++|+|||+|+.++...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999999653
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.022 Score=44.54 Aligned_cols=25 Identities=32% Similarity=0.195 Sum_probs=21.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|+++|.+|+||||+...|...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998653
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.023 Score=48.11 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|+++||||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.016 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++|+|+.|+|||||++.|++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 35899999999999999999764
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.017 Score=45.41 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|++|+|||||+..|+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999874
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.058 Score=47.33 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++-|.+.|++|+|||+|..++....+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 456799999999999999999976443
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.0092 Score=50.85 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4799999999999999999653
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.029 Score=47.17 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|++|+|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999987654
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=94.60 E-value=0.017 Score=50.13 Aligned_cols=55 Identities=31% Similarity=0.413 Sum_probs=40.4
Q ss_pred hcceeeEeeecccchhhHHHHHHhh---CCcccCCCccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMT---GTVLSSGSSQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~---g~~~~~g~~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+++++|++++||+|+.+++.... |........+.+|..+.|+++|+|+..+..
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~ 68 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHV 68 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeee
Confidence 3679999999999999999998742 210011123368999999999999876543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.019 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
..++++|++|+|||||++.+.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 568999999999999999998754
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.021 Score=47.18 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.5
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|++|+|||||+..|...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999998653
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.031 Score=44.56 Aligned_cols=27 Identities=11% Similarity=0.056 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+...|++.|.+|+||||+++.|.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 446799999999999999999977543
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.025 Score=45.08 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=23.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.+...|+|+|.+|+||||+.+.|....+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455799999999999999999976444
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.032 Score=43.26 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
....|+|+|.+||||||+.+.|....+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999976534
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.021 Score=42.29 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=18.7
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
-.+|+|+.|+|||||+.+|..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999864
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.023 Score=46.52 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.9
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++++|++|+|||||++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999764
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.026 Score=43.68 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+.+.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998653
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.02 Score=43.19 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
....+.+.|++|+|||+|+..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.009 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4799999999999999999653
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.028 Score=45.32 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
++.|.++|++|+|||||+.++...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999999653
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.12 Score=43.25 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|.+.|++|+|||+|..++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 467999999999999999999664
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.026 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++|+|+.|+|||||++.|.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.023 Score=48.64 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=18.2
Q ss_pred EEEEecCCCChHHHHHHHHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~ 50 (257)
.+|+|+.|+|||||+++++.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999874
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.028 Score=44.29 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...+.|.|++|+|||+|+.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998653
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.019 Score=47.65 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=18.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.+.|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998764
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.038 Score=46.12 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+...|+++|++|+||||++..|...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 45567999999999999999998653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.027 Score=44.01 Aligned_cols=21 Identities=24% Similarity=0.072 Sum_probs=19.4
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|++|+|||||+..|+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999976
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.03 Score=46.50 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+...|+++|+.|+||||++..|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.027 Score=50.09 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=20.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
-.++|+|+.|+|||||++.|.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999997643
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.15 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|.|.|++|+|||+|+.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999654
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.032 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..|+++|.+|+||||+.++|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.037 Score=46.36 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|++++|||||...|....+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4689999999999999999976543
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.022 Score=51.97 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999955
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.029 Score=44.52 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.9
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|++|+|||||+..|+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999873
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.024 Score=51.67 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.3
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999965
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.033 Score=47.98 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...++++|++|+|||||++.|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999965
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.012 Score=54.01 Aligned_cols=55 Identities=40% Similarity=0.532 Sum_probs=43.4
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCccc------------CCC-----ccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLS------------SGS-----SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~------------~g~-----~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+++++|++++||+|+.+++++..+.+.. .|. .++.|..+.|+++|+|+.....
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~ 238 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTS 238 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCC
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeE
Confidence 457999999999999999999987665432 122 5678899999999999876543
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.035 Score=42.94 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcC
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.|+|.|.+|+||||+...|....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999976544
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.035 Score=43.35 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=21.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|+|++|+|||||...|...-.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999976433
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.027 Score=50.85 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=19.4
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999965
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.092 Score=44.67 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=21.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+.|.+.|++|+|||+|+.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999653
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.034 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++|+|+.|+|||||++.|.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.043 Score=43.82 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
++.|++.|..|+||||+++.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999997654
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.12 Score=45.17 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=22.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++-|.+.|++|+|||+|..++....+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345699999999999999999976443
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.79 E-value=0.022 Score=46.23 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.+.|+|.|..|+||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999998654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.024 Score=51.93 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999854
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.037 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.7
Q ss_pred CceeeEEEEecCCCChHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRL 48 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l 48 (257)
.+..+|.++|.+++|||||+.+|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45779999999999999999986
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.076 Score=44.12 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..|.|.|++|+|||+|+.++..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999865
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.11 Score=45.54 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++-|.+.|++|+|||+|..++....+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999977543
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.18 Score=39.25 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=26.6
Q ss_pred cEEEEEeCCCCC-cccHHHHHHhhhhcceEEEEEecCc
Q psy12244 94 EYLLNLIDTPGH-VDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 94 ~~~~~liDtpG~-~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.+.++|||+. ... .....+..+|.+|+++..+.
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~ 102 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA 102 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc
Confidence 377899999997 543 34556788999999987764
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.064 Score=44.34 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=21.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++.+.+.|++|+|||+|..++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567788999999999999997654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.044 Score=44.87 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|++|+|||||+..|+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999875
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.057 Score=43.34 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=21.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..++.|.+.|++|+|||+|+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999653
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.046 Score=42.26 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..+.+.|++|+|||+|+..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999865
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.029 Score=50.67 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-.++|+|+.|+|||||++.|.+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999999965
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.038 Score=50.66 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.4
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 589999999999999999975
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.054 Score=44.24 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
....+.+.|++|+|||+|+.++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999664
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.05 Score=42.59 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=21.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..|+|+|.+|+||||+...|....+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999876544
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.28 Score=39.57 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=26.8
Q ss_pred cEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 94 EYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 94 ~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+.+.+||||+... ......+..+|.+|+++..+.
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~ 178 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK 178 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh
Confidence 47789999998654 335566777999999997763
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=93.39 E-value=0.02 Score=52.12 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=18.9
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 579999999999999999854
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.064 Score=42.62 Aligned_cols=28 Identities=18% Similarity=0.024 Sum_probs=22.3
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...+..-|++.|..|+||||+++.|...
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445677999999999999999998653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.026 Score=56.44 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
+|+|||++|+|||||++.|+.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999999854
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.064 Score=44.28 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...++.+.|++|+|||+|..++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999987653
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.057 Score=42.27 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+.|.|++|+|||+|+..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998754
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.057 Score=41.13 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.-|++.|++|+|||||.-.|+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35889999999999999999764
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.14 Score=44.28 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++-|.+.|++|+|||.|..++....+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 356799999999999999999976543
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.025 Score=51.66 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999854
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.073 Score=45.30 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
...++|+++|++|+|||||...|....
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345689999999999999999886543
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.076 Score=43.12 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.....+.+.|++|+|||+|..++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999999999653
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=93.16 E-value=0.23 Score=43.62 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|.+.|++|+|||+|+.++...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999664
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.057 Score=46.00 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.++|.|++|+|||||+..+....
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999997643
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.039 Score=50.55 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=0.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhC
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.047 Score=49.27 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.7
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999763
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.06 Score=45.63 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
....++|.|++|+|||||++.+...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998763
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.067 Score=44.33 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
...|.+.|++|+|||+|+.++....
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 4568999999999999999997643
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.042 Score=49.58 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999965
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.93 E-value=0.053 Score=45.76 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.+++.+.|++|+|||||+..|.+
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 334499999999999999999877
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 257 | ||||
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 4e-31 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 3e-19 | |
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 1e-27 | |
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 7e-16 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 6e-27 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 2e-11 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 8e-24 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 3e-10 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 1e-21 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 5e-12 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 2e-21 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 1e-07 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 5e-19 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 9e-12 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 9e-18 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 4e-16 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 2e-14 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 3e-09 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 8e-14 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 5e-10 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 2e-10 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 2e-10 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 3e-10 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 2e-08 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 5e-10 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 6e-09 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 4e-04 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 0.002 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 0.002 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 0.003 |
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 115 bits (289), Expect = 4e-31
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 38/165 (23%)
Query: 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTA 82
+ +RN S+IAHVDHGKSTL D L++ G + + +G ++ D+ + EQERGIT+K+
Sbjct: 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 73
Query: 83 SLRYTS----------ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA---- 128
SL DG +L+NLID+PGHVDFS+EVT +L G ++++D
Sbjct: 74 SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 133
Query: 129 ----------------------NQVDLKNANPEACEEQLQTLFNI 151
N+VD + +E L F
Sbjct: 134 CVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFAR 178
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.2 bits (205), Expect = 3e-19
Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLS--SGSSQVLDSLQVEQERGITVKAQTA 255
+ +RN S+IAHVDHGKSTL D L++ G + + +G ++ D+ + EQERGIT+K+
Sbjct: 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI 73
Query: 256 SL 257
SL
Sbjct: 74 SL 75
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 105 bits (262), Expect = 1e-27
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 24/196 (12%)
Query: 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKA 79
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 2 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 61
Query: 80 QTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVDLKNANPE 139
+ + +++ +N+ID PGHVDF+ EV RS+ G +++ D++ +
Sbjct: 62 AVTTCFW------KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSS---------Q 106
Query: 140 ACEEQLQTLFN-IDKKSVLRIWHRRCFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPI 198
E Q +T++ +K V RI L + + L ++ + +PI
Sbjct: 107 GVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL---GARPVVMQ-LPI 162
Query: 199 ARIRNFSIIAHVDHGK 214
R FS I V K
Sbjct: 163 GREDTFSGIIDVLRMK 178
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 72.8 bits (178), Expect = 7e-16
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 197 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKA 252
+ R+RN I AH+D GK+T +R+L TG + G + +D ++ E+ERGIT+ A
Sbjct: 2 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA 61
Query: 253 Q 253
Sbjct: 62 A 62
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 101 bits (253), Expect = 6e-27
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGS---SQVLDSLQVEQERGITVKAQTASLRY 86
N I HVDHGK+TL L + + +D E+ RGIT+
Sbjct: 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 64
Query: 87 TSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
+ + +D PGH D+ + A G +L++ A
Sbjct: 65 ------AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD 102
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 59.6 bits (144), Expect = 2e-11
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGS---SQVLDSLQVEQERGITVKAQTAS 256
N I HVDHGK+TL L + + +D E+ RGIT+
Sbjct: 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVE 61
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 93.7 bits (232), Expect = 8e-24
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 27/147 (18%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-----------------VLDSLQVEQE 72
N +I HVDHGKSTL RLL G + + +LD L+ E+E
Sbjct: 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 64
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQVD 132
RG+T+ + ++Y +ID PGH DF + + +L++ A
Sbjct: 65 RGVTINLTFMR------FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAK--- 115
Query: 133 LKNANPEACEEQLQTLFNIDKKSVLRI 159
K + QT +I + +
Sbjct: 116 -KGEYEAGMSVEGQTREHIILAKTMGL 141
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 56.4 bits (135), Expect = 3e-10
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 17/72 (23%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-----------------VLDSLQVEQE 245
N +I HVDHGKSTL RLL G + + +LD L+ E+E
Sbjct: 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 64
Query: 246 RGITVKAQTASL 257
RG+T+
Sbjct: 65 RGVTINLTFMRF 76
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 87.0 bits (215), Expect = 1e-21
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYT 87
N I HVDHGK+TL + ++ + + +D+ E+ RGIT+ A
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 64
Query: 88 SILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
D PGH D+ + A G +L++ AN
Sbjct: 65 ------ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND 101
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 60.8 bits (147), Expect = 5e-12
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASL 257
N I HVDHGK+TL + ++ + + +D+ E+ RGIT+ A
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY 61
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.8 bits (217), Expect = 2e-21
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 23/118 (19%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-----------------VLDSLQVEQE 72
N +I HVD GKST L+ G + + VLD L+ E+E
Sbjct: 8 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 67
Query: 73 RGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
RGIT+ +Y + +ID PGH DF + + +L+I
Sbjct: 68 RGITIDIALWKFET------PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 119
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.9 bits (116), Expect = 1e-07
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 17/65 (26%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-----------------VLDSLQVEQE 245
N +I HVD GKST L+ G + + VLD L+ E+E
Sbjct: 8 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 67
Query: 246 RGITV 250
RGIT+
Sbjct: 68 RGITI 72
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 80.7 bits (198), Expect = 5e-19
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 25/122 (20%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-------------------VLDSLQ 68
+ F +VD GKSTL RLL + + ++D LQ
Sbjct: 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQ 68
Query: 69 VEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA 128
E+E+GIT+ + + DTPGH ++ + + C ++L+DA
Sbjct: 69 AEREQGITIDVAYRYFSTA------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDA 122
Query: 129 NQ 130
Sbjct: 123 RY 124
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 60.6 bits (146), Expect = 9e-12
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 19/75 (25%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ-------------------VLDSLQ 241
+ F +VD GKSTL RLL + + ++D LQ
Sbjct: 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQ 68
Query: 242 VEQERGITVKAQTAS 256
E+E+GIT+
Sbjct: 69 AEREQGITIDVAYRY 83
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 78.0 bits (191), Expect = 9e-18
Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 13/149 (8%)
Query: 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ----VLDSLQVEQERGITVKAQTAS 83
IR +++ H GK+TL + LL TG G + D + TV+ A
Sbjct: 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAP 61
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDAN---QVDLKNANPEA 140
L + + + L+D PG+ DF E+ +L A ++ + A QV + A A
Sbjct: 62 LLFR------GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVA 115
Query: 141 CEEQLQTLFNIDKKSVLRIWHRRCFSCAD 169
L + + K ++
Sbjct: 116 ERLGLPRMVVVTKLDKGGDYYALLEDLRS 144
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 73.8 bits (180), Expect = 4e-16
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQ----VLDSLQVEQERGITVKAQ 253
IR +++ H GK+TL + LL TG G + D + TV+
Sbjct: 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTG 58
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 68.1 bits (165), Expect = 2e-14
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVL--DSLQVEQERGITVKAQTASLRYT 87
N ++ HVDHGK+TL + + + S + + E G+ + T
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVT 69
Query: 88 ---------SILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
++ ID PGH + A G +L++ AN+
Sbjct: 70 EPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 53.4 bits (127), Expect = 3e-09
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVL--DSLQVEQERGITVKAQ 253
N ++ HVDHGK+TL + + + S + + E G+ +
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCK 62
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 66.8 bits (162), Expect = 8e-14
Identities = 38/158 (24%), Positives = 56/158 (35%), Gaps = 27/158 (17%)
Query: 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQV----------------- 63
+D+ N I HVD GKSTL +L +TG V ++
Sbjct: 17 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWA 76
Query: 64 LDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVV 123
LDS E+E+G TV+ A +L+D PGH + + + V
Sbjct: 77 LDSTSEEREKGKTVEVGRAYFETE------HRRFSLLDAPGHKGYVTNMINGASQADIGV 130
Query: 124 LLIDANQVDLKNANPEACEEQLQTLFNIDKKSVLRIWH 161
L+I A + + E QT + I H
Sbjct: 131 LVISARRGEF----EAGFERGGQTREHAVLARTQGINH 164
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 56.0 bits (134), Expect = 5e-10
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 22/94 (23%)
Query: 175 DSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSS 234
D+T+L + + + K D+ N I HVD GKSTL +L +TG V
Sbjct: 3 DATDLQNEVDQELLK-----DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTME 57
Query: 235 QV-----------------LDSLQVEQERGITVK 251
++ LDS E+E+G TV+
Sbjct: 58 KIEREAKEAGKESWYLSWALDSTSEEREKGKTVE 91
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 56.3 bits (134), Expect = 2e-10
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 78
N I H+DHGK+TL+ L E+ T D L Q+RGIT+
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIAST-------SAHDKLPESQKRGITID 48
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 56.3 bits (134), Expect = 2e-10
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVK 251
N I H+DHGK+TL+ L E+ T D L Q+RGIT+
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIAST-------SAHDKLPESQKRGITID 48
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 55.8 bits (133), Expect = 3e-10
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQ--TAS 83
N ++ HVDHGK+TL L + S G + + E R +
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 66
Query: 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130
Y ++ ID PGH + + G +L+I AN+
Sbjct: 67 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 113
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 50.8 bits (120), Expect = 2e-08
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKA 252
N ++ HVDHGK+TL L + D+ E RGIT+K
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWT-----------DTHSEELRRGITIKI 45
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 55.8 bits (133), Expect = 5e-10
Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 32/200 (16%)
Query: 27 RIRN--FSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASL 84
+IR+ S++ HVDHGK+TL D + +G + + + ++
Sbjct: 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGG--ITQHIGATEIPMDVIEGICGDF 59
Query: 85 RYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDA---------------- 128
+ L IDTPGH F+ R A +L++D
Sbjct: 60 LKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILR 119
Query: 129 ----------NQVDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTN 178
N++D + F+ V + + + +
Sbjct: 120 MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFES 179
Query: 179 LNDGLAKPDSKATPYEDIPI 198
+ IPI
Sbjct: 180 ERFDRVTDFASQVSI--IPI 197
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 52.8 bits (125), Expect = 6e-09
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 200 RIRN--FSIIAHVDHGKSTLADRLLEMTGTVLSSG 232
+IR+ S++ HVDHGK+TL D + +G
Sbjct: 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAG 36
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.8 bits (87), Expect = 4e-04
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 40 GKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99
GK+ + R E D+ I + + ++ DG+ L +
Sbjct: 18 GKTCVLFRFSE--------------DAFNSTFISTIGIDFKIRTIEL----DGKRIKLQI 59
Query: 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDAN 129
DT G F T G++L+ D
Sbjct: 60 WDTAGQERFRTITTAYYRGAMGIMLVYDIT 89
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 36.2 bits (82), Expect = 0.002
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 30 NFSIIAHVDHGKSTLADRLLEMTGTVLS 57
+I+ + GKSTL + +L ++S
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVS 37
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 36.2 bits (82), Expect = 0.002
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 203 NFSIIAHVDHGKSTLADRLLEMTGTVLS 230
+I+ + GKSTL + +L ++S
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVS 37
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 35.7 bits (81), Expect = 0.003
Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 28/128 (21%)
Query: 33 IIAHVDHGKSTLADRLLEMTGTV-------LSSGSSQVLDSLQVEQERGIT--------- 76
+ GK+TL L +G ++ ++ +T
Sbjct: 5 FVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGY 64
Query: 77 ------------VKAQTASLRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVL 124
+ + + +E LIDTPG ++ + + +
Sbjct: 65 GPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY 124
Query: 125 LIDANQVD 132
+ D
Sbjct: 125 PLVVYISD 132
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 257 | |||
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.94 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.94 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.94 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.92 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.92 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.92 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.91 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.89 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.88 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.87 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.83 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.8 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.79 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.78 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.77 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.77 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.77 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.77 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.76 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.76 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.75 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.75 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.75 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.75 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.74 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.73 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.72 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.72 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.71 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.71 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.71 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.71 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.7 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.69 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.69 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.68 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.67 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.67 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.66 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.66 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.65 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.65 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.63 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.62 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.61 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.6 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.6 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.6 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.57 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.56 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.55 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.54 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.51 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.44 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.41 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.39 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.31 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.22 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.17 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.1 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.03 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.02 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.99 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.93 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.91 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 98.77 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.7 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.69 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.56 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 98.56 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.49 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.42 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.34 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.34 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.16 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.1 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.03 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.91 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.69 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 97.62 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.58 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.5 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 97.41 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.36 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.33 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.31 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.28 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.24 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.21 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.17 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.14 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.11 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.97 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.91 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.86 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.8 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.76 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.72 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.71 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.69 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.69 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.65 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.62 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.53 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.52 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.46 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.46 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.45 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.41 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.39 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.37 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.34 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.32 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.31 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.3 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.29 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.29 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.27 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 96.26 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.25 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.22 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.22 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.21 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.2 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 96.18 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.14 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 96.13 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 96.12 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.11 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 96.11 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.05 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.04 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.01 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 95.99 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.96 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.91 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.89 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.88 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 95.88 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 95.87 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 95.87 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 95.77 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 95.75 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 95.73 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 95.72 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 95.6 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.57 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.54 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 95.54 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.48 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.42 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 95.39 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.37 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.31 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.31 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 95.26 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.21 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 95.2 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.17 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.09 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.06 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.05 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.02 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.95 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.72 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.56 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.54 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.51 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.5 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.38 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.24 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.09 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.05 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.99 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.95 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.76 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.68 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.58 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.37 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.33 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.31 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.16 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.1 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.09 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.02 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.0 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 92.83 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.8 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.58 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.48 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.47 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.46 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.36 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.2 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.2 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 92.08 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.79 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.75 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 91.65 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.55 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 91.18 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 90.96 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 90.77 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.72 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.51 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.37 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 90.33 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.99 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 89.99 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 89.97 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.82 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.41 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 89.34 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.2 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.9 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 88.53 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.46 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.4 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.39 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.96 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 87.6 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 87.4 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.39 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.21 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.22 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 86.15 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 85.57 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 85.39 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.18 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 83.41 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 83.36 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 83.1 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 82.38 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 82.13 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 82.11 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 81.92 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 80.9 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 80.23 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 80.23 |
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=5.5e-27 Score=189.89 Aligned_cols=146 Identities=23% Similarity=0.339 Sum_probs=121.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeeccc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTSIL 90 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~ 90 (257)
..||+++||+++|||||+++|++..+.+... .+.+++|..+.|+++|+|++.....+.|..
T Consensus 6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-- 83 (239)
T d1f60a3 6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-- 83 (239)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence 4699999999999999999999988876431 566889999999999999999999999887
Q ss_pred CCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCC
Q psy12244 91 DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNA 136 (257)
Q Consensus 91 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~ 136 (257)
++++|+|||||.+|..++.++++.+|++||||||.. ||+.++
T Consensus 84 ----~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 84 ----YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp ----EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTT
T ss_pred ----EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCC
Confidence 999999999999999999999999999999999964 888777
Q ss_pred CH---HHHHHHHHHHh---CCC--ccceEEecccccccccccccccCCCcccCC
Q psy12244 137 NP---EACEEQLQTLF---NID--KKSVLRIWHRRCFSCADCHRSLDSTNLNDG 182 (257)
Q Consensus 137 ~~---~~~~~~~~~~~---~~~--~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~ 182 (257)
+. ++..+++..++ +.. ..+++|+||.+|.|+.+... ..+||++
T Consensus 160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~~s~---~~~wykg 210 (239)
T d1f60a3 160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT---NAPWYKG 210 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS---SCTTCCC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcceeccc---cCccccC
Confidence 64 34445555544 333 35689999999999887654 3468765
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.94 E-value=2.1e-26 Score=184.45 Aligned_cols=150 Identities=21% Similarity=0.340 Sum_probs=114.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------------CCcccccchHHHhhhCceEeceeeEEE
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------------GSSQVLDSLQVEQERGITVKAQTASLR 85 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------------~~~~~~d~~~~e~~~g~t~~~~~~~~~ 85 (257)
.+...+|+++||+++|||||+++|++..+.+... +..+.+|..+.|+++++|++.....+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 3467789999999999999999999988876432 344566777889999999988877777
Q ss_pred eecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCCH
Q psy12244 86 YTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNANP 138 (257)
Q Consensus 86 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~~ 138 (257)
+.. +.++|+|||||.+|..++.+++..+|++|+||||.. +|+.+++.
