Psyllid ID: psy12271

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MSSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccccccHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSSHFAFSYGVFVgigaglsfppgifIVTSYFLKYRGLANGIaisgsalgsiflpPFLRYLLESYgyrrdtekvrekgeeeeeeeEEEKEEEEEK
Flexible Loop (DISEMBL)
MSSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYgyrrdtekvrekgeeeeeeeeeekeeeeek
Low Complexity Region (SEG)
MSSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTEKVRekgeeeeeeeeeekeeeeek
Disordered region (IsUnstruct)
****FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR***************************
Disordered Region (DISOPRED)
MSSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTEKVREKG*****************
Disordered Region (DISEMBL)
MSSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRD*************************
Disordered Region (DISPRO)
*SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE*VREK******************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q8BGC3	486	Monocarboxylate transport	yes	N/A	0.684	0.133	0.4	3e-09
Q7RTX9	510	Monocarboxylate transport	yes	N/A	0.684	0.127	0.363	3e-09
Q6ZSM3	486	Monocarboxylate transport	no	N/A	0.684	0.133	0.384	7e-09
Q8K1C7	512	Monocarboxylate transport	no	N/A	0.642	0.119	0.360	1e-08
Q6P2X9	473	Monocarboxylate transport	yes	N/A	0.684	0.137	0.384	2e-08
Q6GM59	460	Monocarboxylate transport	N/A	N/A	0.684	0.141	0.384	2e-08
Q503M4	477	Monocarboxylate transport	no	N/A	0.642	0.127	0.393	1e-07
G5E8K6	468	Monocarboxylate transport	no	N/A	0.694	0.141	0.393	1e-07
Q7RTY0	426	Monocarboxylate transport	no	N/A	0.694	0.154	0.363	1e-07
O15375	505	Monocarboxylate transport	no	N/A	0.694	0.130	0.393	1e-06

>sp|Q8BGC3|MOT12_MOUSE Monocarboxylate transporter 12 OS=Mus musculus GN=Slc16a12 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query: 4   HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
           H   S GV  G+G  L + P I +V  YF + + LA GIA+SGS +G+  L P ++ L+E
Sbjct: 110 HLYLSLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLIE 169

Query: 64  SYGYR 68
            + +R
Sbjct: 170 QFSWR 174

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates.
Mus musculus (taxid: 10090)

>sp|Q7RTX9|MOT14_HUMAN Monocarboxylate transporter 14 OS=Homo sapiens GN=SLC16A14 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 4   HFAF-SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62
           H+ F ++GV  G+G+G+++ P + +V  YF K R LA G++ +G+  G+  +   L+YL 
Sbjct: 124 HYLFITFGVAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLC 183

Query: 63  ESYGYR 68
             YG+R
Sbjct: 184 AEYGWR 189

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates.

Homo sapiens (taxid: 9606)

>sp|Q6ZSM3|MOT12_HUMAN Monocarboxylate transporter 12 OS=Homo sapiens GN=SLC16A12 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query: 4   HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
           H   + GV  G+G  L + P I +V  YF + + LA GIA+SGS +G+  L P ++ L+E
Sbjct: 110 HLYLTLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLIE 169

Query: 64  SYGYR 68
            + +R
Sbjct: 170 QFSWR 174

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates.

Homo sapiens (taxid: 9606)

>sp|Q8K1C7|MOT14_MOUSE Monocarboxylate transporter 14 OS=Mus musculus GN=Slc16a14 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 8   SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGY 67
           ++GV  G+G+G+++ P + +V  YF K R LA G++ +G+  G+  +   L+YL   YG+
Sbjct: 131 TFGVAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGW 190

Query: 68  R 68
           R
Sbjct: 191 R 191

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates.

Mus musculus (taxid: 10090)

>sp|Q6P2X9|MOT12_XENTR Monocarboxylate transporter 12 OS=Xenopus tropicalis GN=slc16a12 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query: 4   HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
           +   + GV  G+G  L + P I +V  YF K + LA GIA+SGS +G+  L P ++ L+E
Sbjct: 110 YLYLTLGVLTGLGFALCYSPAIAMVGKYFEKRKALAYGIAMSGSGIGTFILAPVVQLLIE 169

Query: 64  SYGYR 68
            + +R
Sbjct: 170 QFSWR 174

Proton-linked monocarboxylate transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GM59|MOT12_XENLA Monocarboxylate transporter 12 OS=Xenopus laevis GN=slc16a12 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query: 4   HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
           +   + GV  G+G  L + P I +V  YF K + LA GIA+SGS +G+  L P ++ L+E
Sbjct: 110 YLYLTLGVLTGLGFALCYSPAIAMVGKYFEKRKALAYGIAMSGSGIGTFILAPVVQLLIE 169

Query: 64  SYGYR 68
            + +R
Sbjct: 170 QFSWR 174

Proton-linked monocarboxylate transporter.

Xenopus laevis (taxid: 8355)

>sp|Q503M4|MT12B_DANRE Monocarboxylate transporter 12-B OS=Danio rerio GN=slc16a12b PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 38/61 (62%)

Query: 8   SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGY 67
           + G+  G+G  L + P I +V  YF + + LA GIA+SGS +G+  L P ++ L+E Y +
Sbjct: 114 TLGLLTGLGFALCYTPAIAMVGIYFCERKALAYGIAMSGSGIGTFILAPVVQLLIEHYSW 173

Query: 68  R 68
           R
Sbjct: 174 R 174

Proton-linked monocarboxylate transporter.

Danio rerio (taxid: 7955)

>sp|G5E8K6|MOT6_MOUSE Monocarboxylate transporter 6 OS=Mus musculus GN=Slc16a5 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 37/66 (56%)

Query: 3   SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62
           +H   + GV  G+G   SF   I +V  YF++ R LAN +A  G ++G    P   RYLL
Sbjct: 104 THLFLTAGVITGLGMCFSFQSSITVVGLYFVRRRPLANALASMGLSMGVTLWPLLARYLL 163

Query: 63  ESYGYR 68
           E+ G+R
Sbjct: 164 ETLGWR 169

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates such as lactate, pyruvate, branched-chain oxo acids derived from leucine, valine and isoleucine, and the ketone bodies acetoacetate, beta-hydroxybutyrate and acetate.

Mus musculus (taxid: 10090)

>sp|Q7RTY0|MOT13_HUMAN Monocarboxylate transporter 13 OS=Homo sapiens GN=SLC16A13 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 3   SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62
           +H   S G+  G G  L+F P +  ++ YF + R LA G+A++G  L S    PF ++LL
Sbjct: 104 THLYLSIGLLSGSGWALTFAPTLACLSCYFSRRRSLATGLALTGVGLSSFTFAPFFQWLL 163

Query: 63  ESYGYR 68
             Y +R
Sbjct: 164 SHYAWR 169

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates.

Homo sapiens (taxid: 9606)

>sp|O15375|MOT6_HUMAN Monocarboxylate transporter 6 OS=Homo sapiens GN=SLC16A5 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 36/66 (54%)

Query: 3   SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62
           S   F+ G   G+G   SF   I ++  YF++ R LAN +A  G +LG    P   RYLL
Sbjct: 104 SQLYFTAGFITGLGMCFSFQSSITVLGFYFVRRRVLANALASMGVSLGITLWPLLSRYLL 163

Query: 63  ESYGYR 68
           E+ G+R
Sbjct: 164 ENLGWR 169

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates such as lactate, pyruvate, branched-chain oxo acids derived from leucine, valine and isoleucine, and the ketone bodies acetoacetate, beta-hydroxybutyrate and acetate.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
193716147	668	PREDICTED: monocarboxylate transporter 1	0.652	0.092	0.774	1e-22
195434479	662	GK14778 [Drosophila willistoni] gi|19416	0.652	0.093	0.806	1e-22
194769646	657	GF22732 [Drosophila ananassae] gi|190619	0.673	0.097	0.765	8e-22
195116817	656	GI10224 [Drosophila mojavensis] gi|19391	0.652	0.094	0.774	1e-21
195397971	662	GJ18014 [Drosophila virilis] gi|19414125	0.652	0.093	0.774	2e-21
347971802	817	AGAP004384-PA [Anopheles gambiae str. PE	0.694	0.080	0.727	2e-21
195164502	653	GL21167 [Drosophila persimilis] gi|19410	0.652	0.094	0.774	2e-21
125985068	653	GA11129 [Drosophila pseudoobscura pseudo	0.652	0.094	0.774	2e-21
158284643	782	Anopheles gambiae str. PEST AGAP012507-P	0.694	0.084	0.727	3e-21
332020271	629	Monocarboxylate transporter 14 [Acromyrm	0.715	0.108	0.666	3e-21

>gi|193716147|ref|XP_001944889.1| PREDICTED: monocarboxylate transporter 1-like [Acyrthosiphon pisum]

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 7   FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66
           FSYG+  G GAGL+FPPGIFIVTSYF+KYRG ANG+AISGS LGS+FLPPFL YL+E YG
Sbjct: 133 FSYGMMFGCGAGLAFPPGIFIVTSYFVKYRGFANGVAISGSCLGSMFLPPFLGYLIEHYG 192

Query: 67  YR 68
           Y+
Sbjct: 193 YK 194

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195434479|ref|XP_002065230.1| GK14778 [Drosophila willistoni] gi|194161315|gb|EDW76216.1| GK14778 [Drosophila willistoni]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/62 (80%), Positives = 56/62 (90%)

Query: 7   FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66
            SYGV VGIGAGLSFPP ++IVTSYF+KYRGLANG+ ISGSALGSI LPP LR+LLE+YG
Sbjct: 151 ISYGVLVGIGAGLSFPPTVYIVTSYFVKYRGLANGLCISGSALGSIILPPVLRWLLENYG 210

Query: 67  YR 68
           YR
Sbjct: 211 YR 212

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194769646|ref|XP_001966913.1| GF22732 [Drosophila ananassae] gi|190619870|gb|EDV35394.1| GF22732 [Drosophila ananassae]

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/64 (76%), Positives = 55/64 (85%)

Query: 4   HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
           +   SYGV VGIGAGLSFPP ++IVTSYF K RGLANG+ ISGSALGSIFLPP LR+LLE
Sbjct: 147 YLYISYGVLVGIGAGLSFPPTVYIVTSYFTKLRGLANGLCISGSALGSIFLPPLLRWLLE 206

Query: 64  SYGY 67
           +YGY
Sbjct: 207 TYGY 210

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195116817|ref|XP_002002948.1| GI10224 [Drosophila mojavensis] gi|193913523|gb|EDW12390.1| GI10224 [Drosophila mojavensis]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 7   FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66
            SYGV VGIGAGLSFPP ++IVTSYF+K RGLANG+ ISGSA+GSI LPP LR+LLE+YG
Sbjct: 151 ISYGVLVGIGAGLSFPPTVYIVTSYFVKLRGLANGLCISGSAIGSIILPPVLRWLLETYG 210

Query: 67  YR 68
           YR
Sbjct: 211 YR 212

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195397971|ref|XP_002057601.1| GJ18014 [Drosophila virilis] gi|194141255|gb|EDW57674.1| GJ18014 [Drosophila virilis]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 7   FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66
            SYGV VGIGAGLSFPP ++IVTSYF+K RGLANG+ ISGSA+GSI LPP LR+LLE+YG
Sbjct: 153 ISYGVLVGIGAGLSFPPTVYIVTSYFVKLRGLANGLCISGSAIGSIILPPVLRWLLETYG 212

Query: 67  YR 68
           YR
Sbjct: 213 YR 214

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347971802|ref|XP_313669.5| AGAP004384-PA [Anopheles gambiae str. PEST] gi|333469035|gb|EAA09215.5| AGAP004384-PA [Anopheles gambiae str. PEST]

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 56/66 (84%)

Query: 3   SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62
           ++   SYGV VG GAGLSFPP ++IVTSYF+K RGLANG+ ISGSALGSI LPP LR+LL
Sbjct: 214 NYLYISYGVLVGTGAGLSFPPTVYIVTSYFVKLRGLANGLCISGSALGSIILPPVLRFLL 273

Query: 63  ESYGYR 68
           E+YGYR
Sbjct: 274 ENYGYR 279

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195164502|ref|XP_002023086.1| GL21167 [Drosophila persimilis] gi|194105171|gb|EDW27214.1| GL21167 [Drosophila persimilis]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 7   FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66
            SYGV VGIGAGLSFPP ++IVTSYF+K RGLANG+ ISGSALGSI LPP LR+LLE+YG
Sbjct: 148 ISYGVLVGIGAGLSFPPTVYIVTSYFVKLRGLANGLCISGSALGSIILPPLLRWLLETYG 207

Query: 67  YR 68
           Y 
Sbjct: 208 YH 209

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125985068|ref|XP_001356298.1| GA11129 [Drosophila pseudoobscura pseudoobscura] gi|54644620|gb|EAL33361.1| GA11129 [Drosophila pseudoobscura pseudoobscura]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 7   FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66
            SYGV VGIGAGLSFPP ++IVTSYF+K RGLANG+ ISGSALGSI LPP LR+LLE+YG
Sbjct: 148 ISYGVLVGIGAGLSFPPTVYIVTSYFVKLRGLANGLCISGSALGSIILPPLLRWLLETYG 207

Query: 67  YR 68
           Y 
Sbjct: 208 YH 209

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158284643|ref|XP_307640.4| Anopheles gambiae str. PEST AGAP012507-PA [Anopheles gambiae str. PEST] gi|157020947|gb|EAA45606.4| AGAP012507-PA [Anopheles gambiae str. PEST]

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 56/66 (84%)

Query: 3   SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62
           ++   SYGV VG GAGLSFPP ++IVTSYF+K RGLANG+ ISGSALGSI LPP LR+LL
Sbjct: 167 NYLYISYGVLVGTGAGLSFPPTVYIVTSYFVKLRGLANGLCISGSALGSIILPPVLRFLL 226

Query: 63  ESYGYR 68
           E+YGYR
Sbjct: 227 ENYGYR 232

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020271|gb|EGI60705.1| Monocarboxylate transporter 14 [Acromyrmex echinatior]

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/75 (66%), Positives = 59/75 (78%), Gaps = 7/75 (9%)

Query: 1   MSSHFA-------FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIF 53
           M S+FA        SYGVFVG GAGL+FPP ++IVTSYF+++RGLANG+ ISGSALGSIF
Sbjct: 142 MLSYFANSVAFLCVSYGVFVGTGAGLAFPPTVYIVTSYFVRFRGLANGLCISGSALGSIF 201

Query: 54  LPPFLRYLLESYGYR 68
           LPP L +LL  YGYR
Sbjct: 202 LPPVLGFLLREYGYR 216

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
FB|FBgn0033028	658	CG11665 [Drosophila melanogast	0.694	0.100	0.746	1.1e-20
FB|FBgn0033657	855	Sln "Silnoon" [Drosophila mela	0.673	0.074	0.515	3e-12
FB|FBgn0034063	471	CG8389 [Drosophila melanogaste	0.705	0.142	0.417	1.7e-10
WB|WBGene00020168	591	T02G5.12 [Caenorhabditis elega	0.684	0.109	0.446	1.9e-10
ASPGD|ASPL0000078250	506	AN8789 [Emericella nidulans (t	0.684	0.128	0.430	3.8e-09
WB|WBGene00015676	594	C10E2.6 [Caenorhabditis elegan	0.684	0.109	0.4	4.8e-09
ASPGD|ASPL0000037796	436	AN2746 [Emericella nidulans (t	0.747	0.162	0.408	6.2e-09
UNIPROTKB|Q6ZWE5	485	SLC16A14 "Monocarboxylate tran	0.684	0.134	0.363	1.6e-08
UNIPROTKB|E7EMG7	489	SLC16A14 "Monocarboxylate tran	0.684	0.132	0.363	1.6e-08
UNIPROTKB|F1P1F5	490	SLC16A12 "Uncharacterized prot	0.684	0.132	0.415	1.6e-08

FB|FBgn0033028 CG11665 [Drosophila melanogaster (taxid:7227)]

 Score = 253 (94.1 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 50/67 (74%), Positives = 56/67 (83%)

Query:     2 SSHFAF-SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRY 60
             S  F + SYGV VGIGAGLSFPP ++IVTSYF K RGLANG+ ISGSALGSI LPP LR+
Sbjct:   144 SIEFLYISYGVLVGIGAGLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPLLRW 203

Query:    61 LLESYGY 67
             LLE+YGY
Sbjct:   204 LLETYGY 210

GO:0008028 "monocarboxylic acid transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033657 Sln "Silnoon" [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 33/64 (51%), Positives = 44/64 (68%)

Query:     4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
             H   ++GV  GIG GLS  PGI IV+ YF K+R LANGI +SG+A GS  LP  +++L E
Sbjct:   324 HLLLTFGVLTGIGGGLSTTPGIVIVSQYFDKHRALANGICVSGTAAGSFILPVLIKHLAE 383

Query:    64 SYGY 67
             + G+
Sbjct:   384 NCGF 387

GO:0015355 "secondary active monocarboxylate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0008028 "monocarboxylic acid transmembrane transporter activity" evidence=IDA

FB|FBgn0034063 CG8389 [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 28/67 (41%), Positives = 41/67 (61%)

Query:     2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYL 61
             S HF   Y  FVG G GL  P     + SYF   RG A G++++G+ LG + +P  +RYL
Sbjct:   105 SWHFILGYSFFVGFGLGLISPSTFMAINSYFTTKRGRAVGVSLAGAGLGQVLIPHLVRYL 164

Query:    62 LESYGYR 68
             L+++G+R
Sbjct:   165 LDNHGFR 171

GO:0015355 "secondary active monocarboxylate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

WB|WBGene00020168 T02G5.12 [Caenorhabditis elegans (taxid:6239)]

 Score = 157 (60.3 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 29/65 (44%), Positives = 42/65 (64%)

Query:     4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
             HF  S GV +GIG GL + P I IVT YF   R LA GIA++G+ +G++   P   +++ 
Sbjct:   112 HFVISVGVIMGIGFGLVYCPAIVIVTMYFESKRSLATGIAVAGAGVGAVVFGPINTFIIS 171

Query:    64 SYGYR 68
             +YG+R
Sbjct:   172 NYGWR 176

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ASPGD|ASPL0000078250 AN8789 [Emericella nidulans (taxid:162425)]

 Score = 144 (55.7 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 28/65 (43%), Positives = 43/65 (66%)

Query:     4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
             HFA + GV +GIG  L++ P + +  ++F + RGLA G+ ISGSA+G +  PP LR ++ 
Sbjct:   135 HFALTQGVLLGIGTCLAYVPTMSVAPTWFDQRRGLAMGVIISGSAVGGMVWPPALRAMIT 194

Query:    64 SYGYR 68
               G+R
Sbjct:   195 HLGFR 199

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00015676 C10E2.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 144 (55.7 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query:     4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
             H   + GV +G G GL + P I IVT YF   R LA GIA++G+ +G++   P   + + 
Sbjct:   115 HIVITVGVIMGTGFGLMYCPAIVIVTMYFENKRSLATGIAVAGAGVGTVLFAPINAFFIN 174

Query:    64 SYGYR 68
             +YG+R
Sbjct:   175 NYGWR 179

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

ASPGD|ASPL0000037796 AN2746 [Emericella nidulans (taxid:162425)]

