Psyllid ID: psy12250

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
MDPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKVSDQEKVAINHEASNLNVGQGM
cccccEEEcccccEEEEEccccccEEEEEEEEccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccccEEEEEcccccccccEEEEcccccccccccccccccHHcHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
cccccEEEcccccEEEEEEEcccccEEEEEEccHHHHHccccHHHHHHHHHHHccccHHHcccHHHHHHHHHcccccEEEEEEccccccccEEEEEccHHHEcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccHHHccccccc
mdpnflhiwprgtfmmialpnqdhswtvtlfmpfekfGLLGTARALLDFFdkyfpdaipliGAERLVADFFsrkaaplisikcnpyhkndkvlIIGDAAHamvpfygqgmnagfedccILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLfwmfprlwiplynavtfsrlrysscvqhkafqdkvsDQEKVAINHeasnlnvgqgm
MDPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKVSDQEKVAINheasnlnvgqgm
MDPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKVSDQEKVAINHEASNLNVGQGM
****FLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQ************************
**PNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKVSDQEKVAINHEASNLNVGQGM
MDPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKVSDQEKVAINHEASNLNVGQGM
*DPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKVSDQEKVAINHEASNLNV****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKVSDQEKVAINHEASNLNVGQGM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query235 2.2.26 [Sep-21-2011]
Q7Q6A7486 Kynurenine 3-monooxygenas yes N/A 0.910 0.440 0.663 3e-85
Q86PM2476 Kynurenine 3-monooxygenas N/A N/A 0.910 0.449 0.607 1e-78
B4MPK31204 Protein kintoun OS=Drosop N/A N/A 0.902 0.176 0.556 2e-69
Q1RLY6474 Kynurenine 3-monooxygenas yes N/A 0.910 0.451 0.551 6e-66
O15229486 Kynurenine 3-monooxygenas yes N/A 0.923 0.446 0.548 1e-65
A1Z746465 Kynurenine 3-monooxygenas yes N/A 0.902 0.455 0.560 1e-64
Q9MZS9471 Kynurenine 3-monooxygenas yes N/A 0.910 0.454 0.542 2e-64
Q91WN4479 Kynurenine 3-monooxygenas yes N/A 0.923 0.453 0.525 4e-62
O88867478 Kynurenine 3-monooxygenas yes N/A 0.923 0.453 0.525 5e-62
Q6DIZ8473 Kynurenine 3-monooxygenas yes N/A 0.910 0.452 0.537 7e-62
>sp|Q7Q6A7|KMO_ANOGA Kynurenine 3-monooxygenase OS=Anopheles gambiae GN=kh PE=2 SV=2 Back     alignment and function desciption
 Score =  314 bits (805), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 142/214 (66%), Positives = 166/214 (77%)

Query: 1   MDPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPL 60
           M  N+LHIWPRG FMMIALPNQD +WTVTLFMPF +F  +     LLDFF ++FPDAI L
Sbjct: 224 MPHNYLHIWPRGQFMMIALPNQDRTWTVTLFMPFTQFHSITDQGLLLDFFRQHFPDAIEL 283

Query: 61  IGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCIL 120
           IG ERLV DFF  KA PL+ IKC PYH   K LIIGDAAHAMVPFYGQGMNAGFEDC +L
Sbjct: 284 IGRERLVKDFFKTKAQPLVMIKCRPYHIGAKALIIGDAAHAMVPFYGQGMNAGFEDCSVL 343

Query: 121 QDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLF 180
            +L  QY  D  ++LP+F+E R  DA AICDLAMYNYIEMRDLVTK S+L RK+ D  LF
Sbjct: 344 TELFNQYGTDLARILPEFSEKRWEDAHAICDLAMYNYIEMRDLVTKRSYLLRKKLDELLF 403