T Consensus 86 ~~~------~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~ 159 (222)
T d1zunb3 86 TAK------RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDE 159 (222)
T ss_dssp CSS------EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCH
T ss_pred ccc------eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccc
Confidence 766 899999999999999999999999999999999998 89877663
Q ss_pred ---HHHHHHHHHHh---CC--CccceEEecccccccccccccccCCCcccCCC
Q psy12244 139 ---EACEEQLQTLF---NI--DKKSVLRIWHRRCFSCADCHRSLDSTNLNDGL 183 (257)
Q Consensus 139 ---~~~~~~~~~~~---~~--~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~~ 183 (257)
+...+++..++ ++ ...+|+|+||++|+|+.+..+ .++||++.
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~~s~---~~~wy~g~ 209 (222)
T d1zunb3 160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE---RSPWYAGQ 209 (222)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT---TCTTCCSC
T ss_pred eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCcCcc---cCCCCcCC
Confidence 33334444443 33 335789999999999987654 45688863
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.94 E-value=8.6e-27 Score=189.59 Aligned_cols=155 Identities=26% Similarity=0.311 Sum_probs=96.1
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeE
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTAS 83 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~ 83 (257)
+.+...+..||+++||+++|||||+++|++..+.+... ..++..|....++++|++++.....
T Consensus 17 ~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~ 96 (245)
T d1r5ba3 17 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY 96 (245)
T ss_dssp HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred HHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc
Confidence 33444556799999999999999999999988876432 3467788999999999999988888
Q ss_pred EEeecccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc---------------------------------
Q psy12244 84 LRYTSILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------------- 130 (257)
Q Consensus 84 ~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------------- 130 (257)
+.+.. +.++|+|||||.+|..++.+++..+|++++|||+..
T Consensus 97 ~~~~~------~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iN 170 (245)
T d1r5ba3 97 FETEH------RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 170 (245)
T ss_dssp EECSS------EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred ccccc------ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEE
Confidence 88877 899999999999999999999999999999999965
Q ss_pred -cCCCCCC-----HHHHHHHHHHHh----CCC---ccceEEecccccccccccccccCCCcccCC
Q psy12244 131 -VDLKNAN-----PEACEEQLQTLF----NID---KKSVLRIWHRRCFSCADCHRSLDSTNLNDG 182 (257)
Q Consensus 131 -~D~~~~~-----~~~~~~~~~~~~----~~~---~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~ 182 (257)
+|+...+ ++++.+++...+ +.. ..+++|+||++|+||.++.+... ++||++
T Consensus 171 KmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s~~-~~wy~G 234 (245)
T d1r5ba3 171 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSV-CPWYQG 234 (245)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTT-CSSCCS
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhccC-CCCCCC
Confidence 8886543 344444554432 332 34799999999999999988754 689987
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.92 E-value=1.1e-26 Score=182.68 Aligned_cols=133 Identities=23% Similarity=0.351 Sum_probs=106.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
+..||+++||+|+|||||+++|++..+..... ...+..|....|+++|+|++.....+.+.. +.++++||||
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~------~~~~~iDtPG 75 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA------RHYAHTDCPG 75 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS------CEEEEEECSS
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece------eeEEeecCcc
Confidence 34789999999999999999998754332222 445567788889999999998888887766 8999999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC-
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI- 151 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~- 151 (257)
|.+|..++.++++.+|++|||||+.+ +|+.... ++.+.++++.++ ++
T Consensus 76 h~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 155 (196)
T d1d2ea3 76 HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (196)
T ss_dssp HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998 7875422 344555666554 44
Q ss_pred -CccceEEecccccc
Q psy12244 152 -DKKSVLRIWHRRCF 165 (257)
Q Consensus 152 -~~~~~i~iSa~~g~ 165 (257)
...|++++||++|.
T Consensus 156 ~~~~pii~iSa~~g~ 170 (196)
T d1d2ea3 156 GEETPIIVGSALCAL 170 (196)
T ss_dssp TTTSCEEECCHHHHH
T ss_pred cccCEEEEEEccccc
Confidence 34689999999984
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=1.6e-25 Score=177.27 Aligned_cols=135 Identities=24% Similarity=0.368 Sum_probs=110.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccC---CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS---GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~---~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
++.||+++||+|+|||||+++|++..+.+... ......|..++|+++|+|++.....+.|++ ++++|+|||
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~------~~i~iiDtP 75 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK------RHYSHVDCP 75 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS------CEEEEEECC
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC------eEEEEEeCC
Confidence 35799999999999999999999876655433 345567999999999999999999888877 899999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc---------------------------cCCCCCC--HHHHHHHHHHHh---CC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ---------------------------VDLKNAN--PEACEEQLQTLF---NI 151 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~---------------------------~D~~~~~--~~~~~~~~~~~~---~~ 151 (257)
||.+|..++..+++.+|++||||||.. ||+.+.. ++++.++++..+ ++
T Consensus 76 Gh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 155 (204)
T d2c78a3 76 GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 155 (204)
T ss_dssp CSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred CchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999988 7775432 455566666654 33
Q ss_pred --CccceEEecccccccc
Q psy12244 152 --DKKSVLRIWHRRCFSC 167 (257)
Q Consensus 152 --~~~~~i~iSa~~g~gi 167 (257)
...+++++||..|.+.
T Consensus 156 ~~~~i~~i~~sa~~~~~~ 173 (204)
T d2c78a3 156 PGDEVPVIRGSALLALEQ 173 (204)
T ss_dssp CTTTSCEEECCHHHHHHH
T ss_pred Ccccceeeeeechhhhhh
Confidence 2356899999877543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=8.2e-25 Score=179.50 Aligned_cols=144 Identities=31% Similarity=0.479 Sum_probs=112.7
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
..+++|||+|+||.++|||||+++|++..+.+.+. +..+.+|..++|+++|+|+......+.|++ ++++|
T Consensus 2 ~~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~------~~~n~ 75 (276)
T d2bv3a2 2 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD------HRINI 75 (276)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT------EEEEE
T ss_pred ChhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC------eEEEE
Confidence 45789999999999999999999999999988765 667889999999999999999999999988 99999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCc
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDK 153 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~ 153 (257)
+|||||.+|..++..+++.+|++|+|||+.+ ||+..+++.++.+++++.++...
T Consensus 76 iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~ 155 (276)
T d2bv3a2 76 IDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARP 155 (276)
T ss_dssp ECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCE
T ss_pred ecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHHHHhCCCe
Confidence 9999999999999999999999999999998 99999999999999999998776
Q ss_pred cce-EEecccccccccccccccC
Q psy12244 154 KSV-LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~-i~iSa~~g~gi~~l~~~i~ 175 (257)
.|+ +|+ -.|.++.-+.+.+.
T Consensus 156 vp~~~Pi--g~~~~f~GvvDl~~ 176 (276)
T d2bv3a2 156 VVMQLPI--GREDTFSGIIDVLR 176 (276)
T ss_dssp EECEEEE--SCGGGCCEEEETTT
T ss_pred EEEEecc--cCCCceeEEeeccc
Confidence 553 454 34444444444444
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.91 E-value=6.3e-25 Score=176.51 Aligned_cols=146 Identities=26% Similarity=0.437 Sum_probs=106.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccC-----------------CCcccccchHHHhhhCceEeceeeEEEeeccc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-----------------GSSQVLDSLQVEQERGITVKAQTASLRYTSIL 90 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-----------------~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~ 90 (257)
..||+++||+++|||||+.+|++..+.+... ...+.+|..+.|+++|+|+......+.++.
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-- 80 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-- 80 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC--
Confidence 5699999999999999999999877766433 235578889999999999998888888876
Q ss_pred CCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCC
Q psy12244 91 DGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNA 136 (257)
Q Consensus 91 ~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~ 136 (257)
+.++|||||||.+|..++..+++.+|++|+|||+.+ +|+...
T Consensus 81 ----~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~ 156 (224)
T d1jnya3 81 ----YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 156 (224)
T ss_dssp ----CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred ----ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCc
Confidence 899999999999999999999999999999999986 777543
Q ss_pred --C---HHHHHHHHHHHh---CC--CccceEEecccccccccccccccCCCcccCC
Q psy12244 137 --N---PEACEEQLQTLF---NI--DKKSVLRIWHRRCFSCADCHRSLDSTNLNDG 182 (257)
Q Consensus 137 --~---~~~~~~~~~~~~---~~--~~~~~i~iSa~~g~gi~~l~~~i~~~~~~~~ 182 (257)
+ ++.+.+.+..++ +. ...+++|+||..|.|+.+..+. .+||++
T Consensus 157 ~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~s~~---~~wy~~ 209 (224)
T d1jnya3 157 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSEN---MKWYNG 209 (224)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSS---CTTCCS
T ss_pred cccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccccccc---CCCccc
Confidence 2 233334444432 33 3457899999999999876543 458765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.89 E-value=1.7e-23 Score=164.61 Aligned_cols=138 Identities=22% Similarity=0.315 Sum_probs=100.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc-----------------
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI----------------- 89 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----------------- 89 (257)
...||+++||+|+|||||+|+|++.. .+....+..+|+|.+..+....+...
T Consensus 4 ~~inIaiiGhvd~GKSTL~~~L~g~~-----------~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (195)
T d1kk1a3 4 AEVNIGMVGHVDHGKTTLTKALTGVW-----------TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGH 72 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCC-----------CC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCC
T ss_pred CcEEEEEEeccCCcHHHHHHHHHhhh-----------hhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeee
Confidence 45689999999999999999997532 23444566677777665554433221
Q ss_pred cCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCC-HHH
Q psy12244 90 LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNAN-PEA 140 (257)
Q Consensus 90 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~-~~~ 140 (257)
.....+.++|+|||||.+|..++..+++.+|++++|+|+.+ +|+.+.. ...
T Consensus 73 ~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~ 152 (195)
T d1kk1a3 73 ETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALE 152 (195)
T ss_dssp BCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHH
T ss_pred eecCceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHH
Confidence 01123579999999999999999999999999999999988 6665432 223
Q ss_pred HHHHHHHHh---CCCccceEEecccccccccccccccC
Q psy12244 141 CEEQLQTLF---NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 141 ~~~~~~~~~---~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+.+.+++ .....|++|+||++|+|+++|++.|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~ 190 (195)
T d1kk1a3 153 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE 190 (195)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344445544 33456899999999999999988776
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.89 E-value=1.5e-23 Score=162.76 Aligned_cols=137 Identities=26% Similarity=0.439 Sum_probs=94.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..||+++|++|+|||||+|+|++.... ...+....++.+|++.......+.+.. +.++++|+|||.
T Consensus 4 k~inIaiiG~~naGKSTL~n~L~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~d~~g~~ 70 (179)
T d1wb1a4 4 KNINLGIFGHIDHGKTTLSKVLTEIAST-------SAHDKLPESQKRGITIDIGFSAFKLEN------YRITLVDAPGHA 70 (179)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC---------------------------CCCEEEETT------EEEEECCCSSHH
T ss_pred CCEEEEEEeCCCCcHHHHHHHHHHhcCc-------eecccccceeeeeeeccccccccccCC------cccccccccccc
Confidence 4568999999999999999999864322 234566778888998888888877776 899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHH-HHHHHH----HhCCCccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEAC-EEQLQT----LFNIDKKS 155 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~-~~~~~~----~~~~~~~~ 155 (257)
+|...+..++..+|++++|+|+.. +|+...+..+. .+.++. ..+....|
T Consensus 71 ~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (179)
T d1wb1a4 71 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS 150 (179)
T ss_dssp HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred ccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCe
Confidence 999999999999999999999997 78765432221 222222 22455568
Q ss_pred eEEecccccccccccccccCC
Q psy12244 156 VLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+||+||++|+|+++|++.|.+
T Consensus 151 iv~iSA~~g~gi~eL~~~I~~ 171 (179)
T d1wb1a4 151 IIPISAKTGFGVDELKNLIIT 171 (179)
T ss_dssp EEECCTTTCTTHHHHHHHHHH
T ss_pred EEEEEccCCcCHHHHHHHHHh
Confidence 999999999999999988863
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.88 E-value=1.4e-22 Score=165.73 Aligned_cols=139 Identities=22% Similarity=0.269 Sum_probs=115.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccC----CCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS----GSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~----~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
+|||+|+||.++|||||+++|++..+.+... +..+.+|..++|+++++|+......+.|++ ++++|||||
T Consensus 2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~------~~~n~iDtP 75 (267)
T d2dy1a2 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG------HRVFLLDAP 75 (267)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT------EEEEEEECC
T ss_pred eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc------cceeEEccC
Confidence 5899999999999999999999988887654 567889999999999999999999999988 899999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCccceE
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i 157 (257)
||.+|..++..+++.+|++|+|||+.. +|. ..++.+..+++++.++ ...| +
T Consensus 76 Gh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~-~~~~~~~l~~~~~~lg-~~vp-~ 152 (267)
T d2dy1a2 76 GYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK-GGDYYALLEDLRSTLG-PILP-I 152 (267)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG-CCCHHHHHHHHHHHHC-SEEE-C
T ss_pred chhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcccccccccccccc-cccchhhhhhHHHHhc-cCcC-e
Confidence 999999999999999999999999998 887 5688888899999887 4333 2
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
.+....|.+...+.+.+.
T Consensus 153 ~~Pi~~~~~f~GvvDl~~ 170 (267)
T d2dy1a2 153 DLPLYEGGKWVGLIDVFH 170 (267)
T ss_dssp EEEEEETTEEEEEEETTT
T ss_pred EeeeccCCceeEEeecCc
Confidence 233344444444444343
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.87 E-value=6.9e-23 Score=162.35 Aligned_cols=142 Identities=21% Similarity=0.283 Sum_probs=91.2
Q ss_pred CCCCce-eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc------------
Q psy12244 23 IPIARI-RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI------------ 89 (257)
Q Consensus 23 ~~~~~~-~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~------------ 89 (257)
+|..++ .||+++||+|+|||||+++|++....... .+..+..+.+.......+...
T Consensus 2 ~~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T d2qn6a3 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHS-----------EELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70 (205)
T ss_dssp CCCCCCCEEEEEECSTTSSHHHHHHHHHSCCC-------------------------CEEEEEEEEECTTSCTTTTEESS
T ss_pred CCCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhH-----------HHHHhhcccccchhhhhhhhhhhhhhhheeeec
Confidence 344444 69999999999999999999763332111 111111111111111110000
Q ss_pred ----------cCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------------c
Q psy12244 90 ----------LDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------------V 131 (257)
Q Consensus 90 ----------~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------~ 131 (257)
.....+.++++|||||.+|..++..++..+|++|+|+|+.+ +
T Consensus 71 ~~~~~~~~~~~~~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~ 150 (205)
T d2qn6a3 71 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKV 150 (205)
T ss_dssp SCCGGGTCCSCCEEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred ccceeeeeeccccceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccC
Confidence 01112579999999999999999999999999999999987 7
Q ss_pred CCCCCCH-HHHHHHHHHHh---CCCccceEEecccccccccccccccC
Q psy12244 132 DLKNANP-EACEEQLQTLF---NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 132 D~~~~~~-~~~~~~~~~~~---~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
|+.+.+. ....+.+.+.+ .....|++|+||++|.||++|++.|.
T Consensus 151 Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~ 198 (205)
T d2qn6a3 151 DVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIE 198 (205)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHH
Confidence 7765432 22233344433 34457899999999999999998877
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.83 E-value=6.2e-23 Score=165.10 Aligned_cols=96 Identities=29% Similarity=0.351 Sum_probs=63.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCC---cccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS---SQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPG 104 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~---~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG 104 (257)
+.|+|+||+|+|||||+|+|++..+.+..... .........+...+.+.... ...+.+ ...+++|+||||
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~iDtPG 79 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE------TLPGLFFIDTPG 79 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG------TCCEEEEECCCT
T ss_pred CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecc------cccccccccccc
Confidence 34999999999999999999987655433210 01111122222222222111 111222 236899999999
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|.+|...+..++..+|++|+|+||..
T Consensus 80 h~~f~~~~~~~~~~~D~~ilVvda~~ 105 (227)
T d1g7sa4 80 HEAFTTLRKRGGALADLAILIVDINE 105 (227)
T ss_dssp TSCCTTSBCSSSBSCSEEEEEEETTT
T ss_pred eecccccchhcccccceEEEEEeccc
Confidence 99999999999999999999999988
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1.5e-20 Score=158.44 Aligned_cols=106 Identities=46% Similarity=0.773 Sum_probs=79.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCccccC--CCcccccchHHHhhhCceEeceeeEEEeecc----------cCC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASLRYTSI----------LDG 92 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~----------~~~ 92 (257)
.+++|||+|+||.++|||||+++|+..++.+... .....+|..+.|+++|+|++.....+.|... .+.
T Consensus 14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~ 93 (341)
T d1n0ua2 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 93 (341)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence 4679999999999999999999999988877655 3344679999999999999988888766421 123
Q ss_pred ccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc
Q psy12244 93 EEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 93 ~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
+.+.++|||||||.+|..++..+++.+|++|+|||+.+
T Consensus 94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~e 131 (341)
T d1n0ua2 94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE 131 (341)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT
T ss_pred cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEeccc
Confidence 56889999999999999999999999999999999998
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=1.1e-19 Score=139.32 Aligned_cols=128 Identities=14% Similarity=0.185 Sum_probs=91.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+|+|||||+++|+...-. .+..+..+.+.....+.. ......+.+|||||++
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~l~~wDt~G~e 65 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFT--------------PAFVSTVGIDFKVKTIYR----NDKRIKLQIWDTAGQE 65 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--------------SSCCCCCSEEEEEEEEEE----TTEEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCC--------------cccccccccceeeEEEEe----ecceEEEEEEECCCch
Confidence 4678999999999999999999763211 111222233332333332 3455789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+|...+..+++.+|++|+|+|+++ +|+.+.. ..+..+++.+.++ .
T Consensus 66 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~---~ 142 (169)
T d3raba_ 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG---F 142 (169)
T ss_dssp GGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---C
T ss_pred hhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcC---C
Confidence 999999999999999999999998 5654322 1222334444445 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.||+++++.|.
T Consensus 143 ~~~e~Sak~g~gv~e~f~~l~ 163 (169)
T d3raba_ 143 EFFEASAKDNINVKQTFERLV 163 (169)
T ss_dssp EEEECBTTTTBSHHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHH
Confidence 699999999999999988775
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.5e-19 Score=138.75 Aligned_cols=128 Identities=17% Similarity=0.197 Sum_probs=92.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+|+|||||+++|+.... ..+..++.+.+.....+.+ .+..+.+.+|||||++
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f--------------~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~Dt~G~e 65 (171)
T d2ew1a1 4 FLFKIVLIGNAGVGKTCLVRRFTQGLF--------------PPGQGATIGVDFMIKTVEI----NGEKVKLQIWDTAGQE 65 (171)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--------------CTTCCCCCSEEEEEEEEEE----TTEEEEEEEEEECCSG
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCC--------------CCcccccccceEEEEEEEE----CCEEEEEEEEECCCch
Confidence 357899999999999999999976321 1112233344443444443 3455789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
.|...+..+++.+|++++|+|.++ +|+.+.. ..+..+++.+..+ .
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~---~ 142 (171)
T d2ew1a1 66 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD---M 142 (171)
T ss_dssp GGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT---C
T ss_pred hhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCC---C
Confidence 999999999999999999999887 5653321 1222334444444 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.||+++|..|.
T Consensus 143 ~~~~~SAktg~gV~e~f~~l~ 163 (171)
T d2ew1a1 143 YYLETSAKESDNVEKLFLDLA 163 (171)
T ss_dssp CEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEEccCCCCCHHHHHHHHH
Confidence 699999999999999987654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1.7e-19 Score=137.67 Aligned_cols=127 Identities=18% Similarity=0.211 Sum_probs=88.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+.+|+++|.+|+|||||+++|+...- ..+..++.+.+.....+.+ ++....+.+|||||++.
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~--------------~~~~~~t~~~~~~~~~i~~----~~~~~~~~i~Dt~G~~~ 63 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKF--------------NPSFITTIGIDFKIKTVDI----NGKKVKLQIWDTAGQER 63 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC--------------CC-------CCEEEEEEES----SSCEEEEEEECCTTGGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC--------------CCccCCccceeEEEEEEEE----CCEEEEEEEEECCCchh
Confidence 56899999999999999999976321 1122233333333333333 45668899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC-CHHHHHHHHHHHhCCCccce
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA-NPEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~-~~~~~~~~~~~~~~~~~~~~ 156 (257)
|...+...++.+|++++|+|.++ .|+... ...+..+.+....+ .++
T Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~---~~~ 140 (166)
T d1g16a_ 64 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG---IPF 140 (166)
T ss_dssp TSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT---CCE
T ss_pred hHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcC---CeE
Confidence 88888889999999999999998 333222 13333444444444 469
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.||+++++.|.
T Consensus 141 ~~~Sa~~~~~v~e~f~~l~ 159 (166)
T d1g16a_ 141 IESSAKNDDNVNEIFFTLA 159 (166)
T ss_dssp EECBTTTTBSHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH
Confidence 9999999999999988775
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.9e-19 Score=135.66 Aligned_cols=127 Identities=19% Similarity=0.207 Sum_probs=90.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+++|||||+++|++..-. .+..+..+.+.....+.. ++..+.+.+|||||+++
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~l~i~D~~g~~~ 65 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFM--------------ADCPHTIGVEFGTRIIEV----SGQKIKLQIWDTAGQER 65 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--------------SSCTTSCCCCEEEEEEEE----TTEEEEEEEEECTTGGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCC--------------CcccccccccceeEEEEE----CCEEEEEEEeccCCchh
Confidence 578999999999999999999763211 111222233322223333 45567999999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
|.......++.+|++++|+|.++ +|+.... ..+..+++.+..+ .+
T Consensus 66 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~---~~ 142 (166)
T d1z0fa1 66 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG---LL 142 (166)
T ss_dssp TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT---CE
T ss_pred HHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcC---CE
Confidence 99999999999999999999987 6653222 2222333444333 46
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.||+++|+.|.
T Consensus 143 ~~e~Saktg~~v~e~f~~i~ 162 (166)
T d1z0fa1 143 FLEASAKTGENVEDAFLEAA 162 (166)
T ss_dssp EEECCTTTCTTHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999987764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=4.8e-19 Score=136.65 Aligned_cols=128 Identities=23% Similarity=0.240 Sum_probs=90.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
....|+++|++|||||||+|+|++........ ..+.|...........+ ..+.++||||+.
T Consensus 4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~-------------~~~tt~~~~~~~~~~~~------~~~~~~DtpG~~ 64 (178)
T d1wf3a1 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-------------RPQTTRKRLRGILTEGR------RQIVFVDTPGLH 64 (178)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-------------SSCCCCSCEEEEEEETT------EEEEEEECCCCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecc-------------cCCcccccccceeeeee------eeeeeccccccc
Confidence 34579999999999999999998754332211 23344444444444444 789999999985
Q ss_pred c--------cHHHHHHhhhhcceEEEEEecCc----------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 107 D--------FSNEVTRSLAACQGVVLLIDANQ----------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 107 ~--------~~~~~~~~~~~aD~~ilVvd~~~----------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
. +...+..++..||++|+|+|++. +|+... .++..+.+.+.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~ 143 (178)
T d1wf3a1 65 KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY-PEEAMKAYHELLP 143 (178)
T ss_dssp CCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS-HHHHHHHHHHTST
T ss_pred ccccccchhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccC-HHHHHHHHHhhcc
Confidence 4 34445567789999999999987 666442 3444455555543
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...++++||++|.|+++|++.|.+
T Consensus 144 --~~~~~~iSA~~~~gi~~L~~~i~~ 167 (178)
T d1wf3a1 144 --EAEPRMLSALDERQVAELKADLLA 167 (178)
T ss_dssp --TSEEEECCTTCHHHHHHHHHHHHT
T ss_pred --cCceEEEecCCCCCHHHHHHHHHH
Confidence 346899999999999999998874
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=2.5e-19 Score=135.61 Aligned_cols=124 Identities=19% Similarity=0.285 Sum_probs=87.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
.+|+++|++|+|||||+|+|++........ ..+.|.......+.+.+ ..+.++||||+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~-------------~~~~~~~~~~~~~~~~~------~~~~~~Dt~G~~~~ 61 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-------------IPGTTRDVISEEIVIRG------ILFRIVDTAGVRSE 61 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCC-------------SSCCSSCSCCEEEEETT------EEEEEEESSCCCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeec-------------cccccccceeEEEEeCC------eeEEeccccccccC
Confidence 379999999999999999998765433221 22334444444455544 7899999999532
Q ss_pred --------cHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccc
Q psy12244 108 --------FSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 --------~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
........+..+|++++|+|++. +|+..... .+++...++. ..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~---~~~~~~~~~~-~~~ 137 (160)
T d1xzpa2 62 TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKIN---EEEIKNKLGT-DRH 137 (160)
T ss_dssp CCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCC---HHHHHHHHTC-STT
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhcccccceeeeeeccccchhh---hHHHHHHhCC-CCc
Confidence 23556677889999999999998 66644321 1223333333 357
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|+|+++|+++|.