 Score = 141 (54.7 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 29/71 (40%), Positives = 39/71 (54%)

Query:     4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
             HF  + GV VG+  G  F P + I+  YF K RGLANGIA +GS++G +  P     L +
Sbjct:   140 HFILAQGVCVGLACGCLFVPAVAILPQYFRKRRGLANGIAATGSSIGGVIYPIMFNELQK 199

Query:    64 SYGYRRDTEKV 74
               G+   T  V
Sbjct:   200 KAGFHWATRAV 210

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6ZWE5 SLC16A14 "Monocarboxylate transporter 14" [Homo sapiens (taxid:9606)]

 Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 24/66 (36%), Positives = 42/66 (63%)

Query:     4 HFAF-SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62
             H+ F ++GV  G+G+G+++ P + +V  YF K R LA G++ +G+  G+  +   L+YL 
Sbjct:   124 HYLFITFGVAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLC 183

Query:    63 ESYGYR 68
               YG+R
Sbjct:   184 AEYGWR 189

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E7EMG7 SLC16A14 "Monocarboxylate transporter 14" [Homo sapiens (taxid:9606)]

 Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 24/66 (36%), Positives = 42/66 (63%)

Query:     4 HFAF-SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL 62
             H+ F ++GV  G+G+G+++ P + +V  YF K R LA G++ +G+  G+  +   L+YL 
Sbjct:   124 HYLFITFGVAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLC 183

Query:    63 ESYGYR 68
               YG+R
Sbjct:   184 AEYGWR 189

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1P1F5 SLC16A12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/65 (41%), Positives = 39/65 (60%)

Query:     4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLE 63
             H   S GV  G+G  L + P I +V  YF K + LA GIA+SGS +G+  L P ++ L+E
Sbjct:   110 HLYLSLGVLTGLGFALCYSPAIAMVGKYFNKRKALAYGIAMSGSGIGTFILAPVVQLLIE 169

Query:    64 SYGYR 68
              + +R
Sbjct:   170 QFSWR 174

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	95
TIGR00892	455	TIGR00892, 2A0113, monocarboxylate transporter 1	2e-12
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-06
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	5e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-04
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	3e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	8e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.002
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002

>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 7   FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG 66
            + G   G+G   +F P + ++  YF + R LANG+A++GS +    L P  +YL ES+G
Sbjct: 112 LTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG 171

Query: 67  YR 68
           +R
Sbjct: 172 WR 173

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 455

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 10  GVFVGIGAGLSFPPGIFIVTSYF-LKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68
            V  G+G G  FP    ++  +F  + RG A G+  +G  LG+   P     L   +G+R
Sbjct: 92  RVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWR 151

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 47.7 bits (114), Expect = 7e-08
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 7   FSYGVFVGIGAGLSFPPGIFIVTSYF-LKYRGLANGIAISGSALGSIFLPPFLRYLLESY 65
                 +G+G G  +P    ++  +F  K RG A G+  +G  LG++  P     L ES 
Sbjct: 91  LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150

Query: 66  GYR 68
           G+R
Sbjct: 151 GWR 153

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 11  VFVGIGAGLSFPPG-IFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR 68
           + +G G G +FP            + RG A+G+  +  +LG    P     LL++ GY 
Sbjct: 273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 5   FAFSYGVF------VGIGAGLSFPPGIFIVTSYF-LKYRGLANGIAISGSALGSIFLPPF 57
           FA +Y         +G      FP  I IV S+F    R  A  I  S   LG I   P 
Sbjct: 78  FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPL 137

Query: 58  LRYLLESYGYR 68
           + ++L  + ++
Sbjct: 138 VGWILIHFSWQ 148

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 70  DTEKVREKGEEEEEEEEEEKEEEEEK 95
           D+E+  E+ EEEEEEEEEE+EEEEE+
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEE 887

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 66  GYRRDTEKVREKGEEEEEEEEEEKEEEEE 94
           G   + E+  E+ EEEEEEEEEE+EEEEE
Sbjct: 861 GDSEEEEEEEEEEEEEEEEEEEEEEEEEE 889

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 8   SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGY 67
           +YG     G G+++   +     +F   RGLA+GI I G  LGS  L P +  ++   G 
Sbjct: 97  TYG-LASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGV 155

Query: 68  R 68
            
Sbjct: 156 P 156

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 63  ESYGYRRDTEKVREKGEEEEEEEEEEKEEEEEK 95
            S G   + E+  E+ EEEEEEEEEE+EEEEE+
Sbjct: 857 GSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEE 889

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 2   SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLP 55
           SS +     + +G GAGL FP    +V+    K  RG A+G+  +  +LG    P
Sbjct: 292 SSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 16/25 (64%), Positives = 20/25 (80%)

Query: 70  DTEKVREKGEEEEEEEEEEKEEEEE 94
           + E+  E+ EEEEEEEEEE+EE EE
Sbjct: 868 EEEEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 16/24 (66%), Positives = 20/24 (83%)

Query: 72  EKVREKGEEEEEEEEEEKEEEEEK 95
           E+  E+ EEEEEEEEEE+EEEE +
Sbjct: 868 EEEEEEEEEEEEEEEEEEEEEENE 891

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 16/24 (66%), Positives = 20/24 (83%)

Query: 72  EKVREKGEEEEEEEEEEKEEEEEK 95
           E+  E+ EEEEEEEEEE+EEE E+
Sbjct: 869 EEEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG2504|consensus	509		99.44
KOG2532|consensus	466		99.35
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.31
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.28
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.26
PRK10642	490	proline/glycine betaine transporter; Provisional	99.21
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.18
TIGR00893	399	2A0114 d-galactonate transporter.	99.14
PRK09952	438	shikimate transporter; Provisional	99.14
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.12
PRK12307	426	putative sialic acid transporter; Provisional	99.1
KOG2533|consensus	495		99.09
PRK11663	434	regulatory protein UhpC; Provisional	99.08
PRK03545	390	putative arabinose transporter; Provisional	99.07
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.07
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.06
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.06
TIGR00891	405	2A0112 putative sialic acid transporter.	99.05
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.04
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.04
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.03
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.99
PRK15075	434	citrate-proton symporter; Provisional	98.97
PRK09705	393	cynX putative cyanate transporter; Provisional	98.96
PRK03893	496	putative sialic acid transporter; Provisional	98.94
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.94
TIGR00900	365	2A0121 H+ Antiporter protein.	98.94
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.92
PRK10091	382	MFS transport protein AraJ; Provisional	98.92
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.9
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.9
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.89
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.88
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.88
PRK12382	392	putative transporter; Provisional	98.87
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.84
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.84
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.83
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.81
PRK05122	399	major facilitator superfamily transporter; Provisi	98.81
PRK03699	394	putative transporter; Provisional	98.79
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.78
TIGR00895	398	2A0115 benzoate transport.	98.78
PRK10504	471	putative transporter; Provisional	98.76
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.75
KOG1330|consensus	493		98.74
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.73
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.73
PTZ00207	591	hypothetical protein; Provisional	98.71
TIGR00898	505	2A0119 cation transport protein.	98.69
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.67
PLN00028	476	nitrate transmembrane transporter; Provisional	98.66
TIGR00805	633	oat sodium-independent organic anion transporter.	98.66
PRK09874	408	drug efflux system protein MdtG; Provisional	98.65
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.65
TIGR00901	356	2A0125 AmpG-related permease.	98.64
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.64
PRK11043	401	putative transporter; Provisional	98.63
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.61
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.61
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.61
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.6
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.6
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.58
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.57
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.56
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.56
KOG0255|consensus	521		98.56
PRK05122	399	major facilitator superfamily transporter; Provisi	98.55
PRK10489	417	enterobactin exporter EntS; Provisional	98.54
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.52
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.52
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.51
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.5
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.49
PRK11902	402	ampG muropeptide transporter; Reviewed	98.48
PRK11010	491	ampG muropeptide transporter; Validated	98.47
PRK12382	392	putative transporter; Provisional	98.38
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.35
PRK15011	393	sugar efflux transporter B; Provisional	98.34
KOG3764|consensus	464		98.34
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.33
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.3
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.28
PRK10489	417	enterobactin exporter EntS; Provisional	98.25
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.2
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.15
PRK09528	420	lacY galactoside permease; Reviewed	98.15
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.14
PRK10054	395	putative transporter; Provisional	98.14
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.11
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.07
PRK03545	390	putative arabinose transporter; Provisional	98.06
PRK15011	393	sugar efflux transporter B; Provisional	98.06
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.04
PRK10133	438	L-fucose transporter; Provisional	98.04
PRK03633	381	putative MFS family transporter protein; Provision	98.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.99
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.98
PRK09874	408	drug efflux system protein MdtG; Provisional	97.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.93
KOG0254|consensus	513		97.89
TIGR00891	405	2A0112 putative sialic acid transporter.	97.87
TIGR00900	365	2A0121 H+ Antiporter protein.	97.83
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.82
TIGR00893	399	2A0114 d-galactonate transporter.	97.77
PRK11663	434	regulatory protein UhpC; Provisional	97.77
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.77
PRK03633	381	putative MFS family transporter protein; Provision	97.75
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.69
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.67
PRK10642	490	proline/glycine betaine transporter; Provisional	97.67
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.67
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.64
PRK03699	394	putative transporter; Provisional	97.58
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.56
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.48
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.47
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.47
KOG0569|consensus	485		97.45
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.43
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.42
PRK03893	496	putative sialic acid transporter; Provisional	97.4
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.39
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.35
TIGR00895	398	2A0115 benzoate transport.	97.34
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.33
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.27
PRK12307	426	putative sialic acid transporter; Provisional	97.25
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.23
PRK10504	471	putative transporter; Provisional	97.22
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.13
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.12
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.12
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.11
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.1
KOG0253|consensus	528		97.09
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.09
PRK11010	491	ampG muropeptide transporter; Validated	97.06
PRK09952	438	shikimate transporter; Provisional	97.06
PRK09528	420	lacY galactoside permease; Reviewed	97.05
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.01
KOG2615|consensus	451		97.0
PRK09705	393	cynX putative cyanate transporter; Provisional	96.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	96.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.91
COG0477	338	ProP Permeases of the major facilitator superfamil	96.89
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.84
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.84
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.83
PLN00028	476	nitrate transmembrane transporter; Provisional	96.81
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	96.79
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.77
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	96.73
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.69
PRK10054	395	putative transporter; Provisional	96.67
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	96.63
PRK11043	401	putative transporter; Provisional	96.54
PRK15075	434	citrate-proton symporter; Provisional	96.51
TIGR00898	505	2A0119 cation transport protein.	96.45
PRK11902	402	ampG muropeptide transporter; Reviewed	96.42
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.41
PRK10133	438	L-fucose transporter; Provisional	96.4
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.39
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.34
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.3
KOG3626|consensus	735		96.3
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.27
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.26
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.25
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.23
PRK14995	495	methyl viologen resistance protein SmvA; Provision	96.21
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.12
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.06
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.04
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.96
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	95.95
PRK10091	382	MFS transport protein AraJ; Provisional	95.94
PRK10406	432	alpha-ketoglutarate transporter; Provisional	95.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	95.91
KOG2504|consensus	509		95.87
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	95.8
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	95.66
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	95.42
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.4
PRK11195	393	lysophospholipid transporter LplT; Provisional	95.12
PRK09848	448	glucuronide transporter; Provisional	95.12
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	95.01
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	94.95
PRK09669	444	putative symporter YagG; Provisional	94.87
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	94.74
PRK15403	413	multidrug efflux system protein MdtM; Provisional	94.55
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	94.26
PRK15462	493	dipeptide/tripeptide permease D; Provisional	94.19
KOG2563|consensus	480		93.6
PRK09669	444	putative symporter YagG; Provisional	93.58
PF13347	428	MFS_2: MFS/sugar transport protein	93.56
COG2270	438	Permeases of the major facilitator superfamily [Ge	93.48
KOG0252|consensus	538		93.46
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.37
KOG2325|consensus	488		93.25
TIGR00901	356	2A0125 AmpG-related permease.	92.94
KOG3762|consensus	618		92.81
PRK10429	473	melibiose:sodium symporter; Provisional	92.49
KOG0569|consensus	485		92.37
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	92.12
PF13347	428	MFS_2: MFS/sugar transport protein	91.41
KOG2532|consensus	466		91.06
KOG4686|consensus	459		90.89
KOG0252|consensus	538		90.68
COG2211	467	MelB Na+/melibiose symporter and related transport	90.5
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	90.39
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	90.26
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	89.54
PRK11462	460	putative transporter; Provisional	89.05
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	87.85
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	87.48
PTZ00207	591	hypothetical protein; Provisional	87.3
KOG2615|consensus	451		87.24
KOG3098|consensus	461		85.69
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	85.2
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	84.99
PF12597	118	DUF3767: Protein of unknown function (DUF3767); In	84.7
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	84.19
KOG1237|consensus	571		83.46
KOG4686|consensus	459		83.45
KOG2816|consensus	463		82.56
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	81.68
PRK10429	473	melibiose:sodium symporter; Provisional	81.48
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	80.98
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	80.35

>KOG2504|consensus

Probab=99.44  E-value=8.3e-14  Score=99.66  Aligned_cols=71  Identities=41%  Similarity=0.848  Sum_probs=69.1

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .|++|++++++.|+|.|+.+.++..++..||+|||++|+|+..+|.++|.++.|++..++.+.+|||+.++
T Consensus       134 i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l  204 (509)
T KOG2504|consen  134 LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALL  204 (509)
T ss_pred             HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999887

>KOG2532|consensus

Probab=99.35  E-value=1.6e-12  Score=92.26  Aligned_cols=78  Identities=23%  Similarity=0.287  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh-cChHHhhH----------
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES-YGYRRDTE----------   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~----------   72 (95)
                      .++..|+++|+++|..+|+...+.++|.| ++|++..++..++..+|+++..|+.+++.+. +||+++|+          
T Consensus       130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~  209 (466)
T KOG2532|consen  130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWF  209 (466)
T ss_pred             hhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHH
Confidence            45778899999999999999999999998 6999999999999999999999999999999 99999998          


Q ss_pred             -----HhccCccchh
Q psy12271         73 -----KVREKGEEEE   82 (95)
Q Consensus        73 -----~~~~~p~~~~   82 (95)
                           +.+|+|++.+
T Consensus       210 ~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  210 ILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHHHHHhcCCcccCC
Confidence                 4567887743

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.3e-12  Score=91.22  Aligned_cols=78  Identities=21%  Similarity=0.270  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHH--HHHHhhcChHHhhH-------
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFL--RYLLESYGYRRDTE-------   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~--~~l~~~~gw~~~~~-------   72 (95)
                      ..++.+.-++.|..||...|++...+++||+ ++||+..+++++++++|..+.+++.  +++..+++||..|+       
T Consensus       117 ~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiai  196 (448)
T COG2271         117 LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAI  196 (448)
T ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            4556667789999999999999999999998 5999999999999999999999999  99999999999997       


Q ss_pred             --------HhccCccc
Q psy12271         73 --------KVREKGEE   80 (95)
Q Consensus        73 --------~~~~~p~~   80 (95)
                              .+||+|++
T Consensus       197 ival~~~~~~rd~Pqs  212 (448)
T COG2271         197 IVALILLFLLRDRPQS  212 (448)
T ss_pred             HHHHHHHHHhCCCccc
Confidence                    56899987

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.28  E-value=2.3e-11  Score=84.56  Aligned_cols=71  Identities=17%  Similarity=0.215  Sum_probs=62.3

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh------hcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE------SYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~------~~gw~~~~~   72 (95)
                      ++..++..+++.|++.+...+....++++|+| ++|+++++++..+.++|..+++++.+++.+      .+|||+.|.
T Consensus        95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~  172 (412)
T TIGR02332        95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFL  172 (412)
T ss_pred             CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHH
Confidence            34456667899999999999999899999998 589999999999999999999999998874      369999987

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.26  E-value=2.3e-11  Score=85.31  Aligned_cols=69  Identities=25%  Similarity=0.331  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-ChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY-GYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~   72 (95)
                      ..++..++++|++.+..++....++++|+| ++|++++++...+..+|..+++++.+++.+.+ |||+.|+
T Consensus       132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~  202 (465)
T TIGR00894       132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFY  202 (465)
T ss_pred             hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehh
Confidence            346677899999999999999999999998 69999999999999999999999999999984 9998776

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.21  E-value=1.3e-10  Score=82.41  Aligned_cols=68  Identities=16%  Similarity=0.206  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH--------hhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL--------ESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~--------~~~gw~~~~~   72 (95)
                      +++..++++|++.|..+++...++++|+| ++||++.++...+..+|..+++.+...+.        .++|||+.|+
T Consensus       120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~  196 (490)
T PRK10642        120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFF  196 (490)
T ss_pred             HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHH
Confidence            47778999999999999999999999998 69999999999888888888776655443        3689999887

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.18  E-value=1.4e-10  Score=80.01  Aligned_cols=70  Identities=13%  Similarity=0.081  Sum_probs=61.5

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++..++..++++|+|++. +++....+++|+| ++|++++++...+..+|..+++++...+.+++|||+.|.
T Consensus        78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~  148 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLII  148 (368)
T ss_pred             cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            355677888999999985 5666667789998 699999999999999999999999999999999999886

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.14  E-value=2.2e-10  Score=77.05  Aligned_cols=70  Identities=26%  Similarity=0.352  Sum_probs=63.9

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++..+++.|++.+...++...++.+++| ++|++++++......+|..+++++.+.+.+.++||+.|.
T Consensus        82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  152 (399)
T TIGR00893        82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFI  152 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHH
Confidence            4456667799999999999999999999998 599999999999999999999999999999999999886

>PRK09952 shikimate transporter; Provisional

Probab=99.14  E-value=3.8e-10  Score=79.04  Aligned_cols=68  Identities=10%  Similarity=0.172  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh--------hcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE--------SYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~--------~~gw~~~~~   72 (95)
                      +++..|+++|++.|..++....++++++| ++|++..+....+..+|..++..+...+..        .+|||..|.
T Consensus       127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~  203 (438)
T PRK09952        127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFL  203 (438)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHH
Confidence            46678899999999999999999999998 599999999999999999999888776653        589999887

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.12  E-value=3.8e-10  Score=78.11  Aligned_cols=70  Identities=11%  Similarity=0.125  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++..+++.|++.+...+....++.+++| ++|++++++...+.++|..+++++.+.+.+.+|||+.|+
T Consensus       108 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~  178 (394)
T PRK10213        108 FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN  178 (394)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            4455667799999999999999999999998 699999999999999999999999999999999999887

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.10  E-value=4.2e-10  Score=77.81  Aligned_cols=70  Identities=19%  Similarity=0.280  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++..+++.|++.+..++....++.+++| ++|++++++...+..+|.++++.+.+.+.+.+|||+.|.
T Consensus       106 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~  176 (426)
T PRK12307        106 VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFF  176 (426)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHH
Confidence            3456667899999999999999999999998 589999999999999999999999999999999999886

>KOG2533|consensus

Probab=99.09  E-value=1.2e-10  Score=83.32  Aligned_cols=71  Identities=23%  Similarity=0.235  Sum_probs=64.5