Query: 181 WMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKV 214
           WM P  W+PLYN+V+FS +RYS C+ ++A+QDK+
Sbjct: 404 WMMPNTWVPLYNSVSFSHMRYSKCIANRAWQDKI 437
Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.
Anopheles gambiae (taxid: 7165)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 9
>sp|Q86PM2|KMO_AEDAE Kynurenine 3-monooxygenase OS=Aedes aegypti GN=kh PE=1 SV=2 Back     alignment and function description
>sp|B4MPK3|KTU_DROWI Protein kintoun OS=Drosophila willistoni GN=Ppi20 PE=3 SV=1 Back     alignment and function description
>sp|Q1RLY6|KMO_DANRE Kynurenine 3-monooxygenase OS=Danio rerio GN=kmo PE=2 SV=1 Back     alignment and function description
>sp|O15229|KMO_HUMAN Kynurenine 3-monooxygenase OS=Homo sapiens GN=KMO PE=1 SV=2 Back     alignment and function description
>sp|A1Z746|KMO_DROME Kynurenine 3-monooxygenase OS=Drosophila melanogaster GN=cn PE=2 SV=2 Back     alignment and function description
>sp|Q9MZS9|KMO_PIG Kynurenine 3-monooxygenase OS=Sus scrofa GN=KMO PE=2 SV=2 Back     alignment and function description
>sp|Q91WN4|KMO_MOUSE Kynurenine 3-monooxygenase OS=Mus musculus GN=Kmo PE=1 SV=1 Back     alignment and function description
>sp|O88867|KMO_RAT Kynurenine 3-monooxygenase OS=Rattus norvegicus GN=Kmo PE=1 SV=1 Back     alignment and function description
>sp|Q6DIZ8|KMO_XENTR Kynurenine 3-monooxygenase OS=Xenopus tropicalis GN=kmo PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
24414608 486 kynurenine 3-monooxygenase [Anopheles st 0.910 0.440 0.658 2e-83
58388029 486 AGAP005948-PA [Anopheles gambiae str. PE 0.910 0.440 0.663 2e-83
312373726 429 hypothetical protein AND_17066 [Anophele 0.906 0.496 0.657 4e-82
122935286 456 kynurenine 3-monooxygenase [Bombyx mori] 0.923 0.475 0.622 4e-79
91982077 456 kynurenine 3-monooxygenase [Bombyx mori] 0.923 0.475 0.622 4e-79
162952013 456 kynurenine 3-monooxygenase [Bombyx mori] 0.923 0.475 0.622 4e-79
122935288 456 kynurenine 3-monooxygenase [Bombyx mori] 0.923 0.475 0.622 4e-79
3298454 365 kynurenine 3-monooxygenase [Bombyx mori] 0.923 0.594 0.622 8e-79
170172432 466 kynurenine 3 hydroxylase [Haemaphysalis 0.910 0.459 0.621 1e-77
165909923 456 kynurenine 3-monooxygenase [Bombyx mori] 0.923 0.475 0.612 2e-77
>gi|24414608|gb|AAL40890.1| kynurenine 3-monooxygenase [Anopheles stephensi] Back     alignment and taxonomy information
 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 141/214 (65%), Positives = 165/214 (77%)

Query: 1   MDPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPL 60
           M  N+LHIWPRG FMMIALPNQD +WTVTLFMPF +F  +     L+DFF +YFPDAI L
Sbjct: 223 MPHNYLHIWPRGQFMMIALPNQDRTWTVTLFMPFTQFHSITDPGRLIDFFRQYFPDAIEL 282

Query: 61  IGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCIL 120
           IG ERL+ DFF  K  PL+ IKC PYH   K LIIGDAAHAMVPFYGQGMNAGFEDC +L
Sbjct: 283 IGRERLIKDFFKTKPQPLVMIKCRPYHVGSKALIIGDAAHAMVPFYGQGMNAGFEDCSVL 342

Query: 121 QDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLF 180
            DL  QY  D  ++LP+F+E R  DA AICDLAMYNYIEMRDLVTK S+L RK+ D  LF
Sbjct: 343 TDLFNQYGTDLTRILPEFSEKRWEDAHAICDLAMYNYIEMRDLVTKRSYLLRKKLDELLF 402

Query: 181 WMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKV 214
           WM P  W+PLYN+V+FS +RYS C+ ++A+QDK+
Sbjct: 403 WMLPNTWVPLYNSVSFSHMRYSKCIANRAWQDKI 436

Source: Anopheles stephensi

Species: Anopheles stephensi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|58388029|ref|XP_315983.2| AGAP005948-PA [Anopheles gambiae str. PEST] gi|74839748|sp|Q7Q6A7.2|KMO_ANOGA RecName: Full=Kynurenine 3-monooxygenase; AltName: Full=Kynurenine 3-hydroxylase gi|55238759|gb|EAA11712.2| AGAP005948-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312373726|gb|EFR21418.1| hypothetical protein AND_17066 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|122935286|gb|ABM68365.1| kynurenine 3-monooxygenase [Bombyx mori] Back     alignment and taxonomy information
>gi|91982077|gb|ABE68382.1| kynurenine 3-monooxygenase [Bombyx mori] Back     alignment and taxonomy information
>gi|162952013|ref|NP_001106135.1| kynurenine 3-monooxygenase [Bombyx mori] gi|15076608|dbj|BAB62416.1| kynurenine 3-monooxygenase [Bombyx mori] gi|15076614|dbj|BAB62419.1| kynurenine 3-monooxygenase [Bombyx mori] gi|122935294|gb|ABM68369.1| kynurenine 3-monooxygenase [Bombyx mori] Back     alignment and taxonomy information
>gi|122935288|gb|ABM68366.1| kynurenine 3-monooxygenase [Bombyx mori] Back     alignment and taxonomy information
>gi|3298454|dbj|BAA31513.1| kynurenine 3-monooxygenase [Bombyx mori] Back     alignment and taxonomy information
>gi|170172432|dbj|BAG12984.1| kynurenine 3 hydroxylase [Haemaphysalis longicornis] Back     alignment and taxonomy information
>gi|165909923|gb|ABY73874.1| kynurenine 3-monooxygenase [Bombyx mori] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
UNIPROTKB|Q7Q6A7486 kh "Kynurenine 3-monooxygenase 0.910 0.440 0.663 3e-78
UNIPROTKB|Q86PM2476 kh "Kynurenine 3-monooxygenase 0.910 0.449 0.607 1.2e-72
UNIPROTKB|F1NM78494 KMO "Uncharacterized protein" 0.910 0.433 0.556 6.9e-63
ZFIN|ZDB-GENE-030424-4474 kmo "kynurenine 3-monooxygenas 0.910 0.451 0.551 7.9e-62
UNIPROTKB|O15229486 KMO "Kynurenine 3-monooxygenas 0.910 0.440 0.556 1.3e-61
UNIPROTKB|E1BN59480 KMO "Uncharacterized protein" 0.910 0.445 0.556 1.6e-61
UNIPROTKB|I3LAL5478 KMO "Kynurenine 3-monooxygenas 0.910 0.447 0.542 7.1e-61
UNIPROTKB|Q9MZS9471 KMO "Kynurenine 3-monooxygenas 0.910 0.454 0.542 7.1e-61
FB|FBgn0000337465 cn "cinnabar" [Drosophila mela 0.902 0.455 0.560 1.9e-60
UNIPROTKB|E1B2G6477 KMO "Kynurenine 3-monooxygenas 0.910 0.448 0.528 1.3e-59
UNIPROTKB|Q7Q6A7 kh "Kynurenine 3-monooxygenase" [Anopheles gambiae (taxid:7165)] Back     alignment and assigned GO terms
 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 142/214 (66%), Positives = 166/214 (77%)