T Consensus 138 ~~~vSA~~g~gi~~L~~~I~ 157 (160)
T d1xzpa2 138 MVKISALKGEGLEKLEESIY 157 (160)
T ss_dssp EEEEEGGGTCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 99999999999999998775
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.77 E-value=6.2e-19 Score=135.58 Aligned_cols=127 Identities=15% Similarity=0.065 Sum_probs=90.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|++|+|||||+++|....-.. ...+.......+.+.+ +.+.+||+||+
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-----------------~~~~~~~~~~~i~~~~------~~~~i~d~~g~ 70 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-----------------ITPTQGFNIKSVQSQG------FKLNVWDIGGQ 70 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-----------------EEEETTEEEEEEEETT------EEEEEEECSSC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcCCCCc-----------------ceeeeeeeEEEeccCC------eeEeEeecccc
Confidence 456789999999999999999995421100 0011111122333333 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHH-HhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQT-LFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~-~~~~~ 152 (257)
+.|...+...+..+|++++|+|+++ +|+.... .....+.+.. .....
T Consensus 71 ~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (176)
T d1fzqa_ 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDR 150 (176)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSS
T ss_pred ccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999987 7775543 3333333322 12334
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+++++||++|+|+++++++|.
T Consensus 151 ~~~~~~~SA~tg~gv~e~~~~l~ 173 (176)
T d1fzqa_ 151 VWQIQSCSALTGEGVQDGMNWVC 173 (176)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHH
Confidence 45799999999999999998775
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=3.2e-19 Score=137.13 Aligned_cols=129 Identities=16% Similarity=0.247 Sum_probs=68.3
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+.+|+++|.+++|||||+++|++.. +..+..+.++.+.....+.. ++..+.+.+|||||+
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~--------------~~~~~~~t~~~~~~~~~~~~----~~~~~~l~i~D~~G~ 65 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDA--------------FNSTFISTIGIDFKIRTIEL----DGKRIKLQIWDTAGQ 65 (173)
T ss_dssp SEEEEEEEECCCCC------------------------------CHHHHHCEEEEEEEEEE----TTEEEEEEEEEC---
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCC--------------CCCccCccccceEEEEEEEE----CCEEEEEEEEECCCc
Confidence 356789999999999999999996522 11222333444443444443 445588999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
+.|...+...++.+|++|+|+|+++ .|+.... ............+
T Consensus 66 e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~--- 142 (173)
T d2fu5c1 66 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG--- 142 (173)
T ss_dssp ------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT---
T ss_pred hhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcC---
Confidence 9999988899999999999999987 5554322 1222222333333
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++++||++|+||+++|++|.
T Consensus 143 ~~~~e~Sa~~g~gv~e~f~~l~ 164 (173)
T d2fu5c1 143 IKFMETSAKANINVENAFFTLA 164 (173)
T ss_dssp CEEEECCC---CCHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHH
Confidence 5699999999999999998775
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1.5e-18 Score=134.65 Aligned_cols=130 Identities=18% Similarity=0.211 Sum_probs=88.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|++|||||||+|+|++....+... ..+.+.......+.+.+ ..+.++||||+.
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~-------------~~~t~~~~~~~~~~~~~------~~~~~~d~~g~~ 67 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP-------------IPGTTRDPVDDEVFIDG------RKYVFVDTAGLR 67 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------------CC------CCEEEEETT------EEEEESSCSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeec-------------ccccccccceeeeccCC------ceeeeeccCCcc
Confidence 35689999999999999999998755433222 11223333333455544 778899999975
Q ss_pred c------------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCC---CHHHHHHHH
Q psy12244 107 D------------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNA---NPEACEEQL 145 (257)
Q Consensus 107 ~------------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~---~~~~~~~~~ 145 (257)
. +...+...+..+|++++|+|+.. +|+... ..++..+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~ 147 (186)
T d1mkya2 68 RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLF 147 (186)
T ss_dssp ----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHH
T ss_pred ccccccccccccchhHHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHH
Confidence 3 34556777889999999999987 666332 234444555
Q ss_pred HHHh-CCCccceEEecccccccccccccccC
Q psy12244 146 QTLF-NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 146 ~~~~-~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+.+ .....|++++||++|.|+++|++.|.
T Consensus 148 ~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~ 178 (186)
T d1mkya2 148 REKLYFIDYSPLIFTSADKGWNIDRMIDAMN 178 (186)
T ss_dssp HHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHhcccCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 5443 23456799999999999999998886
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.2e-18 Score=131.86 Aligned_cols=129 Identities=15% Similarity=0.170 Sum_probs=82.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+++|||||+++|+........ ....+..+.....+.. ++..+.+.||||||++
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~----~~~~~~l~i~Dt~G~e 67 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-------------FISTVGIDFRNKVLDV----DGVKVKLQMWDTAGQE 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-------------CCCCCSCEEEEEEEEE----TTEEEEEEEEECCCC-
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCccc-------------ccceeeeeeEEEEEEe----cCcEEEEEEEECCCch
Confidence 4578999999999999999999763211100 0111112222222222 4556889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+|...+...++.+|++++|+|.++ +|..+.. ..+...++.+.++ +
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~---~ 144 (170)
T d2g6ba1 68 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG---L 144 (170)
T ss_dssp -------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT---C
T ss_pred hhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcC---C
Confidence 999888899999999999999998 5554322 1223334444444 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.||+++++.|.
T Consensus 145 ~~~e~Sak~g~gi~e~f~~l~ 165 (170)
T d2g6ba1 145 PFMETSAKTGLNVDLAFTAIA 165 (170)
T ss_dssp CEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEEeCCCCcCHHHHHHHHH
Confidence 699999999999999988765
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.75 E-value=5.1e-19 Score=134.69 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=89.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+++|.+... .....|.......+.+.. ..+.+|||||+..
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-----------------~~~~~t~~~~~~~~~~~~------~~~~~~D~~G~~~ 58 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDV-----------------DTISPTLGFNIKTLEHRG------FKLNIWDVGGQKS 58 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCC-----------------SSCCCCSSEEEEEEEETT------EEEEEEEECCSHH
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCC-----------------CcccceEeeeeeeccccc------cceeeeecCcchh
Confidence 45799999999999999999954211 012234433334444444 8899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHH-HHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQ-TLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~-~~~~~~~~ 154 (257)
+...+...+..+|++++|+|+.+ +|+.+.. ..+..+.+. ..+.....
T Consensus 59 ~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 138 (165)
T d1ksha_ 59 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHW 138 (165)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE
T ss_pred hhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCC
Confidence 98888889999999999999887 7775433 222222222 12233445
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|+||++++++|.
T Consensus 139 ~~~~~Sa~~g~gv~e~~~~l~ 159 (165)
T d1ksha_ 139 RIQGCSAVTGEDLLPGIDWLL 159 (165)
T ss_dssp EEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999988775
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.3e-18 Score=135.04 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=93.7
Q ss_pred CCCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEE
Q psy12244 20 YEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNL 99 (257)
Q Consensus 20 ~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~l 99 (257)
|+..|.....+|+++|..|+|||||+++|+... .... .. .|+.. ........ .+..+.+.+
T Consensus 1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~--f~~~------------~~--~Ti~~-~~~~~~~~--~~~~~~l~i 61 (185)
T d2atxa1 1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDA--FPEE------------YV--PTVFD-HYAVSVTV--GGKQYLLGL 61 (185)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSS--CCCS------------CC--CSSCC-CEEEEEES--SSCEEEEEE
T ss_pred CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCC--CCCc------------CC--Cceee-eeeEEEee--CCceEEeec
Confidence 566777788999999999999999999997632 1110 01 12111 11111111 455688999
Q ss_pred eCCCCCcccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC------------
Q psy12244 100 IDTPGHVDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN------------ 137 (257)
Q Consensus 100 iDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~------------ 137 (257)
|||+|++.|...+...++.+|++++|+|+++ +|+.+..
T Consensus 62 ~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r 141 (185)
T d2atxa1 62 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEK 141 (185)
T ss_dssp ECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred ccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccc
Confidence 9999999998888889999999999999998 6764311
Q ss_pred ---HHHHHHHHHHHhCCCccceEEecccccccccccccccC
Q psy12244 138 ---PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 138 ---~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.++ ..++.+.++ ..+++++||++|.||+++|+.+.
T Consensus 142 ~v~~~~-~~~~a~~~~--~~~~~E~SAk~~~gv~e~F~~li 179 (185)
T d2atxa1 142 PICVEQ-GQKLAKEIG--ACCYVECSALTQKGLKTVFDEAI 179 (185)
T ss_dssp CCCHHH-HHHHHHHHT--CSCEEECCTTTCTTHHHHHHHHH
T ss_pred cccHHH-HHHHHHHcC--CCEEEEecCCCCcCHHHHHHHHH
Confidence 111 222333333 35689999999999999988664
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=1.3e-18 Score=136.17 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=89.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-+.+|+|+|.+|+|||||+++|+..... .+..++.+.......+.+ .+..+.+.+|||||++
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~--------------~~~~~t~~~~~~~~~i~~----~~~~~~l~i~Dt~G~e 66 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYT--------------NDYISTIGVDFKIKTVEL----DGKTVKLQIWDTAGQE 66 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC--------------TTCCCSSCCCEEEEEEEE----TTEEEEEEEECCTTTT
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCC--------------CCcCCccceeEEEEEEEE----eeEEEEEEEEECCCch
Confidence 4678999999999999999999753211 111112222222222322 3455889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+|...+..+++.+|++|+|+|++. +|+.+.. ..+......... ..
T Consensus 67 ~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~---~~ 143 (194)
T d2bcgy1 67 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN---KM 143 (194)
T ss_dssp TTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT---TC
T ss_pred hhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhcc---Cc
Confidence 998888889999999999999997 6664432 122222333322 34
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.||+++++.|.
T Consensus 144 ~~~e~SAk~g~gi~e~f~~l~ 164 (194)
T d2bcgy1 144 PFLETSALDSTNVEDAFLTMA 164 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHH
T ss_pred ceEEEecCcCccHHHHHHHHH
Confidence 689999999999999988876
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.6e-18 Score=132.57 Aligned_cols=124 Identities=15% Similarity=0.066 Sum_probs=80.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+++|.+.... . ....+.......+.+ ++..+.+.+|||||++.|
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~--------------~--~~~~~~~~~~~~i~~----~~~~~~l~i~D~~g~e~~ 61 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDG--------------P--EAEAAGHTYDRSIVV----DGEEASLMVYDIWEQDGG 61 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC-------------------------CEEEEEEEEE----TTEEEEEEEEECC-----
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccC--------------C--cCCeeeeeecceeec----cccccceeeeeccccccc
Confidence 58999999999999999999652110 0 000111111112222 456689999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
...+..+++.+|++|+|+|.++ +|+.+.. .....+++.+.++ ++
T Consensus 62 ~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~---~~ 138 (168)
T d2gjsa1 62 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD---CK 138 (168)
T ss_dssp --CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT---SE
T ss_pred ceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcC---CE
Confidence 9888999999999999999998 7764322 1222334444444 46
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.||+++|+.|.
T Consensus 139 ~~e~Sak~~~~v~~~f~~l~ 158 (168)
T d2gjsa1 139 FIETSAALHHNVQALFEGVV 158 (168)
T ss_dssp EEECBTTTTBSHHHHHHHHH
T ss_pred EEEEeCCCCcCHHHHHHHHH
Confidence 99999999999999988775
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.75 E-value=2.2e-18 Score=131.19 Aligned_cols=126 Identities=15% Similarity=0.096 Sum_probs=90.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|++|+|||||+++|..... .. ....|+......+.... ..+.+||+||+..
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~--~~--------------~~~~T~~~~~~~~~~~~------~~~~i~D~~G~~~ 59 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQF--NE--------------DMIPTVGFNMRKITKGN------VTIKLWDIGGQPR 59 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CC--------------SCCCCCSEEEEEEEETT------EEEEEEEECCSHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCC--CC--------------cccccceeeeeeeeeee------EEEEEeecccccc
Confidence 46899999999999999999965321 11 01123333333444443 7899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHHHH-hCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQTL-FNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~~~-~~~~~~ 154 (257)
|...+...+..+|++++|+|+++ +|+... +..+..+.+... +.....
T Consensus 60 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 139 (164)
T d1zd9a1 60 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREI 139 (164)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE
T ss_pred ccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999987 666543 234444443321 223345
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|+|+++++++|.
T Consensus 140 ~~~e~Sa~~g~gv~e~~~~l~ 160 (164)
T d1zd9a1 140 CCYSISCKEKDNIDITLQWLI 160 (164)
T ss_dssp EEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEEeCcCCcCHHHHHHHHH
Confidence 789999999999999988775
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=7.3e-19 Score=135.82 Aligned_cols=126 Identities=19% Similarity=0.240 Sum_probs=86.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc--
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV-- 106 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-- 106 (257)
.+|+|+|++|||||||+|+|++....+... .+.|......... ......+.+|||||+.
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~~~~~~~~~--------------~~~t~~~~~~~~~-----~~~~~~~~~~DtpG~~~~ 62 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY--------------PFTTLSPNLGVVE-----VSEEERFTLADIPGIIEG 62 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCC--------------TTCSSCCEEEEEE-----CSSSCEEEEEECCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecc--------------CCCceeeeeceee-----ecCCCeEEEcCCCeeecC
Confidence 469999999999999999996543322211 1222222222222 2223678999999954
Q ss_pred -----ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCHHHHHHHHHHHhC
Q psy12244 107 -----DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANPEACEEQLQTLFN 150 (257)
Q Consensus 107 -----~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~~~~~~~~~~~~~ 150 (257)
.+...+...+..+|++++++|+.. +|+.. ++..+++.+.+.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~ 139 (180)
T d1udxa2 63 ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE---EEAVKALADALA 139 (180)
T ss_dssp GGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC---HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhh---HHHHHHHHHHHH
Confidence 344567778899999999999875 66644 233344444454
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
....++|++||++|+|+++|++.|.+
T Consensus 140 ~~~~~~~~iSA~tg~gid~L~~~i~~ 165 (180)
T d1udxa2 140 REGLAVLPVSALTGAGLPALKEALHA 165 (180)
T ss_dssp TTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred hcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 45668999999999999999998863
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.6e-18 Score=131.81 Aligned_cols=126 Identities=14% Similarity=0.198 Sum_probs=90.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|..|+|||||+++|++..- ..+..+.++......... . ++..+.+.+||++|++++
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~--------------~~~~~~~~~~~~~~~~~~--~--~~~~~~~~i~d~~g~~~~ 62 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSF--------------DNTYQATIGIDFLSKTMY--L--EDRTIRLQLWDTAGQERF 62 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCC--------------CSSCCCCCSEEEEEEEEE--C--SSCEEEEEEEEECCSGGG
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCC--------------CCccccceeeeccceeec--c--CCCceeeeecccCCcchh
Confidence 3799999999999999999976321 111122223222222222 2 556689999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (257)
.......+..+|++++|+|.++ +|+.+.. ..+...++.+.++ +++
T Consensus 63 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~---~~~ 139 (164)
T d1yzqa1 63 RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN---VMF 139 (164)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT---CEE
T ss_pred ccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcC---CEE
Confidence 9999999999999999999998 7764322 2222333444333 469
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.||+++|+.|.
T Consensus 140 ~e~SAk~g~~v~e~f~~i~ 158 (164)
T d1yzqa1 140 IETSAKAGYNVKQLFRRVA 158 (164)
T ss_dssp EECCTTTCTTHHHHHHHHH
T ss_pred EEecCCCCcCHHHHHHHHH
Confidence 9999999999999998876
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.6e-18 Score=131.97 Aligned_cols=129 Identities=17% Similarity=0.158 Sum_probs=90.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
-..+|+++|.+|||||||+++|+...-. .+..+..... .....+.. +.....+.+|||||++
T Consensus 4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~--------------~~~~~t~~~~--~~~~~~~~--~~~~~~~~i~D~~G~~ 65 (174)
T d2bmea1 4 FLFKFLVIGNAGTGKSCLLHQFIEKKFK--------------DDSNHTIGVE--FGSKIINV--GGKYVKLQIWDTAGQE 65 (174)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--------------TTCCCCSEEE--EEEEEEEE--TTEEEEEEEEEECCSG
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCC--------------cccccccccc--eeeEEEEe--cCcceeEEEEECCCch
Confidence 3578999999999999999999753211 1111112222 12222222 4455789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+|...+...++.+|++++|+|.+. +|+.... ......++.+..+ +
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---~ 142 (174)
T d2bmea1 66 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENE---L 142 (174)
T ss_dssp GGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT---C
T ss_pred hhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCC---C
Confidence 999999999999999999999997 5653221 2233334444333 5
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.|++++|+.+.+
T Consensus 143 ~~~e~Sak~~~gi~e~f~~l~~ 164 (174)
T d2bmea1 143 MFLETSALTGENVEEAFVQCAR 164 (174)
T ss_dssp EEEECCTTTCTTHHHHHHHHHH
T ss_pred EEEEeeCCCCcCHHHHHHHHHH
Confidence 6999999999999999887753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.74 E-value=1.3e-18 Score=133.51 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=89.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|||||||+++|+..... ....|.........+. ...+.+||+||+
T Consensus 10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~-----------------~~~~t~~~~~~~~~~~------~~~~~i~D~~g~ 66 (173)
T d1e0sa_ 10 NKEMRILMLGLDAAGKTTILYKLKLGQSV-----------------TTIPTVGFNVETVTYK------NVKFNVWDVGGQ 66 (173)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHTTCCCCE-----------------EEEEETTEEEEEEEET------TEEEEEEEESCC
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCC-----------------CccceeeeeEEEeecc------ceeeEEecCCCc
Confidence 45578999999999999999998532110 1112222222222232 378999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHH-HHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQ-TLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~-~~~~~~ 152 (257)
..+...+...++.+|++++|+|++. +|+.+. ...+..+++. +.+...
T Consensus 67 ~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~ 146 (173)
T d1e0sa_ 67 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 146 (173)
T ss_dssp GGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSS
T ss_pred chhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987 777543 3333433332 122223
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+++++||++|+||++++++|.
T Consensus 147 ~~~~~e~SA~tg~gv~e~~~~l~ 169 (173)
T d1e0sa_ 147 NWYVQPSCATSGDGLYEGLTWLT 169 (173)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHH
T ss_pred CCEEEEeeCCCCcCHHHHHHHHH
Confidence 45689999999999999998875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.6e-18 Score=132.39 Aligned_cols=127 Identities=21% Similarity=0.244 Sum_probs=88.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+++|+...- ..+.....+.......+.+ ++..+.+.+|||||+++
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~Dt~G~~~ 68 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDTF--------------DPELAATIGVDFKVKTISV----DGNKAKLAIWDTAGQER 68 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--------------CTTCCCCCSEEEEEEEEEE----TTEEEEEEEEEECSSGG
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCC--------------CCccccceeecceeEEEEE----eccccEEEEEECCCchh
Confidence 35799999999999999999975321 1111222333333333333 34558899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~ 155 (257)
+...+...+..+|++++|+|.++ .|..... ......++.+..+ .+
T Consensus 69 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~---~~ 145 (177)
T d1x3sa1 69 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHS---ML 145 (177)
T ss_dssp GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTT---CE
T ss_pred hHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCC---CE
Confidence 98888889999999999999887 3432222 1222223344334 46
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|+||+++++++.
T Consensus 146 ~~e~Sa~tg~gv~e~f~~l~ 165 (177)
T d1x3sa1 146 FIEASAKTCDGVQCAFEELV 165 (177)
T ss_dssp EEECCTTTCTTHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998775
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=5.3e-18 Score=130.16 Aligned_cols=131 Identities=17% Similarity=0.242 Sum_probs=92.3
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
|+.+..+|+++|.+|+|||||+++|+..... .. ..+ ...+.....+.+ ++..+.+.+|||+
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~--~~------------~~~-t~~~~~~~~~~~----~~~~~~l~~~d~~ 62 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SD------------YDP-TIEDSYTKICSV----DGIPARLDILDTA 62 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SS------------CCT-TCCEEEEEEEEE----TTEEEEEEEEECC
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCC--cc------------ccc-ccccceeeEecc----CCeeeeeeccccc
Confidence 4567789999999999999999999753211 10 011 111222222332 4566899999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
|+.+|.......++.+|++|+|+|.++ +|+.... ..+..+.+.+.++
T Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~ 142 (173)
T d2fn4a1 63 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH 142 (173)
T ss_dssp CTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred cccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcC
Confidence 999998888899999999999999998 6653321 1222333333333
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.+++++||++|.||+++|+.|.+
T Consensus 143 ---~~~~e~Sak~g~gv~e~f~~l~~ 165 (173)
T d2fn4a1 143 ---VAYFEASAKLRLNVDEAFEQLVR 165 (173)
T ss_dssp ---CEEEECBTTTTBSHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCcCHHHHHHHHHH
Confidence 56999999999999999988763
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=2.8e-18 Score=130.50 Aligned_cols=126 Identities=17% Similarity=0.223 Sum_probs=89.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+++|++.... . +.. .|+........+.. ++....+.+|||+|+.++
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~--~------------~~~--~ti~~~~~~~~~~~--~~~~~~~~i~d~~g~~~~ 64 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFT--K------------DYK--KTIGVDFLERQIQV--NDEDVRLMLWDTAGQEEF 64 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC--C------------CSS--CCCSSSEEEEEEEE--TTEEEEEEEECCTTGGGT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC--c------------ccc--cccccccceeeeee--cCceeeeeeeccCCccch
Confidence 57999999999999999999763211 0 011 22222222233332 556688999999999998
Q ss_pred HHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCC--HHHHHHHHHHHhCCCccceE
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNAN--PEACEEQLQTLFNIDKKSVL 157 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~~i 157 (257)
.......++.+|++++|+|.++ +|+.+.. ..+..+++.+.++ ++++
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~---~~~~ 141 (164)
T d1z2aa1 65 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK---LRFY 141 (164)
T ss_dssp TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT---CEEE
T ss_pred hhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcC---CEEE
Confidence 8888888999999999999997 6664322 1222334444444 4699
Q ss_pred EecccccccccccccccC
Q psy12244 158 RIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 158 ~iSa~~g~gi~~l~~~i~ 175 (257)
++||++|.||+++|+.|.