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHH------hhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLL------ESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~------~~~gw~~~~~   72 (95)
                      +...|++.+++.|+.+++.+|+...++..||.| +|++.+|++.+..++|+++++.+...+.      ...||||.|.
T Consensus       133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~Fi  210 (495)
T KOG2533|consen  133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFI  210 (495)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehh
Confidence            456688889999999999999999999999985 9999999999999999999999998863      4579999997

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.08  E-value=5.2e-10  Score=78.17  Aligned_cols=68  Identities=18%  Similarity=0.209  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .++..+++.|++.|..+++...++++|+| ++|++++++...+..+|..+++++.+++.+.+|||+.|.
T Consensus       113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~  181 (434)
T PRK11663        113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMM  181 (434)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            34455678899999889999999999998 589999999999999999999999999999999999886

>PRK03545 putative arabinose transporter; Provisional

Probab=99.07  E-value=9.7e-10  Score=75.53  Aligned_cols=70  Identities=11%  Similarity=0.091  Sum_probs=62.6

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++..++++|++.+...+...+++++++| ++|++++|+...+..+|..+++++.+.+.+.+|||+.|+
T Consensus        97 ~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~  167 (390)
T PRK03545         97 FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFL  167 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHH
Confidence            4455666789999988888888899999998 599999999999999999999999999999999999887

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.07  E-value=5.3e-10  Score=77.97  Aligned_cols=72  Identities=17%  Similarity=0.252  Sum_probs=68.0

Q ss_pred             CchhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          1 MSSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         1 ~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +++.+++..|++.|+..|..++....+..+..| +||++++++..+|..++.+++.|++.++-+.+|||+.|.
T Consensus        99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~  171 (394)
T COG2814          99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL  171 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence            356778889999999999999999999999998 599999999999999999999999999999999999998

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.06  E-value=1.2e-09  Score=76.26  Aligned_cols=68  Identities=12%  Similarity=0.188  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH--------hhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL--------ESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~--------~~~gw~~~~~   72 (95)
                      .++..|+++|++.|..++...+++++++| ++||++.++...+...|..+++.+...+.        +.+|||+.|.
T Consensus       126 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~  202 (432)
T PRK10406        126 LLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFA  202 (432)
T ss_pred             HHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHH
Confidence            46778899999999999999999999998 69999999998888888887776654443        3689999887

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.06  E-value=4.6e-10  Score=75.46  Aligned_cols=69  Identities=25%  Similarity=0.404  Sum_probs=61.2

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..++..+++.|++.+..++.....+.+|+|++|++++++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus        92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~  160 (377)
T TIGR00890        92 AALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFI  160 (377)
T ss_pred             HHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHH
Confidence            345556679999999888888889999999999999999999999999999999999988899999886

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.05  E-value=2.1e-09  Score=73.22  Aligned_cols=70  Identities=23%  Similarity=0.347  Sum_probs=62.4

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC--hHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG--YRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g--w~~~~~   72 (95)
                      +..++..+++.|++.+..++....++.+++| ++|++++++...+..+|..+++.+.+.+.+..+  ||+.|.
T Consensus       100 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~  172 (405)
T TIGR00891       100 YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF  172 (405)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence            3445667799999999999999999999998 699999999999999999999999999998877  998876

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.04  E-value=1.2e-09  Score=76.56  Aligned_cols=69  Identities=16%  Similarity=0.166  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH--------hhcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL--------ESYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~--------~~~gw~~~~~   72 (95)
                      ..++..|+++|++.|..++....++++++| ++||+++++...+..+|..+++.+...+.        +.+|||+.|.
T Consensus       121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~  198 (479)
T PRK10077        121 PEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFA  198 (479)
T ss_pred             HHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHH
Confidence            345678899999999999999999999998 68999999999999999998876655443        4579999887

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.04  E-value=8.6e-10  Score=77.71  Aligned_cols=70  Identities=33%  Similarity=0.645  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +.+++..+++.|++.+...++...++.+||+++|++++|+...+..+|..+++++.+.+.+.+|||+.|+
T Consensus       108 ~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~  177 (455)
T TIGR00892       108 IELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFL  177 (455)
T ss_pred             HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHH
Confidence            3445556788899998877778888999999999999999999999999999999999999999999987

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.03  E-value=2e-09  Score=76.50  Aligned_cols=60  Identities=17%  Similarity=0.289  Sum_probs=53.2

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL   62 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~   62 (95)
                      +..++..+++.|++.|..++....++++++| ++||+++++......+|..+++.+...+.
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788899999999999999999999998 69999999999999999988888876654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.99  E-value=1.7e-09  Score=76.81  Aligned_cols=71  Identities=21%  Similarity=0.271  Sum_probs=63.5

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhh-c-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYF-L-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f-~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++..++..++++|+|.+...+....++.+++ | ++|++++|+......+|..++|++.+.+.+++||||.|+
T Consensus        93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~  165 (495)
T PRK14995         93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFL  165 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence            4556677789999999988888888887777 5 699999999999999999999999999999999999998

>PRK15075 citrate-proton symporter; Provisional

Probab=98.97  E-value=3.9e-09  Score=73.74  Aligned_cols=68  Identities=12%  Similarity=0.183  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHH--------HhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYL--------LESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l--------~~~~gw~~~~~   72 (95)
                      +++..++++|++.+..++....++++|+| ++|++++++...+..+|..+++.++..+        .+.+|||+.|.
T Consensus       119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~  195 (434)
T PRK15075        119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFL  195 (434)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHH
Confidence            35677899999999999988899999998 6999999999988888877777776665        35789999887

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.96  E-value=3.7e-09  Score=73.09  Aligned_cols=71  Identities=14%  Similarity=0.162  Sum_probs=63.0

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-ChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESY-GYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~   72 (95)
                      ++..++..++++|++.+..++....++.+|||++|+++++++..+..+|..+++++.+++.+++ +||+.+.
T Consensus        96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~  167 (393)
T PRK09705         96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA  167 (393)
T ss_pred             chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4456677899999999998888889999999999999999999999999999999999998876 8998764

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.94  E-value=4.8e-09  Score=73.89  Aligned_cols=70  Identities=19%  Similarity=0.301  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++..+++.|++.+..++....++.+++| ++|++++++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus       108 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~  178 (496)
T PRK03893        108 YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFF  178 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence            3445667789999999989999999999998 589999999999999999999999999999999999877

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.94  E-value=7.4e-10  Score=74.04  Aligned_cols=68  Identities=29%  Similarity=0.495  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .++..+++.|++.+...+....++.+++|+ +|++++++...+..+|..+++++.+.+.+.+|||+.|+
T Consensus        87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~  155 (352)
T PF07690_consen   87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFL  155 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHH
T ss_pred             HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccc
Confidence            677888999999999999999999999995 99999999999999999999999999998999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.94  E-value=4.2e-09  Score=70.60  Aligned_cols=70  Identities=11%  Similarity=0.050  Sum_probs=63.3

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++..+++.|++.+...++...++.+++| ++|++++++...+..+|..+++++.+.+.+.+|||+.|+
T Consensus        92 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~  162 (365)
T TIGR00900        92 IWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW  162 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4455666788999999999999999999998 599999999999999999999999999999999999886

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.92  E-value=7e-09  Score=70.36  Aligned_cols=70  Identities=13%  Similarity=0.049  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++..+++.|++.+...++...++.+++| ++|++++++......+|..+++.+.+.+.+.+|||+.|.
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  163 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA  163 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            3455667789999999999999999999998 589999999999999999999999999999999998876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.92  E-value=5.7e-09  Score=71.71  Aligned_cols=70  Identities=16%  Similarity=0.173  Sum_probs=61.9

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++..+++.|++.+...+....++.+++++ +|++++++...+..+|..+++++.+++.+.+|||+.|.
T Consensus        91 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~  161 (382)
T PRK10091         91 YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL  161 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence            44556677999999998888888889999985 89999999999999999999999999999999999887

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.90  E-value=6.9e-09  Score=72.56  Aligned_cols=68  Identities=15%  Similarity=0.169  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-hcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE-SYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~   72 (95)
                      .+...+++.|++.+..+++....+.+++| ++|++++++...+..+|..+++++.+.... ..|||+.|+
T Consensus       120 ~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~  189 (438)
T TIGR00712       120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALY  189 (438)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHH
Confidence            34456678899999888888889999997 699999999999999999999998886554 579999887

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.90  E-value=9e-09  Score=70.79  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=62.6

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++..+++.|++.+...+....++.+++| ++|++++++...+..+|..+++.+...+.+.++||+.|+
T Consensus       103 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  173 (406)
T PRK11551        103 FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFY  173 (406)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence            4455667789999999889999999999997 699999999999999999999999988889899999876

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.89  E-value=1.1e-08  Score=71.37  Aligned_cols=71  Identities=14%  Similarity=-0.063  Sum_probs=61.4

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++..++..++++|++.+...+....++.+++| ++|++++++...+..+|..+++++++.+.+.+|||+.|+
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~  174 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA  174 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            44566778899999988666666778889998 588999999999999999999999999999899999887

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.88  E-value=5.2e-09  Score=74.77  Aligned_cols=68  Identities=12%  Similarity=0.034  Sum_probs=60.7

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..+.+.+++.|+++|..+ +...++..||| ++|++++|+..++..+|.++++++.++ +..+|||+-+.
T Consensus       115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~  183 (511)
T TIGR00806       115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYST  183 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHH
Confidence            4456778899999999999 99999999999 599999999999999999999999999 66799997443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.88  E-value=1.1e-09  Score=77.13  Aligned_cols=70  Identities=11%  Similarity=-0.049  Sum_probs=60.4

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc---ChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY---GYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~---gw~~~~~   72 (95)
                      +..++..+++.|++++...++...++++||| ++||+++|+...+..+|..+++++..++...+   +||..|.
T Consensus       122 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~  195 (467)
T PRK09556        122 LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFI  195 (467)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHH
Confidence            4456667889999999999999999999998 58999999999999999999999988877654   5887664

>PRK12382 putative transporter; Provisional

Probab=98.87  E-value=7.7e-09  Score=70.99  Aligned_cols=69  Identities=10%  Similarity=-0.023  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..++..++++|++.+...+.....+.+++| ++|++++++...+...|..+++++.+.+.+.+|||+.+.
T Consensus       113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~  182 (392)
T PRK12382        113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALAL  182 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence            445667889999999888888888999997 699999999999999999999999999999999998654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.84  E-value=8.8e-09  Score=71.03  Aligned_cols=68  Identities=18%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHH---HHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFL---RYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~---~~l~~~~gw~~~~~   72 (95)
                      .++..+++.|++.+..++....++++++| ++|++++++...+..+|..+++.+.   ..+....|||+.|.
T Consensus       129 ~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~  200 (481)
T TIGR00879       129 MLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG  200 (481)
T ss_pred             HHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence            56778899999999999999999999998 6999999999999999999999998   66667789998886

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.84  E-value=4.9e-09  Score=73.41  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=64.6

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++..++..++++|++.+...+....++.+++| ++|++++++...+..+|..+++.+.+++.+++|||+.|+
T Consensus        89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            34556778899999999999999999999998 699999999999999999999999999999999999886

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.83  E-value=2.6e-08  Score=67.78  Aligned_cols=70  Identities=9%  Similarity=-0.006  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++..+++.|++.+...++...++.+++| ++|++++++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus        79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  149 (377)
T PRK11102         79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFW  149 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            3445566789999988888888899999998 589999999999999999999999999999999999886

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.81  E-value=2.5e-08  Score=74.51  Aligned_cols=64  Identities=17%  Similarity=0.258  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG   66 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g   66 (95)
                      +..++..+++.|++.|...+....++++++| ++||++++++.+...+|.++++.+...+...+|
T Consensus       255 ~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       255 YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4456677899999999999999999999998 699999999999999999999998888776554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.81  E-value=1.7e-08  Score=69.34  Aligned_cols=68  Identities=13%  Similarity=-0.052  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .++..++++|++.+...+....++.+++| ++|++++++...+..+|..+++++.+.+.+.+||++.+.
T Consensus       114 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~  182 (399)
T PRK05122        114 LLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGL  182 (399)
T ss_pred             HHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            45667899999999999988888889987 699999999999999999999999999999999998775

>PRK03699 putative transporter; Provisional

Probab=98.79  E-value=3e-08  Score=68.40  Aligned_cols=70  Identities=20%  Similarity=0.241  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-hcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE-SYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~   72 (95)
                      ...++..++++|++.+...+....++.+++| ++|++++++......+|..+++++.+.+.. .+|||+.|.
T Consensus        95 ~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~  166 (394)
T PRK03699         95 LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA  166 (394)
T ss_pred             HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            3445667789999989888888889999998 589999999999999999999999888764 579999886

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.78  E-value=5.2e-08  Score=65.84  Aligned_cols=68  Identities=15%  Similarity=0.226  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH--------hhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL--------ESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~--------~~~gw~~~~~   72 (95)
                      +++..++++|++.+...+....++.+++| ++|+++.++...+..+|..+++.+...+.        +.++||+.|.
T Consensus        98 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~  174 (394)
T TIGR00883        98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFL  174 (394)
T ss_pred             HHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHH
Confidence            45667899999999999999999999997 69999999999999999999988876654        4679998876

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00895 2A0115 benzoate transport

Probab=98.78  E-value=2.5e-08  Score=67.61  Aligned_cols=70  Identities=21%  Similarity=0.356  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++..+++.|++.+..++....++.+++| ++|++++++...+..+|..+++.+.+++.+.+|||+.|.
T Consensus       105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~  175 (398)
T TIGR00895       105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY  175 (398)
T ss_pred             hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehh
Confidence            3445667789999999999999999999998 589999999999999999999999999999999998766

>PRK10504 putative transporter; Provisional

Probab=98.76  E-value=3.6e-08  Score=69.21  Aligned_cols=70  Identities=16%  Similarity=0.133  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++..++++|++.+...+.....+.+++| ++|+++.++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus        98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            3445667899999999999999999999998 589999999999999999999999999999999999987

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.75  E-value=6.6e-08  Score=66.38  Aligned_cols=69  Identities=12%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..++..+++.|++.+..++....++.+++| ++|++++++......++..+++.+.+.+.+.+|||+.|+
T Consensus        92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~  161 (392)
T PRK10473         92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY  161 (392)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence            345566788999988888889999999998 699999999999999999999999988888899998876

>KOG1330|consensus

Probab=98.74  E-value=4.3e-10  Score=79.49  Aligned_cols=69  Identities=19%  Similarity=0.075  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~   72 (95)
                      .+++..|.+.|+|.+.+.+.+.+++++-||+ +|++++++++.+.+.|..++-+++..+....+ |||+|+
T Consensus       122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~  192 (493)
T KOG1330|consen  122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR  192 (493)
T ss_pred             HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence            3455566789999999999999999999995 99999999999999999999999998887776 999987

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.73  E-value=7e-09  Score=69.74  Aligned_cols=70  Identities=24%  Similarity=0.265  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHH-HHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPP-FLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~-~~~~l~~~~gw~~~~~   72 (95)
                      ...++..+++.|++.+...+....++.+++| ++|++++++...+..+|..++++ +...+.+..+||+.|.
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  154 (379)
T TIGR00881        83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI  154 (379)
T ss_pred             HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence            3456667789999999999999999999998 58999999999999999999995 6666777889999886

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.73  E-value=7.2e-08  Score=67.78  Aligned_cols=69  Identities=14%  Similarity=0.141  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHH-HHHhhcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLR-YLLESYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~-~l~~~~gw~~~~~   72 (95)
                      ..++..+++.|++.+..+++....+.+|+| ++|++++|+.+.+..+|..+.+++.. .+....|||+.|+
T Consensus       121 ~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~  191 (452)
T PRK11273        121 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALY  191 (452)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHH
Confidence            345556788999999888888888999998 58999999999999998766555543 3334459999887

>PTZ00207 hypothetical protein; Provisional

Probab=98.71  E-value=5.7e-08  Score=71.00  Aligned_cols=67  Identities=19%  Similarity=0.087  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .+..++++.|+|.+..++.+...+.+|||++||+++|+.....++|..+.+++...+.. .+|++.|+
T Consensus       122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl  188 (591)
T PTZ00207        122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFF  188 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence            34455678999999888888899999999999999999999999999887777776655 46887665

>TIGR00898 2A0119 cation transport protein

Probab=98.69  E-value=1.1e-07  Score=67.26  Aligned_cols=68  Identities=18%  Similarity=0.331  Sum_probs=57.7

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++..++..+++.|++.+...+....++.+++| ++|+++.++...+..+|.++++.+...+.+   ||+.|+
T Consensus       179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~  247 (505)
T TIGR00898       179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQL  247 (505)
T ss_pred             cHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHH
Confidence            34567777899999999999999999999998 589999999999999999888877665543   998876

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.67  E-value=9.5e-08  Score=68.33  Aligned_cols=67  Identities=15%  Similarity=0.167  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-c--chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-K--YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~--~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++...+++|+|.|...+...+++.++|| +  +|+.+.+++.++.++|..+++.+.+++.+++|||+.|+
T Consensus       108 l~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~  177 (489)
T PRK10207        108 IFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYN  177 (489)
T ss_pred             HHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence            4456678899999999999999999997 3  45889999999999999999999999999999999997

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.66  E-value=1.6e-07  Score=66.71  Aligned_cols=68  Identities=19%  Similarity=0.206  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH----h-----hcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL----E-----SYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~----~-----~~gw~~~~~   72 (95)
                      ..++..+++.|++.+.. .+....+++||| ++||+++|+......+|..+++.+...+.    .     ..|||+.|+
T Consensus       125 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~  202 (476)
T PLN00028        125 TGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFF  202 (476)
T ss_pred             HHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence            34556678899887754 445567899998 59999999998766666666655554432    2     258999887

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.66  E-value=6.7e-08  Score=71.08  Aligned_cols=63  Identities=27%  Similarity=0.293  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY   65 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~   65 (95)
                      +.++++.++++|+|.+..++....++++++| ++|+++++++..+..+|+.+++++++++.+.+
T Consensus       172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence            4567778999999999999999999999998 59999999999999999999999999988654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.65  E-value=3e-07  Score=63.11  Aligned_cols=69  Identities=20%  Similarity=0.229  Sum_probs=57.3

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++..+++.|++.+ ..+.....+.+++| ++|++++++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus       107 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  176 (408)
T PRK09874        107 IWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFF  176 (408)
T ss_pred             HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            3445566788888754 45666778888887 599999999999999999999999999999999998876

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.65  E-value=1.5e-07  Score=64.93  Aligned_cols=70  Identities=13%  Similarity=0.021  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++..+++.|++.+...+.....+.+++|+ +|++++++......++..++|++.+.+.+.+|||+.|+
T Consensus       101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~  171 (406)
T PRK15402        101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFV  171 (406)
T ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence            34455677899999888888888999999984 88899999988888999999999999999999999887

>TIGR00901 2A0125 AmpG-related permease

Probab=98.64  E-value=2.2e-07  Score=63.03  Aligned_cols=64  Identities=9%  Similarity=-0.094  Sum_probs=56.4

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC--------hHHhhH
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG--------YRRDTE   72 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g--------w~~~~~   72 (95)
                      ..++.+++.+...++..+++.+++| ++|++++++...+..+|..+++++...+.+.+|        ||..|.
T Consensus        89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~  161 (356)
T TIGR00901        89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF  161 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence            3456667777778888899999997 699999999999999999999999999998888        999887