Query:     1 MDPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPL 60
             M  N+LHIWPRG FMMIALPNQD +WTVTLFMPF +F  +     LLDFF ++FPDAI L
Sbjct:   224 MPHNYLHIWPRGQFMMIALPNQDRTWTVTLFMPFTQFHSITDQGLLLDFFRQHFPDAIEL 283

Query:    61 IGAERLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCIL 120
             IG ERLV DFF  KA PL+ IKC PYH   K LIIGDAAHAMVPFYGQGMNAGFEDC +L
Sbjct:   284 IGRERLVKDFFKTKAQPLVMIKCRPYHIGAKALIIGDAAHAMVPFYGQGMNAGFEDCSVL 343

Query:   121 QDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLF 180
              +L  QY  D  ++LP+F+E R  DA AICDLAMYNYIEMRDLVTK S+L RK+ D  LF
Sbjct:   344 TELFNQYGTDLARILPEFSEKRWEDAHAICDLAMYNYIEMRDLVTKRSYLLRKKLDELLF 403

Query:   181 WMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKV 214
             WM P  W+PLYN+V+FS +RYS C+ ++A+QDK+
Sbjct:   404 WMMPNTWVPLYNSVSFSHMRYSKCIANRAWQDKI 437
GO:0004502 "kynurenine 3-monooxygenase activity" evidence=ISS
GO:0005741 "mitochondrial outer membrane" evidence=ISS
GO:0019674 "NAD metabolic process" evidence=ISS
UNIPROTKB|Q86PM2 kh "Kynurenine 3-monooxygenase" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
UNIPROTKB|F1NM78 KMO "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030424-4 kmo "kynurenine 3-monooxygenase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O15229 KMO "Kynurenine 3-monooxygenase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BN59 KMO "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LAL5 KMO "Kynurenine 3-monooxygenase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9MZS9 KMO "Kynurenine 3-monooxygenase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0000337 cn "cinnabar" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1B2G6 KMO "Kynurenine 3-monooxygenase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A1Z746KMO_DROME1, ., 1, 4, ., 1, 3, ., 90.56070.90210.4559yesN/A
Q9MZS9KMO_PIG1, ., 1, 4, ., 1, 3, ., 90.54200.91060.4543yesN/A
Q1RLY6KMO_DANRE1, ., 1, 4, ., 1, 3, ., 90.55140.91060.4514yesN/A
Q91WN4KMO_MOUSE1, ., 1, 4, ., 1, 3, ., 90.52530.92340.4530yesN/A
O88867KMO_RAT1, ., 1, 4, ., 1, 3, ., 90.52530.92340.4539yesN/A
Q7Q6A7KMO_ANOGA1, ., 1, 4, ., 1, 3, ., 90.66350.91060.4403yesN/A
Q6DIZ8KMO_XENTR1, ., 1, 4, ., 1, 3, ., 90.53730.91060.4524yesN/A
O15229KMO_HUMAN1, ., 1, 4, ., 1, 3, ., 90.54830.92340.4465yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
COG0654387 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox 8e-13
PRK06183500 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr 3e-07
pfam01494349 pfam01494, FAD_binding_3, FAD binding domain 4e-07
TIGR01984382 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy 1e-06
TIGR01988387 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd 2e-06
PRK07045388 PRK07045, PRK07045, putative monooxygenase; Review 1e-05
PRK07608388 PRK07608, PRK07608, ubiquinone biosynthesis hydrox 2e-05
TIGR03219414 TIGR03219, salicylate_mono, salicylate 1-monooxyge 5e-05
PRK06126545 PRK06126, PRK06126, hypothetical protein; Provisio 5e-05
PRK06753373 PRK06753, PRK06753, hypothetical protein; Provisio 1e-04
PRK08773392 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methox 2e-04
PRK08849384 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methox 2e-04
PRK05714405 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methox 4e-04
TIGR01989437 TIGR01989, COQ6, ubiquinone biosynthesis monooxyge 5e-04
PRK07364415 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h 8e-04
PRK06185407 PRK06185, PRK06185, hypothetical protein; Provisio 9e-04
PRK06475400 PRK06475, PRK06475, salicylate hydroxylase; Provis 0.001
PRK06834488 PRK06834, PRK06834, hypothetical protein; Provisio 0.003
PRK06617374 PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl h 0.003
PRK08020391 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1, 0.003
PRK07494388 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h 0.004
PRK07333403 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl h 0.004
PRK06847375 PRK06847, PRK06847, hypothetical protein; Provisio 0.004
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information 
 Score = 66.7 bits (163), Expect = 8e-13
 Identities = 42/186 (22%), Positives = 67/186 (36%), Gaps = 12/186 (6%)