T Consensus 142 e~Sak~g~~v~e~f~~l~ 159 (164)
T d1z2aa1 142 RTSVKEDLNVSEVFKYLA 159 (164)
T ss_dssp ECBTTTTBSSHHHHHHHH
T ss_pred EeccCCCcCHHHHHHHHH
Confidence 999999999999998765
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=4.4e-18 Score=130.87 Aligned_cols=128 Identities=18% Similarity=0.236 Sum_probs=90.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
.+.+|+++|.+|+|||||+++|++..-. .+..+..+.......+.+ ++....+.+|||||++
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~i~d~~g~e 64 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFN--------------LESKSTIGVEFATRSIQV----DGKTIKAQIWDTAGQE 64 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCC--------------C---CCCSCEEEEEEEEE----TTEEEEEEEEECSSGG
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCC--------------CcccccccceeeeEEEEE----CCEEEEEEecccCCcH
Confidence 4678999999999999999999763211 111222232222222332 4556889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+|...+...++.+|++|+|+|.++ +|+.+.+ ............ ..
T Consensus 65 ~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~---~~ 141 (175)
T d2f9la1 65 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN---NL 141 (175)
T ss_dssp GTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhccc---Cc
Confidence 999888899999999999999988 6764332 222223333332 35
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.|++++++.+.
T Consensus 142 ~~~e~Sa~~g~~i~e~f~~l~ 162 (175)
T d2f9la1 142 SFIETSALDSTNVEEAFKNIL 162 (175)
T ss_dssp EEEECCTTTCTTHHHHHHHHH
T ss_pred eEEEEecCCCcCHHHHHHHHH
Confidence 699999999999999987765
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=7.3e-18 Score=128.58 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=89.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+++|+...-. .+..+ |.........+.. ++....+.+|||+|++
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~--------------~~~~~--t~~~~~~~~~~~~--~~~~~~~~i~d~~g~~ 64 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFD--------------PNINP--TIGASFMTKTVQY--QNELHKFLIWDTAGLE 64 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC--------------TTCCC--CCSEEEEEEEEEE--TTEEEEEEEEEECCSG
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCC--------------ccccc--ccccccccccccc--cccccceeeeecCCch
Confidence 4567999999999999999999763211 11111 1111122222222 4455778899999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
++.......++.+|++|+|+|.+. +|+.+.. ..+..+++.+.++ +
T Consensus 65 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~---~ 141 (167)
T d1z0ja1 65 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH---A 141 (167)
T ss_dssp GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT---C
T ss_pred hhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcC---C
Confidence 999989999999999999999987 7764322 2223334444443 5
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.||+++|..|.
T Consensus 142 ~~~e~SAk~~~nV~e~f~~l~ 162 (167)
T d1z0ja1 142 IFVETSAKNAININELFIEIS 162 (167)
T ss_dssp EEEECBTTTTBSHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHH
Confidence 699999999999999988775
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.9e-18 Score=132.24 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=89.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|..|+|||||+++|+...- ..+..+....+.....+.. ++..+.+.+|||+|++++
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f--------------~~~~~~t~~~~~~~~~i~~----~~~~~~l~i~d~~g~~~~ 65 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDF--------------AENKEPTIGAAFLTQRVTI----NEHTVKFEIWDTAGQERF 65 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--------------CTTCCCCSSEEEEEEEEEE----TTEEEEEEEEEECCSGGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC--------------Cccccccccceeecccccc----ccccccccccccCCchhH
Confidence 5799999999999999999976321 1111222222322223333 456689999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC---C--HHHHHHHHHHHhCCCc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA---N--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~---~--~~~~~~~~~~~~~~~~ 153 (257)
...+...+..+|++++|+|.++ +|+.+. + .....+++.+..+
T Consensus 66 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~--- 142 (170)
T d1ek0a_ 66 ASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKG--- 142 (170)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT---
T ss_pred HHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcC---
Confidence 8888889999999999999998 444221 1 1222333444444
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++++||++|.||+++|+.|.
T Consensus 143 ~~~~e~Sak~g~gV~e~F~~i~ 164 (170)
T d1ek0a_ 143 LLFFETSAKTGENVNDVFLGIG 164 (170)
T ss_dssp CEEEECCTTTCTTHHHHHHHHH
T ss_pred CEEEEecCCCCcCHHHHHHHHH
Confidence 4699999999999999998875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.9e-18 Score=130.12 Aligned_cols=126 Identities=16% Similarity=0.138 Sum_probs=83.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+++|+...- ..+..+ |............ ++....+.+|||+|+.+
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f--------------~~~~~~--t~~~~~~~~~~~~--~~~~~~~~~~d~~g~~~ 64 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKF--------------NDKHIT--TLGASFLTKKLNI--GGKRVNLAIWDTAGQER 64 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCC--------------CSSCCC--CCSCEEEEEEEES--SSCEEEEEEEECCCC--
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCC--------------Cccccc--ccccchheeeecc--CCccceeeeeccCCcce
Confidence 46899999999999999999975221 111111 2222222222222 55668999999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC---HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN---PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~---~~~~~~~~~~~~~~~~~ 154 (257)
+...+...++.+|++++|+|.++ +|+...+ .++ .+++.+.++ +
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e-~~~~a~~~~---~ 140 (167)
T d1z08a1 65 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE-AESYAESVG---A 140 (167)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHH-HHHHHHHTT---C
T ss_pred ecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHH-HHHHHHHcC---C
Confidence 98888889999999999999998 6664322 222 233444444 4
Q ss_pred ceEEecccccccccccccccC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~ 175 (257)
+++++||++|.||+++|+.|.
T Consensus 141 ~~~e~Sak~~~~v~e~F~~l~ 161 (167)
T d1z08a1 141 KHYHTSAKQNKGIEELFLDLC 161 (167)
T ss_dssp EEEEEBTTTTBSHHHHHHHHH
T ss_pred eEEEEecCCCcCHHHHHHHHH
Confidence 699999999999999988765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.71 E-value=1.4e-17 Score=125.27 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=86.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+++|++..-... +.+......... .....+.++|+||...+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~~-----------------~~~~~~~~~~~~------~~~~~~~~~d~~g~~~~~ 58 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVTT-----------------IPTIGFNVETVE------YKNISFTVWDVGGQDKIR 58 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC-----------------CCCSSCCEEEEE------CSSCEEEEEECCCCGGGH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcc-----------------ccceeeEEEEEe------eeeEEEEEecCCCcccch
Confidence 689999999999999999976432110 011111111222 233789999999999999
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHH-HHhCCCccce
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQ-TLFNIDKKSV 156 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~-~~~~~~~~~~ 156 (257)
......+..++++++++|..+ .|+.... ..+...... ..+.....++
T Consensus 59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~ 138 (160)
T d1r8sa_ 59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 138 (160)
T ss_dssp HHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred hhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEE
Confidence 999999999999999999987 4554433 222222222 2223334679
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|+||++++++|.
T Consensus 139 ~~~SAktg~gi~e~~~~l~ 157 (160)
T d1r8sa_ 139 QATCATSGDGLYEGLDWLS 157 (160)
T ss_dssp EECBTTTTBTHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHH
Confidence 9999999999999998775
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=8.8e-18 Score=128.48 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=89.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+++|+...- ..+..+...... ....+.. ......+.+|||||++.
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f--------------~~~~~~t~~~~~--~~~~~~~--~~~~~~~~~~d~~g~~~ 67 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQF--------------HEFQESTIGAAF--LTQTVCL--DDTTVKFEIWDTAGQER 67 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--------------CTTCCCCSSEEE--EEEEEEE--TTEEEEEEEEEECCSGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC--------------Cccccccccccc--ccceeec--cceEEEEEeccCCCchh
Confidence 35899999999999999999975321 111112222222 2222222 44557899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
|...+...++.+|++++|+|..+ +|+.... ..+..+++.+.++ ++
T Consensus 68 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~---~~ 144 (170)
T d1r2qa_ 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNS---LL 144 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT---CE
T ss_pred hhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcC---CE
Confidence 99989999999999999999888 6654322 1233334444333 57
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.||+++++.|.
T Consensus 145 ~~e~SAk~g~~V~e~f~~l~ 164 (170)
T d1r2qa_ 145 FMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998876
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=3e-18 Score=131.66 Aligned_cols=129 Identities=15% Similarity=0.196 Sum_probs=78.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+.+|+++|.+|+|||||+++|++..... ...+ |............ .+.....+.+|||||+++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~--------------~~~~--t~~~~~~~~~~~~-~~~~~~~~~~~d~~g~~~ 64 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQ--------------QYKA--TIGADFLTKEVTV-DGDKVATMQVWDTAGQER 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCT--------------TC-----CCCSCEEEEECC-SSSCCEEEEEECCC----
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCC--------------ccCc--ccccceeeeeeee-cCcccccceeeccCCchh
Confidence 5689999999999999999997632111 0011 1111111111111 133446789999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC---HHHHHHHHHHHhC
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN---PEACEEQLQTLFN 150 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~---~~~~~~~~~~~~~ 150 (257)
+...+...++.+|++++|+|+++ +|+.+.. ..+..+++.+.++
T Consensus 65 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~ 144 (175)
T d1ky3a_ 65 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG 144 (175)
T ss_dssp ------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT
T ss_pred hhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcC
Confidence 99999999999999999999987 6764321 2233344444433
Q ss_pred CCccceEEecccccccccccccccC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+++++||++|.||+++|+.|.
T Consensus 145 --~~~~~e~SA~~g~gv~e~f~~l~ 167 (175)
T d1ky3a_ 145 --DIPLFLTSAKNAINVDTAFEEIA 167 (175)
T ss_dssp --SCCEEEEBTTTTBSHHHHHHHHH
T ss_pred --CCeEEEEeCCCCcCHHHHHHHHH
Confidence 45699999999999999988775
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.4e-17 Score=127.42 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=89.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+++|+... ... ....|+...... .... ++....+.+|||+|+..
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~--f~~--------------~~~~T~~~~~~~-~~~~--~~~~~~l~~~d~~g~~~ 62 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGT--FRE--------------SYIPTVEDTYRQ-VISC--DKSICTLQITDTTGSHQ 62 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCC--CCS--------------SCCCCSCEEEEE-EEEE--TTEEEEEEEEECCSCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCC--CCC--------------ccCcceeecccc-ceee--ccccceecccccccccc
Confidence 3579999999999999999997522 110 011122111111 1111 55667899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc--------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ--------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~--------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
|.......++.+|++++|+|+++ +|+.... ..+..+++.+.++
T Consensus 63 ~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~--- 139 (171)
T d2erxa1 63 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK--- 139 (171)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT---
T ss_pred ccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcC---
Confidence 99999999999999999999997 5653321 1222344444444
Q ss_pred cceEEecccccccccccccccCCC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLDST 177 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~~~ 177 (257)
++++++||++|.||+++|+.|..+
T Consensus 140 ~~~~e~Sak~~~~v~e~f~~l~~~ 163 (171)
T d2erxa1 140 CAFMETSAKLNHNVKELFQELLNL 163 (171)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHT
T ss_pred CeEEEEcCCCCcCHHHHHHHHHHH
Confidence 469999999999999999887743
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.71 E-value=1.5e-17 Score=127.01 Aligned_cols=127 Identities=14% Similarity=0.183 Sum_probs=85.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+++|+...- ... ..+.+.... ...+.. ++....+.+||++|+.
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f--~~~------------~~~T~~~~~-~~~~~~----~~~~~~l~i~d~~g~~ 63 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEF--VED------------YEPTKADSY-RKKVVL----DGEEVQIDILDTAGQE 63 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CSC------------CCTTCCEEE-EEEEEE----TTEEEEEEEEECCC--
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCC--Ccc------------cCCcccccc-cccccc----cccccccccccccccc
Confidence 357899999999999999999975321 110 011111111 111222 5566899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++.......++.+|++++|+|.++ +|+.+.+ ..+..+++.+.++
T Consensus 64 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~--- 140 (168)
T d1u8za_ 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN--- 140 (168)
T ss_dssp -CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT---
T ss_pred chhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcC---
Confidence 999888899999999999999998 5653321 1222233344344
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++++||++|.||+++|+.|.
T Consensus 141 ~~~~e~Sak~g~gv~e~f~~l~ 162 (168)
T d1u8za_ 141 VNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp CEEEECCTTTCTTHHHHHHHHH
T ss_pred CeEEEEcCCCCcCHHHHHHHHH
Confidence 4699999999999999987764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.71 E-value=2.1e-18 Score=133.44 Aligned_cols=129 Identities=16% Similarity=0.109 Sum_probs=86.5
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP 103 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp 103 (257)
...+..+|+++|.+|||||||+++|...... ....|.........+.. ..+.+||+|
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-----------------~~~~t~~~~~~~~~~~~------~~~~i~D~~ 69 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQIGEVV-----------------TTKPTIGFNVETLSYKN------LKLNVWDLG 69 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-----------------EECSSTTCCEEEEEETT------EEEEEEEEC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCC-----------------ccccccceEEEEEeeCC------EEEEEEecc
Confidence 4566789999999999999999998431110 11122222233333433 789999999
Q ss_pred CCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHHH-HhC
Q psy12244 104 GHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQT-LFN 150 (257)
Q Consensus 104 G~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~~-~~~ 150 (257)
|+..|...+...+..+|++++|+|+++ +|+... +.+++.+.+.. .+.
T Consensus 70 g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~ 149 (182)
T d1moza_ 70 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK 149 (182)
T ss_dssp ----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCC
T ss_pred cccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHh
Confidence 999998888889999999999999987 676543 23333333221 112
Q ss_pred CCccceEEecccccccccccccccC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
....+++++||++|+||++++++|.
T Consensus 150 ~~~~~~~e~SA~~g~gv~e~~~~l~ 174 (182)
T d1moza_ 150 DRSWSIVASSAIKGEGITEGLDWLI 174 (182)
T ss_dssp SSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred hCCCEEEEEECCCCCCHHHHHHHHH
Confidence 2235689999999999999988775
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.1e-17 Score=124.21 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=89.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|||||||+++|++..-. .+....+.... .. .... .+....+.+||++|+..+
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~~--------------~~~~~~~~~~~--~~-~~~~--~~~~~~l~~~d~~~~~~~ 64 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHFV--------------DEYDPTIEDSY--RK-QVVI--DGETCLLDILDTAGQEEY 64 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCC--------------CSCCCCSEEEE--EE-EEEE--TTEEEEEEEEEECCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--------------CccCCccceee--cc-ceee--eceeeeeeeeeccCcccc
Confidence 67999999999999999999763211 01111122211 11 1111 455688999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHhCCCccce
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLFNIDKKSV 156 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~~~~~~~~ 156 (257)
.......++.+|++++|+|.++ +|+.... ..+..+++.+.++ +++
T Consensus 65 ~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 141 (166)
T d1ctqa_ 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYG---IPY 141 (166)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHT---CCE
T ss_pred ccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhC---CeE
Confidence 9999999999999999999998 6764433 1233344444444 469
Q ss_pred EEecccccccccccccccC
Q psy12244 157 LRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 157 i~iSa~~g~gi~~l~~~i~ 175 (257)
+++||++|.||+++|..|.
T Consensus 142 ~e~Sak~g~gi~e~f~~i~ 160 (166)
T d1ctqa_ 142 IETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EECCTTTCTTHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHH
Confidence 9999999999999987765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=8.3e-18 Score=130.45 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=89.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc------cCCccEEEEEe
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI------LDGEEYLLNLI 100 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~------~~~~~~~~~li 100 (257)
...+|+++|.+|+|||||+++|++..- ........+.+.....+.+... .......+.+|
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 69 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKF--------------NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLW 69 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC--------------CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCC--------------CCccCCcccceeeEEEEEEecccccccccccceEEeccc
Confidence 357899999999999999999964221 0011111222222222222210 01223679999
Q ss_pred CCCCCcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHH
Q psy12244 101 DTPGHVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQT 147 (257)
Q Consensus 101 DtpG~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~ 147 (257)
||||+++|...+...++.+|++|+|+|+++ +|+.... ..+...++.+
T Consensus 70 dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~ 149 (186)
T d2f7sa1 70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD 149 (186)
T ss_dssp EEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHH
Confidence 999999999999999999999999999998 5553221 1122234444
Q ss_pred HhCCCccceEEecccccccccccccccCC
Q psy12244 148 LFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 148 ~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
.++ ++++++||++|.||+++++.|..
T Consensus 150 ~~~---~~~~e~Sak~~~~i~e~f~~l~~ 175 (186)
T d2f7sa1 150 KYG---IPYFETSAATGQNVEKAVETLLD 175 (186)
T ss_dssp HTT---CCEEEEBTTTTBTHHHHHHHHHH
T ss_pred HcC---CEEEEEeCCCCCCHHHHHHHHHH
Confidence 444 46999999999999999987763
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.5e-18 Score=132.93 Aligned_cols=127 Identities=16% Similarity=0.208 Sum_probs=88.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+++|||||+++|+... +..+.. .|+........+.. ++....+.+|||||+..+
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~--------------f~~~~~--~Ti~~~~~~~~~~~--~~~~~~l~i~D~~g~~~~ 65 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGE--------------FEKKYV--ATLGVEVHPLVFHT--NRGPIKFNVWDTAGQEKF 65 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-------------------CCEE--EETTEEEEEEEECB--TTCCEEEEEEECTTHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--------------CCcccc--cceecccccccccc--cccccccccccccccccc
Confidence 579999999999999999985421 111111 22222222233333 566789999999999998
Q ss_pred HHHHHHhhhhcceEEEEEecCc-----------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEe
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ-----------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRI 159 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~-----------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 159 (257)
...+...++.+|++++|+|+++ +|+......... .........+++++
T Consensus 66 ~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~---~~~~~~~~~~~~e~ 142 (170)
T d1i2ma_ 66 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS---IVFHRKKNLQYYDI 142 (170)
T ss_dssp SSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTS---HHHHSSCSSEEEEE
T ss_pred ceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHH---HHHHHHcCCEEEEE
Confidence 8888888999999999999988 777544321111 11222334679999
Q ss_pred cccccccccccccccCC
Q psy12244 160 WHRRCFSCADCHRSLDS 176 (257)
Q Consensus 160 Sa~~g~gi~~l~~~i~~ 176 (257)
||++|.||+++++.|.+
T Consensus 143 Sak~~~~v~e~f~~l~~ 159 (170)
T d1i2ma_ 143 SAKSNYNFEKPFLWLAR 159 (170)
T ss_dssp BTTTTBTTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHH
Confidence 99999999999988763
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.1e-17 Score=128.34 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=88.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+++|++..-. .+.....+.......... .+....+.+||++|+..
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~i~d~~g~~~ 64 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMVNI----DGKQIKLQIWDTAGQES 64 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC--------------C-----CCSSEEEEEEEE----TTEEEEEEEECCTTGGG
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCC--------------CCcccceeeccceeeeee----eeeEEEEEeecccCccc
Confidence 468999999999999999999763211 111222222222222222 34557899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCC--CHHHHHHHHHHHhCCCccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNA--NPEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~--~~~~~~~~~~~~~~~~~~~ 155 (257)
+...+...+..+|++++|+|.++ +|+... ...+....+.+..+ .+
T Consensus 65 ~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~---~~ 141 (173)
T d2a5ja1 65 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG---LI 141 (173)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT---CE
T ss_pred hhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcC---CE
Confidence 98888899999999999999988 665332 12333334444444 46
Q ss_pred eEEecccccccccccccccC
Q psy12244 156 VLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++||++|.||++++..|.
T Consensus 142 ~~e~Sa~tg~~V~e~f~~i~ 161 (173)
T d2a5ja1 142 FMETSAKTACNVEEAFINTA 161 (173)
T ss_dssp EEEECTTTCTTHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHH
Confidence 99999999999999987775
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.4e-17 Score=125.60 Aligned_cols=127 Identities=16% Similarity=0.188 Sum_probs=88.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+++|+...-. . +..+.+. +........ ++....+.+||++|+.
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~--~------------~~~~t~~-~~~~~~~~~----~~~~~~l~~~d~~g~~ 62 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFI--E------------KYDPTIE-DFYRKEIEV----DSSPSVLEILDTAGTE 62 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC--S------------CCCTTCC-EEEEEEEEE----TTEEEEEEEEECCCTT
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCC--C------------ccCCcee-eeeeeeeec----CcceEeeccccCCCcc
Confidence 3568999999999999999999763211 0 0011111 111111111 4556889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
.+.......++.+|++++|+|.++ +|+.... .....+.+.+.++
T Consensus 63 ~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~--- 139 (167)
T d1kaoa_ 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG--- 139 (167)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT---
T ss_pred ccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcC---
Confidence 999999999999999999999997 6653321 1222333444444
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++++||++|.||+++|+.|.
T Consensus 140 ~~~~e~Sak~g~~i~e~f~~i~ 161 (167)
T d1kaoa_ 140 CPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp SCEEEECTTCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcCHHHHHHHHH
Confidence 4699999999999999988765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.2e-17 Score=127.43 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=88.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|+|||||+++|+...- ..+..+.+... . ...... ++....+.+||++|+.
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f--------------~~~~~~t~~~~--~-~~~~~~--~~~~~~~~~~d~~g~~ 62 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIF--------------VEKYDPTIEDS--Y-RKQVEV--DCQQCMLEILDTAGTE 62 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC--------------CCSCCCCSEEE--E-EEEEES--SSCEEEEEEEEECSSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC--------------CCccCCccccc--c-ceeEEe--eeeEEEeccccccCcc
Confidence 346799999999999999999976321 11111111111 1 111122 5566899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
.+...+..+++.+|++++|+|+++ +|+.... ..+....+.+.+ ..
T Consensus 63 ~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~--~~ 140 (167)
T d1c1ya_ 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW--CN 140 (167)
T ss_dssp SSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--TS
T ss_pred cccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHh--CC
Confidence 999999999999999999999998 6664322 122222333222 34
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.||+++|+.|.
T Consensus 141 ~~~~e~Sak~g~gv~e~F~~l~ 162 (167)
T d1c1ya_ 141 CAFLESSAKSKINVNEIFYDLV 162 (167)
T ss_dssp CEEEECBTTTTBSHHHHHHHHH
T ss_pred CEEEEEcCCCCcCHHHHHHHHH
Confidence 5799999999999999988765
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=2.3e-17 Score=126.14 Aligned_cols=125 Identities=16% Similarity=0.256 Sum_probs=79.5
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc--
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-- 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-- 107 (257)
+|+++|++|||||||+|+|++...... +...+.|.......+.... ..+.++||||...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~------~~~~~~d~~g~~~~~ 62 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIV-------------EDEEGVTRDPVQDTVEWYG------KTFKLVDTCGVFDNP 62 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------------------CCSEEEEEETT------EEEEEEECTTTTSSG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccee-------------cccCceeeccccccccccc------cccccccccceeeee
Confidence 689999999999999999976433221 2233445544444454444 7899999999633
Q ss_pred -------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCCCCHHHHHHHHHHHhCCCcc
Q psy12244 108 -------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKNANPEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 -------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
+...+...+..+|++++++|++. +|+.+. ...+...+.......
T Consensus 63 ~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~---~~~~~~~~~~~~~~~ 139 (171)
T d1mkya1 63 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE---FEREVKPELYSLGFG 139 (171)
T ss_dssp GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH---HHHHTHHHHGGGSSC
T ss_pred ccccccccccccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhh---hhhHHHHHHHhcCCC
Confidence 33445566788999999999986 555321 111112222333344
Q ss_pred ceEEecccccccccccccccCC
Q psy12244 155 SVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 155 ~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+++++||++|.|+++|+++|..
T Consensus 140 ~~i~iSAk~g~gid~L~~~i~~ 161 (171)
T d1mkya1 140 EPIPVSAEHNINLDTMLETIIK 161 (171)
T ss_dssp SCEECBTTTTBSHHHHHHHHHH
T ss_pred CeEEEecCCCCCHHHHHHHHHH
Confidence 6899999999999999988873
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=8.4e-18 Score=128.20 Aligned_cols=128 Identities=21% Similarity=0.260 Sum_probs=89.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+.++|+++|..|+|||||+++|++..-. . +..+.+..+. ...+.. ++..+.+.+|||+|.