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.64  E-value=9.3e-08  Score=73.55  Aligned_cols=70  Identities=14%  Similarity=0.002  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++..++++|++.+...|+..+++.++++ ++|++++|+..++.++|.++++++++++....||++.|.
T Consensus       108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~  178 (1140)
T PRK06814        108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA  178 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            4456667899999999999999999999998 599999999999999999999999999999999999874

>PRK11043 putative transporter; Provisional

Probab=98.63  E-value=3.1e-07  Score=63.26  Aligned_cols=70  Identities=11%  Similarity=0.080  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++..+++.|++.+...+....++.+++++ +++.+.+.......++..+++++.+++.+.+|||+.|+
T Consensus        94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~  164 (401)
T PRK11043         94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFA  164 (401)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            33455567889998887777777889999985 78899999999999999999999999999999999886

>TIGR00897 2A0118 polyol permease family

Probab=98.61  E-value=1.6e-07  Score=64.97  Aligned_cols=66  Identities=15%  Similarity=0.097  Sum_probs=52.7

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHH-HHHHHHHHHHHhhcChH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGS-IFLPPFLRYLLESYGYR   68 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~-~~~~~~~~~l~~~~gw~   68 (95)
                      +..++..+++.|+|.+...+.....+.+++| ++|++++|+...+.++|. .+++++.+++.+.+||+
T Consensus       105 ~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~  172 (402)
T TIGR00897       105 YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM  172 (402)
T ss_pred             HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence            3344566788899888777777777778876 699999999999999997 57888888888888844

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.61  E-value=2.5e-07  Score=53.98  Aligned_cols=68  Identities=25%  Similarity=0.432  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .++...++.|++.+...+.....+.+.+| ++|++++++......+|..+++.+.+.+.+..+|++.+.
T Consensus        53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  121 (141)
T TIGR00880        53 VLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFL  121 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHH
Confidence            34555688899888888888899999998 589999999999999999999999999999999998876

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.61  E-value=3.5e-07  Score=62.86  Aligned_cols=70  Identities=14%  Similarity=0.156  Sum_probs=60.6

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++..+++.|++.+...+....+..++++ ++++.++++...+..++..+++++.+.+.+.+|||+.|+
T Consensus        96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~  166 (394)
T PRK11652         96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYL  166 (394)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence            3455667789999888777777788888887 599999999999999999999999999999999998887

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.60  E-value=2.8e-07  Score=61.25  Aligned_cols=71  Identities=27%  Similarity=0.419  Sum_probs=64.3

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +...++..+++.|++.+...+....++.+++|+ +|++++++......+|..+++.+.+.+.+..+||+.+.
T Consensus        86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  157 (352)
T cd06174          86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFL  157 (352)
T ss_pred             cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            345566778999999999999999999999985 99999999999999999999999999999999998876

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.60  E-value=2.4e-07  Score=64.37  Aligned_cols=68  Identities=19%  Similarity=0.305  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..++..+++.|++.+...++..+++.+++| ++|++++|+......+|..+++++.+++. .+|||+.|+
T Consensus       100 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~  168 (400)
T PRK11646        100 WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCA  168 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence            344556788999888888888899999997 69999999999999999999999999998 789999887

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.58  E-value=2.6e-07  Score=62.51  Aligned_cols=68  Identities=19%  Similarity=0.303  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh----------hcChHHhh
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE----------SYGYRRDT   71 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~----------~~gw~~~~   71 (95)
                      +..++..+++.|++.+ .+++...++++++| ++|++++++......+|..+++.+.+.+..          ..+||+.|
T Consensus        91 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~  169 (366)
T TIGR00886        91 YSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF  169 (366)
T ss_pred             HHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence            4456667889998855 45667889999998 599999999986666666666555555443          24899888

>TIGR00896 CynX cyanate transporter

Probab=98.57  E-value=3.2e-07  Score=62.28  Aligned_cols=69  Identities=14%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC--hHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG--YRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g--w~~~~~   72 (95)
                      ..++..+++.|++.+...+....++.+++|++|++++++...+..+|..+++.+.+.+.+..+  ||+.|.
T Consensus        88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~  158 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA  158 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            445667789999988877777778899999999999999999999999999999988887653  898775

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.56  E-value=1.9e-07  Score=64.30  Aligned_cols=68  Identities=13%  Similarity=0.043  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..++..++++|.+.+...|....+.. +++++|+++.|....+.++|..+++++.+.+.+.+|||..|.
T Consensus        95 ~~l~~~~~l~~~~~~~~~p~~~al~~-~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~  162 (382)
T TIGR00902        95 WLLFIAIGLFALFFSAGMPIGDALAN-TWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA  162 (382)
T ss_pred             HHHHHHHHHHHHHHccchhHHHHHHH-HHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            34444566788887777777767654 456789999999999999999999999999999999999887

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.56  E-value=2.7e-07  Score=65.67  Aligned_cols=68  Identities=19%  Similarity=0.233  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhcc----chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK----YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~----~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .++...++.|+|.|...+....++++++|+    +|+.+.++...+..+|..+++++.+++.+++||++.|.
T Consensus       104 ~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~  175 (475)
T TIGR00924       104 LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFN  175 (475)
T ss_pred             HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            344456788999999999999999999973    38899999999999999999999999999999999886

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0255|consensus

Probab=98.56  E-value=4e-07  Score=64.98  Aligned_cols=68  Identities=19%  Similarity=0.185  Sum_probs=62.1

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++..|+..|++.|++.+..+.....+++++++ ++|+.+..+ ......++.+.+++.+++.+  +||+.++
T Consensus       170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence            56788899999999999999999999999996 799999999 88888899999999999988  8999887

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.55  E-value=5.3e-07  Score=62.01  Aligned_cols=67  Identities=21%  Similarity=0.148  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .+...++.|++.+..++.....+.+.+| ++||++.|+.+....+|..+++++.+.+.++.||++.|.
T Consensus       305 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  372 (399)
T PRK05122        305 ALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFL  372 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            3445578888888888877777788887 699999999999999999999999999999999998887

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.54  E-value=3.2e-07  Score=63.63  Aligned_cols=69  Identities=16%  Similarity=0.155  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..++..+++.|++.+...++...++.+++| ++|+++.++...+..+|..+++++.+.+.+..||++.|.
T Consensus       111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~  180 (417)
T PRK10489        111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG  180 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH
Confidence            344556788898888778888889999998 589999999999999999999999999999899999887

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.52  E-value=7.5e-07  Score=63.59  Aligned_cols=57  Identities=19%  Similarity=0.246  Sum_probs=44.1

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLR   59 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~   59 (95)
                      ++..++..+++.|++ +..+++....+++|||+ +||+++|+...+..+|..+.+++..
T Consensus       127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            455677788999997 77899999999999995 8999999996555555554444443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.52  E-value=8e-08  Score=67.79  Aligned_cols=68  Identities=15%  Similarity=0.115  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-ChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY-GYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~   72 (95)
                      .++...++.|++.+...+...+++.+.+| +++++++|+.+....+|..++|++.+.+.+.. +|++.|+
T Consensus       335 ~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~  404 (455)
T TIGR00892       335 GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFY  404 (455)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHH
Confidence            34456678888888888888889999997 58999999999999999999999999999877 4988776

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.51  E-value=3e-07  Score=63.21  Aligned_cols=67  Identities=12%  Similarity=0.020  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .++..+++.|++.+...+....++.+| .++|+++.+.......+|..++|++++++.+++|||..|+
T Consensus        96 ~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~  162 (382)
T PRK11128         96 LLFVAIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILW  162 (382)
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence            344566778888887777776666654 6788899999999999999999999999999999998876

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.50  E-value=5.5e-07  Score=64.50  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhcc---chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK---YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~---~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +++...++.|+|.|...+....+++++||+   +|+.+.+++..+..+|..++|++.+++.+++|||+.|.
T Consensus       114 ~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~  184 (500)
T PRK09584        114 IVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFA  184 (500)
T ss_pred             HHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence            344556788999998888888999999973   35568899999999999999999999999999999886

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.49  E-value=7.3e-07  Score=60.39  Aligned_cols=68  Identities=15%  Similarity=0.157  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHH--HHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLA--NGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a--~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .++..+++.|.+.+...|....++.++.|+ +|+.+  .++...+..+|..+++++.+.+.+.+|||+.|.
T Consensus        89 ~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~  159 (375)
T TIGR00899        89 LLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFL  159 (375)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHH
Confidence            344556777766666677777788888874 55544  688888889999999999999999999999887

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.48  E-value=1.3e-06  Score=60.52  Aligned_cols=66  Identities=14%  Similarity=0.071  Sum_probs=56.7

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhh-cChHHhhH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLES-YGYRRDTE   72 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~   72 (95)
                      +...++.++..+...++...++.+++|+ +|+++.++...+..+|..+++.+...+.+. +|||..|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~  165 (402)
T PRK11902         98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL  165 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence            3344566777777888999999999985 799999999999999999999999999886 59999887

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.47  E-value=9.7e-07  Score=63.04  Aligned_cols=68  Identities=13%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-hcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE-SYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~   72 (95)
                      .+...+++.|++.+...++...++.+|+| ++|++++++...+..+|..+++.+..++.+ .+|||..|+
T Consensus       109 ~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~  178 (491)
T PRK11010        109 WLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW  178 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence            44445677888888888888899999998 699999999999999999999999999998 579999997

>PRK12382 putative transporter; Provisional

Probab=98.38  E-value=2.1e-06  Score=58.94  Aligned_cols=67  Identities=24%  Similarity=0.216  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .+...++.|++.+..++.....+.+.+| ++||+++|+.+....+|..+++++.+++.+++||+..|.
T Consensus       305 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~  372 (392)
T PRK12382        305 ALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFL  372 (392)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            3445577888888777877777788886 699999999999999999999999999999999999887

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.35  E-value=8.3e-07  Score=62.33  Aligned_cols=66  Identities=27%  Similarity=0.431  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC---hHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG---YRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g---w~~~~~   72 (95)
                      .++..+++.|++ |..+......++.|||| ++|+|+|+.. ..++|..+...+...++...|   ||.+-.
T Consensus       107 ~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~  176 (417)
T COG2223         107 QLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAG  176 (417)
T ss_pred             HHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            567777899986 66788888999999995 9999999999 888999999999999999999   886544

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.34  E-value=2.7e-06  Score=58.76  Aligned_cols=62  Identities=15%  Similarity=0.083  Sum_probs=45.8

Q ss_pred             HHHHhhccccchhHHHHHhhhhcc-ch--HHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFLK-YR--GLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~~-~r--g~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++.|...+...+....++.++.++ +|  +...++...+.++|.++++++.+.+.+++|||..|.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~  177 (393)
T PRK15011        113 VFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL  177 (393)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence            333433344566666667776653 34  345688889999999999999999999999999886

>KOG3764|consensus

Probab=98.34  E-value=2.9e-07  Score=64.62  Aligned_cols=72  Identities=26%  Similarity=0.344  Sum_probs=64.8

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhcc--chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhHH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK--YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTEK   73 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~--~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~   73 (95)
                      +..+.+..|.++|+|.++...+...++++.||+  +|++++|+.....++|-.++||+++.+-+-.|.+.-|.+
T Consensus       158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV  231 (464)
T KOG3764|consen  158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV  231 (464)
T ss_pred             hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence            344566677999999999999999999999983  889999999999999999999999999999999988873

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.33  E-value=2.6e-06  Score=59.11  Aligned_cols=65  Identities=18%  Similarity=0.058  Sum_probs=57.2

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++++|++.+...|+...++.+++| ++|++++|+......+|..++|++++.+.+. .|+..+.
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~  157 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALA  157 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            345688999999999999999999998 5999999999999999999999999999885 4776554

>TIGR00889 2A0110 nucleoside transporter

Probab=98.30  E-value=3.7e-06  Score=58.90  Aligned_cols=67  Identities=15%  Similarity=0.131  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHH-HhhHHHHHHHHHHHHHHHhh------cChHHhhH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAI-SGSALGSIFLPPFLRYLLES------YGYRRDTE   72 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~-~~~~~g~~~~~~~~~~l~~~------~gw~~~~~   72 (95)
                      ++...++.|++.+...+....++++++| ++|++++|+.+ ...++|..++|++.+++.++      +||+.+|.
T Consensus       311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~  385 (418)
T TIGR00889       311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL  385 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence            3445678888888888888889999998 59999999997 67889999999999999987      46998876

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.28  E-value=3.8e-06  Score=58.75  Aligned_cols=61  Identities=13%  Similarity=-0.041  Sum_probs=52.6

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL   62 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~   62 (95)
                      ++..++..+++.|+|.|...++....+.+..| ++|++.+++.....++|..+++.+...+.
T Consensus        93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567778899999999998888888888887 58999999999999999999999888775

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.25  E-value=4e-06  Score=58.17  Aligned_cols=66  Identities=12%  Similarity=0.003  Sum_probs=54.9

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +...++.|++.+...+...+++.+.+| ++||+++|+......+|..+++.+.+++.+.+|.+..+.
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~  382 (417)
T PRK10489        316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASAS  382 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHH
Confidence            344456677766666667788889998 489999999999999999999999999999999887775

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.20  E-value=7.7e-06  Score=54.95  Aligned_cols=65  Identities=15%  Similarity=0.044  Sum_probs=55.5

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhHH
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTEK   73 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~   73 (95)
                      ..++.|++.+...+....++.+.+| ++|+++.|+......+|..+++++.+.+.++.||++.|.+
T Consensus       301 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~  366 (377)
T TIGR00890       301 TVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIV  366 (377)
T ss_pred             HHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Confidence            3456677777666666778889998 6999999999999999999999999999999999998874

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.15  E-value=1e-05  Score=54.77  Aligned_cols=65  Identities=15%  Similarity=0.121  Sum_probs=56.1

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++.|++.+...+.....+.+.+|+++++++++.+....+|..+++++.+.+.+.+||+..|.
T Consensus       293 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~  357 (375)
T TIGR00899       293 MLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYW  357 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence            34566777777777777788888899888899999999999999999999999999999998887

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.15  E-value=5.3e-06  Score=57.66  Aligned_cols=68  Identities=13%  Similarity=0.104  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHH-HHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGI-AISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .++..+++.|++.+...+....++.+.+| +.|++..+. .+....+|.++++++.+++.+.+||+..|.
T Consensus       317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~  386 (420)
T PRK09528        317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYL  386 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence            34455677787777666777788888898 577777655 567788999999999999999999998887

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.14  E-value=1.1e-05  Score=62.09  Aligned_cols=62  Identities=18%  Similarity=0.222  Sum_probs=55.9

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES   64 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~   64 (95)
                      +..++..+++.|++.+...++...++.+++| ++|++++|+..++..+|.++++++++++.+.
T Consensus       103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456667789999999999999999999998 5999999999999999999999999999876

>PRK10054 putative transporter; Provisional

Probab=98.14  E-value=1.4e-05  Score=55.50  Aligned_cols=63  Identities=6%  Similarity=-0.078  Sum_probs=51.2

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .+++.|.+.+...+......++.+| ++|+++.|+......+|..++|++.+.+.. +||+..|+
T Consensus       102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~  165 (395)
T PRK10054        102 FFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFW  165 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHH
Confidence            3455666656566667777788887 589999999999999999999999998875 79998886

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.11  E-value=9.1e-06  Score=54.64  Aligned_cols=63  Identities=21%  Similarity=0.073  Sum_probs=50.2

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhh
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDT   71 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~   71 (95)
                      ..++.|+......+....++++.+| ++|+++.|+.+....+|..+++++.+.+.+++||++.|
T Consensus       316 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       316 CLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            3344554433444455567888888 59999999999999999999999999999999999865

>TIGR01272 gluP glucose/galactose transporter

Probab=98.07  E-value=2e-05  Score=53.38  Aligned_cols=71  Identities=11%  Similarity=-0.071  Sum_probs=62.0

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh----------------
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES----------------   64 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~----------------   64 (95)
                      ++..|+...++.|+|.+..-+.+..++++..+ +++++.+++.....++|..++|.+.+.++..                
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            45678888899999999999999999999987 5899999999999999999999999988832                


Q ss_pred             cChHHhhH
Q psy12271         65 YGYRRDTE   72 (95)
Q Consensus        65 ~gw~~~~~   72 (95)
                      ..|++.|.
T Consensus        89 ~~~~~~yl   96 (310)
T TIGR01272        89 AKVHTPYL   96 (310)
T ss_pred             HHHHHHHH
Confidence            46888777

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.06  E-value=4.1e-05  Score=52.70  Aligned_cols=67  Identities=10%  Similarity=-0.159  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .+...++.|++.+...+.....+.+..|++|++++|+......+|..+++++.+.+.+++|++..|+
T Consensus       297 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~  363 (390)
T PRK03545        297 LSVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGY  363 (390)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHH
Confidence            3345567777766655666677778788899999999999999999999999999999999999887

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.06  E-value=2.1e-05  Score=54.34  Aligned_cols=64  Identities=16%  Similarity=0.132  Sum_probs=52.0

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..++.+++.+...+.......+.+|++||+++++.+....+|..+++.+.+.+.+.+||+..|.
T Consensus       311 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~  374 (393)
T PRK15011        311 LQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFW  374 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3444555555555555566788899889999999999999999999999999999999998876

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.04  E-value=2.8e-05  Score=51.62  Aligned_cols=68  Identities=24%  Similarity=0.367  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..+...++.|++.+...+.....+.+.+| ++|++.+|+......+|..+++++.+.+.+..+|+..+.
T Consensus       267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~  335 (352)
T cd06174         267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFL  335 (352)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHH
Confidence            34455678899999999999999999998 699999999999999999999999999999999998876

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10133 L-fucose transporter; Provisional

Probab=98.04  E-value=2.9e-05  Score=54.83  Aligned_cols=61  Identities=15%  Similarity=0.048  Sum_probs=49.4

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLL   62 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~   62 (95)
                      ++..++..++++|+|.|...++...++.++.|+ +|...+++.....++|..+++.++..+.
T Consensus       116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788999999999999998988888775 6666789999988899888888876543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.00  E-value=2.2e-05  Score=53.98  Aligned_cols=63  Identities=11%  Similarity=0.047  Sum_probs=52.3

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES   64 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~   64 (95)
                      ++..++..++++|++.+...+.....+.++.+ ++|++++++...+..+|..+++++.+.+.+.
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            34455667799999998888877777777776 6999999999999999999999999988764

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.99  E-value=2.8e-05  Score=56.10  Aligned_cols=61  Identities=18%  Similarity=0.207  Sum_probs=53.0

Q ss_pred             HHHhhccccchhHHHHHhhhhcc---chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         12 FVGIGAGLSFPPGIFIVTSYFLK---YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        12 l~G~g~g~~~~~~~~~~~~~f~~---~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +.++|.|...+...+++++.||+   +|..+.++...+..+|..++|.+.+++.+.+|||+.|.
T Consensus       109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~  172 (493)
T PRK15462        109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFG  172 (493)
T ss_pred             HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHH
Confidence            34466676677777899999973   69999999999999999999999999999999999887