Query: 5   FLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLLGTARALLDFFDKYFPDAIPLIGAE 64
                  G F ++ LP+   S   +L     +     +    L    +   +  PL G  
Sbjct: 198 GERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDPL-GRV 256

Query: 65  RLVADFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLM 124
            LV+   +    PL       Y +  +V++IGDAAHAM P  GQG N   ED   L + +
Sbjct: 257 TLVSSRSAF---PLSLRVAERYRR-GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEAL 312

Query: 125 IQYDEDFG--KVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWM 182
                       L  +   R+  AEAI  L+      +  L +     + +   +    +
Sbjct: 313 AAAPRPGADAAALAAYEARRRPRAEAIQKLSR----ALGRLFSADG-PFARFLRNLGLRL 367

Query: 183 FPRLWI 188
             RL  
Sbjct: 368 LDRLPP 373

Length = 387
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Back     alignment and domain information
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain Back     alignment and domain information
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed Back     alignment and domain information
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional Back     alignment and domain information
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase Back     alignment and domain information
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Back     alignment and domain information
>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|168201 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6 Back     alignment and domain information
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|168629 PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Back     alignment and domain information
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 235
KOG2614|consensus420 99.96
PRK06475400 salicylate hydroxylase; Provisional 99.9
PLN02985514 squalene monooxygenase 99.88
TIGR03219414 salicylate_mono salicylate 1-monooxygenase. Member 99.88
PRK08163396 salicylate hydroxylase; Provisional 99.88
PRK07588391 hypothetical protein; Provisional 99.87
PRK06126545 hypothetical protein; Provisional 99.86
PRK08849384 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.86
PRK06847375 hypothetical protein; Provisional 99.86
PRK07236386 hypothetical protein; Provisional 99.85
PRK08243392 4-hydroxybenzoate 3-monooxygenase; Validated 99.85
PRK06183 538 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va 99.85
COG0654387 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and 99.84
PRK07045388 putative monooxygenase; Reviewed 99.84
PRK06185407 hypothetical protein; Provisional 99.84
PRK08850405 2-octaprenyl-6-methoxyphenol hydroxylase; Validate 99.84
PRK06834488 hypothetical protein; Provisional 99.83
PRK07364415 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.83
PRK06184502 hypothetical protein; Provisional 99.83
PRK06996398 hypothetical protein; Provisional 99.83
PRK06617374 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.83
PRK08013400 oxidoreductase; Provisional 99.83
PRK05714405 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.83
PRK05868372 hypothetical protein; Validated 99.83
PRK09126392 hypothetical protein; Provisional 99.82
PRK08244493 hypothetical protein; Provisional 99.82
PRK07494388 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 99.82
PTZ00367567 squalene epoxidase; Provisional 99.82
PRK08773392 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.82
TIGR02360390 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. 99.82
PRK07608388 ubiquinone biosynthesis hydroxylase family protein 99.82
PRK07538413 hypothetical protein; Provisional 99.82
PRK06753373 hypothetical protein; Provisional 99.81
PLN02927 668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.81
TIGR01988385 Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub 99.8
PRK07333403 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 99.8
PRK08020391 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin 99.8
PRK08132 547 FAD-dependent oxidoreductase; Provisional 99.8
TIGR01984382 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T 99.79
TIGR01989437 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T 99.79
PRK08294 634 phenol 2-monooxygenase; Provisional 99.78
PF01494356 FAD_binding_3: FAD binding domain; InterPro: IPR00 99.78
PRK05732395 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.78
PRK07190487 hypothetical protein; Provisional 99.76
PRK08255 765 salicylyl-CoA 5-hydroxylase; Reviewed 99.72
PF08491276 SE: Squalene epoxidase; InterPro: IPR013698 This d 99.67
TIGR02032295 GG-red-SF geranylgeranyl reductase family. This mo 99.4
TIGR02023388 BchP-ChlP geranylgeranyl reductase. This model rep 99.24
KOG1298|consensus509 99.13
PLN00093450 geranylgeranyl diphosphate reductase; Provisional 99.1
TIGR02028398 ChlP geranylgeranyl reductase. This model represen 99.07
TIGR01790388 carotene-cycl lycopene cyclase family protein. Thi 99.03
KOG3855|consensus481 98.87
PRK11445351 putative oxidoreductase; Provisional 98.86
TIGR01789370 lycopene_cycl lycopene cyclase. This model represe 98.85
COG0644396 FixC Dehydrogenases (flavoproteins) [Energy produc 98.56
PRK10015429 oxidoreductase; Provisional 98.41
PRK10157428 putative oxidoreductase FixC; Provisional 98.33
PF04820454 Trp_halogenase: Tryptophan halogenase; InterPro: I 97.98
PLN02697529 lycopene epsilon cyclase 97.73
PLN02463447 lycopene beta cyclase 96.58
PF05834374 Lycopene_cycl: Lycopene cyclase protein; InterPro: 96.57
>KOG2614|consensus Back     alignment and domain information 
Probab=99.96  E-value=2.2e-30  Score=223.62  Aligned_cols=206  Identities=38%  Similarity=0.630  Sum_probs=179.7