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~--~------------~~~~t~~~~~-~~~~~~----~~~~~~l~i~d~~g~ 62 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFV--D------------SYDPTIENTF-TKLITV----NGQEYHLQLVDTAGQ 62 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCC--S------------CCCSSCCEEE-EEEEEE----TTEEEEEEEEECCCC
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCC--c------------ccCcceeccc-ceEEec----CcEEEEeeecccccc
Confidence 45678999999999999999999763211 0 0111111111 112222 566789999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~ 152 (257)
..|.......+..+|++++|+|.++ +|+...+ ..+..+++.+.++
T Consensus 63 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~-- 140 (167)
T d1xtqa1 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWN-- 140 (167)
T ss_dssp CTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT--
T ss_pred cccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcC--
Confidence 9987777788899999999999998 6764321 1222234444444
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++++||++|.||+++|+.|.
T Consensus 141 -~~~~e~Sak~~~~v~~~f~~li 162 (167)
T d1xtqa1 141 -AAFLESSAKENQTAVDVFRRII 162 (167)
T ss_dssp -CEEEECCTTCHHHHHHHHHHHH
T ss_pred -CEEEEEecCCCCCHHHHHHHHH
Confidence 4689999999999999987664
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.8e-17 Score=126.41 Aligned_cols=127 Identities=14% Similarity=0.085 Sum_probs=86.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+++|..++|||||+++|+...-. . ... .|+.. ........ ++....+.+|||+|++.|
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~--~------------~~~--~t~~~-~~~~~~~~--~~~~~~l~i~D~~g~~~~ 63 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFP--E------------VYV--PTVFE-NYVADIEV--DGKQVELALWDTAGLEDY 63 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC--S------------SCC--CCSEE-EEEEEEEE--TTEEEEEEEEEECCSGGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC--C------------CcC--Cceee-eccccccc--cccceeeeccccCccchh
Confidence 57999999999999999999763211 0 001 12111 11111111 455688999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHHHHH
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EACEEQ 144 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~~~~ 144 (257)
...+..+++.+|++|+|+|.++ +|+...+. .+...+
T Consensus 64 ~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~ 143 (177)
T d1kmqa_ 64 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 143 (177)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred cccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHH
Confidence 9988899999999999999997 66643221 011112
Q ss_pred HHHHhCCCccceEEecccccccccccccccCC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.+.+ ...+++++||++|.||+++|+.+.+
T Consensus 144 ~a~~~--~~~~~~E~SAkt~~gi~e~F~~i~~ 173 (177)
T d1kmqa_ 144 MANRI--GAFGYMECSAKTKDGVREVFEMATR 173 (177)
T ss_dssp HHHHT--TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHc--CCcEEEEecCCCCcCHHHHHHHHHH
Confidence 22222 2346899999999999999887653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=8.1e-17 Score=123.14 Aligned_cols=127 Identities=14% Similarity=0.203 Sum_probs=86.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+++|||||+++|+...-. .. ..+. ..+.....+.. ++..+.+.+||++|+.
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~--~~------------~~~t-~~~~~~~~~~~----~~~~~~~~~~d~~g~~ 64 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFV--TD------------YDPT-IEDSYTKQCVI----DDRAARLDILDTAGQE 64 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCC--SS------------CCTT-CCEEEEEEEEE----TTEEEEEEEEECC---
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC--cc------------cCcc-cccceeeeeee----cccccccccccccccc
Confidence 3468999999999999999999763211 00 0111 11111222222 4566899999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~ 153 (257)
++.......++.+|++++|+|.++ +|+.... ..+..+++.+.++
T Consensus 65 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~--- 141 (171)
T d2erya1 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLK--- 141 (171)
T ss_dssp -CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTT---
T ss_pred cccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcC---
Confidence 999999999999999999999987 6764432 2223334444444
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++++||++|.||+++|+.|.
T Consensus 142 ~~~~e~Sak~~~~i~e~f~~l~ 163 (171)
T d2erya1 142 VTYMEASAKIRMNVDQAFHELV 163 (171)
T ss_dssp CEEEECBTTTTBSHHHHHHHHH
T ss_pred CEEEEEcCCCCcCHHHHHHHHH
Confidence 4699999999999999998775
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.5e-17 Score=125.83 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=81.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|++|||||||+|+|++........ ..+.+.......+.+.+ ..+.++|+||..+.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~------~~~~~~d~~g~~~~ 62 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTD-------------IAGTTRDVLREHIHIDG------MPLHIIDTAGLREA 62 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCS-------------STTCCCSCEEEEEEETT------EEEEEEECCCCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeec-------------ccccccceEeeeeeccC------ceeeeccccccccc
Confidence 479999999999999999998654332221 23344443344455544 78899999997652
Q ss_pred --------HHHHHHhhhhcceEEEEEecCccCCCCCCHHHHHHHHHHHh----------------------CCCccceEE
Q psy12244 109 --------SNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQLQTLF----------------------NIDKKSVLR 158 (257)
Q Consensus 109 --------~~~~~~~~~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~----------------------~~~~~~~i~ 158 (257)
......++..+|++++++|+..-+... ..+...+.++... .....++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~ 141 (161)
T d2gj8a1 63 SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIR 141 (161)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEE
T ss_pred cccchhHHHHHHHHHHHhccccceeeccccccchh-hhhhhhhhhhhcccccceeeccchhhhhhhHHHHHHhCCCcEEE
Confidence 233445678899999999988622110 0111111111100 112347999
Q ss_pred ecccccccccccccccC
Q psy12244 159 IWHRRCFSCADCHRSLD 175 (257)
Q Consensus 159 iSa~~g~gi~~l~~~i~ 175 (257)
+||++|.||++|+++|.
T Consensus 142 iSAk~~~gi~~L~~~l~ 158 (161)
T d2gj8a1 142 LSARTGEGVDVLRNHLK 158 (161)
T ss_dssp CCTTTCTTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 99999999999988775
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=4.3e-17 Score=125.86 Aligned_cols=121 Identities=19% Similarity=0.195 Sum_probs=80.0
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc--
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD-- 107 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-- 107 (257)
.|+++|++|+|||||+|+|++..... +..+|.|.+. ..+.+. .+.|+||||+..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~--------------~~~~g~T~~~--~~~~~~--------~~~ivDtpG~~~~~ 57 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRR--------------GKRPGVTRKI--IEIEWK--------NHKIIDMPGFGFMM 57 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSS--------------SSSTTCTTSC--EEEEET--------TEEEEECCCBSCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee--------------eCCCCEeecc--cccccc--------cceecccCCceecc
Confidence 58999999999999999997643211 1234455442 223332 356899999632
Q ss_pred -------------cHHHHHHhhhhcceEEEEEecCc-------------------------------------cCCCCCC
Q psy12244 108 -------------FSNEVTRSLAACQGVVLLIDANQ-------------------------------------VDLKNAN 137 (257)
Q Consensus 108 -------------~~~~~~~~~~~aD~~ilVvd~~~-------------------------------------~D~~~~~ 137 (257)
+.......++.+|++++|+|+.. +|+.+ +
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~-~ 136 (184)
T d2cxxa1 58 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK-N 136 (184)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS-C
T ss_pred ccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhh-h
Confidence 22234455678999999999863 66543 3
Q ss_pred HHHHHHHHHHHhCCC----ccceEEecccccccccccccccC
Q psy12244 138 PEACEEQLQTLFNID----KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~----~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+...+.+.+.+... ..+++++||++|.|+++|++.|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~ 178 (184)
T d2cxxa1 137 VQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 178 (184)
T ss_dssp HHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHH
Confidence 344444444444322 23589999999999999988775
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=1.3e-16 Score=121.79 Aligned_cols=126 Identities=15% Similarity=0.206 Sum_probs=88.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|..++|||||++++++..-. .+..+...... ...+.+ ++....+.+||++|++.
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~--------------~~~~~t~~~~~-~~~~~~----~~~~~~~~i~d~~g~~~ 64 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFV--------------PDYDPTIEDSY-LKHTEI----DNQWAILDVLDTAGQEE 64 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--------------TTCCTTCCEEE-EEEEEE----TTEEEEEEEEECCSCGG
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC--------------cccCcceeecc-cccccc----ccccccccccccccccc
Confidence 478999999999999999999763211 01111111111 111222 45668999999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCcc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKK 154 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~ 154 (257)
+.......++.+|++++|+|.++ +|+...+ ..+..+++.+.++ +
T Consensus 65 ~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~---~ 141 (169)
T d1x1ra1 65 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN---I 141 (169)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT---C
T ss_pred cccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcC---C
Confidence 98888889999999999999998 7775442 1222334445455 4
Q ss_pred ceEEecccccc-cccccccccC
Q psy12244 155 SVLRIWHRRCF-SCADCHRSLD 175 (257)
Q Consensus 155 ~~i~iSa~~g~-gi~~l~~~i~ 175 (257)
+++++||++|. ||+++|+.|.
T Consensus 142 ~~~e~Sak~~~~nV~~~F~~l~ 163 (169)
T d1x1ra1 142 PYIETSAKDPPLNVDKTFHDLV 163 (169)
T ss_dssp CEEEEBCSSSCBSHHHHHHHHH
T ss_pred EEEEEcCCCCCcCHHHHHHHHH
Confidence 69999999986 9999988765
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.8e-16 Score=120.36 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=88.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
..+.+|+++|.+|+|||||+++|++..-. .+....+........... .+....+.+||++|.
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~----~~~~~~~~i~d~~g~ 65 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFD--------------TQLFHTIGVEFLNKDLEV----DGHFVTMQIWDTAGQ 65 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCC--------------C----CCSEEEEEEEEEE----TTEEEEEEEEECCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC--------------Cccccceeeeeeeeeeee----cCceeeEeeecccCc
Confidence 35678999999999999999999763211 111122222211222222 455688999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC--HHHHHHHHHHHh
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN--PEACEEQLQTLF 149 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~--~~~~~~~~~~~~ 149 (257)
.++.......+..+|++++++|.+. +|+.+.. .++.. ++.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~-~~~~~- 143 (174)
T d1wmsa_ 66 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ-AWCRD- 143 (174)
T ss_dssp GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHH-HHHHH-
T ss_pred ceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHH-HHHHH-
Confidence 9999889999999999999999997 6664322 23332 23322
Q ss_pred CCCccceEEecccccccccccccccC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
....+++++||++|.||+++|+.|.
T Consensus 144 -~~~~~~~e~Sak~~~gI~e~f~~l~ 168 (174)
T d1wmsa_ 144 -NGDYPYFETSAKDATNVAAAFEEAV 168 (174)
T ss_dssp -TTCCCEEECCTTTCTTHHHHHHHHH
T ss_pred -cCCCeEEEEcCCCCcCHHHHHHHHH
Confidence 2235699999999999999987765
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.1e-17 Score=126.10 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=86.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|.+|+|||||+++|+...-. .+..+ |+..... ..... ++..+.+.+|||+|+++
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~--------------~~~~~--t~~~~~~-~~~~~--~~~~~~l~i~D~~g~~~ 63 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFP--------------SEYVP--TVFDNYA-VTVMI--GGEPYTLGLFDTAGQED 63 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--------------SSCCC--CSEEEEE-EEEEE--TTEEEEEEEEEECCSGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCC--------------CCcCC--ceeeecc-eeEee--CCceeeeeccccccchh
Confidence 357999999999999999999763211 11111 2221111 11111 45567899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHHHH
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EACEE 143 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~~~ 143 (257)
|......+++.+|++++|+|.++ +|+.+... .+..+
T Consensus 64 ~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 143 (191)
T d2ngra_ 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAE 143 (191)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred hhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHH
Confidence 99888999999999999999997 56532210 11111
Q ss_pred HHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 144 QLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 144 ~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
++.+. ....+++++||++|.||+++|+.+..
T Consensus 144 ~~~~~--~~~~~~~e~SAk~~~~V~e~f~~l~~ 174 (191)
T d2ngra_ 144 KLARD--LKAVKYVECSALTQKGLKNVFDEAIL 174 (191)
T ss_dssp HHHHH--TTCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHH--cCCCeEEEEeCCCCcCHHHHHHHHHH
Confidence 22222 23356999999999999999887764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.66 E-value=2.8e-17 Score=127.25 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=84.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc-
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD- 107 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~- 107 (257)
.+|+|+|++|||||||+|+|++....+.. ..+.|.........+.. ...+.+|||||+.+
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~--------------~~~~T~~~~~~~~~~~~-----~~~~~~~DtpG~~~~ 62 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIAD--------------YHFTTLVPNLGMVETDD-----GRSFVMADLPGLIEG 62 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESS--------------TTSSCCCCCEEEEECSS-----SCEEEEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCceec--------------CCCceEeeeeceeEecC-----CcEEEEecCCCcccC
Confidence 46999999999999999999664433221 23344444444444322 15788999999632
Q ss_pred ------cHHHHHHhhhhcceEEEEEecCc-----------------------------------cCCCCCCHHHHHHHHH
Q psy12244 108 ------FSNEVTRSLAACQGVVLLIDANQ-----------------------------------VDLKNANPEACEEQLQ 146 (257)
Q Consensus 108 ------~~~~~~~~~~~aD~~ilVvd~~~-----------------------------------~D~~~~~~~~~~~~~~ 146 (257)
........+..++.++++++... +|+.+ ..+..+.+.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~--~~~~~~~~~ 140 (185)
T d1lnza2 63 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE--AAENLEAFK 140 (185)
T ss_dssp TTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT--HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHh--HHHHHHHHH
Confidence 33455666778899888887664 44432 233445555
Q ss_pred HHhCCCccceEEecccccccccccccccCC
Q psy12244 147 TLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 147 ~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+.++ ...++|++||++|.|+++|++.|..
T Consensus 141 ~~~~-~~~~v~~iSA~~g~Gi~~L~~~i~~ 169 (185)
T d1lnza2 141 EKLT-DDYPVFPISAVTREGLRELLFEVAN 169 (185)
T ss_dssp HHCC-SCCCBCCCSSCCSSTTHHHHHHHHH
T ss_pred HHhc-cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5554 3467999999999999999888863
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.5e-16 Score=121.36 Aligned_cols=124 Identities=20% Similarity=0.185 Sum_probs=84.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|.+|+|||||+++|+...-. .+..+.+..+ +... ... ++..+.+.+|||+|+..+
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~f~--------------~~~~pTi~~~--~~~~-~~~--~~~~~~l~i~D~~g~~~~ 63 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKRFI--------------WEYDPTLEST--YRHQ-ATI--DDEVVSMEILDTAGQEDT 63 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--------------SCCCTTCCEE--EEEE-EEE--TTEEEEEEEEECCCCCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--------------CccCCceecc--cccc-ccc--cccceEEEEeeccccccc
Confidence 46999999999999999999863210 0111112222 1111 111 556689999999999887
Q ss_pred HHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCCccc
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNIDKKS 155 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~~~~ 155 (257)
. .....++.+|++++|+|.++ +|+.... ..+..+++.+.++ ++
T Consensus 64 ~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~---~~ 139 (168)
T d2atva1 64 I-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELA---CA 139 (168)
T ss_dssp H-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT---SE
T ss_pred c-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhC---Ce
Confidence 4 55668889999999999998 6764321 1222234444444 46
Q ss_pred eEEecccccc-cccccccccC
Q psy12244 156 VLRIWHRRCF-SCADCHRSLD 175 (257)
Q Consensus 156 ~i~iSa~~g~-gi~~l~~~i~ 175 (257)
++++||++|. ||+++|..|.
T Consensus 140 ~~e~Saktg~gnV~e~F~~l~ 160 (168)
T d2atva1 140 FYECSACTGEGNITEIFYELC 160 (168)
T ss_dssp EEECCTTTCTTCHHHHHHHHH
T ss_pred EEEEccccCCcCHHHHHHHHH
Confidence 9999999998 5999987665
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.65 E-value=1.1e-16 Score=124.84 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=85.1
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEe
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLI 100 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~li 100 (257)
+++|....++|+|+|++|||||||+|+|++...... .....+.|...... .. . ..+.++
T Consensus 16 ~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~------------~~~~~~~t~~~~~~--~~-~------~~~~~~ 74 (195)
T d1svia_ 16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLAR------------TSSKPGKTQTLNFY--II-N------DELHFV 74 (195)
T ss_dssp GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------------------CCEEEE--EE-T------TTEEEE
T ss_pred hHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEE------------eecccceeeecccc--cc-c------ccceEE
Confidence 467777788999999999999999999976322110 01112222221111 11 1 234567
Q ss_pred CCCCCcc-------------cHHHHHHhhhhcceEEEEEecCc--------------------------cCCCC-CCHHH
Q psy12244 101 DTPGHVD-------------FSNEVTRSLAACQGVVLLIDANQ--------------------------VDLKN-ANPEA 140 (257)
Q Consensus 101 DtpG~~~-------------~~~~~~~~~~~aD~~ilVvd~~~--------------------------~D~~~-~~~~~ 140 (257)
|++|... +.......+..+|++++|+|+.. +|+.. .+..+
T Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~ 154 (195)
T d1svia_ 75 DVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDK 154 (195)
T ss_dssp ECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHH
T ss_pred EEEeeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHH
Confidence 7777422 23344456677899999999976 77643 34556
Q ss_pred HHHHHHHHhCC-CccceEEecccccccccccccccC
Q psy12244 141 CEEQLQTLFNI-DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 141 ~~~~~~~~~~~-~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+.+++.+.. ...+++++||++|.|+++|+++|.
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~ 190 (195)
T d1svia_ 155 HAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIK 190 (195)
T ss_dssp HHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 66667666654 345789999999999999988876
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=2e-16 Score=122.30 Aligned_cols=129 Identities=13% Similarity=0.181 Sum_probs=88.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
+.+|+++|.+|+|||||+++|++..-. .+.. .|.........+.. .+....+.+|||||+..
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~--------------~~~~--~t~~~~~~~~~~~~--~~~~~~~~~~d~~g~~~ 63 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYK--ATIGADFLTKEVMV--DDRLVTMQIWDTAGQER 63 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--------------SSCC--CCCSEEEEEEEEES--SSCEEEEEEEEECSSGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCC--------------CCcC--Cccceeeeeeeeee--CCceEEEEeeecCCccc
Confidence 468999999999999999999763211 0111 12222222222222 45567899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc----------------------------------cCCCCCC-HHHHHHHHHHHhCCC
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ----------------------------------VDLKNAN-PEACEEQLQTLFNID 152 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~----------------------------------~D~~~~~-~~~~~~~~~~~~~~~ 152 (257)
+...+...+..+|++++|+|.++ +|+.+.. ..+..+.+... ..
T Consensus 64 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~--~~ 141 (184)
T d1vg8a_ 64 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS--KN 141 (184)
T ss_dssp GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH--TT
T ss_pred ccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHH--hc
Confidence 88888888999999999999987 7764432 12222222221 23
Q ss_pred ccceEEecccccccccccccccCC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
..+++++||++|.||+++++.|.+
T Consensus 142 ~~~~~e~Sak~~~gI~e~f~~l~~ 165 (184)
T d1vg8a_ 142 NIPYFETSAKEAINVEQAFQTIAR 165 (184)
T ss_dssp SCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCeEEEEcCCCCcCHHHHHHHHHH
Confidence 467999999999999999988753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.4e-16 Score=120.32 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=86.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|.+|+|||||+++|+...-. .. ..+ |+.. ........ ++....+.+||++|+
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~--~~------------~~~--ti~~-~~~~~~~~--~~~~~~~~~~d~~g~ 63 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFP--GE------------YIP--TVFD-NYSANVMV--DGKPVNLGLWDTAGQ 63 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SS------------CCC--CSCC-EEEEEEEE--TTEEEEEEEECCCCS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCC--cc------------ccc--ceee-ceeeeeec--cCcceEEEeeccccc
Confidence 35678999999999999999999763211 10 011 1111 11111111 456688999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHH
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EAC 141 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~ 141 (257)
+.|......+++.+|++++|+|+++ +|+.+... ...
T Consensus 64 ~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~ 143 (183)
T d1mh1a_ 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 143 (183)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred ccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHH
Confidence 9999888889999999999999997 34322100 000
Q ss_pred HHHHHHHhCCCccceEEecccccccccccccccCC
Q psy12244 142 EEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
...+.+. ....+++++||++|.||+++|+.|.+
T Consensus 144 ~~~~a~~--~~~~~~~E~SAk~~~~V~e~F~~l~~ 176 (183)
T d1mh1a_ 144 GLAMAKE--IGAVKYLECSALTQRGLKTVFDEAIR 176 (183)
T ss_dssp HHHHHHH--TTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHH--cCCceEEEcCCCCCcCHHHHHHHHHH
Confidence 0111111 23357999999999999999887764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.63 E-value=4.9e-16 Score=118.98 Aligned_cols=127 Identities=10% Similarity=0.056 Sum_probs=85.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|.+|||||||+++|.+..-.... .+............ ..+.++|++|+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-----------------~~~~~~~~~~~~~~------~~~~~~d~~~~ 69 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-----------------PTIGSNVEEIVINN------TRFLMWDIGGQ 69 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-----------------CCSCSSCEEEEETT------EEEEEEECCC-
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-----------------cccceeEEEEeecc------eEEEEeccccc
Confidence 45578999999999999999999763321100 11111112222222 78999999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCCH-HHHHHHHHHH-hCCC
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNANP-EACEEQLQTL-FNID 152 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~~-~~~~~~~~~~-~~~~ 152 (257)
..+.......+..++++++|+|.++ +|+..... .+..+.+... ....
T Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~ 149 (177)
T d1zj6a1 70 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDH 149 (177)
T ss_dssp ---CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSS
T ss_pred cccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhc
Confidence 9888888888899999999999987 67755442 3333333221 1333
Q ss_pred ccceEEecccccccccccccccC
Q psy12244 153 KKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 153 ~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
..+++++||++|+|+++++++|.
T Consensus 150 ~~~~~~~Sa~tg~Gi~e~~~~L~ 172 (177)
T d1zj6a1 150 QWHIQACCALTGEGLCQGLEWMM 172 (177)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHH
Confidence 46799999999999999988775
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.1e-15 Score=117.24 Aligned_cols=121 Identities=15% Similarity=0.208 Sum_probs=79.6
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|..++|||||+++++...-... ....... ....+.. ++..+.+.+|||+|+..
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~---------------~~t~~~~-~~~~i~v----~~~~~~l~i~Dt~g~~~ 64 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVL---------------EKTESEQ-YKKEMLV----DGQTHLVLIREEAGAPD 64 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCCC---------------CCSSCEE-EEEEEEE----TTEEEEEEEEECSSCCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCc---------------CCcccee-EEEEeec----CceEEEEEEeecccccc
Confidence 47899999999999999999976432110 0111111 1111222 56668999999999987
Q ss_pred cHHHHHHhhhhcceEEEEEecCc---------------------------------cCC--CCCC--HHHHHHHHHHHhC
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ---------------------------------VDL--KNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~---------------------------------~D~--~~~~--~~~~~~~~~~~~~ 150 (257)
+. +++.+|++|+|+|.++ .|+ .... .....+.+.. .
T Consensus 65 ~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~--~ 137 (175)
T d2bmja1 65 AK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA--D 137 (175)
T ss_dssp HH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH--T
T ss_pred cc-----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH--H
Confidence 54 5788999999999997 232 2111 1111222211 2
Q ss_pred CCccceEEecccccccccccccccC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
...++++++||++|.|++++|..+.