>TIGR00897 2A0118 polyol permease family

Probab=97.98  E-value=5.8e-05  Score=52.34  Aligned_cols=66  Identities=14%  Similarity=0.109  Sum_probs=53.2

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhHH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTEK   73 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~   73 (95)
                      +...++.|++.+...+ ....+.+..|++||++.|+.+....+|..++|++.+.+.+.+||+..+++
T Consensus       320 ~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~  385 (402)
T TIGR00897       320 LIIAIALGIFLAGYVP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWI  385 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            3445666766665433 34566777788999999999999999999999999999999999988773

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.96  E-value=2.2e-05  Score=53.88  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++...++.|++.+...+...+.+.+..| ++||+++++......+|..++|++.+.+.+++||++.|.
T Consensus       314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~  381 (408)
T PRK09874        314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFL  381 (408)
T ss_pred             HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHH
Confidence            3445567888888888888787777777 589999999999999999999999999999999999887

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.93  E-value=1.6e-07  Score=65.56  Aligned_cols=71  Identities=15%  Similarity=0.144  Sum_probs=58.1

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh---hcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE---SYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~---~~gw~~~~~   72 (95)
                      ++..+...+++.|++.|...+....++.+..| ++|++...+......+|..++..+...+..   ..+||..+.
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~  175 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLI  175 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45667778899999999999999999999997 699999999999999998887776654433   245998765

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254|consensus

Probab=97.89  E-value=5.6e-05  Score=54.25  Aligned_cols=84  Identities=14%  Similarity=0.023  Sum_probs=65.4

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh--cChHHhhH------
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES--YGYRRDTE------   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~--~gw~~~~~------   72 (95)
                      ++..++..|++.|+|.|........++++.-| +.||...++......+|..++ .+.+...++  ++||..+.      
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~  219 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPA  219 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHH
Confidence            45678889999999999998888899999998 599999999999999888777 666665554  48996655      


Q ss_pred             -----HhccCccchhhhhH
Q psy12271         73 -----KVREKGEEEEEEEE   86 (95)
Q Consensus        73 -----~~~~~p~~~~~~~~   86 (95)
                           .+.-.||++++.-.
T Consensus       220 ~~~~~~~~~~pesp~~L~~  238 (513)
T KOG0254|consen  220 VILALGMLFLPESPRWLIE  238 (513)
T ss_pred             HHHHHHHHhCCCChHHHHH
Confidence                 22346666655543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.87  E-value=9.1e-05  Score=50.46  Aligned_cols=63  Identities=16%  Similarity=0.114  Sum_probs=51.5

Q ss_pred             HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhHH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTEK   73 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~   73 (95)
                      ++.|+..+...+.....+.+.+| ++|++++|+......+|..++|++.+++.++.| |+..+..
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            44454445555666678889998 599999999999999999999999999999999 8877653

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.83  E-value=9.2e-05  Score=49.59  Aligned_cols=62  Identities=16%  Similarity=0.059  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG   66 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g   66 (95)
                      .++...++.|++.+...+....++.+.+| ++|+++.|+......++..+++++.+.+.+.+|
T Consensus       303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       303 LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34455678888888888888899999998 589999999999999999999999999988765

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.82  E-value=3.2e-05  Score=52.23  Aligned_cols=67  Identities=16%  Similarity=0.064  Sum_probs=53.9

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHH-HHhhHHHHHHHHHHHHHHHhhcC-hHHhhHH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIA-ISGSALGSIFLPPFLRYLLESYG-YRRDTEK   73 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~-~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~   73 (95)
                      +...++.|++.+...++....+.+.+| ++|++++++. ..+..+|..++|++.+++.++.| |+..++.
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            334456677777778888899999998 5899999984 56667889999999999999998 8877653

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.77  E-value=0.00012  Score=49.23  Aligned_cols=53  Identities=19%  Similarity=0.228  Sum_probs=48.6

Q ss_pred             cchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271         20 SFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE   72 (95)
Q Consensus        20 ~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~   72 (95)
                      ..+....++.+.+| ++|++++|+......+|..+++.+.+.+.+..| |+..|.
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~  382 (399)
T TIGR00893       328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALM  382 (399)
T ss_pred             hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHH
Confidence            67888889999998 599999999999999999999999999999988 998876

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.77  E-value=0.00011  Score=51.52  Aligned_cols=48  Identities=17%  Similarity=0.014  Sum_probs=43.5

Q ss_pred             HHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         25 IFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        25 ~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...+++.+| ++|++++|+.+....+|..++|++.+++.+.+||+..|.
T Consensus       359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~  407 (434)
T PRK11663        359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFV  407 (434)
T ss_pred             HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHH
Confidence            345678887 599999999999999999999999999999999999887

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.77  E-value=0.00014  Score=51.52  Aligned_cols=47  Identities=23%  Similarity=0.245  Sum_probs=40.7

Q ss_pred             HHHhhhhc-cchHHHHHHHHHhhHH-HHHHHHHHHHHHHh------------hcChHHhhH
Q psy12271         26 FIVTSYFL-KYRGLANGIAISGSAL-GSIFLPPFLRYLLE------------SYGYRRDTE   72 (95)
Q Consensus        26 ~~~~~~f~-~~rg~a~gi~~~~~~~-g~~~~~~~~~~l~~------------~~gw~~~~~   72 (95)
                      ..+.+.+| +.||++.|+.+....+ |..+++++.+++.+            ..||+..|.
T Consensus       372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~  432 (467)
T PRK09556        372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFA  432 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHH
Confidence            45668898 4999999999988886 77999999999999            678999887

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.75  E-value=0.00017  Score=49.63  Aligned_cols=63  Identities=14%  Similarity=0.111  Sum_probs=53.3

Q ss_pred             HHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         10 GVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        10 ~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .++.|++....+|.....+.+..|+ +++.+.+......++|..++|++.+++.+++||++.|.
T Consensus       292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~  355 (381)
T PRK03633        292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFI  355 (381)
T ss_pred             HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence            3556666566788888888999875 77888888888999999999999999999999998887

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.69  E-value=0.00031  Score=49.54  Aligned_cols=47  Identities=17%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             HHHhhhhc-cchHHHHHHHHHhhHHHHHH-HHHHHHHHHhhcChHHhhH
Q psy12271         26 FIVTSYFL-KYRGLANGIAISGSALGSIF-LPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        26 ~~~~~~f~-~~rg~a~gi~~~~~~~g~~~-~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..+.+.+| ++||+++|+.+....+|..+ +|.+.+++.+++||+..|.
T Consensus       370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~  418 (452)
T PRK11273        370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM  418 (452)
T ss_pred             HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHH
Confidence            34567888 58999999998887787654 7899999999999998886

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.67  E-value=0.0002  Score=50.06  Aligned_cols=67  Identities=18%  Similarity=0.191  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-ChHHhhH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESY-GYRRDTE   72 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~   72 (95)
                      .+...++.|+|.+......-.++-++||||-+..+|++.+..++|..+++.+...+.++. |||+...
T Consensus       102 L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~  169 (395)
T COG2807         102 LFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG  169 (395)
T ss_pred             HHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence            344457788888888888889999999999999999999999999888888888888777 7998665

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.67  E-value=0.00025  Score=50.60  Aligned_cols=64  Identities=16%  Similarity=0.008  Sum_probs=43.7

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhh
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDT   71 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~   71 (95)
                      ...++.|++.+........++.+.|| +.|++++|+......++..++|.+.+++.+..+ |+..+
T Consensus       347 ~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~  412 (490)
T PRK10642        347 AGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPA  412 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence            33455555555445555667778898 599999998555555667888999999887654 56433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.67  E-value=0.00017  Score=54.43  Aligned_cols=59  Identities=7%  Similarity=-0.036  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES   64 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~   64 (95)
                      +++..++.|+..+..++....++++++| ++|++++|+..+...+|.+++|++.+.+...
T Consensus       651 ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~  710 (742)
T TIGR01299       651 MIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI  710 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344456676667778888889999999 5999999999999999999999999988763

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.64  E-value=0.00016  Score=49.86  Aligned_cols=51  Identities=24%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             hhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         22 PPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        22 ~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +....++++.+| ++|++++++......+|.++++.+.+.+.++.||++.|+
T Consensus       402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~  453 (481)
T TIGR00879       402 PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFI  453 (481)
T ss_pred             CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceeh
Confidence            455566789998 599999999999999999999999999999999998765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03699 putative transporter; Provisional

Probab=97.58  E-value=0.00035  Score=48.31  Aligned_cols=65  Identities=6%  Similarity=-0.009  Sum_probs=53.8

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++.|++.+..++.......+..|++++...++......+|..++|++.+++.+.+|++..++
T Consensus       299 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~  363 (394)
T PRK03699        299 YAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALL  363 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhh
Confidence            34466777666677777777777777777888999999999999999999999999999998876

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.56  E-value=0.00023  Score=52.57  Aligned_cols=70  Identities=20%  Similarity=0.232  Sum_probs=51.6

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..-|+....+.|+|.|..... ...+++..| |.|....++.....-....+++.+.+.+..+-+|||+|+
T Consensus       130 ~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~  200 (599)
T PF06609_consen  130 NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFY  200 (599)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHH
Confidence            3456778888899987766543 445889998 788888777766655555566777777766779999998

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.48  E-value=0.0012  Score=45.50  Aligned_cols=57  Identities=14%  Similarity=0.030  Sum_probs=44.6

Q ss_pred             hccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         16 GAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        16 g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..+...+..-.+..++.+ ++++...+....+..+|..+++.+.+++.+++|||..|+
T Consensus       110 ~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~  167 (390)
T TIGR02718       110 ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFL  167 (390)
T ss_pred             HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            333344444455667776 466888888999999999999999999999999998887

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.47  E-value=0.00052  Score=47.29  Aligned_cols=65  Identities=18%  Similarity=0.084  Sum_probs=51.8

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE   72 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~   72 (95)
                      ...++.|++.+...+....++.+.+| ++|++++|+......+|..++|++.+.+.++.+ |...+.
T Consensus       313 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~  379 (406)
T PRK11551        313 LAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIG  379 (406)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHH
Confidence            34456677666667777788899998 599999999999999999999999999988654 444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.47  E-value=0.00076  Score=46.49  Aligned_cols=67  Identities=4%  Similarity=-0.042  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHH-HhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAI-SGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~-~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..++...++.|+..+...++...++++. | ++|++..++++ ...++|..+++.+.+++.+++|. ..|.
T Consensus       294 ~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~  362 (382)
T TIGR00902       294 PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFV  362 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence            3344456899999999999999999988 7 58899999986 57889999999999999999986 4444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG0569|consensus

Probab=97.45  E-value=0.00053  Score=49.52  Aligned_cols=71  Identities=18%  Similarity=0.103  Sum_probs=58.6

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHH-HHHH-hhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFL-RYLL-ESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~-~~l~-~~~gw~~~~~   72 (95)
                      ...+++..+++.|+..|.......-++.+.-| +.||........+..+|..++..++ ..+. +.-.|++.+.
T Consensus       115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~  188 (485)
T KOG0569|consen  115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLA  188 (485)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHH
Confidence            45778899999999999988888889999999 5999999999999999999986555 3444 3345988775

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.43  E-value=0.0013  Score=46.28  Aligned_cols=59  Identities=17%  Similarity=0.204  Sum_probs=43.0

Q ss_pred             Hhhccccc-hhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHH------HHhhcChHHhhH
Q psy12271         14 GIGAGLSF-PPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRY------LLESYGYRRDTE   72 (95)
Q Consensus        14 G~g~g~~~-~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~------l~~~~gw~~~~~   72 (95)
                      +.+.+..+ +....++++.+| ++|++++|+......+|.++++.+.+.      +.++++|++.|+
T Consensus       374 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  440 (479)
T PRK10077        374 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYW  440 (479)
T ss_pred             HHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHH
Confidence            33444333 566788999998 599999999998888888877655543      446788887775

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.42  E-value=0.0008  Score=48.10  Aligned_cols=70  Identities=17%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +..++...++.|+|+....|.....+++.-|+ .||+++|++.....+|..+++.+........+|.+.|.
T Consensus       381 ~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~  451 (475)
T TIGR00924       381 PWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFG  451 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence            33455566889999999999999999999984 99999999999999999999999988776667777665

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.40  E-value=0.0005  Score=48.60  Aligned_cols=52  Identities=15%  Similarity=0.139  Sum_probs=44.8

Q ss_pred             chhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         21 FPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        21 ~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .+....++.+.+| ++|++++|+......+|..++|.+.+.+.+.+||+..+.
T Consensus       384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~  436 (496)
T PRK03893        384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALA  436 (496)
T ss_pred             chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHH
Confidence            3445567788888 599999999999999999999999999999999997764

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.39  E-value=0.001  Score=46.89  Aligned_cols=61  Identities=18%  Similarity=0.256  Sum_probs=53.3

Q ss_pred             HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHH-hhHHHHHHHHHHHHHHHhhcChHHhh
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAIS-GSALGSIFLPPFLRYLLESYGYRRDT   71 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~-~~~~g~~~~~~~~~~l~~~~gw~~~~   71 (95)
                      ++.|+..+..+.++..++++..| +.|+++.+++.. ..++|..++..++|++.+++|-+..|
T Consensus       309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~  371 (400)
T PF03825_consen  309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF  371 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence            45899999999999999999999 589999999865 57899999999999999998866544

>TIGR01272 gluP glucose/galactose transporter

Probab=97.35  E-value=0.00065  Score=46.03  Aligned_cols=61  Identities=15%  Similarity=0.226  Sum_probs=52.9

Q ss_pred             HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++.|++.+..+|...+...+.+|++.+.+.++. ....+|..+.|++.+.+.+.+|.+..|+
T Consensus       238 ~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       238 LALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            467889999999999999999998778888886 4566899999999999999999888776

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00895 2A0115 benzoate transport

Probab=97.34  E-value=0.00053  Score=46.47  Aligned_cols=56  Identities=21%  Similarity=0.251  Sum_probs=48.4

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYL   61 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l   61 (95)
                      .+...++.|++.+...+....++.+.+| ++|++++|+......+|..++|++.+++
T Consensus       341 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       341 LLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            3445577888888888888999999998 5999999999999999999999998875

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.33  E-value=0.0018  Score=45.02  Aligned_cols=65  Identities=14%  Similarity=0.058  Sum_probs=55.6

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++.|++.+...+...+.+.+..|++++++.++......+|..+++.+.+++.+.+|++..+.
T Consensus       310 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~  374 (394)
T PRK10213        310 GVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLM  374 (394)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHH
Confidence            34567788888888888888888888888888898888999999999999999999999887776

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.27  E-value=0.00059  Score=47.08  Aligned_cols=61  Identities=10%  Similarity=0.001  Sum_probs=41.1

Q ss_pred             HHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         10 GVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        10 ~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +++.|++.+...+....++.+. .++++...|.......+|..+++++.+.+.+ ++||..|+
T Consensus       106 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~  166 (396)
T TIGR00882       106 GLYLGFVFSAGAGAIEAYIEKV-SRNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFW  166 (396)
T ss_pred             HHHHHHHhccchhhHHHHHHHh-hhhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHH
Confidence            4455555555555544443332 2344567788888889999999999887754 69998886

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.25  E-value=0.0024  Score=44.29  Aligned_cols=49  Identities=20%  Similarity=0.201  Sum_probs=41.6

Q ss_pred             hhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHh
Q psy12271         22 PPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRD   70 (95)
Q Consensus        22 ~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~   70 (95)
                      +....++.+.+| ++||+++|+......++..++|.+.+++.+.+|....
T Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~  389 (426)
T PRK12307        340 GLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA  389 (426)
T ss_pred             HHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence            334456788998 5899999999999999999999999999998887654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.23  E-value=0.00056  Score=48.19  Aligned_cols=59  Identities=8%  Similarity=0.031  Sum_probs=43.6

Q ss_pred             HhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc---ChHHhhH
Q psy12271         14 GIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESY---GYRRDTE   72 (95)
Q Consensus        14 G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~---gw~~~~~   72 (95)
                      +.+.+...+.......+..|+.+|.++|+.+....+|..++|.+.+++.+..   +|+..|.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~  433 (465)
T TIGR00894       372 NAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFL  433 (465)
T ss_pred             HHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHH
Confidence            3333333444444555667889999999999999999999999999987653   3777766

>PRK10504 putative transporter; Provisional

Probab=97.22  E-value=0.002  Score=45.43  Aligned_cols=60  Identities=12%  Similarity=0.026  Sum_probs=50.4

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChH
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR   68 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~   68 (95)
                      ..++.|++.+..+++...++.+-+| +.++.+.++.+....+|..+++.+.+.+.+..|+.
T Consensus       359 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        359 VLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3456778878778888888888887 69999999999999999999999999988877653

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.13  E-value=0.0026  Score=43.99  Aligned_cols=62  Identities=11%  Similarity=-0.169  Sum_probs=47.4

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHH
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRR   69 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~   69 (95)
                      ...++.|+|.+...+..........+++||++.++......+|..+++.+.+.+.+..++..
T Consensus       314 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  375 (406)
T PRK15402        314 AGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL  375 (406)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence            34456777777666655454444445799999999999999999999999999888777654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.12  E-value=0.0037  Score=43.08  Aligned_cols=61  Identities=16%  Similarity=0.199  Sum_probs=50.3

Q ss_pred             HHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         12 FVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        12 l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +.+++.+...+.....+.++.+  +++++..++.++...+|..+++.+.+.+.+..|++..|.
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~  374 (390)
T TIGR02718       312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFL  374 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            3445556666777777777764  578999999999999999999999999999999988876

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.12  E-value=0.0015  Score=43.42  Aligned_cols=56  Identities=13%  Similarity=0.128  Sum_probs=43.1

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLES   64 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~   64 (95)
                      +.++.|.+.+....++.....+.||++||++.|+.-...+++..+...+...+.+.
T Consensus       102 ~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen  102 FLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            33455565555556666666688999999999999999999999988888776654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.11  E-value=0.0022  Score=46.71  Aligned_cols=68  Identities=18%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +++...++.|++.+...|+-..++.+..|+ +...++++..+..++...++|.+++.++..+|-.++|.
T Consensus       105 ~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~  173 (524)
T PF05977_consen  105 LLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL  173 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            445566899999999999999999999995 88999999999999999999999999999888888776

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.10  E-value=0.0021  Score=44.66  Aligned_cols=67  Identities=15%  Similarity=0.160  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhh-c-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-------hcChHHhhH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYF-L-KYRGLANGIAISGSALGSIFLPPFLRYLLE-------SYGYRRDTE   72 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f-~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~~~   72 (95)
                      ++...++.+++.++..++..++..+.. + ++|+++.++...+..+|..+.+.+...+..       ..|||+.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~  177 (437)
T TIGR00792       102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFAL  177 (437)
T ss_pred             HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHH
Confidence            344446667777776666667777766 3 699999999988888887777666555542       468998765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0253|consensus

Probab=97.09  E-value=0.0026  Score=45.23  Aligned_cols=69  Identities=17%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++....+++-+.|+|.|. +|...++-.+.-| .+|.+-+-.. .-+.+|.++...+...++.++||||.+.
T Consensus       165 nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~  234 (528)
T KOG0253|consen  165 NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLF  234 (528)
T ss_pred             CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            344455666778888888 7777777777777 4887776666 7788999999999999999999999765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.09  E-value=0.00076  Score=46.95  Aligned_cols=57  Identities=21%  Similarity=0.088  Sum_probs=48.7