Q ss_pred             CCCcEEEccCCCeEEEEeecCCceEEEEEEeeCCccCCC-CCHHHHHHHHhhhCCCccccccchhhhhh-hhcCCCCccc
Q psy12250          2 DPNFLHIWPRGTFMMIALPNQDHSWTVTLFMPFEKFGLL-GTARALLDFFDKYFPDAIPLIGAERLVAD-FFSRKAAPLI   79 (235)
Q Consensus         2 ~~~~~~~w~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~i~~~~~~~~-~~~~~~~~l~   79 (235)
                      .++++|.|+++.++.++|..-+..++++++.+.+.++.. ....++.+++.+.+|++.+++.....+.+ +..+++|++.
T Consensus       202 ~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i  281 (420)
T KOG2614|consen  202 YGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLI  281 (420)
T ss_pred             cCCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCee
Confidence            467899999999999999999999999998887766655 47788889999989998888876555555 6677788887


Q ss_pred             eeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q psy12250         80 SIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIE  159 (235)
Q Consensus        80 ~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~  159 (235)
                      ...|.    +++|||+|||||+|.|+.|||+|+||||+.+|+++|+++..+++.+++.|++  .+...++.+.+..+|..
T Consensus       282 ~~~~s----~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~--~~e~~~~ie~a~~~Y~~  355 (420)
T KOG2614|consen  282 SVKCS----PGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSR--ENESHAIIELAMYSYKE  355 (420)
T ss_pred             eeccC----CCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhccccceec--ccchhHHHHHHHHHHHH
Confidence            76663    5699999999999999999999999999999999999997779999999986  77788889999999988


Q ss_pred             hhhhcCChHHHHHHHHHHHHHHhCCCCcccccceEEecCCCHHHHHHHhhHHHHHHHHh
Q psy12250        160 MRDLVTKSSFLWRKRFDSFLFWMFPRLWIPLYNAVTFSRLRYSSCVQHKAFQDKVSDQE  218 (235)
Q Consensus       160 ~~~~~~~~~~~~r~~l~~~l~~~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~  218 (235)
                      ++     ..+.+|..+...+..++|..|.|.|.+..|++.+|++++++..+|+++++-.
T Consensus       356 ~r-----~~r~~rl~~~~~l~gi~~~s~~~l~~m~~F~d~~ys~~l~~~~~~~~~~~~g  409 (420)
T KOG2614|consen  356 ER-----WRRLLRLKVDAYLVGILPQSFGPLYLMVSFRDIIYSEALERLGIKKKILNDG  409 (420)
T ss_pred             HH-----HHHHhhhhhhheeeEeccccccchhhccchhhhhHHHHHHHHHhhhhhhccc
Confidence            76     4567888999999999999999999999999999999999999999988653