T Consensus 138 ~~~~~~~e~SAk~~~~v~~~F~~l~ 162 (175)
T d2bmja1 138 MKRCSYYETCATYGLNVDRVFQEVA 162 (175)
T ss_dssp STTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred hCCCeEEEeCCCCCcCHHHHHHHHH
Confidence 3456799999999999999987665
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=5.7e-16 Score=116.53 Aligned_cols=123 Identities=18% Similarity=0.165 Sum_probs=85.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcccH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDFS 109 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 109 (257)
+|+++|++|+|||||+|+|++..... .+.|.........+.. ..+.++|++|...+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~-----------------~~~t~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 58 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLAT-----------------LQPTWHPTSEELAIGN------IKFTTFDLGGHIQAR 58 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCC-----------------CCCCCSCEEEEECCTT------CCEEEEECCCSGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCe-----------------eeceeeEeEEEeccCC------eeEEEEeeccchhhh
Confidence 68999999999999999997743221 1122222222233322 678899999999988
Q ss_pred HHHHHhhhhcceEEEEEecCc-------------------------------cCCCCC-CHHHHHHHHHHH-------h-
Q psy12244 110 NEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNA-NPEACEEQLQTL-------F- 149 (257)
Q Consensus 110 ~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~-~~~~~~~~~~~~-------~- 149 (257)
......+..++++++++|..+ .|+... ...+..+.+... +
T Consensus 59 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~ 138 (166)
T d2qtvb1 59 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE 138 (166)
T ss_dssp GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CC
T ss_pred hhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhc
Confidence 888888899999999999987 555433 233333332110 1
Q ss_pred CCCccceEEecccccccccccccccC
Q psy12244 150 NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 ~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
....++++++||++|+||++++++|.
T Consensus 139 ~~~~~~~~~~SA~tg~Gv~e~~~~l~ 164 (166)
T d2qtvb1 139 GQRPVEVFMCSVVMRNGYLEAFQWLS 164 (166)
T ss_dssp SSCCEEEEEEBTTTTBSHHHHHHHHT
T ss_pred ccCCCEEEEeeCCCCCCHHHHHHHHh
Confidence 12234689999999999999999876
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=1.6e-15 Score=114.90 Aligned_cols=127 Identities=21% Similarity=0.277 Sum_probs=82.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
|+.+|+++|..|+|||||+++|+...-.. +..+............+ ......+.+||++|..
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 62 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD--------------RTEATIGVDFRERAVDI----DGERIKIQLWDTAGQE 62 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS--------------SCCCCCSCCEEEEEEEE----TTEEEEEEEEECCCSH
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCC--------------ccCcccccccceeeeee----eccceEEEEEeccCch
Confidence 46789999999999999999997632111 01111111111111212 3445789999999998
Q ss_pred ccHHH-HHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCCC
Q psy12244 107 DFSNE-VTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNID 152 (257)
Q Consensus 107 ~~~~~-~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~~ 152 (257)
.+... +...++.+|++++|+|.++ +|+.+.. ..+..+++.+.++
T Consensus 63 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~-- 140 (165)
T d1z06a1 63 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-- 140 (165)
T ss_dssp HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT--
T ss_pred hhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCC--
Confidence 76544 4567899999999999998 6764321 1222334444444
Q ss_pred ccceEEecccccc---ccccccccc
Q psy12244 153 KKSVLRIWHRRCF---SCADCHRSL 174 (257)
Q Consensus 153 ~~~~i~iSa~~g~---gi~~l~~~i 174 (257)
++++++||++|. ||+++|+.|
T Consensus 141 -~~~~e~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 141 -MPLFETSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp -CCEEECCSSSGGGGSCHHHHHHHH
T ss_pred -CEEEEEecccCCcCcCHHHHHHHh
Confidence 469999999854 777777654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.60 E-value=1.1e-15 Score=115.67 Aligned_cols=126 Identities=14% Similarity=0.118 Sum_probs=89.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|.+|||||||+++|++..... ...|............ ..+.++|++|+.
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 60 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVT-----------------TIPTIGFNVETVTYKN------LKFQVWDLGGLT 60 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-----------------CCCCSSEEEEEEEETT------EEEEEEEECCCG
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcc-----------------eecccceeeeeeccCc------eEEEEeeccccc
Confidence 44679999999999999999997643211 0112111222233333 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHH-HhCCCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQT-LFNIDK 153 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~-~~~~~~ 153 (257)
.+.......+...+++++++|... .|+.... ..+....+.. .+....
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~ 140 (169)
T d1upta_ 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRK 140 (169)
T ss_dssp GGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSC
T ss_pred cccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCC
Confidence 988888888899999999999886 6665433 3334443332 223345
Q ss_pred cceEEecccccccccccccccC
Q psy12244 154 KSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 154 ~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.+++++||++|.||++++++|.
T Consensus 141 ~~~~~~SA~~g~gv~e~~~~l~ 162 (169)
T d1upta_ 141 WQIFKTSATKGTGLDEAMEWLV 162 (169)
T ss_dssp EEEEECCTTTCTTHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHH
Confidence 6899999999999999998875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=7.6e-16 Score=117.79 Aligned_cols=126 Identities=14% Similarity=0.156 Sum_probs=80.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCC---C
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTP---G 104 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtp---G 104 (257)
-.+|+++|..|+|||||+++|++........ ......+.....+.+ ++....+.+||+| |
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~-------------~~t~~~~~~~~~~~~----~~~~~~~~~~d~~~~~g 65 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-------------CEVLGEDTYERTLMV----DGESATIILLDMWENKG 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTEEEEEEEE----TTEEEEEEEECCTTTTH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCcccc-------------ccceeeecceeeecc----CCceeeeeeeccccccc
Confidence 4689999999999999999996532211100 000111111122222 4455677788866 4
Q ss_pred CcccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC--HHHHHHHHHHHhCC
Q psy12244 105 HVDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN--PEACEEQLQTLFNI 151 (257)
Q Consensus 105 ~~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~--~~~~~~~~~~~~~~ 151 (257)
+++| ....+++.+|++|+|+|.++ +|+.+.+ ..+..+++.+.++
T Consensus 66 ~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~- 142 (172)
T d2g3ya1 66 ENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD- 142 (172)
T ss_dssp HHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-
T ss_pred cccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcC-
Confidence 5555 34557889999999999988 7764332 1222234444444
Q ss_pred CccceEEecccccccccccccccC
Q psy12244 152 DKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 152 ~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
++++++||++|.||+++++.|.
T Consensus 143 --~~~~e~Sak~g~~i~~~f~~l~ 164 (172)
T d2g3ya1 143 --CKFIETSAAVQHNVKELFEGIV 164 (172)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHH
T ss_pred --CeEEEEeCCCCcCHHHHHHHHH
Confidence 4699999999999999988765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=1.1e-15 Score=117.68 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=84.7
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
.+|+++|..++|||||+++|+...- . .+.. .|+.. .....+.. ++..+.+.+||++|++.+
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f--~------------~~~~--~t~~~-~~~~~~~~--~~~~~~~~i~D~~g~~~~ 63 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCF--P------------ENYV--PTVFE-NYTASFEI--DTQRIELSLWDTSGSPYY 63 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC--C------------SSCC--CCSEE-EEEEEEEC--SSCEEEEEEEEECCSGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC--C------------CccC--Cceee-cccccccc--cceEEeeccccccccccc
Confidence 3689999999999999999976321 1 1111 12111 11111222 566789999999999999
Q ss_pred HHHHHHhhhhcceEEEEEecCc------------------------------cCCCCCCH--------------HHHHHH
Q psy12244 109 SNEVTRSLAACQGVVLLIDANQ------------------------------VDLKNANP--------------EACEEQ 144 (257)
Q Consensus 109 ~~~~~~~~~~aD~~ilVvd~~~------------------------------~D~~~~~~--------------~~~~~~ 144 (257)
.......++.+|++++|+|.++ +|+..... .+....
T Consensus 64 ~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~ 143 (179)
T d1m7ba_ 64 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 143 (179)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred cccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHH
Confidence 8888888999999999999988 55532110 111122
Q ss_pred HHHHhCCCccceEEeccccccc-ccccccccC
Q psy12244 145 LQTLFNIDKKSVLRIWHRRCFS-CADCHRSLD 175 (257)
Q Consensus 145 ~~~~~~~~~~~~i~iSa~~g~g-i~~l~~~i~ 175 (257)
+.+.++ ..+++++||++|.| ++++|+.+.
T Consensus 144 ~a~~~~--~~~y~E~SAk~~~n~i~~~F~~~~ 173 (179)
T d1m7ba_ 144 MAKQIG--AATYIECSALQSENSVRDIFHVAT 173 (179)
T ss_dssp HHHHHT--CSEEEECBTTTBHHHHHHHHHHHH
T ss_pred HHHHhC--CCeEEEEeCCCCCcCHHHHHHHHH
Confidence 333223 35699999999985 999988665
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.5e-15 Score=116.92 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHH
Q psy12244 16 KATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 16 ~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
++.+|.++|.++.++|+++|++|||||||+|+|++
T Consensus 4 ~~~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 4 SAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp EESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCChhHCCCccCCEEEEECCCCCCHHHHHHHHhC
Confidence 34577899989999999999999999999999955
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=1.1e-14 Score=111.63 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=77.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEece-eeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQ-TASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
.-.|+++|++|||||||+|+|++....+... ...|.... ........ ..+.++|+||..
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~------~~~~~~~~~~~~ 64 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSR--------------KAQTTRHRIVGIHTEGA------YQAIYVDTPGLH 64 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCC--------------CSSCCSSCEEEEEEETT------EEEEEESSSSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCceeecc--------------CCCceEEEEEeeeecCC------ceeEeecCCCce
Confidence 4569999999999999999998654332221 11111111 12222222 567788999876
Q ss_pred ccHHHHHH---------hhhhcceEEEEEecCc-------------------------cCCCCCC--HHHHHHHHHHHhC
Q psy12244 107 DFSNEVTR---------SLAACQGVVLLIDANQ-------------------------VDLKNAN--PEACEEQLQTLFN 150 (257)
Q Consensus 107 ~~~~~~~~---------~~~~aD~~ilVvd~~~-------------------------~D~~~~~--~~~~~~~~~~~~~ 150 (257)
........ ....+|+++++.|+.. +|..... .....+.+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~-- 142 (179)
T d1egaa1 65 MEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQ-- 142 (179)
T ss_dssp HHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTT--
T ss_pred ecchhhhhhhhhhccccchhhcceeEEEEecCccchhHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhhh--
Confidence 53322111 1235788888888877 5544322 12222233332
Q ss_pred CCccceEEecccccccccccccccCC
Q psy12244 151 IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 151 ~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+...+++++||++|.|+++|++.|.+
T Consensus 143 ~~~~~~~~vSA~~g~gi~~L~~~i~~ 168 (179)
T d1egaa1 143 MNFLDIVPISAETGLNVDTIAAIVRK 168 (179)
T ss_dssp SCCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred cCCCCEEEEeCcCCCCHHHHHHHHHH
Confidence 34467999999999999999998873
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.54 E-value=2.8e-15 Score=115.05 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=81.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
++..+|+++|.+|||||||+++|++.... +...+.......+.+.. ..+.++|++|+
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 67 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-----------------QHVPTLHPTSEELTIAG------MTFTTFDLGGH 67 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-----------------------CCCCCSCEEEEETT------EEEEEEEECC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-----------------ceecccccceeEEEecc------cccccccccch
Confidence 45678999999999999999999542110 11122222333344444 67889999999
Q ss_pred cccHHHHHHhhhhcceEEEEEecCc-------------------------------cCCCCCC-HHHHHHHHHHHh----
Q psy12244 106 VDFSNEVTRSLAACQGVVLLIDANQ-------------------------------VDLKNAN-PEACEEQLQTLF---- 149 (257)
Q Consensus 106 ~~~~~~~~~~~~~aD~~ilVvd~~~-------------------------------~D~~~~~-~~~~~~~~~~~~---- 149 (257)
..+...........+++++++|..+ .|+.... ..++.+.+...-
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~ 147 (186)
T d1f6ba_ 68 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTG 147 (186)
T ss_dssp ---CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCC
T ss_pred hhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchh
Confidence 9888777888899999999999887 5554432 222222221100
Q ss_pred ---------CCCccceEEecccccccccccccccC
Q psy12244 150 ---------NIDKKSVLRIWHRRCFSCADCHRSLD 175 (257)
Q Consensus 150 ---------~~~~~~~i~iSa~~g~gi~~l~~~i~ 175 (257)
.....+++++||++|+||++++++|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~ 182 (186)
T d1f6ba_ 148 KGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 182 (186)
T ss_dssp SSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred hhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 01123589999999999999998876
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=1.8e-14 Score=111.57 Aligned_cols=76 Identities=8% Similarity=0.197 Sum_probs=60.0
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
..+|+++|..|||||||+++|..... .|.......+.+.. ..+.+|||+|++.
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~---------------------~t~~~~~~~~~~~~------~~~~i~D~~Gq~~ 54 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHE---------------------AGTGIVETHFTFKD------LHFKMFDVGGQRS 54 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHS---------------------CCCSEEEEEEEETT------EEEEEEEECCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC---------------------CCccEEEEEEEeee------eeeeeeccccccc
Confidence 46899999999999999999965321 11122223344433 8899999999999
Q ss_pred cHHHHHHhhhhcceEEEEEecCc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
|...+..+++.++++++|+|.+.
T Consensus 55 ~~~~~~~~~~~~~~~i~v~d~~~ 77 (195)
T d1svsa1 55 ERKKWIHCFEGVTAIIFCVALSD 77 (195)
T ss_dssp GGGGGGGGCTTCSEEEEEEEGGG
T ss_pred cccchhhcccCCceeeeEEeecc
Confidence 99999999999999999999876
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=1.1e-13 Score=107.37 Aligned_cols=80 Identities=14% Similarity=0.237 Sum_probs=62.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|..+||||||+++|...... .-.|+......+.+.. ..+.+||++|++
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~------------------~~pTiG~~~~~~~~~~------~~~~~~d~~g~~ 56 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS------------------GVPTTGIIEYPFDLQS------VIFRMVDVGGQR 56 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS------------------CCCCCSCEEEEEECSS------CEEEEEECCCST
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC------------------CCceeeEEEEEEeccc------eeeeeccccccc
Confidence 3468999999999999999999654221 1134433333444433 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+...+...++.++++++++|..+
T Consensus 57 ~~~~~~~~~~~~~~~~i~~~~~~~ 80 (200)
T d2bcjq2 57 SERRKWIHCFENVTSIMFLVALSE 80 (200)
T ss_dssp TGGGGGGGGCSSCSEEEEEEEGGG
T ss_pred cccccccccccccceeeEeeeccc
Confidence 999999999999999999999887
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=4.4e-13 Score=105.00 Aligned_cols=82 Identities=24% Similarity=0.341 Sum_probs=57.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCccc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVDF 108 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 108 (257)
++|+|+|++|+|||||+++|++...... . .|+......+.+. ......+.+||+||++.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~---------------~--~t~~~~~~~~~~~---~~~~~~~~~~d~~g~~~~ 60 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT---------------Q--TSITDSSAIYKVN---NNRGNSLTLIDLPGHESL 60 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCB---------------C--CCCSCEEEEEECS---STTCCEEEEEECCCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc---------------c--CCeeEEEEEEEEe---eeeeeeeeeeeccccccc
Confidence 5799999999999999999986432111 1 1222222223322 334578999999999988
Q ss_pred HH-HHHHhhhhcceEEEEEecCc
Q psy12244 109 SN-EVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 109 ~~-~~~~~~~~aD~~ilVvd~~~ 130 (257)
.. .+...+..+|++++|+|+.+
T Consensus 61 ~~~~~~~~~~~~~~~i~v~D~~d 83 (207)
T d2fh5b1 61 RFQLLDRFKSSARAVVFVVDSAA 83 (207)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTT
T ss_pred cchhhhhhhhhccccceEEEccc
Confidence 64 45566789999999999986
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=3.3e-13 Score=104.84 Aligned_cols=79 Identities=11% Similarity=0.235 Sum_probs=56.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|..|||||||+++|.... ....|+......+.++. ..+.+||++|++
T Consensus 1 r~iKivllG~~~vGKTsll~r~~f~~-------------------~~~pTiG~~~~~~~~~~------~~~~~~D~~gq~ 55 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMRIIH-------------------GQDPTKGIHEYDFEIKN------VPFKMVDVGGQR 55 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH-------------------SCCCCSSEEEEEEEETT------EEEEEEEECC--
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCC-------------------CCCCeeeeEEEEEeeee------eeeeeeccccee
Confidence 45689999999999999999993211 12234444445555555 889999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.+...+..+++.++++++++|..+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~ 79 (200)
T d1zcba2 56 SERKRWFECFDSVTSILFLVSSSE 79 (200)
T ss_dssp -----CTTSCTTCCEEEEEEETTC
T ss_pred eecccccccccccceeEEEEEcCC
Confidence 999999999999999999999886
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=7.8e-13 Score=103.39 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=55.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCcc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHVD 107 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 107 (257)
.++|+|+|++|+|||||+|+|++... .++.|.......+.+.+ ..+.+|||||+..
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~------------------~~~tt~~~~~~~~~~~~------~~~~l~D~~g~~~ 58 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSV------------------RPTVVSQEPLSAADYDG------SGVTLVDFPGHVK 58 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSC------------------CCBCCCSSCEEETTGGG------SSCEEEECCCCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC------------------CCeEEecceEEEEEeCC------eEEEEEecccccc
Confidence 35899999999999999999986321 12233333333333333 6788999999987
Q ss_pred cHHHHH----HhhhhcceEEEEEecCc
Q psy12244 108 FSNEVT----RSLAACQGVVLLIDANQ 130 (257)
Q Consensus 108 ~~~~~~----~~~~~aD~~ilVvd~~~ 130 (257)
+...+. .++..++.+++++|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~i~~vd~~~ 85 (209)
T d1nrjb_ 59 LRYKLSDYLKTRAKFVKGLIFMVDSTV 85 (209)
T ss_dssp GTHHHHHHHHHHGGGEEEEEEEEETTS
T ss_pred hhhHHHHHHHHHhhhccccceEEEEec
Confidence 554443 34566789999999875
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.22 E-value=1.2e-12 Score=104.74 Aligned_cols=36 Identities=25% Similarity=0.161 Sum_probs=27.0
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhh-----cceEEEEEecCc
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAA-----CQGVVLLIDANQ 130 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~-----aD~~ilVvd~~~ 130 (257)
..+.++|+|||..+...+...... .+.+++++|+..
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~ 135 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEI 135 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGG
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEecccc
Confidence 568899999999876665554433 457899999875
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.17 E-value=8.1e-11 Score=95.09 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=65.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
...+|+++|.+|+|||||+|+|++........ ..+.|.........+.+ ..+.||||||..
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~-------------~~~~T~~~~~~~~~~~g------~~i~viDTPGl~ 91 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-------------FQSEGPRPVMVSRSRAG------FTLNIIDTPGLI 91 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-------------SSCCCSSCEEEEEEETT------EEEEEEECCCSE
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCceeecC-------------CCCcceeEEEEEEEecc------EEEEEEeeeccc
Confidence 46789999999999999999998755443221 22344444444455554 789999999975
Q ss_pred c-------cHHHHHHhh--hhcceEEEEEecCccCCCCCCHHHHHHHHHHHhCC
Q psy12244 107 D-------FSNEVTRSL--AACQGVVLLIDANQVDLKNANPEACEEQLQTLFNI 151 (257)
Q Consensus 107 ~-------~~~~~~~~~--~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~ 151 (257)
+ ......... ...|++++|++.+.-... .......+.+.+.+|.
T Consensus 92 ~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~-~~~~~~l~~l~~~fg~ 144 (257)
T d1h65a_ 92 EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVD-NLDKLVAKAITDSFGK 144 (257)
T ss_dssp ETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCC-HHHHHHHHHHHHHHCG
T ss_pred CCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCC-HHHHHHHHHHHHHcch
Confidence 4 112222222 346888888876642221 1234455666666654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=1.1e-10 Score=100.01 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=49.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
.+.+|+|+|.+|+|||||+|+|++........ ...+ ..+.|.+. ..+.+.. ...+.||||||..
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~---~~~g------~~~tT~~~--~~~~~~~-----~~~~~l~DtPG~~ 118 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGA---AKTG------VVEVTMER--HPYKHPN-----IPNVVFWDLPGIG 118 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTS---CCCC------C----CCC--EEEECSS-----CTTEEEEECCCGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcc---CCCC------CCCCceee--eeeeccC-----CCeEEEEeCCCcc
Confidence 35789999999999999999998633211100 0000 01122221 1122211 1357899999976
Q ss_pred ccH---H--HHHHhhhhcceEEEEEecCc
Q psy12244 107 DFS---N--EVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 107 ~~~---~--~~~~~~~~aD~~ilVvd~~~ 130 (257)
... . .....+..+|+++++.|..-
T Consensus 119 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 147 (400)
T d1tq4a_ 119 STNFPPDTYLEKMKFYEYDFFIIISATRF 147 (400)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEEEESSCC
T ss_pred cccccHHHHHHHhhhhcceEEEEecCCCC
Confidence 421 1 12234567888888877554
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.03 E-value=2.1e-10 Score=93.62 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=56.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecc--------cCCc---cEEE
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------LDGE---EYLL 97 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------~~~~---~~~~ 97 (257)
.+|+|||.||||||||+|+|+.....+.. .+..|++++.+.+...+. +..+ ...+
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~--------------ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i 68 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN--------------YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTM 68 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCcccc--------------CCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeE
Confidence 47999999999999999999864433222 123344544444433210 0011 1368
Q ss_pred EEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 98 NLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 98 ~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.|+|.||... +-...++.++.+|+++.|||+..
T Consensus 69 ~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 69 EFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp EEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEccccCCCcccCCCccHHHHHHHHhccceEEEeeccC
Confidence 8999999754 22245778899999999998853
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.02 E-value=5e-10 Score=88.26 Aligned_cols=110 Identities=10% Similarity=0.221 Sum_probs=78.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGHV 106 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 106 (257)
+..+|+++|..|||||||+++|..... -.|+......+.++. ..+.+||++|+.
T Consensus 5 ~~~KilllG~~~vGKTsll~~~~~~~~--------------------~pTiG~~~~~~~~~~------~~~~~~D~~Gq~ 58 (221)
T d1azta2 5 ATHRLLLLGAGESGKSTIVKQMRILHV--------------------VLTSGIFETKFQVDK------VNFHMFDVGGQR 58 (221)
T ss_dssp HSEEEEEECSTTSSHHHHHHHHHHHHC--------------------CCCCSCEEEEEEETT------EEEEEEECCCST
T ss_pred hcCEEEEECCCCCCHHHHHHHHhcCCc--------------------CCCCCeEEEEEEECc------EEEEEEecCccc
Confidence 457899999999999999999954221 124444444455555 789999999999
Q ss_pred ccHHHHHHhhhhcceEEEEEecCccCC------CCCCHHHHHHHHHHHhCC---CccceEEeccc
Q psy12244 107 DFSNEVTRSLAACQGVVLLIDANQVDL------KNANPEACEEQLQTLFNI---DKKSVLRIWHR 162 (257)
Q Consensus 107 ~~~~~~~~~~~~aD~~ilVvd~~~~D~------~~~~~~~~~~~~~~~~~~---~~~~~i~iSa~ 162 (257)
.+...+...+..++++++|+|.+..|. ......+..+.+...++. ..+|++.+-.|
T Consensus 59 ~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK 123 (221)
T d1azta2 59 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNK 123 (221)
T ss_dssp TTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred eeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEech
Confidence 999999999999999999999998322 112245555666665543 33566555544
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.99 E-value=2.1e-10 Score=95.42 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=45.9
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEE--eec-------ccC---------
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLR--YTS-------ILD--------- 91 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--~~~-------~~~--------- 91 (257)
+|+++|.||||||||+|+|++....+.+ -+..|++++..... .+. .+.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~v~n--------------ypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVEIAN--------------YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNG 67 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETT
T ss_pred cEeEECCCCCCHHHHHHHHHCCCCchhc--------------CCCCcccCccceeeCCCCchhhhhhhccCccccccccc
Confidence 6999999999999999999764332211 12223333322211 000 000
Q ss_pred CccEEEEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 92 GEEYLLNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 92 ~~~~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
.....+.++|+||... ........++.+|+++.|||+..