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY   65 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~   65 (95)
                      ..++.|++.+...|...+++.+..| ++||+++|+.+....+|..+++.+.+++.+..
T Consensus       303 ~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        303 LICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             HHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence            3455677777777788889999998 59999999999999999999999999998763

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.06  E-value=0.0042  Score=44.58  Aligned_cols=57  Identities=14%  Similarity=0.250  Sum_probs=47.9

Q ss_pred             hccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         16 GAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        16 g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..|...++...+..+..++ .+++..++.++...+|..+.+++.+++.+.+||+..|.
T Consensus       329 ~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~  386 (491)
T PRK11010        329 CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYL  386 (491)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            3444556667777888874 88999999999999999999999999999999998776

>PRK09952 shikimate transporter; Provisional

Probab=97.06  E-value=0.0045  Score=43.59  Aligned_cols=62  Identities=18%  Similarity=0.236  Sum_probs=46.7

Q ss_pred             HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHH-HhhHHHHHHHHHHHHHHHhhc--ChHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAI-SGSALGSIFLPPFLRYLLESY--GYRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~-~~~~~g~~~~~~~~~~l~~~~--gw~~~~~   72 (95)
                      ++.+++.+...+....++++.|| +.|+++.++.. .+..+|..++|.+.+++.+..  +|+..+.
T Consensus       351 ~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~  416 (438)
T PRK09952        351 MLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAI  416 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            44466666667777788999999 58888988854 455688999999999998754  3766554

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.05  E-value=0.0016  Score=45.28  Aligned_cols=40  Identities=15%  Similarity=0.053  Sum_probs=33.6

Q ss_pred             hccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         32 FLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        32 f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++++++++.|.......+|..+++++.+.+.+ .+|++.|+
T Consensus       135 ~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~  174 (420)
T PRK09528        135 VSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFW  174 (420)
T ss_pred             HHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHH
Confidence            34567888899999999999999999998876 58998877

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.01  E-value=0.0043  Score=42.72  Aligned_cols=65  Identities=3%  Similarity=-0.106  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHH-HhhHHHHHHHHHHHHHHHhhcChH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAI-SGSALGSIFLPPFLRYLLESYGYR   68 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~-~~~~~g~~~~~~~~~~l~~~~gw~   68 (95)
                      ..++...++.|++.+...+....++.+..+.+++++.++.. ....+|..+++.+.+.+.+.+|+.
T Consensus       294 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~  359 (382)
T PRK11128        294 PWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG  359 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            34455667888888877788778777775567889999886 566788899999999999999874

>KOG2615|consensus

Probab=97.00  E-value=0.00037  Score=49.24  Aligned_cols=61  Identities=23%  Similarity=0.185  Sum_probs=51.7

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE   63 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~   63 (95)
                      +++.+++.|++.|+.=| ...+.-+++++.++ |+|+++++.+....++|.+++|.+++++.+
T Consensus       120 ~F~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  120 NFAAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            45677887899998644 34555688899986 799999999999999999999999999988

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.97  E-value=0.0042  Score=43.08  Aligned_cols=62  Identities=19%  Similarity=0.202  Sum_probs=50.1

Q ss_pred             HHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~   72 (95)
                      ++.|++.+..++.......+.++  ++|+++.|+......++..++|++.+++.++.| +...|.
T Consensus       300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~  364 (393)
T PRK09705        300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWA  364 (393)
T ss_pred             HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH
Confidence            45677878777777666667663  489999999999999999999999999999886 555554

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=96.96  E-value=0.0015  Score=45.61  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=41.0

Q ss_pred             HHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhHH
Q psy12271         26 FIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTEK   73 (95)
Q Consensus        26 ~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~   73 (95)
                      ....+.+| ++|++++|+.+....+|.+++|.+.+.+.+..| |++.|++
T Consensus       356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~  405 (412)
T TIGR02332       356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWF  405 (412)
T ss_pred             hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHH
Confidence            34455677 699999999999999999999999999999875 9988764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.95  E-value=0.011  Score=41.07  Aligned_cols=63  Identities=16%  Similarity=0.183  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc--------cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL--------KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR   68 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~--------~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~   68 (95)
                      ++...++.|++.+...+...+++++..+        +++|.+.|+.+....+|..+++.+.+.+.+..|+.
T Consensus       314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       314 ILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3344466778888777777777777643        35799999999999999999999999999888774

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.91  E-value=0.0027  Score=43.84  Aligned_cols=67  Identities=15%  Similarity=0.115  Sum_probs=47.3

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHH-HHHhhHHHHHHHHHHHHHHHhhcChHHhhHH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGI-AISGSALGSIFLPPFLRYLLESYGYRRDTEK   73 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~   73 (95)
                      +...++.|++...........+.+.++ +.+++..+. .+....+|.++++.+.+++.+.+|++..|.+
T Consensus       311 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~  379 (396)
T TIGR00882       311 VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLV  379 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence            344566776654443444445555565 355665555 5678899999999999999999999998874

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.89  E-value=0.011  Score=37.63  Aligned_cols=70  Identities=26%  Similarity=0.438  Sum_probs=54.5

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhcc--chHHHHHHHHH-hhHHHHHHHHHHHHHHHhh--cChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK--YRGLANGIAIS-GSALGSIFLPPFLRYLLES--YGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~--~rg~a~gi~~~-~~~~g~~~~~~~~~~l~~~--~gw~~~~~   72 (95)
                      ...++..+++.|++.+...+....++.+++|+  +|+...++... ...+|..+++.+.+.+...  .+||..|.
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL  168 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            34555666778999888899999999999995  89999999988 4777778877666665543  68888665

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.84  E-value=0.00062  Score=49.16  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc--c-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL--K-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~--~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +|+.. .+.++|.|...+...+++.+.+|  + ||-...++..++.++|+.+.|.+.+++.+++||+..|-
T Consensus       120 l~i~L-~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~  189 (498)
T COG3104         120 LYIGL-ALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFG  189 (498)
T ss_pred             HHHHH-HHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHH
Confidence            34444 45669999999999999999997  2 88999999999999999999999999999999998886

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.84  E-value=0.0068  Score=44.24  Aligned_cols=66  Identities=14%  Similarity=-0.030  Sum_probs=54.7

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +...++.|++.........+.+-+..| +.||++++++.+....+..++..+.+.+.+.+|.+.++.
T Consensus       311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~  377 (524)
T PF05977_consen  311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALL  377 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            334466777766666666777778888 599999999999999999999999999999999997775

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.83  E-value=0.0083  Score=43.29  Aligned_cols=67  Identities=12%  Similarity=0.077  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE   72 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~   72 (95)
                      |...+++.|+.+|.....+=++.++..|+ |.+...|++....-...+++|.+.+.+.+..| -|..+.
T Consensus       383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~  451 (477)
T PF11700_consen  383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL  451 (477)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            45566899999999999999999999996 88999999999999999999999999999887 666655

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=96.81  E-value=0.0014  Score=46.67  Aligned_cols=49  Identities=16%  Similarity=0.196  Sum_probs=34.8

Q ss_pred             hHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         23 PGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        23 ~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ....++.+..|++||.+.|+...+..+|+++++.+.+ .....+|+..|.
T Consensus       368 ~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~  416 (476)
T PLN00028        368 ATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGIS  416 (476)
T ss_pred             hhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHH
Confidence            3334445556789999999998888888888877654 222346887776

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=96.79  E-value=0.0064  Score=41.24  Aligned_cols=66  Identities=12%  Similarity=0.103  Sum_probs=47.5

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +...++.|++.+...+.......+.+|++|+++.++.+.....+..+.+++.+.+.+..+|...+.
T Consensus       304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       304 IGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHH
Confidence            334456778778778888888888888899999999988777666666666665555555554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.77  E-value=0.0054  Score=47.84  Aligned_cols=65  Identities=11%  Similarity=-0.101  Sum_probs=53.0

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-hcChHHhhH
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE-SYGYRRDTE   72 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~   72 (95)
                      ...++.|++.+...++..+++.+.+| ++||+++|+.+....++..+++++.+.+.. ..+....+.
T Consensus       339 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~  405 (1140)
T PRK06814        339 IDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL  405 (1140)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            34567788888888888899999998 599999999999999999999999888863 445555443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=96.73  E-value=0.017  Score=40.60  Aligned_cols=59  Identities=17%  Similarity=0.123  Sum_probs=48.9

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCh
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGY   67 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw   67 (95)
                      ..++.|+|.+...++....+.+.+| ++|+.++|+.+....+|..+++.+.+.+.++..+
T Consensus       354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~~  413 (485)
T TIGR00711       354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNRTQ  413 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888888877777777667777 6999999999999999999999999999876444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.69  E-value=0.0086  Score=41.20  Aligned_cols=62  Identities=18%  Similarity=0.128  Sum_probs=51.0

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHH
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRR   69 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~   69 (95)
                      ...++.|++.+...+...+...+.+|+++|++.++.+....+|..+++.+.+.+.....+..
T Consensus       304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~  365 (394)
T PRK11652        304 VPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSL  365 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHH
Confidence            34466778888888888888888899999999999999999999999999888766544443

>PRK10054 putative transporter; Provisional

Probab=96.67  E-value=0.0081  Score=41.78  Aligned_cols=66  Identities=9%  Similarity=-0.067  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .+...++.|+|.+...|.....+.+..| ++|+++.+..+ ...+|..++|++.+.+.+++|-...|.
T Consensus       301 ~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~  367 (395)
T PRK10054        301 WGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFV  367 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHH
Confidence            3445567788877777777778888888 58899988765 555899999999999999999887666

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=96.63  E-value=0.0057  Score=40.79  Aligned_cols=51  Identities=29%  Similarity=0.466  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLP   55 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~   55 (95)
                      ..+...++.|++.+...+....++.+.+| ++||++.|+......+|..++|
T Consensus       301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            34445677898888889999999999998 6999999999999999998876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11043 putative transporter; Provisional

Probab=96.54  E-value=0.016  Score=39.90  Aligned_cols=54  Identities=11%  Similarity=0.090  Sum_probs=43.9

Q ss_pred             HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLES   64 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~   64 (95)
                      .+.|++.+..++.......+.+|+++|+++|+.+.....+..+++++.+.+.+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        304 CVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            456777777788777777777888999999999988888888888888888764

>PRK15075 citrate-proton symporter; Provisional

Probab=96.51  E-value=0.0076  Score=42.27  Aligned_cols=58  Identities=17%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHH-hhHHHHHHHHHHHHHHHhhcChH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAIS-GSALGSIFLPPFLRYLLESYGYR   68 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~-~~~~g~~~~~~~~~~l~~~~gw~   68 (95)
                      ++.|++.+...+....++.+.+| ++|+++.++... +..++..++|.+.+++.+++|++
T Consensus       339 ~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        339 LWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            33455555555556677889998 599999998644 44456778999999999988864

>TIGR00898 2A0119 cation transport protein

Probab=96.45  E-value=0.011  Score=42.05  Aligned_cols=59  Identities=19%  Similarity=0.181  Sum_probs=45.3

Q ss_pred             HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhh
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDT   71 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~   71 (95)
                      ++.+++.+..++....+.++.+| +.|++++|+......+|.+++|++.+ + ...++...+
T Consensus       418 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~  477 (505)
T TIGR00898       418 VLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPL  477 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHH
Confidence            44455556667777888899999 58999999999999999999999888 3 334444443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.42  E-value=0.021  Score=39.60  Aligned_cols=59  Identities=17%  Similarity=0.290  Sum_probs=42.1

Q ss_pred             HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++.|++.+........++.+.+|.   +..++.....+++..+++++.+.+.+.+||+..|.
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~  373 (402)
T PRK11902        315 LCGGMGTAAFVALLMALCNRSFSA---TQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYL  373 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            345555566666677777777763   23455555567778777889999999999998886

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.41  E-value=0.0069  Score=42.53  Aligned_cols=47  Identities=19%  Similarity=0.215  Sum_probs=39.6

Q ss_pred             HHHhhhhc-cchHHHHHHHHHhhHHH-HHHHHHHHHHHHhhcChHHhhH
Q psy12271         26 FIVTSYFL-KYRGLANGIAISGSALG-SIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        26 ~~~~~~f~-~~rg~a~gi~~~~~~~g-~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..+.+.+| ++||+++|+.+....+| ..++|.+.+.+.++.||...|.
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~  416 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM  416 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHH
Confidence            35668888 59999999998877776 5688999999999999998887

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10133 L-fucose transporter; Provisional

Probab=96.40  E-value=0.0074  Score=42.72  Aligned_cols=63  Identities=6%  Similarity=0.117  Sum_probs=53.6

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE   72 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~   72 (95)
                      ..++.|++.+..+|...+...+.++++.+.+.++... ...|..+++++.+.+.+.+| -|..|.
T Consensus       353 ~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~  416 (438)
T PRK10133        353 ALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAEL  416 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHH
Confidence            3457899999999999999999999888888888875 44688899999999999988 787776

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.39  E-value=0.014  Score=42.05  Aligned_cols=56  Identities=13%  Similarity=0.074  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRY   60 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~   60 (95)
                      ..+...++.|+|+.+..|....++++.-| +.||+++|++..+..+|+.++..+...
T Consensus       384 ~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~  440 (500)
T PRK09584        384 WLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANL  440 (500)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556688999999999999999999999 599999999998888888887777653

>TIGR00788 fbt folate/biopterin transporter

Probab=96.34  E-value=0.0068  Score=43.36  Aligned_cols=59  Identities=19%  Similarity=0.148  Sum_probs=51.9

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG   66 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g   66 (95)
                      ...++.+++.+..+.+...++++..|+ ++|+..++.++..++|..+++.+++.+.+.+|
T Consensus       356 ~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       356 GDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             ehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            345677778788888889999999985 89999999999999999999999999999888

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00896 CynX cyanate transporter

Probab=96.30  E-value=0.022  Score=38.64  Aligned_cols=57  Identities=21%  Similarity=0.268  Sum_probs=46.7

Q ss_pred             HHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271         10 GVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESYG   66 (95)
Q Consensus        10 ~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g   66 (95)
                      .++.|++.+..++.....+.+..+  ++++.+.++......++..++|++.+++.+++|
T Consensus       292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467788888888877777665553  477999999998888999999999999998876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG3626|consensus

Probab=96.30  E-value=0.011  Score=44.84  Aligned_cols=63  Identities=27%  Similarity=0.245  Sum_probs=55.1

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY   65 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~   65 (95)
                      |.+++..-++.|+|....++..++++++... ++-.+.+|+......+|++++-.+++.+..-|
T Consensus       237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lY  300 (735)
T KOG3626|consen  237 FLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLY  300 (735)
T ss_pred             HHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHee
Confidence            4456667789999999999999999999997 58899999999999999999999999887644

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.27  E-value=0.025  Score=40.51  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=37.2

Q ss_pred             chhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271         21 FPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE   63 (95)
Q Consensus        21 ~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~   63 (95)
                      .+....+.++.|| +.|+++.|+.+....++.++++.+.+.+.+
T Consensus       410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~  453 (502)
T TIGR00887       410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ  453 (502)
T ss_pred             CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence            3445566789998 689999999999999999999999999887

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.26  E-value=0.029  Score=34.85  Aligned_cols=59  Identities=25%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYL   61 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l   61 (95)
                      +..++..+++.|++.+..+.+...+++++.+ ++|++-.++.......+.+++..+.-.+
T Consensus        89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667789999999999999999999987 5999999999999888888877766554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.25  E-value=0.014  Score=40.35  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhcc----chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK----YRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~----~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +|+.. ++.++|.|...+....++.+-|++    +|.....++..+..+|..++..+.+++-+++||...|.
T Consensus        36 ~~~gL-~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~  106 (372)
T PF00854_consen   36 FYIGL-ALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFG  106 (372)
T ss_dssp             HHHHH-HHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHH
T ss_pred             HHHHH-HHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhh
Confidence            34444 567999999999999999999962    56778888999999999999999999999999999987

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.23  E-value=0.017  Score=40.06  Aligned_cols=60  Identities=12%  Similarity=-0.042  Sum_probs=46.8

Q ss_pred             HHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .+.|++....++....+.++.+| +.||+++|+.+....+|.+++|++.+.+..  |-+..|.
T Consensus       288 ~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~  348 (368)
T TIGR00903       288 GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFT  348 (368)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHH
Confidence            33445555556667778899998 599999999999999999999999988873  6565554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=96.21  E-value=0.022  Score=40.80  Aligned_cols=58  Identities=14%  Similarity=0.126  Sum_probs=49.0

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES   64 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~   64 (95)
                      ....++.|+|.|...++....+.+..| ++++.+.++.+....+|..+++.+.+.+.++
T Consensus       355 ~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        355 WGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345577899999888878787778887 5999999999999999999999999998653

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.12  E-value=0.033  Score=39.58  Aligned_cols=59  Identities=15%  Similarity=0.104  Sum_probs=52.2

Q ss_pred             HHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChH
Q psy12271         10 GVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYR   68 (95)
Q Consensus        10 ~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~   68 (95)
                      .++.|+|.+..-.+-..++++.-| ++|+++.++...-.-+|.++...+.+.+++.|.-.
T Consensus        96 F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~  155 (403)
T PF03209_consen   96 FLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE  155 (403)
T ss_pred             HHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            367788888888888899999997 69999999999999999999999999999888644

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00788 fbt folate/biopterin transporter

Probab=96.06  E-value=0.0098  Score=42.54  Aligned_cols=68  Identities=12%  Similarity=-0.082  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhccchHH---HHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGL---ANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~---a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .+....++.+++.+...++.-.++.+..+++++.   +.++......+|..+++.+.+.+.+.++||..|+
T Consensus       122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~  192 (468)
T TIGR00788       122 VAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFL  192 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHH
Confidence            3444567788888888888889999998853333   3334444456899999999999999999999886

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.04  E-value=0.04  Score=42.90  Aligned_cols=57  Identities=14%  Similarity=0.071  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL   62 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~   62 (95)
                      .+...++.|++.++..++..+++.+.+| ++||+++|+.+....+|.++++.+...+.
T Consensus       325 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        325 VLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445577788888888888888888888 58999999999988888877766665544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.96  E-value=0.0016  Score=47.59  Aligned_cols=60  Identities=23%  Similarity=0.197  Sum_probs=2.9

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE   63 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~   63 (95)
                      .+++...++.|+|....++...+++++..+ ++-+..+|+..+...+|+.++-.+++.++.
T Consensus       142 ~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~  202 (539)
T PF03137_consen  142 YVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLR  202 (539)
T ss_dssp             ----------SSS------------------------------------------------
T ss_pred             HHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence            456667799999999999999999999997 588999999999999999998888877664

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=95.95  E-value=0.039  Score=39.35  Aligned_cols=70  Identities=16%  Similarity=0.200  Sum_probs=58.1

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHH-HHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIA-ISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~-~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .........+.|+-.++...+...++++.||+ -.++...+. +...++|.++.+++.|.+.+++|.+..|+
T Consensus       312 ~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyl  383 (412)
T PF01306_consen  312 PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYL  383 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHH
Confidence            34455667888988888999999999999985 445666664 78899999999999999999999998887