>PRK06475 salicylate hydroxylase; Provisional Back     alignment and domain information
>PLN02985 squalene monooxygenase Back     alignment and domain information
>TIGR03219 salicylate_mono salicylate 1-monooxygenase Back     alignment and domain information
>PRK08163 salicylate hydroxylase; Provisional Back     alignment and domain information
>PRK07588 hypothetical protein; Provisional Back     alignment and domain information
>PRK06126 hypothetical protein; Provisional Back     alignment and domain information
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK06847 hypothetical protein; Provisional Back     alignment and domain information
>PRK07236 hypothetical protein; Provisional Back     alignment and domain information
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated Back     alignment and domain information
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Back     alignment and domain information
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information
>PRK07045 putative monooxygenase; Reviewed Back     alignment and domain information
>PRK06185 hypothetical protein; Provisional Back     alignment and domain information
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Back     alignment and domain information
>PRK06834 hypothetical protein; Provisional Back     alignment and domain information
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK06184 hypothetical protein; Provisional Back     alignment and domain information
>PRK06996 hypothetical protein; Provisional Back     alignment and domain information
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK08013 oxidoreductase; Provisional Back     alignment and domain information
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK05868 hypothetical protein; Validated Back     alignment and domain information
>PRK09126 hypothetical protein; Provisional Back     alignment and domain information
>PRK08244 hypothetical protein; Provisional Back     alignment and domain information
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PTZ00367 squalene epoxidase; Provisional Back     alignment and domain information
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Back     alignment and domain information
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase Back     alignment and domain information
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional Back     alignment and domain information
>PRK07538 hypothetical protein; Provisional Back     alignment and domain information
>PRK06753 hypothetical protein; Provisional Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Back     alignment and domain information
>PRK08132 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 Back     alignment and domain information
>PRK08294 phenol 2-monooxygenase; Provisional Back     alignment and domain information
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways Back     alignment and domain information
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK07190 hypothetical protein; Provisional Back     alignment and domain information
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed Back     alignment and domain information
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria Back     alignment and domain information
>TIGR02032 GG-red-SF geranylgeranyl reductase family Back     alignment and domain information
>TIGR02023 BchP-ChlP geranylgeranyl reductase Back     alignment and domain information
>KOG1298|consensus Back     alignment and domain information
>PLN00093 geranylgeranyl diphosphate reductase; Provisional Back     alignment and domain information
>TIGR02028 ChlP geranylgeranyl reductase Back     alignment and domain information
>TIGR01790 carotene-cycl lycopene cyclase family protein Back     alignment and domain information
>KOG3855|consensus Back     alignment and domain information
>PRK11445 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR01789 lycopene_cycl lycopene cyclase Back     alignment and domain information
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] Back     alignment and domain information
>PRK10015 oxidoreductase; Provisional Back     alignment and domain information
>PRK10157 putative oxidoreductase FixC; Provisional Back     alignment and domain information
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan Back     alignment and domain information
>PLN02697 lycopene epsilon cyclase Back     alignment and domain information
>PLN02463 lycopene beta cyclase Back     alignment and domain information
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
3v3n_A378 Crystal Structure Of Tetx2 T280a: An Adaptive Mutan 1e-04
4a6n_A398 Structure Of The Tetracycline Degrading Monooxygena 1e-04
2xdo_A398 Structure Of The Tetracycline Degrading Monooxygena 1e-04
2y6r_A398 Structure Of The Tetx Monooxygenase In Complex With 1e-04
1bgn_A394 P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cy 4e-04
1cj2_A391 Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase 6e-04
1cj4_A392 Mutant Q34t Of Para-hydroxybenzoate Hydroxylase Len 6e-04
1cj3_A392 Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase 7e-04
1pbb_A394 Crystal Structures Of Wild-type P-hydroxybenzoate H 7e-04
1bgj_A394 P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cy 7e-04
1cc6_A394 Phe161 And Arg166 Variants Of P-Hydroxybenzoate Hyd 7e-04
1cc4_A394 Phe161 And Arg166 Variants Of P-Hydroxybenzoate Hyd 7e-04
1bkw_A394 P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cy 7e-04
1pbf_A394 Crystal Structures Of Wild-type P-hydroxybenzoate H 7e-04
1bf3_A394 P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cy 7e-04
1pbe_A394 Crystal Structure Of The P-Hydroxybenzoate Hydroxyl 8e-04
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In Complex With Minocycline Length = 378 Back     alignment and structure 
Iteration: 1