T Consensus 68 ~~~~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 68 LALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp EEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred cccccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 1125799999999754 22233445688999999999975
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.93 E-value=1.1e-09 Score=90.19 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=62.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCc-cccCCCcccccchHHHhhhCceEeceeeEEEeecc--------cC---Ccc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGT-VLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSI--------LD---GEE 94 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~-~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--------~~---~~~ 94 (257)
...+|+|+|.||||||||+|+|+..... +.+ .+..|++++...+...+. +. ...
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~an--------------ypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~ 74 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN--------------YPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVP 74 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC--------------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCC--------------CCccCccCCeEEEeccccchhhhhhcccCCceec
Confidence 3467999999999999999999864321 211 234566665555544320 00 012
Q ss_pred EEEEEeCCCCCcc-------cHHHHHHhhhhcceEEEEEecCc
Q psy12244 95 YLLNLIDTPGHVD-------FSNEVTRSLAACQGVVLLIDANQ 130 (257)
Q Consensus 95 ~~~~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvd~~~ 130 (257)
..+.|+|.||... .-......++.+|+++.|||+..
T Consensus 75 ~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 75 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 4788999999653 44567888999999999999976
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=4.4e-10 Score=93.49 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=47.7
Q ss_pred EEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCC-HHHHHHHHHHHh--
Q psy12244 95 YLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNAN-PEACEEQLQTLF-- 149 (257)
Q Consensus 95 ~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~-~~~~~~~~~~~~-- 149 (257)
+.+.|+.|.|...-. ......+|.+++|++... +|....+ ......+++..+
T Consensus 147 ~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~ 223 (327)
T d2p67a1 147 YDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHI 223 (327)
T ss_dssp CSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhccccEEEEEeecccchHHHHHHHHHHHHHhhh
Confidence 457778888765432 234556788888886655 4443322 122223333222
Q ss_pred -----CCCccceEEecccccccccccccccCC
Q psy12244 150 -----NIDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 150 -----~~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
+....|++.+||++|+|+++|++.|.+
T Consensus 224 ~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~ 255 (327)
T d2p67a1 224 LRRKYDEWQPRVLTCSALEKRGIDEIWHAIID 255 (327)
T ss_dssp SCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred cccCCCCCcceeEEEEeeCCCCHHHHHHHHHH
Confidence 112247999999999999999999974
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=98.77 E-value=1.2e-09 Score=88.49 Aligned_cols=60 Identities=38% Similarity=0.662 Sum_probs=41.1
Q ss_pred hhhhcceeeEeeecccchhhHHHHHHhhCCcccCCC----ccccCChhhHhhhCceEeeeeeeC
Q psy12244 198 IARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGS----SQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 198 ~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~----~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+.|+++++||+++||+++.+++++..|.+.+.|. .+++|+.++|++||+||++++.+|
T Consensus 3 ~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~ 66 (276)
T d2bv3a2 3 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 66 (276)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEE
T ss_pred hhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeee
Confidence 456799999999999999999999999999988766 579999999999999999998764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.70 E-value=8.6e-09 Score=85.44 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=80.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccC-------------CCcccccchHHHhh---hCceEeceeeEEEeec-
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS-------------GSSQVLDSLQVEQE---RGITVKAQTASLRYTS- 88 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~-------------~~~~~~d~~~~e~~---~g~t~~~~~~~~~~~~- 88 (257)
.+.+.|+|.|++|+|||||+++|+......... .....-|..+.... .+.-+......-...+
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~ 128 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 128 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence 456889999999999999999998532111000 12222222221111 1111110000000000
Q ss_pred ---------ccCCccEEEEEeCCCCCcccHHHHHHhhhhcceEEEEEecCc----------------------cCCCCCC
Q psy12244 89 ---------ILDGEEYLLNLIDTPGHVDFSNEVTRSLAACQGVVLLIDANQ----------------------VDLKNAN 137 (257)
Q Consensus 89 ---------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~aD~~ilVvd~~~----------------------~D~~~~~ 137 (257)
.++-..+.+.||.|.|...-... ....+|..++|+.... +|+.+..
T Consensus 129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~aDi~vvNKaD~~~~~ 205 (323)
T d2qm8a1 129 AAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGE 205 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTTCCH
T ss_pred hHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhhhhheeeEeccccccch
Confidence 00112367788888887654322 3345888888887776 5544332
Q ss_pred --HHHHHHHHHHHhC-------CCccceEEecccccccccccccccCC
Q psy12244 138 --PEACEEQLQTLFN-------IDKKSVLRIWHRRCFSCADCHRSLDS 176 (257)
Q Consensus 138 --~~~~~~~~~~~~~-------~~~~~~i~iSa~~g~gi~~l~~~i~~ 176 (257)
......+.+..+. ....|++.+||++|.|++++++.|..
T Consensus 206 ~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~ 253 (323)
T d2qm8a1 206 RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIED 253 (323)
T ss_dssp HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHH
Confidence 1222223333321 12347999999999999999999974
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.69 E-value=4e-09 Score=85.65 Aligned_cols=59 Identities=34% Similarity=0.361 Sum_probs=35.6
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCccccCCCcccccchHHHhhhCceEeceeeEEEeecccCCccEEEEEeCCCCC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSLQVEQERGITVKAQTASLRYTSILDGEEYLLNLIDTPGH 105 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~~~~~~~~~liDtpG~ 105 (257)
.+..+|+++|.+|||||||+|+|.+..... ....+|+|.+..... . + ..+.++||||.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~-------------~~~~pG~Tr~~~~i~--~-~------~~~~l~DTPGi 167 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNIAK-------------TGDRPGITTSQQWVK--V-G------KELELLDTPGI 167 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------------------CCEE--E-T------TTEEEEECCCC
T ss_pred CCceEEEEEecCccchhhhhhhhhccceEE-------------ECCcccccccceEEE--C-C------CCeEEecCCCc
Confidence 355779999999999999999998755433 334678887654322 2 1 35889999997
Q ss_pred c
Q psy12244 106 V 106 (257)
Q Consensus 106 ~ 106 (257)
.
T Consensus 168 ~ 168 (273)
T d1puja_ 168 L 168 (273)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.56 E-value=1.2e-08 Score=79.74 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+..+++|++|||||||+|+|+..
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCCHHHHHHhhcch
Confidence 46799999999999999999653
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=9.9e-09 Score=85.49 Aligned_cols=59 Identities=49% Similarity=0.774 Sum_probs=38.5
Q ss_pred hhhcceeeEeeecccchhhHHHHHHhhCCcccC--CCccccCChhhHhhhCceEeeeeeeC
Q psy12244 199 ARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSS--GSSQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 199 ~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~--g~~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
..+|+++++||+++||+|+.+++++.+|.+... +...++|..++|++||+||+++..++
T Consensus 15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l 75 (341)
T d1n0ua2 15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISL 75 (341)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEE
T ss_pred ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEE
Confidence 457899999999999999999999999988754 34668999999999999999988753
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.49 E-value=5.5e-07 Score=73.75 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=23.4
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.+.|+++|..++|||||+|+|++....
T Consensus 24 lP~ivVvG~~ssGKSSliNaLlG~~~l 50 (306)
T d1jwyb_ 24 LPQIVVVGSQSSGKSSVLENIVGRDFL 50 (306)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence 457999999999999999999986543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.42 E-value=2.5e-08 Score=78.14 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+..+++|++|+|||||+|+|+..
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred ceEEEECCCCccHHHHHHhhccH
Confidence 45689999999999999999653
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=4.3e-08 Score=77.75 Aligned_cols=56 Identities=38% Similarity=0.497 Sum_probs=47.3
Q ss_pred cceeeEeeecccchhhHHHHHHhhCCccc-------------CC----CccccCChhhHhhhCceEeeeeeeC
Q psy12244 202 RNFSIIAHVDHGKSTLADRLLEMTGTVLS-------------SG----SSQVLDSLQVEQERGITVKAQTASL 257 (257)
Q Consensus 202 ~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~-------------~g----~~~~~d~~~~e~~rg~ti~~~~~~~ 257 (257)
.+++++|||++||+|+.+++++..|.+.. .+ ..+.+|..++|++||+||.++..+|
T Consensus 7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~ 79 (239)
T d1f60a3 7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 79 (239)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEe
Confidence 58999999999999999999999987642 11 1568999999999999999887654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.34 E-value=1.3e-06 Score=71.12 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=23.3
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.+.|+++|+.++|||||+|+|++....
T Consensus 26 ~P~ivvvG~~SsGKSsliNaLlg~~~l 52 (299)
T d2akab1 26 LPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCeEEEEcCCCCCHHHHHHHHhCCCcC
Confidence 457999999999999999999985543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.16 E-value=1.6e-06 Score=66.98 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=20.9
Q ss_pred CCCCCCceeeEEEEecCCCChHHHHHHHHH
Q psy12244 21 EDIPIARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 21 ~~~~~~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...|.+.+..|+++|++|+||||.+-+|..
T Consensus 5 ~~~~~k~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 5 KVIPDKIPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp CCSCSSSSEEEEEECSCCC----HHHHHHH
T ss_pred ccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 355666788899999999999999888864
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=9.8e-06 Score=62.33 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=22.1
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHH
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..++..|+++|++|+||||.+..|..
T Consensus 6 ~~~p~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 6 GKAPFVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp SCTTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567889999999999999999864
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.03 E-value=2.3e-06 Score=66.07 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.1
Q ss_pred CCCCceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 23 IPIARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 23 ~~~~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+..++..|+++|++|+||||.+-.|...
T Consensus 6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44567788999999999999998888643
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.91 E-value=1.1e-06 Score=70.79 Aligned_cols=123 Identities=20% Similarity=0.113 Sum_probs=70.4
Q ss_pred cHHHHHHhhhhcceEEEEEecCc------------------------cCCCCCCHHHHHHHHHHHhCCCccceEEecccc
Q psy12244 108 FSNEVTRSLAACQGVVLLIDANQ------------------------VDLKNANPEACEEQLQTLFNIDKKSVLRIWHRR 163 (257)
Q Consensus 108 ~~~~~~~~~~~aD~~ilVvd~~~------------------------~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~ 163 (257)
..+++...+..+|++|+|+||.. +|+.+ ....+...+.+.....+++++|+++
T Consensus 5 a~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~---~~~~~~w~~~f~~~~~~~i~isa~~ 81 (273)
T d1puja_ 5 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKAD---AAVTQQWKEHFENQGIRSLSINSVN 81 (273)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSC---HHHHHHHHHHHHTTTCCEEECCTTT
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHcCCCeEEEEECccCCc---hHHHHHHHHHHHhcCCccceeeccc
Confidence 34566778899999999999987 66643 2333344444433345689999999
Q ss_pred cccccccccccCCCcccCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHHhhCCcccCCCccccCCh
Q psy12244 164 CFSCADCHRSLDSTNLNDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLEMTGTVLSSGSSQVLDSL 240 (257)
Q Consensus 164 g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g~~~~~d~~ 240 (257)
+.+...+.+.+..... +......... .......+.++|..+.||+++.+++..........-++.|.|..
T Consensus 82 ~~~~~~~~~~~~~~l~-~~~~~~~~~~------~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~ 151 (273)
T d1puja_ 82 GQGLNQIVPASKEILQ-EKFDRMRAKG------VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ 151 (273)
T ss_dssp CTTGGGHHHHHHHHHH-HHHHHHHHTT------CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C
T ss_pred CCCccccchhhhhhhh-hhhhhhhhcc------CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccce
Confidence 9999877655542110 0000000000 00112458899999999999999999876655544456665543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.69 E-value=2e-05 Score=60.42 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
++..|+++|++|+||||.+-.|...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999888643
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.62 E-value=5e-06 Score=65.76 Aligned_cols=56 Identities=45% Similarity=0.511 Sum_probs=28.1
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC------------C-----CccccCChhhHhhhCceEeeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------G-----SSQVLDSLQVEQERGITVKAQTAS 256 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g-----~~~~~d~~~~e~~rg~ti~~~~~~ 256 (257)
..+++++|||++||+|+.++|++..|.+... + ..+.+|..+.|++||+||..+...
T Consensus 24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~ 96 (245)
T d1r5ba3 24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY 96 (245)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc
Confidence 4589999999999999999999999876431 1 146899999999999999877543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.58 E-value=1.4e-05 Score=61.36 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=19.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...|+++|++|+||||.+..|...
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345788999999999999998643
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00015 Score=57.96 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.2
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
++...|+|+|+..+|||+|+|.|++..
T Consensus 30 ~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 30 QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence 457789999999999999999997643
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=97.41 E-value=1.3e-05 Score=62.28 Aligned_cols=55 Identities=36% Similarity=0.564 Sum_probs=37.0
Q ss_pred hcceeeEeeecccchhhHHHHHHhhCCcccC------------CC-------ccccCChhhHhhhCceEeeeee
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEMTGTVLSS------------GS-------SQVLDSLQVEQERGITVKAQTA 255 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~~g~~~~~------------g~-------~~~~d~~~~e~~rg~ti~~~~~ 255 (257)
..+++++|||++||+|+.++|++..|.+.+. |. .+.+|..++|++||+||..+..
T Consensus 9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~ 82 (222)
T d1zunb3 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR 82 (222)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence 3568999999999999999999999876431 11 2355667899999999987654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=5.1e-05 Score=55.48 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+.++|+|.+|||||||+++|+.
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.33 E-value=5.6e-05 Score=58.47 Aligned_cols=96 Identities=10% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCCCCcc-cHHHHHHhhhhcceEEEEEecCccCCCCCCHHHHHHHHHHHhCCCccceEEecccccccccccccccCCCcc
Q psy12244 101 DTPGHVD-FSNEVTRSLAACQGVVLLIDANQVDLKNANPEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 101 DtpG~~~-~~~~~~~~~~~aD~~ilVvd~~~~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~ 179 (257)
+-|.... +....+..+..+++=.++| .+.+|+...+......+..+.+.. ..+++.+|+++|.|+++|.+.+..
T Consensus 21 ~~P~~~~~~ldR~Lv~a~~~~i~pvIv-lnK~DL~~~~~~~~~~~~~~~~~~-~~~v~~vSa~~~~g~~~L~~~l~~--- 95 (225)
T d1u0la2 21 KMPETSTYIIDKFLVLAEKNELETVMV-INKMDLYDEDDLRKVRELEEIYSG-LYPIVKTSAKTGMGIEELKEYLKG--- 95 (225)
T ss_dssp STTCCCHHHHHHHHHHHHHTTCEEEEE-ECCGGGCCHHHHHHHHHHHHHHTT-TSCEEECCTTTCTTHHHHHHHHSS---
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEE-EeCcccCCHHHHHHHHHhhccccc-ceeEEEeccccchhHhhHHHHhcC---
Confidence 4454432 3333333444444433333 366888653222222223333322 256899999999999998776651
Q ss_pred cCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHH
Q psy12244 180 NDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
+..+++|+.+.||+|+.+.++-
T Consensus 96 ----------------------kt~~~~G~SGVGKSTLiN~L~~ 117 (225)
T d1u0la2 96 ----------------------KISTMAGLSGVGKSSLLNAINP 117 (225)
T ss_dssp ----------------------SEEEEECSTTSSHHHHHHHHST
T ss_pred ----------------------CeEEEECCCCCCHHHHHHhhcc
Confidence 2367899999999999999854
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.31 E-value=5.6e-05 Score=55.91 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
-.++|+|.|++|+|||||+++|....+.
T Consensus 6 ~~K~I~i~G~~GsGKTTla~~La~~~~~ 33 (192)
T d1lw7a2 6 FAKTVAILGGESSGKSVLVNKLAAVFNT 33 (192)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578999999999999999999876543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.28 E-value=6.1e-05 Score=58.44 Aligned_cols=96 Identities=14% Similarity=0.073 Sum_probs=56.5
Q ss_pred CCCCcc-cHHHHHHhhhhcceEEEEEecCccCCCCCC-HHHHHHHHHHHhCCCccceEEecccccccccccccccCCCcc
Q psy12244 102 TPGHVD-FSNEVTRSLAACQGVVLLIDANQVDLKNAN-PEACEEQLQTLFNIDKKSVLRIWHRRCFSCADCHRSLDSTNL 179 (257)
Q Consensus 102 tpG~~~-~~~~~~~~~~~aD~~ilVvd~~~~D~~~~~-~~~~~~~~~~~~~~~~~~~i~iSa~~g~gi~~l~~~i~~~~~ 179 (257)
-|.... +....+..+..+++-.++| .+.+|+.... .+...+.+.+.+.....+++.+|++++.|+++|.+++.
T Consensus 22 ~P~~~~~~idR~Lv~a~~~~i~pvIv-lnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~~l~---- 96 (231)
T d1t9ha2 22 QPSFSTALLDRFLVLVEANDIQPIIC-ITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQ---- 96 (231)
T ss_dssp TTTCCHHHHHHHHHHHHTTTCEEEEE-EECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGT----
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEE-EecccccccHHHHHHHHHHHHHHhhccccceeeecCChhHHHHHHHhhc----
Confidence 354432 3333333444444322222 3557886432 22333333332211124589999999999999877654
Q ss_pred cCCCCCCCCCCCCCCCcchhhhcceeeEeeecccchhhHHHHHH
Q psy12244 180 NDGLAKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLE 223 (257)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~Gk~~~~~~i~~ 223 (257)
.+..+++|+...||+|+.++++-
T Consensus 97 ---------------------~~~~vl~G~SGVGKSSLiN~L~~ 119 (231)
T d1t9ha2 97 ---------------------DKTTVFAGQSGVGKSSLLNAISP 119 (231)
T ss_dssp ---------------------TSEEEEEESHHHHHHHHHHHHCC
T ss_pred ---------------------cceEEEECCCCccHHHHHHhhcc
Confidence 12356899999999999999864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.24 E-value=0.00011 Score=55.17 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=25.4
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.+++..|+|+|++||||||+...|....+.
T Consensus 3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~ 32 (194)
T d1qf9a_ 3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 456788999999999999999999876553
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.21 E-value=8.8e-05 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+|+|+|++|+|||||+..+++..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l 24 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhcC
Confidence 69999999999999999998743
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.17 E-value=9.5e-05 Score=54.07 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.5
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++|+|+|++||||||+.++|....+
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
Confidence 46799999999999999999976544
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00079 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+++..+|.|--|+|||||+++++..
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence 5677899999999999999999874
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.11 E-value=0.00014 Score=53.34 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.++|+|..|||||||+++|+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4578999999999999999975
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.97 E-value=0.00025 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=23.1
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
++..+|+|.|++||||||+.+.|....
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999997654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.91 E-value=0.00026 Score=52.98 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=24.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCcc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTV 55 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~ 55 (257)
+|++|+|+|++|+||||+...|....+..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~ 30 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKTKYQLA 30 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 45679999999999999999997766543
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.86 E-value=0.00038 Score=52.23 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=25.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCcc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGTV 55 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~~ 55 (257)
.+..+|+|+|++||||||+...|....+..
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~~~g~~ 33 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITKHFELK 33 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHHHBCCE
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 577789999999999999999998766543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.80 E-value=0.00049 Score=51.24 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=23.1
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHH
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
....+..|+|.|++|||||||.++|..
T Consensus 18 ~~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 18 KTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345667799999999999999999965
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.76 E-value=0.00044 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.3
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.|+++|.+|||||||.++|...
T Consensus 4 lIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4788999999999999998654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.72 E-value=0.00046 Score=52.09 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=20.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.-|+++|.+|||||||.++|....
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999997644
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.0004 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
++|.|.|++|+|||||+.+++..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999753
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00049 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
++|+++|++|+||||+...|....+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976544
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.69 E-value=0.00066 Score=50.07 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=23.6
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
..++.-|+++|.+||||||+..+|+...+
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~~~ 39 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG 39 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGGGT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34566799999999999999999965443
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.00078 Score=50.45 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=24.9
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++.+.|+|+|++||||||+...|....+.
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~g~ 34 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF 34 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45677999999999999999999886654
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.62 E-value=0.00065 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|.|++|+||||+.++|....+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999976543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.53 E-value=0.00076 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.8
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
+|+|+|++||||||+...|....+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~ 26 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 6999999999999999999776554
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.52 E-value=0.00067 Score=49.36 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++|+++|.+|+||||+...|....+.
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l~~ 26 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDLDL 26 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999776543
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.46 E-value=0.00071 Score=49.32 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++|+++|.+|+||||+...|....+.
T Consensus 2 p~IvliG~~G~GKSTig~~La~~l~~ 27 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKALGV 27 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999766543
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.00089 Score=49.96 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
|+.|+|+|++||||||+...|....+.
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~~g~ 27 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEKYGY 27 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999775554
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.00056 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-.|+|+|++|+|||||++.|++
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~g 51 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQR 51 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999954
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.0013 Score=47.64 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=23.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
...+-++|+|.+|+||||+...|....+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456688999999999999999977654
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.39 E-value=0.001 Score=49.19 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=22.1
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
+|+|+|++||||||+...|....+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~ 26 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGT 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 6899999999999999999876654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.37 E-value=0.001 Score=48.78 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.|+|.|.+||||||+++.|...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.0011 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.+|+++|++||||||+...|....+.
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~~~~~ 26 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIMEKYGI 26 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999776554
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.32 E-value=0.00078 Score=52.94 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.3
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|++|+|||||++.|++
T Consensus 43 ~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999999954
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.31 E-value=0.0011 Score=48.83 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.+|+|+|++||||||+...|....+.
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~~g~ 26 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEKLGI 26 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 37999999999999999999876554
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.30 E-value=0.0011 Score=49.43 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHHhc
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~ 52 (257)
|+|+|++||||+||+++|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999997653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.29 E-value=0.0013 Score=48.98 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.+|+|+|++||||||+...|....+.
T Consensus 4 ~riil~G~pGSGKsT~a~~La~~~g~ 29 (190)
T d1ak2a1 4 VRAVLLGPPGAGKGTQAPKLAKNFCV 29 (190)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999876554
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0012 Score=48.89 Aligned_cols=23 Identities=9% Similarity=0.307 Sum_probs=20.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
-|+|+|++|+||+||+++|+...
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred cEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999998643
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.27 E-value=0.0014 Score=48.92 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=24.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcCcc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTGTV 55 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~~~ 55 (257)
+.+.|.|+|++||||||+...|....+..
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~ 35 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYT 35 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45668999999999999999998766543
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=96.26 E-value=0.00083 Score=52.40 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.7
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-.++|+|+.|+|||||++.|++
T Consensus 29 e~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999954
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.25 E-value=0.0013 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.2
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
-|+|+|++|||||||++.|....
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999997653
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.22 E-value=0.0015 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.3
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+-|+|.|.+|+||||+.++|....+
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4578889999999999999987654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0016 Score=49.34 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
|..|+|.|.+|||||||.+.|...-+
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56799999999999999999976543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.21 E-value=0.0019 Score=46.92 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+-..|.++|.+||||||+..+|...
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999998653
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.00093 Score=52.42 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|++
T Consensus 42 ~vaivG~sGsGKSTLl~li~g 62 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQN 62 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999854
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.18 E-value=0.0012 Score=52.59 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.3
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|++
T Consensus 64 ~vaivG~nGsGKSTLl~~i~G 84 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILG 84 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 589999999999999999965
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.14 E-value=0.0019 Score=47.53 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+-|+|.|.+||||||+++.|...
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.13 E-value=0.0012 Score=50.93 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=18.7
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|++|+|||||++.+.+
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~g 53 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGC 53 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCcchhhHhccC
Confidence 489999999999999998843
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0012 Score=50.96 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.+.+
T Consensus 28 i~~liGpsGsGKSTLl~~i~G 48 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAG 48 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 489999999999999999855
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.11 E-value=0.0012 Score=49.22 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=23.5
Q ss_pred CCCceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 24 PIARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 24 ~~~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
...++.-|+|-|..||||||+++.|...
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778999999999999999998543
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.11 E-value=0.001 Score=50.27 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.+++
T Consensus 29 i~~l~G~NGsGKSTLl~~i~g 49 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTIST 49 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 478999999999999999954
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.05 E-value=0.0018 Score=47.02 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.|+|.|++|+||||+.+.|....
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999986543
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0017 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
-|+|+|++|||||||+++|+...
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999998753
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.01 E-value=0.0017 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHHhc
Q psy12244 31 FSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~~ 52 (257)
|+|+|++||||+||+++|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8899999999999999997654
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.00 E-value=0.0027 Score=49.55 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=23.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.++.|.+.|++|+|||||..+|....+
T Consensus 30 ~~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 30 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3466799999999999999999977543
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.99 E-value=0.0015 Score=50.62 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.+.+
T Consensus 34 ~~~liGpsGaGKSTLl~~i~G 54 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAG 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 479999999999999999965
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.96 E-value=0.006 Score=47.43 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+++.|.+.|++|+|||+|..++....
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhhcc
Confidence 45779999999999999999997643
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.91 E-value=0.0016 Score=53.04 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.3
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+|+|+|.+|+|||||+++|+.
T Consensus 167 ~nili~G~tgSGKTT~l~al~~ 188 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIME 188 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CCEEEEeeccccchHHHHHHhh
Confidence 5799999999999999999965
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.0024 Score=47.03 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=22.2
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.+|+++|++||||||+...|....+.
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~g~ 28 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERFHA 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46889999999999999999776544
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.88 E-value=0.0022 Score=46.83 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.4
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.|+++|.+|+||||+...|....+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg~ 28 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALGY 28 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999766554
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.002 Score=50.03 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=18.8
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~G 53 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNL 53 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 479999999999999999844
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.87 E-value=0.0019 Score=50.12 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=18.8
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 26 ~~~liGpnGaGKSTll~~i~G 46 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 468999999999999999965
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=95.87 E-value=0.0019 Score=50.16 Aligned_cols=21 Identities=14% Similarity=0.155 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~sGaGKSTll~~i~g 51 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAG 51 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 489999999999999999855
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.77 E-value=0.0011 Score=52.00 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|++|+|||||++.|.+
T Consensus 46 ~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999998854
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.0015 Score=50.58 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 27 i~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 489999999999999999965
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=95.73 E-value=0.0014 Score=50.57 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 28 ~~~liGpsGaGKSTll~~l~G 48 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAG 48 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999965
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=95.72 E-value=0.0019 Score=50.19 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.+.+
T Consensus 34 i~~liGpnGaGKSTl~~~i~G 54 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 479999999999999999954
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=95.60 E-value=0.0022 Score=49.71 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 30 i~glvG~nGaGKSTLl~~l~G 50 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIIST 50 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999954
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0019 Score=47.85 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+...|.++|.+|||||||.+.|...
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4457889999999999999999653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.54 E-value=0.0042 Score=47.73 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++.+.+.|++|+|||||...+.+..
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999997643
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=95.54 E-value=0.0024 Score=50.14 Aligned_cols=21 Identities=33% Similarity=0.270 Sum_probs=19.0
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 30 i~~iiG~sGsGKSTLl~~i~G 50 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINF 50 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 489999999999999999954
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.48 E-value=0.0045 Score=45.84 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~ 49 (257)
.+.-|+|.|.+||||||+.+.|-
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999873
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.015 Score=45.33 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=22.2
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
.++.+.+.|++|+|||+|++++....
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 45679999999999999999997643
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.39 E-value=0.0029 Score=49.54 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=19.1
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++++|+.|+|||||++.|.+
T Consensus 32 i~~liG~nGaGKSTLl~~i~G 52 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITG 52 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHC
Confidence 479999999999999999955
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.37 E-value=0.0052 Score=47.66 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.5
Q ss_pred CceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+..+.|.|++|+|||+++..+...
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999998764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.31 E-value=0.0051 Score=47.17 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.1
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.+.+.+.|++|+|||||...|....+
T Consensus 35 ~~~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 35 LDHVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHhccC
Confidence 45799999999999999999976443
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.0075 Score=46.53 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=24.2
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
....+.+.+.|++|+||||++.++.+..+
T Consensus 49 ~~~~~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 49 SGVFRAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp TTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34556799999999999999999987554
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.26 E-value=0.0021 Score=49.95 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.2
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~iiG~sGsGKSTll~~i~g 53 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAG 53 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 589999999999999999955
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.21 E-value=0.0071 Score=45.71 Aligned_cols=26 Identities=31% Similarity=0.162 Sum_probs=22.6
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHH
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.++...|.+.|.+|+|||||.+.|..
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999999864
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.0067 Score=45.31 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+..|++++|++|+|||+++..|..
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHH
Confidence 345899999999999999999865
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.0062 Score=48.94 Aligned_cols=25 Identities=36% Similarity=0.179 Sum_probs=22.0
Q ss_pred CceeeEEEEecCCCChHHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..+..|+|.|.++|||||+.+.|..
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence 4578899999999999999998854
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.09 E-value=0.0067 Score=45.84 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
..|+|-|++||||||+...|...-+.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45888899999999999999876554
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.06 E-value=0.0044 Score=49.30 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=17.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+.+.|+|.|.+||||||+.++|..
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 456799999999999999998754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.05 E-value=0.0068 Score=46.24 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.4
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.+++.+.|++|+|||||+..|.+.
T Consensus 44 ~~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 44 SMPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999763
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.0069 Score=45.59 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
|.|+|.|++||||||+...|...-+.
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46888999999999999999876553
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.0079 Score=47.32 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...|+++||++|+|||+|+..|..
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCcEEECCCCCcHHHHHHHHHH
Confidence 345899999999999999999865
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.0051 Score=47.05 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.+.|+|-|..||||||+++.|...
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4577999999999999999988553
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.56 E-value=0.011 Score=45.83 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=21.4
Q ss_pred eeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.|+|.|+.|+|||||+.+++...+
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 5688999999999999999976543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.012 Score=44.76 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=21.5
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.+++.+.|++|+|||||+..++..
T Consensus 32 ~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 32 NLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCChHHHHHHHHHH
Confidence 4456899999999999999999764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.51 E-value=0.011 Score=44.20 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.8
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
-|+|-|..||||||++..|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.50 E-value=0.015 Score=46.02 Aligned_cols=26 Identities=12% Similarity=-0.088 Sum_probs=21.8
Q ss_pred CCceeeEEEEecCCCChHHHHHHHHH
Q psy12244 25 IARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 25 ~~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..++.-|+|.|.+|||||||...|..
T Consensus 24 ~~~P~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 24 NKCPLFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEeECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.38 E-value=0.011 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
++..|.++|++|+|||.|..+|...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhc
Confidence 3567999999999999999999764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.09 E-value=0.018 Score=44.83 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++.|.+.|++|+|||+|++++....+
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCceeEEecCCCCCchHHHHHHHHHhC
Confidence 456799999999999999999977543
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.05 E-value=0.018 Score=44.56 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
++.|.+.|++|+|||+|++++.+..
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEecCCCCChhHHHHHHHHHc
Confidence 4569999999999999999997644
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.99 E-value=0.016 Score=43.80 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=20.9
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+++.+.|++|+|||||+..|++.
T Consensus 35 ~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 35 LPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHH
Confidence 446889999999999999999764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.018 Score=43.63 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.+++.+.|++|+||||++..|...
T Consensus 35 ~~~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 35 NMPHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCchhhHHHHHHH
Confidence 3456899999999999999998653
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.76 E-value=0.011 Score=45.88 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=17.8
Q ss_pred EEEEecCCCChHHHHHHHHHh
Q psy12244 31 FSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.+.|++|+|||++++++...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 445699999999999999764
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.02 Score=43.65 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
|+-|+|=|..||||||+++.|...
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 567999999999999999999764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.58 E-value=0.018 Score=44.18 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+++.+.|++|+||||++.++...
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999764
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.37 E-value=0.029 Score=42.83 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.2
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
++.|+|.|..+|||||+.+.|....+.
T Consensus 1 M~iIgiTG~igSGKsTva~~l~e~~g~ 27 (241)
T d1deka_ 1 MKLIFLSGVKRSGKDTTADFIMSNYSA 27 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSCE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 356999999999999999998665443
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.33 E-value=0.024 Score=42.37 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.5
Q ss_pred eeEEEEecCCCChHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~ 49 (257)
.-|+|.|..||||||+.+.|-
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998773
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.31 E-value=0.026 Score=42.16 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=18.7
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
=|+|-|..||||||+++.|..
T Consensus 4 fIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999865
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.16 E-value=0.032 Score=43.58 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=23.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
.++.|.+.|++|+|||+|++++....+
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 456799999999999999999977544
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.027 Score=42.19 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=18.5
Q ss_pred eeEEEEecCCCChHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~ 49 (257)
+.|+|.|..||||||..+.|.
T Consensus 4 ~iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHH
Confidence 368999999999999998774
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.09 E-value=0.027 Score=47.47 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+.||.++|++|+|||-|.++|.+..
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred cccEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997644
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.02 E-value=0.029 Score=41.01 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.-|+++|++|+|||||.-.|+..
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc
Confidence 35889999999999999998763
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.00 E-value=0.024 Score=46.87 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.8
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..|+++||++|+|||+|+..|..
T Consensus 43 k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCeEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988754
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.034 Score=41.73 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=18.3
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
-|+|-|..||||||++..|..
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388889999999999998854
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.58 E-value=0.032 Score=40.76 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.4
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.-|.|.|++|+|||||...|+.
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999999865
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.48 E-value=0.04 Score=39.96 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.-|.|.|++|+|||||.-.|+..
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc
Confidence 35889999999999999888764
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.47 E-value=0.04 Score=45.10 Aligned_cols=27 Identities=41% Similarity=0.631 Sum_probs=22.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+.+.+++.|++|+|||++..+|....+
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345789999999999999999987554
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.46 E-value=0.012 Score=44.97 Aligned_cols=29 Identities=38% Similarity=0.595 Sum_probs=23.5
Q ss_pred eeeEeeecccchhhHHHHHHhhCCcccCC
Q psy12244 204 FSIIAHVDHGKSTLADRLLEMTGTVLSSG 232 (257)
Q Consensus 204 ~~~~G~v~~Gk~~~~~~i~~~~g~~~~~g 232 (257)
++++||+++||+|+.++++...+.+...+
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~ 36 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGSAVASREAG 36 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHSCC---
T ss_pred EEEEeCCCccHHHHHHHHHhhcchheecC
Confidence 88999999999999999999877665443
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.36 E-value=0.048 Score=42.73 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=21.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
....|+|+|..|.|||||...++...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhh
Confidence 34678999999999999999987643
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.20 E-value=0.039 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.068 Sum_probs=20.3
Q ss_pred eEEEEecCCCChHHHHHHHHHhc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
-|.+.|++|+||||++..++...
T Consensus 160 liLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 160 IILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHhhhh
Confidence 48899999999999999998743
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.20 E-value=0.05 Score=38.93 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.7
Q ss_pred eEEEEecCCCChHHHHHHHHHhcCc
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEMTGT 54 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~~~~ 54 (257)
.|.+-|.-|+|||||+..|+...+.
T Consensus 35 ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 35 MVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEecCCCccHHHHHHHHHhhccc
Confidence 5889999999999999999876553
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=92.08 E-value=0.0062 Score=44.84 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=17.7
Q ss_pred EEEEecCCCChHHHHHHHHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~ 50 (257)
.+|+|+.|+|||||+.+|..
T Consensus 27 tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999964
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.79 E-value=0.045 Score=44.83 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.++.++|++|+|||-|..+|...
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~~ 91 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAKH 91 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHhh
Confidence 4568999999999999999999654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.046 Score=40.24 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.4
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|.|++|+|||+|...|+..
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.65 E-value=0.035 Score=43.78 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=17.8
Q ss_pred EEEEecCCCChHHHHHHHHH
Q psy12244 31 FSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~ 50 (257)
-+++|+-|+||||++.+|..
T Consensus 27 nvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp EEEECCTTTCSTHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 37999999999999999854
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=91.18 E-value=0.049 Score=40.53 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=22.0
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+...+++.|++++|||.++++|+...
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~~l 77 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIHFI 77 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHHHh
Confidence 34568999999999999999997754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.96 E-value=0.051 Score=44.64 Aligned_cols=19 Identities=37% Similarity=0.401 Sum_probs=17.3
Q ss_pred EEEecCCCChHHHHHHHHH
Q psy12244 32 SIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 32 ~ivG~~~~GKStLi~~l~~ 50 (257)
+|+|+.|+|||+++.+|..
T Consensus 29 ~i~G~NGsGKS~ileAi~~ 47 (427)
T d1w1wa_ 29 SIIGPNGSGKSNMMDAISF 47 (427)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6999999999999999854
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=90.77 E-value=0.077 Score=42.73 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.7
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+..+|+|=|..|+||||+++.|...
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.72 E-value=0.08 Score=39.70 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.8
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+=|+|-|.-||||||+++.|...
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~~ 26 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYKK 26 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999988653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.51 E-value=0.041 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+|.++|++|+|||+|+.+|...
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~i 51 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAAL 51 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHHHh
Confidence 57999999999999999999654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.37 E-value=0.089 Score=42.01 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.0
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
-++.++|++|+|||.|...|...
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHhh
Confidence 36889999999999999998653
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=90.33 E-value=0.084 Score=40.79 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.7
Q ss_pred eeeEEEEecCCCChHHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
+++|+|.|..|+||||+.-.|..
T Consensus 1 mr~Iai~gKGGvGKTT~a~nLA~ 23 (269)
T d1cp2a_ 1 MRQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCcCCHHHHHHHHHH
Confidence 47899999999999999977643
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.99 E-value=0.082 Score=39.74 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.7
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+.|.|++|+|||+|...|+.
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998864
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=89.99 E-value=0.074 Score=42.79 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.9
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
...+|+|=|..|+||||+++.|..
T Consensus 3 ~~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 3 TLLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred CceEEEEECCcCCCHHHHHHHHHH
Confidence 456799999999999999999843
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=89.97 E-value=0.09 Score=42.36 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=22.1
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHh
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.+|+|=|..|+||||+++.|...
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred ceEEEEEECCccCCHHHHHHHHHHH
Confidence 4678999999999999999999654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.82 E-value=0.097 Score=39.63 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.6
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|.|++|+|||+|.-+++..
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998763
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.41 E-value=0.054 Score=40.33 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=21.3
Q ss_pred cceeeEeeecccchhhHHHHHHhh
Q psy12244 202 RNFSIIAHVDHGKSTLADRLLEMT 225 (257)
Q Consensus 202 ~~~~~~G~v~~Gk~~~~~~i~~~~ 225 (257)
.+++++|||++||+|+.++|+...
T Consensus 9 ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 9 VNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSCC
T ss_pred eEEEEEEccCCcHHHHHHHHHhhh
Confidence 579999999999999999998643
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=89.34 E-value=0.1 Score=43.26 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.6
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..+++.|+|.+|+|||+++..++.
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEeCCCCcHHHHHHHHHH
Confidence 456799999999999999987764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.20 E-value=0.053 Score=39.94 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=21.3
Q ss_pred hcceeeEeeecccchhhHHHHHHh
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
..+++++||+++||+|+.++|+..
T Consensus 5 ~inIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 5 EVNIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred cEEEEEEeccCCcHHHHHHHHHhh
Confidence 358999999999999999999863
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.90 E-value=0.12 Score=39.03 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.5
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|.|++|+|||+|..+++..
T Consensus 28 l~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 28 IILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999998764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=88.53 E-value=0.12 Score=39.99 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=18.3
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
-++|.|++|+|||+|+..+..
T Consensus 37 l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 477999999999999988864
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.46 E-value=0.15 Score=38.22 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHHHHHHh
Q psy12244 31 FSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 31 i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.|.|++|+|||-|+.++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999763
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.40 E-value=0.1 Score=40.51 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.8
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
-+.+.|++++|||+|.-.++..
T Consensus 56 itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHHHH
Confidence 5679999999999999887653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.39 E-value=0.13 Score=38.48 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=19.5
Q ss_pred eEEEEecCCCChHHHHHHHHHh
Q psy12244 30 NFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~~ 51 (257)
.+.|.|++|+|||+|...++..
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.96 E-value=0.16 Score=37.72 Aligned_cols=23 Identities=22% Similarity=0.145 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
+.+.+.|++|+||||+...+...
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~~ 47 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSRY 47 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHh
Confidence 34899999999999999988763
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=87.60 E-value=0.2 Score=38.83 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=22.3
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhcC
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMTG 53 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~~ 53 (257)
+...+.+.|+++.|||+|++.|....+
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344578999999999999999987554
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.40 E-value=0.18 Score=38.15 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.6
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+.+.|++|+||||++..+...
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~ 57 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKG 57 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeEEEECCCCCcHHHHHHHHHHH
Confidence 34889999999999999988653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.39 E-value=0.17 Score=37.62 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=17.9
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+.|.|++|+|||+|.-.++.
T Consensus 28 ~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 28 STLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999877653
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.21 E-value=0.18 Score=38.01 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.1
Q ss_pred eeEEEEecCCCChHHHHHHHHHh
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~~ 51 (257)
..+.|.|++|+|||+|.-+++..
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.22 E-value=0.2 Score=40.02 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=19.3
Q ss_pred eeeEEE-EecCCCChHHHHHHHHHh
Q psy12244 28 IRNFSI-IAHVDHGKSTLADRLLEM 51 (257)
Q Consensus 28 ~~~i~i-vG~~~~GKStLi~~l~~~ 51 (257)
++.+.+ .|++|+|||.|..+|...
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 445555 699999999999999764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=86.15 E-value=0.21 Score=38.34 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=26.1
Q ss_pred cCCCCCCCCCCCCCCCceeeEEEEecCCCChHHHHHHHHH
Q psy12244 11 AKPDSKATPYEDIPIARIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
..++..+.-+..+.. .. ...|.|++|+|||+|+-.|..
T Consensus 14 ~~~p~~d~li~G~~p-g~-~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 14 AAPPPLDYVLPNMVA-GT-VGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp SCCCCCCEEETTEET-TS-EEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHhCCccC-Cc-EEEEEeCCCCCHHHHHHHHHH
Confidence 344444555555543 32 466999999999999988764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=85.57 E-value=0.13 Score=37.09 Aligned_cols=25 Identities=44% Similarity=0.751 Sum_probs=21.3
Q ss_pred cceeeEeeecccchhhHHHHHHhhC
Q psy12244 202 RNFSIIAHVDHGKSTLADRLLEMTG 226 (257)
Q Consensus 202 ~~~~~~G~v~~Gk~~~~~~i~~~~g 226 (257)
.+++++|++++||+|+.++++...+
T Consensus 6 inIaiiG~~naGKSTL~n~L~~~~~ 30 (179)
T d1wb1a4 6 INLGIFGHIDHGKTTLSKVLTEIAS 30 (179)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC-
T ss_pred EEEEEEeCCCCcHHHHHHHHHHhcC
Confidence 4799999999999999999986443
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=85.39 E-value=0.26 Score=38.33 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.1
Q ss_pred eeeEEEEecCCCChHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRL 48 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l 48 (257)
+++|+|-|..|+||||+.-.|
T Consensus 2 Mr~IaisgKGGVGKTT~a~NL 22 (289)
T d2afhe1 2 MRQCAIYGKGGIGKSTTTQNL 22 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 467899999999999987765
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.18 E-value=0.28 Score=39.02 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.7
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
.+.++|++|+|||.|...|..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 678899999999999999865
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=83.41 E-value=0.28 Score=37.95 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=19.4
Q ss_pred CceeeEEEEecCCCChHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~ 49 (257)
+.++-|.+.|..|+||||+.-.|.
T Consensus 6 ~~p~~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 6 NIPPYLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCcChHHHHHHHHH
Confidence 345677889999999999877764
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=83.36 E-value=0.53 Score=31.82 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=18.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHH
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~ 50 (257)
.-....+.+++|+|||+++-.++.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~~ 30 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAYA 30 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 345678899999999998866554
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.10 E-value=0.39 Score=32.31 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=21.8
Q ss_pred ceeeEEEEecCCCChHHHHHHHHHhc
Q psy12244 27 RIRNFSIIAHVDHGKSTLADRLLEMT 52 (257)
Q Consensus 27 ~~~~i~ivG~~~~GKStLi~~l~~~~ 52 (257)
+=..|.+-|..++|||||.++|....
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~l 30 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLSTF 30 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999996543
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=82.38 E-value=0.44 Score=37.26 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.9
Q ss_pred eeEEEEecCCCChHHHHHHHHH
Q psy12244 29 RNFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 29 ~~i~ivG~~~~GKStLi~~l~~ 50 (257)
-+++|+|..++|||+|+..+..
T Consensus 44 Qr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 44 QRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CeeeEeCCCCCCHHHHHHHHHH
Confidence 4789999999999999998875
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=82.13 E-value=0.26 Score=35.71 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.9
Q ss_pred hcceeeEeeecccchhhHHHHHHh
Q psy12244 201 IRNFSIIAHVDHGKSTLADRLLEM 224 (257)
Q Consensus 201 ~~~~~~~G~v~~Gk~~~~~~i~~~ 224 (257)
...++++|+.++||+|+.+++...
T Consensus 23 ~~~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHhcCC
Confidence 346999999999999999999753
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.11 E-value=0.37 Score=37.34 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=17.7
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
-+.+.|++++|||+|.-.++.
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEecCCCcHHHHHHHHHHH
Confidence 467999999999999877654
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=81.92 E-value=0.47 Score=36.40 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=18.8
Q ss_pred CceeeEEEEecCCCChHHHHHHHH
Q psy12244 26 ARIRNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 26 ~~~~~i~ivG~~~~GKStLi~~l~ 49 (257)
...+.|++.|..|+||||+.-.|.
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345667788999999999876663
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=80.90 E-value=0.3 Score=37.89 Aligned_cols=18 Identities=17% Similarity=0.468 Sum_probs=14.2
Q ss_pred EEEEecCCCChHHH-HHHH
Q psy12244 31 FSIIAHVDHGKSTL-ADRL 48 (257)
Q Consensus 31 i~ivG~~~~GKStL-i~~l 48 (257)
+.|.|.+|+||||. +.++
T Consensus 17 ~lI~g~aGTGKTt~l~~rv 35 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNKI 35 (306)
T ss_dssp EEECCCTTSCHHHHHHHHH
T ss_pred EEEEeeCCccHHHHHHHHH
Confidence 67899999999965 4443
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=80.23 E-value=0.52 Score=38.09 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=17.7
Q ss_pred eeeEEEEecCCCChHHHHHHHH
Q psy12244 28 IRNFSIIAHVDHGKSTLADRLL 49 (257)
Q Consensus 28 ~~~i~ivG~~~~GKStLi~~l~ 49 (257)
.+..+|.|++|+||||++..++
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~l 184 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKLL 184 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHHH
Confidence 3567899999999999886543
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=80.23 E-value=0.42 Score=36.97 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=18.4
Q ss_pred eEEEEecCCCChHHHHHHHHH
Q psy12244 30 NFSIIAHVDHGKSTLADRLLE 50 (257)
Q Consensus 30 ~i~ivG~~~~GKStLi~~l~~ 50 (257)
-+-+.|++++|||+|.-.++.
T Consensus 59 itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEecCCccchHHHHHHHHH
Confidence 467999999999999988765
|