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=95.94  E-value=0.061  Score=37.03  Aligned_cols=60  Identities=15%  Similarity=-0.037  Sum_probs=37.5

Q ss_pred             HHHHhhccccchhHHH-HHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh-cChHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIF-IVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES-YGYRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~-~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~   72 (95)
                      ++.+++.....++... ...+.++ +.++.+  .......+|..++|++.+++.+. .+|++.+.
T Consensus       297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~  359 (382)
T PRK10091        297 FICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVAL  359 (382)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHH
Confidence            3444444433333333 3334343 344443  34667789999999999999985 68988877

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=95.94  E-value=0.047  Score=38.30  Aligned_cols=49  Identities=14%  Similarity=-0.018  Sum_probs=31.5

Q ss_pred             hhHHHHHhhhhc-cchHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcC-hHHhh
Q psy12271         22 PPGIFIVTSYFL-KYRGLANGIAISGSAL-GSIFLPPFLRYLLESYG-YRRDT   71 (95)
Q Consensus        22 ~~~~~~~~~~f~-~~rg~a~gi~~~~~~~-g~~~~~~~~~~l~~~~g-w~~~~   71 (95)
                      +....+++++|| +.|++++|+.+....+ .....|.+.+ +++..| |...+
T Consensus       355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~  406 (432)
T PRK10406        355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFF  406 (432)
T ss_pred             HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHH
Confidence            445567889998 5899999998765443 3444555556 445556 44333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=95.91  E-value=0.036  Score=39.98  Aligned_cols=56  Identities=11%  Similarity=0.107  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYL   61 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l   61 (95)
                      .+...++.|+|+++..++....+.+..|+ .+|.++|++.....+|..++..+.+..
T Consensus       382 ~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        382 IVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34456789999999999999999999984 899999999999999999888877544

>KOG2504|consensus

Probab=95.87  E-value=0.0063  Score=44.28  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~   72 (95)
                      +..+.++.++.|+..|........++.+..+ ++-..+.|+.....+++..++||+.+++.+..| |...|+
T Consensus       388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~  459 (509)
T KOG2504|consen  388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFY  459 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehh
Confidence            3456778888898888777777678889997 688999999999999999999999998888776 665554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=95.80  E-value=0.085  Score=37.45  Aligned_cols=62  Identities=13%  Similarity=0.113  Sum_probs=51.6

Q ss_pred             HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++.|+..+...+.-..-+++..|+.++.+.++.....++|..++..+++.+.+++|++...+
T Consensus       308 ~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~  369 (394)
T COG2814         308 FLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGW  369 (394)
T ss_pred             HHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence            44666655556666666777667999999999999999999999999999999999998776

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=95.66  E-value=0.061  Score=38.01  Aligned_cols=63  Identities=17%  Similarity=0.285  Sum_probs=55.5

Q ss_pred             HHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-ChHHhhH
Q psy12271         10 GVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESY-GYRRDTE   72 (95)
Q Consensus        10 ~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~   72 (95)
                      .++.|+|.|.+++.+...+....+  ++-+.-.|..+...++=..++|.+.+++.+.. +|+..+.
T Consensus       303 ~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~  368 (395)
T COG2807         303 ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLV  368 (395)
T ss_pred             HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHH
Confidence            489999999999999999999986  47788888899999999999999999999876 4887766

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=95.42  E-value=0.061  Score=38.88  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=48.0

Q ss_pred             HHHHhhccccchhHHHHHhhhhcc----------------------chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-h
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFLK----------------------YRGLANGIAISGSALGSIFLPPFLRYLLESYG-Y   67 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~~----------------------~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w   67 (95)
                      +...++.|....+...++.++||+                      +-|.+.|+......+|.++.|++.+...+..| +
T Consensus       353 ~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~  432 (462)
T PRK15034        353 MGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSP  432 (462)
T ss_pred             HHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCc
Confidence            344456666677788888888874                      66899999999999999999999998887654 5


Q ss_pred             HHhhH
Q psy12271         68 RRDTE   72 (95)
Q Consensus        68 ~~~~~   72 (95)
                      ...|+
T Consensus       433 ~~~~~  437 (462)
T PRK15034        433 VGAMK  437 (462)
T ss_pred             HHHHH
Confidence            54444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.40  E-value=0.07  Score=38.09  Aligned_cols=61  Identities=20%  Similarity=0.072  Sum_probs=52.5

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLE   63 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~   63 (95)
                      +.+|+..-++.|.|.+..-.++..+++...++ +...-+.+...-.++|..++|++++.++.
T Consensus       104 y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         104 YGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            45666666888889888888888999999974 77888999999999999999999999887

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=95.12  E-value=0.15  Score=35.42  Aligned_cols=64  Identities=11%  Similarity=0.063  Sum_probs=48.5

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhcc-c-hHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFLK-Y-RGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~~-~-rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++.|++.+...++..+.+.+.-|+ + +|++.++.+....++..++..+.+.+ ..+|-|..+.
T Consensus       298 ~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  363 (393)
T PRK11195        298 PLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAV  363 (393)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHH
Confidence            344577888777767676777666554 3 69999999999999999999888855 5677766555

>PRK09848 glucuronide transporter; Provisional

Probab=95.12  E-value=0.13  Score=36.15  Aligned_cols=61  Identities=15%  Similarity=0.152  Sum_probs=48.7

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhcc--------chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCh
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFLK--------YRGLANGIAISGSALGSIFLPPFLRYLLESYGY   67 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~~--------~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw   67 (95)
                      +...++.|+|.+...+...++.++-.|.        ++|...|+.+....+|..+++.+.+.+.+..|+
T Consensus       323 ~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3345677888888888877777776642        359999999999999999999999998877766

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=95.01  E-value=0.12  Score=37.56  Aligned_cols=48  Identities=15%  Similarity=0.036  Sum_probs=38.8

Q ss_pred             HhhccccchhHHHHHhhhhc-cch--HHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271         14 GIGAGLSFPPGIFIVTSYFL-KYR--GLANGIAISGSALGSIFLPPFLRYL   61 (95)
Q Consensus        14 G~g~g~~~~~~~~~~~~~f~-~~r--g~a~gi~~~~~~~g~~~~~~~~~~l   61 (95)
                      .++.....++.-+++++.+| ++|  +.+.++......+|+++++.+.+.+
T Consensus       125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667788889999998 333  6899999999999999999988765

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=94.95  E-value=0.062  Score=38.33  Aligned_cols=60  Identities=27%  Similarity=0.290  Sum_probs=49.7

Q ss_pred             HHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271         13 VGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE   72 (95)
Q Consensus        13 ~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~   72 (95)
                      .++..|.....+..++.++||++-|.+.|++.....+|.+..|...+...+..| ++.+|+
T Consensus       324 l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~  384 (417)
T COG2223         324 LFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFM  384 (417)
T ss_pred             HHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHH
Confidence            334444445566678889999999999999999999999999999999998888 777776

>PRK09669 putative symporter YagG; Provisional

Probab=94.87  E-value=0.17  Score=35.67  Aligned_cols=63  Identities=14%  Similarity=0.196  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-------c-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-------K-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYR   68 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-------~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~   68 (95)
                      ++...++.|++.+...+...+++++..+       + +.|...|+......+|..+++.+.+.+.+..|+.
T Consensus       322 ~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        322 IFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4445567888888888888888887764       1 3467788888888999999999999999888874

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=94.74  E-value=0.079  Score=37.23  Aligned_cols=62  Identities=11%  Similarity=0.086  Sum_probs=47.5

Q ss_pred             HHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc------ChHHhhH
Q psy12271         10 GVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESY------GYRRDTE   72 (95)
Q Consensus        10 ~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~------gw~~~~~   72 (95)
                      -++.|+..+.++|...++..+-.+++...+.+...++. +|..+.|++.+++.+..      +.+..|.
T Consensus       328 l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~  395 (410)
T TIGR00885       328 LTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFI  395 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-hccchHHHHHHHHHHHhcccccCccchHHH
Confidence            35677888888999999999999876655555555544 99999999999999954      3565554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=94.55  E-value=0.29  Score=34.27  Aligned_cols=55  Identities=16%  Similarity=0.077  Sum_probs=37.6

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLES   64 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~   64 (95)
                      ...++.++|.+...+......  +++  ..+|++.++.......+..+++...+++..+
T Consensus       317 ~~~~l~~~G~~~~~p~~~~~a--l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        317 LGTSLYAFGIGLIFPTLFRFT--LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHHHHHHHHHHHhHHHHHHH--hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344556777776666655432  343  3689999999888878888888887777553

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=94.26  E-value=0.024  Score=40.64  Aligned_cols=68  Identities=15%  Similarity=0.067  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSAL-GSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~-g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +....-++.|+-.-.--........+..|| --|++.|.......+ |...+..+.+++.+.+||.+.|.
T Consensus       348 l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi  417 (448)
T COG2271         348 LDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFI  417 (448)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHH
Confidence            333344555643332223344456677786 779999999999999 99999999999999999999887

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=94.19  E-value=0.23  Score=36.20  Aligned_cols=56  Identities=13%  Similarity=0.048  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHh-hHHHHHHHHHHHHHH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISG-SALGSIFLPPFLRYL   61 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~-~~~g~~~~~~~~~~l   61 (95)
                      .+...++.++|+-+..|...+.+++.-| |-||+.+|++... ..+|+.++..+.+..
T Consensus       380 l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        380 MVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445578899999999999999999999 5999999999774 467777777666654

>KOG2563|consensus

Probab=93.60  E-value=0.1  Score=37.74  Aligned_cols=59  Identities=15%  Similarity=0.131  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES   64 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~   64 (95)
                      ..+...+.+..+-........+.+.||+ ++|+.|..+-.++..+|..++..+-..+.++
T Consensus       143 ~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  143 THTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             hHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            3345566666666555555688999997 6999999999999888888877777766654

>PRK09669 putative symporter YagG; Provisional

Probab=93.58  E-value=0.61  Score=32.85  Aligned_cols=64  Identities=11%  Similarity=0.016  Sum_probs=41.6

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-------hcChHHhhH
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLE-------SYGYRRDTE   72 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~~~   72 (95)
                      ..++.+++..+..++-.++.+++.+  ++|++..++...+..+|..+++.+...+..       ..||+..+.
T Consensus       115 ~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~  187 (444)
T PRK09669        115 TYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMM  187 (444)
T ss_pred             HHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence            3345565666666777788888874  689988888877777776666554433332       346775543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=93.56  E-value=0.25  Score=34.61  Aligned_cols=68  Identities=18%  Similarity=0.204  Sum_probs=55.1

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc--------cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL--------KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRR   69 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~--------~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~   69 (95)
                      +..+++...++.|++.+..+....+++++..+        ++.|+..|+.....-++..+++.+.+.+++..|+..
T Consensus       314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~  389 (428)
T PF13347_consen  314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDA  389 (428)
T ss_pred             hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCC
Confidence            34556667788999999988888888888775        234899999999999999999999999888777654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=93.48  E-value=0.17  Score=36.31  Aligned_cols=62  Identities=16%  Similarity=0.139  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG   66 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g   66 (95)
                      -|+..+++.|..+|.....+=++.++..|+ |-++..|+++...-.+.+++|.+.+.+.+..|
T Consensus       343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG  405 (438)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence            367788999999999999999999999996 88999999999999999999999999887654

>KOG0252|consensus

Probab=93.46  E-value=0.026  Score=41.03  Aligned_cols=56  Identities=18%  Similarity=0.193  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYL   61 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l   61 (95)
                      ...+|++.|+|.|.-||.+.++.+++-. ++||.-.+++.+-.++|...+.++.-.+
T Consensus       147 L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv  203 (538)
T KOG0252|consen  147 LCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV  203 (538)
T ss_pred             HHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence            4568899999999999999999999997 5999988888777777666655555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.37  E-value=0.38  Score=34.34  Aligned_cols=56  Identities=16%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL   62 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~   62 (95)
                      +...+..|+-.|..|+-+...+.+-.+ ++|..++|....+-++|..++..++-.+-
T Consensus       339 f~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  339 FVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            345577888888889888888888786 69999999999999999998888776553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2325|consensus

Probab=93.25  E-value=0.29  Score=35.78  Aligned_cols=60  Identities=18%  Similarity=0.192  Sum_probs=41.5

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLL   62 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~   62 (95)
                      ..+++..|++.|+|.|.....=.-+.+.-.+++|-++++....+..+|..++|.+.....
T Consensus       130 ~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  130 KYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             HHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            346777889999997755444333344445678888888888877777777776665544

>TIGR00901 2A0125 AmpG-related permease

Probab=92.94  E-value=0.2  Score=33.98  Aligned_cols=40  Identities=15%  Similarity=0.044  Sum_probs=33.4

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhH
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSA   48 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~   48 (95)
                      ..++.+++.+...++..+++++.+| ++||+..|+.++..+
T Consensus       315 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       315 TITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            3456688888889999999999998 699999999877654

>KOG3762|consensus

Probab=92.81  E-value=0.11  Score=38.61  Aligned_cols=69  Identities=17%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHh-hHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISG-SALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~-~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .+.+-.-+++|+..+..+.+..++++..-| +-|..+.++.... .++|-.+++.+++.+.+.+|=|..|+
T Consensus       460 W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~  530 (618)
T KOG3762|consen  460 WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFR  530 (618)
T ss_pred             hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHH
Confidence            344445689999999999999999999997 5888899888554 46778888888888888898887776

>PRK10429 melibiose:sodium symporter; Provisional

Probab=92.49  E-value=0.75  Score=32.83  Aligned_cols=64  Identities=20%  Similarity=0.286  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-------c-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-------K-YRGLANGIAISGSALGSIFLPPFLRYLLESYGYR   68 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-------~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~   68 (95)
                      +++...++.|++.+...+...+++++..+       + +.|...|+.....-+|..+++.+.+.+.+..|+.
T Consensus       326 ~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~  397 (473)
T PRK10429        326 LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYV  397 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            34445567788888777777777777733       2 3467889999999999999999999988877763

>KOG0569|consensus

Probab=92.37  E-value=2.1  Score=31.39  Aligned_cols=70  Identities=19%  Similarity=0.060  Sum_probs=52.6

Q ss_pred             HHHhhcccc-chhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH------------HhccC
Q psy12271         12 FVGIGAGLS-FPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE------------KVREK   77 (95)
Q Consensus        12 l~G~g~g~~-~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~------------~~~~~   77 (95)
                      +..++.+.. -|...-+.++.|| ..|..++++......+++++.......+.+.+|= ..|.            ..+.-
T Consensus       376 ~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~l  454 (485)
T KOG0569|consen  376 LFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYL  454 (485)
T ss_pred             HHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhC
Confidence            334444443 4777889999998 5999999999999999999988888888887774 2222            45678


Q ss_pred             ccchh
Q psy12271         78 GEEEE   82 (95)
Q Consensus        78 p~~~~   82 (95)
                      ||++.
T Consensus       455 PETkg  459 (485)
T KOG0569|consen  455 PETKG  459 (485)
T ss_pred             cccCC
Confidence            88863

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=92.12  E-value=1  Score=34.05  Aligned_cols=62  Identities=15%  Similarity=0.047  Sum_probs=50.8

Q ss_pred             HHHHhhccccchhHHHHHhhhhc-c---chHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------ChHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFL-K---YRGLANGIAISGSALGSIFLPPFLRYLLESY-------GYRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~-~---~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-------gw~~~~~   72 (95)
                      .+..+|.|.+.++......+-|+ +   +|-....++..+.++|..+++++.+++.+.+       +|..+|.
T Consensus        93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~  165 (654)
T TIGR00926        93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG  165 (654)
T ss_pred             HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence            44567888899999999998886 2   4778889999999999999999999987554       5888775

>PF13347 MFS_2: MFS/sugar transport protein

Probab=91.41  E-value=0.68  Score=32.47  Aligned_cols=66  Identities=17%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------ChHHhhH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESY-------GYRRDTE   72 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-------gw~~~~~   72 (95)
                      +...++..++......+..++..+..+  ++|.+..++-.....+|..+...+...+...+       +|++...
T Consensus       107 ~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  107 FVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            334455577888888888889999986  59999999998888888876666666555433       4776555

>KOG2532|consensus

Probab=91.06  E-value=0.29  Score=35.42  Aligned_cols=41  Identities=17%  Similarity=0.143  Sum_probs=36.9

Q ss_pred             hccchHHHHHHHHHhhHHHHHHHHHHHHHHHhh---cChHHhhH
Q psy12271         32 FLKYRGLANGIAISGSALGSIFLPPFLRYLLES---YGYRRDTE   72 (95)
Q Consensus        32 f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~---~gw~~~~~   72 (95)
                      -|++-+.++|+.+....+..++.|.+.+.+.++   -.||.+|.
T Consensus       387 apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~  430 (466)
T KOG2532|consen  387 APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFL  430 (466)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHH
Confidence            678999999999999999999999999999942   37999998

>KOG4686|consensus

Probab=90.89  E-value=0.034  Score=38.66  Aligned_cols=61  Identities=18%  Similarity=0.166  Sum_probs=48.7

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE   63 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~   63 (95)
                      +..++..+|+.|+|.-...++...++..||+ |+.+.++|+..+..-+|+.+--.+.+++.+
T Consensus       136 Fw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  136 FWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             HHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence            4456778899999866778888899999998 899999999998888887766555555544

>KOG0252|consensus

Probab=90.68  E-value=0.25  Score=36.17  Aligned_cols=49  Identities=20%  Similarity=0.266  Sum_probs=43.3

Q ss_pred             HHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh-----hcChHHhhHH
Q psy12271         25 IFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE-----SYGYRRDTEK   73 (95)
Q Consensus        25 ~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~-----~~gw~~~~~~   73 (95)
                      ..+-++.|| +-|++.-|+.....-+|.+++.....++.+     ..|-|+++++
T Consensus       428 fivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i  482 (538)
T KOG0252|consen  428 FIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFII  482 (538)
T ss_pred             EEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHH
Confidence            345678899 699999999999999999999999999998     7788888873

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=90.50  E-value=1.5  Score=31.99  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=45.0

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLE   63 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~   63 (95)
                      ....++.+++..+...+-.++..+.-+  ++|....++-.....+|..+...+...+..
T Consensus       116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~  174 (467)
T COG2211         116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK  174 (467)
T ss_pred             HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334477889999888888888888875  699999999999999887777666655553

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=90.39  E-value=0.23  Score=35.56  Aligned_cols=61  Identities=13%  Similarity=0.336  Sum_probs=47.9

Q ss_pred             HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++.|+..+.++|...++..+-.|++-....++.. -..+|..+.|++.+++.+++|-+..+.
T Consensus       332 ~~ig~F~simfPTIfslal~~l~~~ts~~s~~l~-maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         332 FLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLV-MAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             HHHHHHhHHHHHHHHHHHHhccCccccccceeee-eheecchHHHHHHHHHHHhhhhHHHHH
Confidence            5678889999999999999999855544444444 445788888999999999999876543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=90.26  E-value=1.9  Score=30.92  Aligned_cols=59  Identities=15%  Similarity=0.046  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE   63 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~   63 (95)
                      ++...-++.|++.|.....+++.+-+.-. .+.|+.+|.+.....++..++..+++.+.+
T Consensus       303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  303 LFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455578999999999999999999986 599999999999998888888888877654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=89.54  E-value=1.4  Score=32.13  Aligned_cols=59  Identities=12%  Similarity=0.080  Sum_probs=48.8

Q ss_pred             HHHHHHHhhccccchhHHHHHhhhhc---cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271          8 SYGVFVGIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISGSALGSIFLPPFLRYLLESYG   66 (95)
Q Consensus         8 ~~~~l~G~g~g~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g   66 (95)
                      +...+.|+..+..+....++++++.+   ++.|..+|+.+....+..++.+...+.+.+.+|
T Consensus       385 ~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g  446 (477)
T TIGR01301       385 IVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG  446 (477)
T ss_pred             HHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33456788888888999999999998   356999999999999999999988888666555

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11462 putative transporter; Provisional

Probab=89.05  E-value=3.6  Score=29.42  Aligned_cols=56  Identities=7%  Similarity=-0.110  Sum_probs=40.2

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLES   64 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~   64 (95)
                      ..++..++..+...+-.++..+.-+  ++|++.+++...+..+|..+++.+...+.+.
T Consensus       115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~  172 (460)
T PRK11462        115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL  172 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566767766777777777765  6999999999998888877776665544443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=87.85  E-value=2.2  Score=30.50  Aligned_cols=57  Identities=21%  Similarity=0.317  Sum_probs=48.9

Q ss_pred             HHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCh
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYGY   67 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw   67 (95)
                      ++..+.....+.+...++++..|+ .-|+..++..+..++|..++..+...+.+.++.
T Consensus       326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~v  383 (433)
T PF03092_consen  326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGV  383 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            445555566688889999999997 889999999999999999999999999988874

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00889 2A0110 nucleoside transporter

Probab=87.48  E-value=1.9  Score=30.31  Aligned_cols=55  Identities=13%  Similarity=-0.073  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhccccchhHHHHH-----------hhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIV-----------TSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRR   69 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~-----------~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~   69 (95)
                      +...++.|++.+...+...++.           .+.+++  .+..|      .+|..+++.+.+.+.....|+.
T Consensus        96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~--~r~~G------~lG~~ig~~l~g~l~~~~~~~~  161 (418)
T TIGR00889        96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPP--IRVMG------TIGFIAAMWAVSLLDIELSNIQ  161 (418)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCC--eeeeh------hHHHHHHHHHHHHhcccchhHH
Confidence            3444667776665555444432           333443  33343      3567777777776643334553

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PTZ00207 hypothetical protein; Provisional

Probab=87.30  E-value=2.7  Score=31.57  Aligned_cols=58  Identities=17%  Similarity=0.272  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHH-HHHHHHHHh
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFL-PPFLRYLLE   63 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~-~~~~~~l~~   63 (95)
                      +|+.+ ++.|++.|..+.....++++.|-|+-|+---+...+..+|+.+. ..+.+.+-+
T Consensus       455 L~~~~-~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd  513 (591)
T PTZ00207        455 LPLPY-FIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYT  513 (591)
T ss_pred             hHHHH-HHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            44444 78999999999999999999999999999998899999998887 445555543

>KOG2615|consensus

Probab=87.24  E-value=1.1  Score=32.24  Aligned_cols=51  Identities=22%  Similarity=0.128  Sum_probs=40.9

Q ss_pred             HHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271         12 FVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL   62 (95)
Q Consensus        12 l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~   62 (95)
                      +--+..+..-++-..++..+-| .+||.++|+..+..+++=.++|.+.+.+.
T Consensus       361 l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  361 LKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             HHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            3444444555666778888888 59999999999999999999999998764

>KOG3098|consensus

Probab=85.69  E-value=1.3  Score=32.19  Aligned_cols=57  Identities=16%  Similarity=-0.005  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRY   60 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~   60 (95)
                      .++...+.+.|+|.+..+.....+++++.+ +++.+..++.......+.+++..+.-.
T Consensus       103 y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  103 YYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             HHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            345556688999999999999999999997 588999999998888888888666544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=85.20  E-value=1  Score=30.34  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=28.2

Q ss_pred             HHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHH
Q psy12271         12 FVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALG   50 (95)
Q Consensus        12 l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g   50 (95)
                      +.+++.|........++.+.+|+++|.++|+......+|
T Consensus       327 ~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       327 ALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            344455555566667778888899999999988876654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=84.99  E-value=4.8  Score=27.28  Aligned_cols=42  Identities=14%  Similarity=0.150  Sum_probs=26.7

Q ss_pred             ccccchhHHHHHhhhhccchHHHHHHHHHh-hHHHHHHHHHHH
Q psy12271         17 AGLSFPPGIFIVTSYFLKYRGLANGIAISG-SALGSIFLPPFL   58 (95)
Q Consensus        17 ~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~-~~~g~~~~~~~~   58 (95)
                      .+.........+.+..|+++|.++++.+.. ..+|..+++.+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        301 VSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555566777788999999987654 345555555543

>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A

Probab=84.70  E-value=1.6  Score=25.87  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=12.1

Q ss_pred             hHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         47 SALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        47 ~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +++|+++..-++.|-.=.+.+|....
T Consensus        71 wavgsF~l~s~~~we~Cr~~r~~~~~   96 (118)
T PF12597_consen   71 WAVGSFFLGSLGSWEYCRYNRRKERQ   96 (118)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555443344444433

Proteins in this family are typically between 112 and 199 amino acids in length.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=84.19  E-value=3.5  Score=29.46  Aligned_cols=66  Identities=15%  Similarity=0.091  Sum_probs=52.2

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhc---cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...-++..+|......++-.++.+.-+   +.||...+.......+|.+++..+.+.+.+..+.|+.|.
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~  158 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFL  158 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEeh
Confidence            334456667777777777777777764   357888889999999999999999999999999887775

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1237|consensus

Probab=83.46  E-value=5.9  Score=29.67  Aligned_cols=61  Identities=15%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESY   65 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~   65 (95)
                      ..+-..++.|++.....+...-.--+-+|+ -|+.+++++....++|..+...+.......-
T Consensus       460 W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t  521 (571)
T KOG1237|consen  460 WQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST  521 (571)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344566889999998888888888888885 9999999999999999999999997765443

>KOG4686|consensus

Probab=83.45  E-value=1.2  Score=31.27  Aligned_cols=56  Identities=25%  Similarity=0.285  Sum_probs=44.8

Q ss_pred             HHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSALGSIFLPPFLRYLLESYG   66 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g   66 (95)
                      .+.|+..++...+--..++...|+ +.|++.|...+...+|-.+.+++.+.+.++-|
T Consensus       360 ~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  360 TFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            456766665555555667788885 99999999999999999999999999987544

>KOG2816|consensus

Probab=82.56  E-value=4.5  Score=29.44  Aligned_cols=48  Identities=19%  Similarity=0.246  Sum_probs=41.3

Q ss_pred             hccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271         16 GAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE   63 (95)
Q Consensus        16 g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~   63 (95)
                      ..+...|+.-++++.+.. +++|++.++....-.+++++.|++.+.+..
T Consensus       343 ~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  343 LAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             hhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            446678888889999986 699999999999999999999999887743

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=81.68  E-value=3.9  Score=30.83  Aligned_cols=56  Identities=21%  Similarity=0.285  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy12271          7 FSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL   62 (95)
Q Consensus         7 ~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~   62 (95)
                      +.+.++.|+|.|....+...++.-..| ++-|+++|+..+.-.+|..++..+...+.
T Consensus       409 i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  409 IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456678888888776666666655667 58899999999988888877777665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10429 melibiose:sodium symporter; Provisional

Probab=81.48  E-value=8.9  Score=27.42  Aligned_cols=51  Identities=14%  Similarity=-0.007  Sum_probs=35.2

Q ss_pred             HHHHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHH
Q psy12271          9 YGVFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLR   59 (95)
Q Consensus         9 ~~~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~   59 (95)
                      ..++.+++..+..++..+++++.-+  ++|.+..++......+|..+.+.+..
T Consensus       112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~  164 (473)
T PRK10429        112 TYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL  164 (473)
T ss_pred             HHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566777777778888888873  69999999866666666555544433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=80.98  E-value=3.9  Score=29.42  Aligned_cols=58  Identities=21%  Similarity=0.205  Sum_probs=37.7

Q ss_pred             HhhccccchhHHHHHhhhhc---cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         14 GIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        14 G~g~g~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      |+..+..+.+...+...+-.   ++.+.--|=.=+..++|.++++.+.|.+.+ .+-+..|+
T Consensus       111 ~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fw  171 (412)
T PF01306_consen  111 GIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFW  171 (412)
T ss_dssp             TTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHH
Confidence            45556666666666665553   455666677777788888888888888876 33344444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=80.35  E-value=12  Score=27.41  Aligned_cols=62  Identities=11%  Similarity=0.034  Sum_probs=47.0

Q ss_pred             HHHHhhccccchhHHHHHhhhhc--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFL--KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++.|+........--..+.+.+|  .+|+..+|-+....++.+++...+.+.+.+.+||.....
T Consensus       274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~  337 (472)
T TIGR00769       274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAAL  337 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34555555555555566777777  488999999999888888888888899999999996443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.08
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.07
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.95
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.87
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.8
2xut_A	524	Proton/peptide symporter family protein; transport	98.61
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.21
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.59
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.56
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.48
2xut_A	524	Proton/peptide symporter family protein; transport	97.44
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.33
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	96.01
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.46

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.08  E-value=1.3e-10  Score=78.87  Aligned_cols=70  Identities=14%  Similarity=0.179  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~   72 (95)
                      +..++..+++.|++.+...++...++.+++| ++|++++++...+..+|..+++++.+++.+.+| ||+.|+
T Consensus       119 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~  190 (451)
T 1pw4_A          119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY  190 (451)
T ss_dssp             SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred             HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3456667899999999999999999999998 699999999999999999999999999999999 998876

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.07  E-value=2.1e-10  Score=77.66  Aligned_cols=65  Identities=14%  Similarity=0.031  Sum_probs=58.1

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHH-hhcC
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLL-ESYG   66 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~-~~~g   66 (95)
                      ++..++..+++.|++.+...++...++++++| ++|++++++...+..+|..+++++.+.+. ...+
T Consensus       116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34566777899999999999999999999998 69999999999999999999999999998 5554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.95  E-value=2e-09  Score=74.11  Aligned_cols=71  Identities=21%  Similarity=0.272  Sum_probs=63.6

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cc--hHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KY--RGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~--rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +...++..+++.|++.+...++...++++++| ++  |+.+.++...+..+|..+++++.+.+.+.+|||+.|+
T Consensus       107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~  180 (491)
T 4aps_A          107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS  180 (491)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            34556677899999999999999999999998 46  8889999999999999999999999999999999887

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.87  E-value=6.3e-10  Score=74.28  Aligned_cols=70  Identities=13%  Similarity=0.114  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...++..+++.|++.+...+....++.+++| ++|++++++...+..+|..+++++.+++.+.+|||+.|.
T Consensus        88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  158 (375)
T 2gfp_A           88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL  158 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHH
Confidence            3456667899999999999999999999998 699999999999999999999999999999899999887

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.80  E-value=3.3e-08  Score=67.96  Aligned_cols=63  Identities=16%  Similarity=0.155  Sum_probs=55.5

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLES   64 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~   64 (95)
                      ++..++..|+++|+|.|..++.+..+++++.| ++|++..++...+..+|..+++.+...+...
T Consensus       125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~  188 (491)
T 4gc0_A          125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS  188 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence            34567788999999999999999999999998 6999999999999999999988888777654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.61  E-value=9.2e-08  Score=66.37  Aligned_cols=71  Identities=18%  Similarity=0.160  Sum_probs=61.8

Q ss_pred             chhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHH---HHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          2 SSHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGI---AISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         2 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi---~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +...++..+++.|++.+...++...++++++| ++|+++.++   ...+..+|..+++++.+.+.+.+|||+.|.
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~  182 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFG  182 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            34456667789999999999999999999998 588777666   899999999999999999999999999887

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.21  E-value=4.9e-06  Score=56.28  Aligned_cols=68  Identities=15%  Similarity=0.065  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhcc-chHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFLK-YRGLANGIAISGSAL-GSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~~-~rg~a~gi~~~~~~~-g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      .++...++.|++.+...+....++.+.+|+ +|++++|+......+ |..+++.+.+.+.+.+||+..|.
T Consensus       348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  417 (451)
T 1pw4_A          348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM  417 (451)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHH
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            344455667777777778888899999984 899999999999999 99999999999999999998876

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.59  E-value=4.4e-05  Score=51.87  Aligned_cols=62  Identities=15%  Similarity=0.124  Sum_probs=49.7

Q ss_pred             HHHHhhccccchhHHHHHhhhhc-cchHHHHHHH-HHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIA-ISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~-~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++.+++.+...+....++++.+| +.||++.++. +....+|..++|.+.+++.+.+|++..|.
T Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~  383 (417)
T 2cfq_A          320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL  383 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHH
Confidence            44555555455566778999998 5899999994 78888999999999999999888887775

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.56  E-value=3e-05  Score=51.49  Aligned_cols=67  Identities=18%  Similarity=0.088  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ++...++.|++.+...+....++.+.+|++||++.|+.+....+|..+++.+.+.+.+..+++..+.
T Consensus       294 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  360 (375)
T 2gfp_A          294 LLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLL  360 (375)
T ss_dssp             HHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence            3345567888888889999999999999999999999999999999999999999988777877665

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.48  E-value=0.0001  Score=50.54  Aligned_cols=67  Identities=13%  Similarity=0.088  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ..+...++.|++.+...+....++.+.+| ++|++++|+......+|..+++.+.+.+.+ .+..+.|.
T Consensus       388 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~  455 (491)
T 4aps_A          388 WLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFS  455 (491)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            34445577888988888999999999998 589999999999999999999999887754 35554444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.44  E-value=0.00012  Score=50.69  Aligned_cols=58  Identities=10%  Similarity=0.020  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy12271          6 AFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLE   63 (95)
Q Consensus         6 ~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~   63 (95)
                      .+...++.|++.+...+....++.+.+| ++||+++|+.+....+|..+++.+.+.+.+
T Consensus       408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4445678888888888999999999998 599999999999999999999999998875

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.33  E-value=0.00077  Score=45.31  Aligned_cols=61  Identities=7%  Similarity=0.145  Sum_probs=53.2

Q ss_pred             HHHHhhccccchhHHHHHhhhhccchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-hHHhhH
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYFLKYRGLANGIAISGSALGSIFLPPFLRYLLESYG-YRRDTE   72 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f~~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~   72 (95)
                      ++.|++.+..++....+..+.+|++++.+.++.. ...+|..++|++.+++.+..| ++..|.
T Consensus       355 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~  416 (438)
T 3o7q_A          355 TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAEL  416 (438)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            6778888888899989989999877999999888 455999999999999999999 988776

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=96.01  E-value=0.046  Score=37.24  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=33.4

Q ss_pred             chhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy12271         21 FPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYL   61 (95)
Q Consensus        21 ~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l   61 (95)
                      .+....+.++.|| +.|++++|+......++.++.+.+.+.+
T Consensus       388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l  429 (491)
T 4gc0_A          388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM  429 (491)
T ss_dssp             THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556678999999 6999999999988888888877766554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.46  E-value=0.0044  Score=41.96  Aligned_cols=60  Identities=15%  Similarity=0.115  Sum_probs=43.1

Q ss_pred             HHHhhccccchhHHHHHhhhhc---cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271         12 FVGIGAGLSFPPGIFIVTSYFL---KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus        12 l~G~g~g~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +.|++.+..+++....+..+.+   ++|+.+.|....+..+|..++|++.+++.+ .+||+.|+
T Consensus       109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~  171 (417)
T 2cfq_A          109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFW  171 (417)
T ss_dssp             GGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHH
Confidence            3344444444444555666664   356777888888889999999999999887 68998886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (80), Expect = 4e-04
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 1   MSSHFAFSYGVFVGIGAGLSFPPGIFIVTS---YFLKYRGLANGIA-ISGSALGSIFLPP 56
            + +        + IG  +  P  +  + +      K  G A G   + G   GS+    
Sbjct: 339 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398

Query: 57  FLRYLLESYGYR 68
            + Y ++ +G+ 
Sbjct: 399 IVGYTVDFFGWD 410

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.04
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.66
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.19
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	94.53

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1e-10  Score=77.29  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=61.6

Q ss_pred             hhHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-ChHHhhH
Q psy12271          3 SHFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSALGSIFLPPFLRYLLESY-GYRRDTE   72 (95)
Q Consensus         3 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~   72 (95)
                      ...++..+++.|++.+..+++...++++++| ++|++++++...+..+|..+++.+...+.... +||+.|+
T Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~  187 (447)
T d1pw4a_         116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY  187 (447)
T ss_dssp             SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccch
Confidence            3456777899999999999999999999998 58999999999999999999999998877654 7998776

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=7.5e-08  Score=61.67  Aligned_cols=69  Identities=13%  Similarity=0.070  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHH-HHhhHHHHHHHHHHHHHHHhhcChHHhhH
Q psy12271          4 HFAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIA-ISGSALGSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         4 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~-~~~~~~g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      ...+...++.|++.+...+....++.+.+| ++|+++.++. +....+|..+++++.+++.+.+|++..|.
T Consensus       313 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~  383 (417)
T d1pv7a_         313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL  383 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence            344555678899989899999999999998 5899999986 56778999999999999999999999886

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=3.2e-06  Score=55.15  Aligned_cols=68  Identities=15%  Similarity=0.065  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhhccccchhHHHHHhhhhc-cchHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcChHHhhH
Q psy12271          5 FAFSYGVFVGIGAGLSFPPGIFIVTSYFL-KYRGLANGIAISGSAL-GSIFLPPFLRYLLESYGYRRDTE   72 (95)
Q Consensus         5 ~~~~~~~l~G~g~g~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~~-g~~~~~~~~~~l~~~~gw~~~~~   72 (95)
                      +.+...++.|++.+...+....++.+.+| ++||+++|+.+....+ |.++++++.+++.+.+||+..|.
T Consensus       345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~  414 (447)
T d1pw4a_         345 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM  414 (447)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            34444566777777777778888999998 5899999999877666 56778889999999999998776

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.022  Score=35.30  Aligned_cols=60  Identities=15%  Similarity=0.154  Sum_probs=36.7

Q ss_pred             HHHHhhccccchhHHHHHhhhh-c--cchHHHHHHHHHhhHHHHHHHHHHHHHHHhhcChHHhh
Q psy12271         11 VFVGIGAGLSFPPGIFIVTSYF-L--KYRGLANGIAISGSALGSIFLPPFLRYLLESYGYRRDT   71 (95)
Q Consensus        11 ~l~G~g~g~~~~~~~~~~~~~f-~--~~rg~a~gi~~~~~~~g~~~~~~~~~~l~~~~gw~~~~   71 (95)
                      ++.+.+.+....+......... +  +++....+........+..+++.+.+.+.+. +|+..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~  170 (417)
T d1pv7a_         108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVF  170 (417)
T ss_dssp             HHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHH
T ss_pred             HHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccc
Confidence            3444444444444444444443 2  2556677777888888888888888888764 444443