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 92  VLIIGDAAHAMVPFYGQGMNAGFEDCCILQD 122
           + +IGDAAH M PF GQG+N+G  D  IL D
Sbjct: 296 ITMIGDAAHLMPPFAGQGVNSGLVDALILSD 326
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx In Complex With Tigecycline Length = 398 Back     alignment and structure
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx2 From Bacteroides Thetaiotaomicron Length = 398 Back     alignment and structure
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The Substrate 7-Chlortetracycline Length = 398 Back     alignment and structure
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116 Replaced By Ser (C116s) And Arg 269 Replaced By Thr (R269t), In Complex With Fad And 4-Hydroxybenzoic Acid Length = 394 Back     alignment and structure
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase Length = 391 Back     alignment and structure
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase Length = 392 Back     alignment and structure
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase Length = 392 Back     alignment and structure
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate Hydroxylase Complexed With 4-aminobenzoate, 2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And Of The Try222ala Mutant, Complexed With 2- Hydroxy-4-aminobenzoate. Evidence For A Proton Channel And A New Binding Mode Of The Flavin Ring Length = 394 Back     alignment and structure
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116 Replaced By Ser (c116s) And His 162 Replaced By Arg (h162r), In Complex With Fad And 4-hydroxybenzoic Acid Length = 394 Back     alignment and structure
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate Hydroxylase. Implications For Nadph Recognition And Structural Stability Length = 394 Back     alignment and structure
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate Hydroxylase. Implications For Nadph Recognition And Structural Stability Length = 394 Back     alignment and structure
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116 Replaced By Ser (c116s) And Arg44 Replaced By Lys (r44k), In Complex With Fad And 4-hydroxybenzoic Acid Length = 394 Back     alignment and structure
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate Hydroxylase Complexed With 4-aminobenzoate, 2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And Of The Try222ala Mutant, Complexed With 2- Hydroxy-4-aminobenzoate. Evidence For A Proton Channel And A New Binding Mode Of The Flavin Ring Length = 394 Back     alignment and structure
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116 Replaced By Ser (C116s) And Arg 42 Replaced By Lys (R42k), In Complex With Fad And 4-Hydroxybenzoic Acid Length = 394 Back     alignment and structure
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate Hydroxylase-Substrate Complex Refined At 1.9 Angstroms Resolution. Analysis Of The Enzyme- Substrate And Enzyme-Product Complexes Length = 394 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 5e-36
3c4a_A381 Probable tryptophan hydroxylase VIOD; alpha-beta p 1e-11
3ihm_A430 Styrene monooxygenase A; rossman fold, anti-parall 3e-09
3alj_A379 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; 1e-08
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 4e-08
1pn0_A 665 Phenol 2-monooxygenase; two dimers, TLS refinement 8e-08
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 9e-08
3i3l_A 591 Alkylhalidase CMLS; flavin-dependent halogenase, c 9e-08
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 4e-07
2x3n_A399 Probable FAD-dependent monooxygenase; oxidoreducta 4e-07
2qa2_A499 CABE, polyketide oxygenase CABE; FAD, angucycline, 7e-07
2r0c_A549 REBC; flavin adenine dinucleotide, monooxygenase, 2e-06
3ihg_A535 RDME; flavoenzyme, anthracycline, polyketide biosy 2e-06
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 3e-06
3fmw_A 570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 3e-06
2qa1_A500 PGAE, polyketide oxygenase PGAE; FAD, angucycline, 4e-06
2dkh_A 639 3-hydroxybenzoate hydroxylase; flavoprotein, monoo 6e-06
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 3e-05
3e1t_A512 Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro 7e-05
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398 Back     alignment and structure
 Score =  130 bits (328), Expect = 5e-36
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 16/186 (8%)

Query: 1   MDPNFLHIWPRGTFMMIALPNQDHS--WTVTLFMPFE----KFGLLGTARALLDFFDKYF 54
           +      +      ++ A PN + +  + ++   P E             +++DF  K F
Sbjct: 218 LCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEF 277

Query: 55  PDAIPLIGAERLVA---DFFSRKAAPLISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMN 111
            D       + L+     F           K     +   + +IGDAAH M PF GQG+N
Sbjct: 278 SDWDERY--KELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVN 335

Query: 112 AGFEDCCILQD-LMIQYDEDFGKVLPKFTEVRQHDAEAICDLAMYNYIEMRDLVTKSSFL 170
           +G  D  IL D L         + +  + +      +   + +  N IEM        F 
Sbjct: 336 SGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFK----PDFT 391

Query: 171 WRKRFD 176
           +++  +
Sbjct: 392 FQQLLN 397
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381 Back     alignment and structure
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430 Back     alignment and structure
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379 Back     alignment and structure
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407 Back     alignment and structure
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665 Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394 Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591 Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397 Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399 Back     alignment and structure
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499 Back     alignment and structure
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549 Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535 Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410 Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570 Back     alignment and structure
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500 Back     alignment and structure
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639 Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421 Back     alignment and structure
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
4hb9_A412 Similarities with probable monooxygenase; flavin, 99.84
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 99.84
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 99.83
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 99.83
2qa2_A499 CABE, polyketide oxygenase CABE; FAD, angucycline, 99.83
2qa1_A500 PGAE, polyketide oxygenase PGAE; FAD, angucycline, 99.82
2r0c_A549 REBC; flavin adenine dinucleotide, monooxygenase, 99.8
1pn0_A 665 Phenol 2-monooxygenase; two dimers, TLS refinement 99.8
2x3n_A399 Probable FAD-dependent monooxygenase; oxidoreducta 99.79
3fmw_A 570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 99.78
3c4a_A381 Probable tryptophan hydroxylase VIOD; alpha-beta p 99.78
3ihg_A535 RDME; flavoenzyme, anthracycline, polyketide biosy 99.78
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 99.77
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 99.76
3alj_A379 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; 99.74
2dkh_A 639 3-hydroxybenzoate hydroxylase; flavoprotein, monoo 99.74
3ihm_A430 Styrene monooxygenase A; rossman fold, anti-parall 99.7
3i3l_A 591 Alkylhalidase CMLS; flavin-dependent halogenase, c 99.66
3atr_A453 Conserved archaeal protein; saturating double bond 99.65
3e1t_A512 Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro 99.64
3oz2_A397 Digeranylgeranylglycerophospholipid reductase; str 99.63
3cgv_A397 Geranylgeranyl reductase related protein; NP_39399 99.6
2gmh_A584 Electron transfer flavoprotein-ubiquinone oxidored 99.55
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 99.5
2pyx_A526 Tryptophan halogenase; structural genomics, JOI fo 99.49
2aqj_A538 Tryptophan halogenase, pRNA; flavin-dependent halo 99.41
2weu_A511 Tryptophan 5-halogenase; regioselectivity, antifun 99.38
2e4g_A550 Tryptophan halogenase; flavin-binding, rebeccamyci 99.35
2bry_A497 NEDD9 interacting protein with calponin homology a 98.75
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 96.61
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 96.56
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} Back     alignment and structure
Probab=99.84  E-value=5.1e-21  Score=167.84  Aligned_cols=77  Identities=22%  Similarity=0.437  Sum_probs=70.0

Q ss_pred             cCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q psy12250         83 CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY---DEDFGKVLPKFTEVRQHDAEAICDLAMYNYIE  159 (235)
Q Consensus        83 ~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~---~~~~~~al~~Y~~~R~~~~~~~~~~s~~~~~~  159 (235)
                      ..+|. .|||+|||||||+|+|++|||+|+||+||.+|+++|...   ..+++.+|+.|+++|++++..+++.|+.+...
T Consensus       305 ~~~~~-~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~~~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~~  383 (412)
T 4hb9_A          305 LLPWK-SSTVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASGHEELVKAISDYEQQMRAYANEIVGISLRSAQN  383 (412)
T ss_dssp             CCCCC-CCSEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccc-ccCEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34686 899999999999999999999999999999999999986   45789999999999999999999999987654


Q ss_pred             h
Q psy12250        160 M  160 (235)
Q Consensus       160 ~  160 (235)
                      +
T Consensus       384 ~  384 (412)
T 4hb9_A          384 A  384 (412)
T ss_dssp             H
T ss_pred             H
Confidence            3
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Back     alignment and structure
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Back     alignment and structure
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Back     alignment and structure
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Back     alignment and structure
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Back     alignment and structure
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Back     alignment and structure
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Back     alignment and structure
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Back     alignment and structure
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Back     alignment and structure
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Back     alignment and structure
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Back     alignment and structure
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} Back     alignment and structure
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Back     alignment and structure
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} Back     alignment and structure
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* Back     alignment and structure
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Back     alignment and structure
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Back     alignment and structure
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 235
d3c96a1288 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps 9e-06
d1pn0a1360 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So 1e-05
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.2 bits (100), Expect = 9e-06
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 83  CNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQYDEDFGKVLPKFTEVR 142
             P+    ++ ++GDAAH M P    G +    D   L    +  + D    L ++ E R
Sbjct: 182 PLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAA-LARNADVAAALREYEEAR 240

Query: 143 QHDAEAICDLAMYNYIEMRDLVTKSSFLWRKRFDSFLFWMFPRL 186
           +  A  I         E     ++     +    + L  +    
Sbjct: 241 RPTANKIILANREREKEEWAAASRP----KTEKSAALEAITGSY 280
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
d1pn0a1360 Phenol hydroxylase {Soil-living yeast (Trichosporo 99.71
d3c96a1288 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 99.39
d2voua1265 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 97.93
d1k0ia1292 p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a 97.86
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 97.54
d2voua2128 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 97.17
d2gmha1380 Electron transfer flavoprotein-ubiquinone oxidored 96.86
d3c96a2111 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 96.71
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.71  E-value=4.9e-18  Score=143.86  Aligned_cols=83  Identities=28%  Similarity=0.299  Sum_probs=70.8

Q ss_pred             ceeecCCcccCCcEEEEccCccccCchhhhhhhhhhhhHHHHHHHHHhc--ccCHHHHHHHHHHHhHHHHHHHHHHHHHh
Q psy12250         79 ISIKCNPYHKNDKVLIIGDAAHAMVPFYGQGMNAGFEDCCILQDLMIQY--DEDFGKVLPKFTEVRQHDAEAICDLAMYN  156 (235)
Q Consensus        79 ~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aleDa~~La~~L~~~--~~~~~~al~~Y~~~R~~~~~~~~~~s~~~  156 (235)
                      ......+|+..|||+|||||||+|+|+.|||+|+||+||.+|+++|...  +...+.+|+.|+++|++++..++..++..
T Consensus       238 ~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~  317 (360)
T d1pn0a1         238 EMIVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQF  317 (360)
T ss_dssp             CCEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhheeecCcEEEccCcccccccccCCCCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344557765799999999999999999999999999999999999876  34557889999999999999999998876


Q ss_pred             HHHhh
Q psy12250        157 YIEMR  161 (235)
Q Consensus       157 ~~~~~  161 (235)
                      ...+.
T Consensus       318 ~~~~~  322 (360)
T d1pn0a1         318 SRLFS  322 (360)
T ss_dssp             HHHHH
T ss_pred             HHHHC
Confidence            65544
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure