Psyllid ID: psy12278

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
MLVKDMNKGVDSNPNHTVGIVGSKKHGPGNGLNNISPSSSSNSSNSAGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFADNGNLGINVTIGTV
ccEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEcccccEEcccccccccccccccccccccccHHHHHHHccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccEEEEEEccccccccccEEEcccccEEEEEEEEHHHccccccEEEEEEEEEcccccccccEEEEEEEEcccEEEEEEEccEEEcccccccccccEEEEEHHHHHHccccccEEEEEEEEEc
ccccccccccccccccEEccccccccccccccccccccccccccccccccHHHHHHcccccccccccccEEEcccccEEEccccccccccccccccccHHHHHHHHHHHHHccccccccccccccEEccccccHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccccEEEEEccccccccccEEEEEccccccEEEEEEEEcccccccEEEEEEEEcccHHHHccEEEEEEEcccccEEEEEcccccHHHHHHHHcccccEEEEcHHHHHHHHcccccEEEEEEEEc
mlvkdmnkgvdsnpnhtvgivgskkhgpgnglnnispssssnssnsagtstdlaslfecpvcfdyvlppiiqcqsghlvcsncrpklsccptcrgplgnirnLAMEKVagtmwfpcryqmngcgisllhtekpehedtcehrpylcpcpgasckwggALDQVMAHLNQSHKsittlqgedIVFLATDINLPGAVDWVMMQSCFGHHFMLVLekqekfdghQHFFAIVQLIgsrkqsenFTYRLELNGhrrrltweatprsiHEGVAsaimnsdclvFDTNIAQLFadngnlginvtigtv
mlvkdmnkgvdsnpnhTVGIVGSKKHGPGNGLNNISPSSSSNSSNSAGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQligsrkqseNFTYRLelnghrrrltweatPRSIHEGVASAIMNSDCLVFDTNIAQLfadngnlginvtigtv
MLVKDMNKGVDSNPNHTVGIVGSKKHGPGNGLnnispssssnssnsAGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFADNGNLGINVTIGTV
****************************************************LASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFADNGNLGINVTI***
*****************************************************ASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFADNGNLGINVTIGTV
**********DSNPNHTVGIVGSKKHGPGNGLNNI***************TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEK********HRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFADNGNLGINVTIGTV
**************************************************TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFADNGNLGINVTIGTV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLVKDMNKGVDSNPNHTVGIVGSKKHGPGNGLNNISPSSSSNSSNSAGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFADNGNLGINVTIGTV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query300 2.2.26 [Sep-21-2011]
Q7ZVG6282 E3 ubiquitin-protein liga yes N/A 0.896 0.953 0.776 1e-128
Q920M9282 E3 ubiquitin-protein liga yes N/A 0.896 0.953 0.776 1e-128
P61092282 E3 ubiquitin-protein liga yes N/A 0.896 0.953 0.776 1e-128
Q8IUQ4282 E3 ubiquitin-protein liga yes N/A 0.896 0.953 0.772 1e-128
Q06985282 E3 ubiquitin-protein liga yes N/A 0.9 0.957 0.766 1e-128
Q8I147331 E3 ubiquitin-protein liga N/A N/A 0.846 0.767 0.830 1e-125
P21461314 E3 ubiquitin-protein liga yes N/A 0.846 0.808 0.830 1e-125
P61093314 E3 ubiquitin-protein liga N/A N/A 0.846 0.808 0.830 1e-125
P29304314 E3 ubiquitin-protein liga N/A N/A 0.846 0.808 0.826 1e-124
Q7SYL3331 E3 ubiquitin-protein liga no N/A 0.836 0.758 0.805 1e-122
>sp|Q7ZVG6|SIAH1_DANRE E3 ubiquitin-protein ligase Siah1 OS=Danio rerio GN=siah1 PE=2 SV=2 Back     alignment and function desciption
 Score =  459 bits (1180), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/277 (77%), Positives = 240/277 (86%), Gaps = 8/277 (2%)

Query: 21  VGSKKHGPGNGLNNISPSSSSNSSNSAGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVC 80
            G+ K  P   +  +S +++SNS        DLASLFECPVCFDYVLPPI+QCQSGHLVC
Sbjct: 11  TGTSKCPPSQRVPTLSGTTASNS--------DLASLFECPVCFDYVLPPILQCQSGHLVC 62

Query: 81  SNCRPKLSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCE 140
           SNCRPKL+CCPTCRGPLG+IRNLAMEKVA ++ FPC+Y  +GC ++L HT+K EHE+ CE
Sbjct: 63  SNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEVTLPHTDKAEHEELCE 122

Query: 141 HRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATDINLPGAVDWVMMQ 200
            RPY CPCPGASCKW G+LD VM HL   HKSITTLQGEDIVFLATDINLPGAVDWVMMQ
Sbjct: 123 FRPYSCPCPGASCKWQGSLDAVMPHLLHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQ 182

Query: 201 SCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRS 260
           SCFG HFMLVLEKQEK+DGHQ FFAIVQLIG+RKQ+ENF YRLELNGHRRRLTWEATPRS
Sbjct: 183 SCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRS 242

Query: 261 IHEGVASAIMNSDCLVFDTNIAQLFADNGNLGINVTI 297
           IHEG+A+AIMNSDCLVFDT+IAQLFA+NGNLGINVTI
Sbjct: 243 IHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTI 279
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. It probably triggers the ubiquitin-mediated degradation of different substrates.
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q920M9|SIAH1_RAT E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1 PE=1 SV=2 Back     alignment and function description
>sp|P61092|SIA1A_MOUSE E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1 SV=1 Back     alignment and function description
>sp|Q8IUQ4|SIAH1_HUMAN E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2 Back     alignment and function description
>sp|Q06985|SIA1B_MOUSE E3 ubiquitin-protein ligase SIAH1B OS=Mus musculus GN=Siah1b PE=2 SV=2 Back     alignment and function description
>sp|Q8I147|SINA_DROWI E3 ubiquitin-protein ligase sina OS=Drosophila willistoni GN=sina PE=3 SV=1 Back     alignment and function description
>sp|P21461|SINA_DROME E3 ubiquitin-protein ligase sina OS=Drosophila melanogaster GN=sina PE=1 SV=2 Back     alignment and function description
>sp|P61093|SINA_DROER E3 ubiquitin-protein ligase sina OS=Drosophila erecta GN=sina PE=3 SV=1 Back     alignment and function description
>sp|P29304|SINA_DROVI E3 ubiquitin-protein ligase sina OS=Drosophila virilis GN=sina PE=3 SV=1 Back     alignment and function description
>sp|Q7SYL3|SIAH2_DANRE E3 ubiquitin-protein ligase Siah2 OS=Danio rerio GN=siah2l PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
307173017279 E3 ubiquitin-protein ligase SIAH1 [Campo 0.866 0.931 0.838 1e-132
66503909279 PREDICTED: e3 ubiquitin-protein ligase S 0.866 0.931 0.846 1e-132
322783276279 hypothetical protein SINV_09755 [Solenop 0.866 0.931 0.838 1e-132
156548702278 PREDICTED: E3 ubiquitin-protein ligase S 0.876 0.946 0.828 1e-131
332016238279 E3 ubiquitin-protein ligase SIAH1 [Acrom 0.82 0.881 0.869 1e-128
260829225272 hypothetical protein BRAFLDRAFT_129882 [ 0.89 0.981 0.809 1e-128
307206490280 E3 ubiquitin-protein ligase SIAH1 [Harpe 0.823 0.882 0.862 1e-128
151554393352 Unknown (protein for IMAGE:8095756) [Bos 0.896 0.764 0.772 1e-127
296478151 431 TPA: seven in absentia 1A-like [Bos taur 0.896 0.624 0.772 1e-127
348541289286 PREDICTED: E3 ubiquitin-protein ligase S 0.9 0.944 0.773 1e-127
>gi|307173017|gb|EFN64159.1| E3 ubiquitin-protein ligase SIAH1 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 218/260 (83%), Positives = 241/260 (92%)

Query: 38  SSSSNSSNSAGTSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPL 97
           S+S+++ ++  +STDLASLFECPVCFDYVLPPI+QCQSGHLVC+NCRPKLSCCPTCRGPL
Sbjct: 17  STSASTVSALSSSTDLASLFECPVCFDYVLPPILQCQSGHLVCTNCRPKLSCCPTCRGPL 76

Query: 98  GNIRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGG 157
           GNIRNLAMEKVA  + FPC+Y  +GC +SL+HTEK +HED CE RPY CPCPGASCKW G
Sbjct: 77  GNIRNLAMEKVASNVMFPCKYSTSGCTVSLVHTEKADHEDACEFRPYSCPCPGASCKWQG 136

Query: 158 ALDQVMAHLNQSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKF 217
           +L+QVM+HL  SHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEK+
Sbjct: 137 SLEQVMSHLMMSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKY 196

Query: 218 DGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVF 277
           DGHQ FFAIVQLIGSRKQ+ENF YRLELNGHRRRLTWEA PRSIHEGV+SAI+NSDCLVF
Sbjct: 197 DGHQQFFAIVQLIGSRKQAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAILNSDCLVF 256

Query: 278 DTNIAQLFADNGNLGINVTI 297
           DT+IAQLFADNGNLGINVTI
Sbjct: 257 DTSIAQLFADNGNLGINVTI 276

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|66503909|ref|XP_394284.2| PREDICTED: e3 ubiquitin-protein ligase Siah1 [Apis mellifera] gi|380026395|ref|XP_003696937.1| PREDICTED: E3 ubiquitin-protein ligase Siah1-like [Apis florea] Back     alignment and taxonomy information
>gi|322783276|gb|EFZ10860.1| hypothetical protein SINV_09755 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|156548702|ref|XP_001602899.1| PREDICTED: E3 ubiquitin-protein ligase SIAH1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332016238|gb|EGI57151.1| E3 ubiquitin-protein ligase SIAH1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|260829225|ref|XP_002609562.1| hypothetical protein BRAFLDRAFT_129882 [Branchiostoma floridae] gi|229294924|gb|EEN65572.1| hypothetical protein BRAFLDRAFT_129882 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|307206490|gb|EFN84516.1| E3 ubiquitin-protein ligase SIAH1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|151554393|gb|AAI49765.1| Unknown (protein for IMAGE:8095756) [Bos taurus] Back     alignment and taxonomy information
>gi|296478151|tpg|DAA20266.1| TPA: seven in absentia 1A-like [Bos taurus] Back     alignment and taxonomy information
>gi|348541289|ref|XP_003458119.1| PREDICTED: E3 ubiquitin-protein ligase Siah1-like [Oreochromis niloticus] gi|432862339|ref|XP_004069806.1| PREDICTED: E3 ubiquitin-protein ligase Siah1-like [Oryzias latipes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query300
MGI|MGI:108064282 Siah1a "seven in absentia 1A" 0.83 0.882 0.843 2.9e-119
RGD|620449282 Siah1a "seven in absentia 1A" 0.83 0.882 0.843 2.9e-119
UNIPROTKB|Q920M9282 Siah1 "E3 ubiquitin-protein li 0.83 0.882 0.843 2.9e-119
UNIPROTKB|F1P2G0282 SIAH1 "Uncharacterized protein 0.83 0.882 0.839 6e-119
UNIPROTKB|F1N5G3313 SIAH1 "Uncharacterized protein 0.83 0.795 0.839 6e-119
UNIPROTKB|F1PEG8308 SIAH1 "Uncharacterized protein 0.83 0.808 0.839 6e-119
UNIPROTKB|Q8IUQ4282 SIAH1 "E3 ubiquitin-protein li 0.83 0.882 0.839 6e-119
ZFIN|ZDB-GENE-010319-31282 siah1 "seven in absentia homol 0.83 0.882 0.835 7.7e-119
MGI|MGI:108063282 Siah1b "seven in absentia 1B" 0.83 0.882 0.835 1.6e-118
FB|FBgn0003410314 sina "seven in absentia" [Dros 0.973 0.929 0.739 6.9e-118
MGI|MGI:108064 Siah1a "seven in absentia 1A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
 Identities = 210/249 (84%), Positives = 229/249 (91%)

Query:    49 TSTDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPKLSCCPTCRGPLGNIRNLAMEKV 108
             ++ DLASLFECPVCFDYVLPPI+QCQSGHLVCSNCRPKL+CCPTCRGPLG+IRNLAMEKV
Sbjct:    31 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKV 90

Query:   109 AGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQ 168
             A ++ FPC+Y  +GC I+L HTEK EHE+ CE RPY CPCPGASCKW G+LD VM HL  
Sbjct:    91 ANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMH 150

Query:   169 SHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQ 228
              HKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFG HFMLVLEKQEK+DGHQ FFAIVQ
Sbjct:   151 QHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ 210

Query:   229 LIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFADN 288
             LIG+RKQ+ENF YRLELNGHRRRLTWEATPRSIHEG+A+AIMNSDCLVFDT+IAQLFA+N
Sbjct:   211 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAEN 270

Query:   289 GNLGINVTI 297
             GNLGINVTI
Sbjct:   271 GNLGINVTI 279
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=ISO
GO:0005737 "cytoplasm" evidence=IEA
GO:0005769 "early endosome" evidence=ISO
GO:0005829 "cytosol" evidence=ISO
GO:0005886 "plasma membrane" evidence=ISO
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0006915 "apoptotic process" evidence=IEA
GO:0007049 "cell cycle" evidence=IEA
GO:0007141 "male meiosis I" evidence=IMP
GO:0007275 "multicellular organismal development" evidence=IEA
GO:0007283 "spermatogenesis" evidence=IMP
GO:0008022 "protein C-terminus binding" evidence=ISO
GO:0008270 "zinc ion binding" evidence=ISO;IDA
GO:0009791 "post-embryonic development" evidence=IMP
GO:0016567 "protein ubiquitination" evidence=TAS
GO:0016874 "ligase activity" evidence=IEA
GO:0030154 "cell differentiation" evidence=IEA
GO:0030163 "protein catabolic process" evidence=ISO
GO:0030877 "beta-catenin destruction complex" evidence=ISO
GO:0031648 "protein destabilization" evidence=ISO
GO:0040014 "regulation of multicellular organism growth" evidence=IMP
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;IDA
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0043065 "positive regulation of apoptotic process" evidence=ISO
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA
GO:0046872 "metal ion binding" evidence=IEA
GO:0051402 "neuron apoptotic process" evidence=ISO
GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=ISO
RGD|620449 Siah1a "seven in absentia 1A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q920M9 Siah1 "E3 ubiquitin-protein ligase SIAH1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2G0 SIAH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5G3 SIAH1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEG8 SIAH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IUQ4 SIAH1 "E3 ubiquitin-protein ligase SIAH1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010319-31 siah1 "seven in absentia homolog 1 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:108063 Siah1b "seven in absentia 1B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0003410 sina "seven in absentia" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q920M9SIAH1_RAT6, ., 3, ., 2, ., -0.77610.89660.9539yesN/A
Q965X6SIAH1_CAEEL6, ., 3, ., 2, ., -0.68230.840.6014yesN/A
Q86MW9SINA_SCHMA6, ., 3, ., 2, ., -0.71910.870.7035N/AN/A
Q06986SIAH2_MOUSE6, ., 3, ., 2, ., -0.81120.82660.7630noN/A
Q06985SIA1B_MOUSE6, ., 3, ., 2, ., -0.76610.90.9574yesN/A
P21461SINA_DROME6, ., 3, ., 2, ., -0.83070.84660.8089yesN/A
Q9I8X5SIAH2_XENLA6, ., 3, ., 2, ., -0.80320.82660.7923N/AN/A
Q7ZVG6SIAH1_DANRE6, ., 3, ., 2, ., -0.77610.89660.9539yesN/A
O43255SIAH2_HUMAN6, ., 3, ., 2, ., -0.81120.82660.7654noN/A
Q9M2P4SINA2_ARATH6, ., 3, ., 2, ., -0.34700.860.8376yesN/A
P61092SIA1A_MOUSE6, ., 3, ., 2, ., -0.77610.89660.9539yesN/A
P61093SINA_DROER6, ., 3, ., 2, ., -0.83070.84660.8089N/AN/A
Q8R4T2SIAH2_RAT6, ., 3, ., 2, ., -0.81120.82660.7630noN/A
Q8I147SINA_DROWI6, ., 3, ., 2, ., -0.83070.84660.7673N/AN/A
Q8IUQ4SIAH1_HUMAN6, ., 3, ., 2, ., -0.77250.89660.9539yesN/A
Q7SYL3SIAH2_DANRE6, ., 3, ., 2, ., -0.80550.83660.7583noN/A
P29304SINA_DROVI6, ., 3, ., 2, ., -0.82670.84660.8089N/AN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
pfam03145198 pfam03145, Sina, Seven in absentia protein family 8e-92
cd03829127 cd03829, Sina, Seven in absentia (Sina) protein fa 6e-84
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 4e-06
>gnl|CDD|190542 pfam03145, Sina, Seven in absentia protein family Back     alignment and domain information 
 Score =  270 bits (692), Expect = 8e-92
 Identities = 107/199 (53%), Positives = 133/199 (66%), Gaps = 3/199 (1%)

Query: 100 IRNLAMEKVAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGAL 159
           IRNLA+EKVA  + FPC++   GC + L    K  HE+ CE++PY CP PGA CKW G  
Sbjct: 1   IRNLAVEKVASKVLFPCKHAALGCPVRLPLQLKDWHEERCEYKPYFCPMPGAKCKWQGDE 60

Query: 160 DQVMAHLNQSHKSITTLQGE-DIVFLATDINLPGAVDWVMMQ-SCFGHHFMLVLEKQEKF 217
           D +M HL   HK ITT  GE DIV+LA  +NL GA  WVM+Q SCFG HF L LEK +  
Sbjct: 61  DDLMPHLTADHKVITTEGGEFDIVYLAAAVNLVGAPTWVMVQFSCFGRHFNLYLEKYDL- 119

Query: 218 DGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVF 277
            G Q +FA++QLIG RK++ENF Y LEL G+RR+LTW+A PRSI +    AI   DCL+F
Sbjct: 120 GGTQMYFAVIQLIGERKEAENFAYELELGGNRRKLTWQAFPRSIRDDHKFAIDGRDCLIF 179

Query: 278 DTNIAQLFADNGNLGINVT 296
             N A+ FA++ NL   VT
Sbjct: 180 LRNAARFFAEDKNLHYRVT 198

The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non- neuronal cell type. The Sina protein contains an N-terminal RING finger domain pfam00097. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that thus Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is described in pfam00097, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana. Length = 198
>gnl|CDD|239753 cd03829, Sina, Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 300
KOG3002|consensus299 100.0
PF03145198 Sina: Seven in absentia protein family; InterPro: 100.0
cd03829127 Sina Seven in absentia (Sina) protein family, C-te 100.0
KOG0297|consensus 391 99.08
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 98.35
PF0217660 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 98.31
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 98.2
KOG0287|consensus 442 98.18
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.0
smart0050463 Ubox Modified RING finger domain. Modified RING fi 98.0
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 97.95
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 97.95
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 97.9
KOG0320|consensus187 97.87
KOG0823|consensus230 97.82
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 97.76
PF1463444 zf-RING_5: zinc-RING finger domain 97.52
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 97.33
PHA02929238 N1R/p28-like protein; Provisional 97.27
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 97.24
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 97.2
cd0016245 RING RING-finger (Really Interesting New Gene) dom 97.19
PLN03086567 PRLI-interacting factor K; Provisional 97.16
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.03
KOG0317|consensus293 96.94
PLN03086567 PRLI-interacting factor K; Provisional 96.89
KOG0978|consensus698 96.62
KOG0311|consensus381 96.61
KOG2164|consensus513 96.6
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 96.48
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 96.45
KOG2177|consensus 386 96.45
PHA02926242 zinc finger-like protein; Provisional 96.35
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 96.25
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.18
KOG4159|consensus398 95.76
PF0217660 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 95.13
KOG2879|consensus298 94.9
COG5152259 Uncharacterized conserved protein, contains RING a 94.15
KOG1813|consensus313 93.91
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 93.37
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 93.15
KOG4172|consensus62 92.17
COG5222427 Uncharacterized conserved protein, contains RING Z 91.51
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 91.45
KOG4275|consensus350 91.43
COG5175 480 MOT2 Transcriptional repressor [Transcription] 90.89
KOG0824|consensus324 89.72
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 89.29
KOG2660|consensus331 89.26
KOG4739|consensus233 88.3
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 87.96
PF0560554 zf-Di19: Drought induced 19 protein (Di19), zinc-b 87.7
KOG4367|consensus 699 87.01
PF0797551 C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al 86.77
KOG1571|consensus355 86.69
PF1391325 zf-C2HC_2: zinc-finger of a C2HC-type 86.62
PF05290140 Baculo_IE-1: Baculovirus immediate-early protein ( 85.91
KOG4265|consensus349 85.85
KOG0802|consensus543 85.75
PF0719170 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 84.73
PRK04023 1121 DNA polymerase II large subunit; Validated 84.42
KOG2932|consensus389 83.18
PF1390924 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W 81.46
PF04641260 Rtf2: Rtf2 RING-finger 81.21
KOG3002|consensus299 80.99
COG4306160 Uncharacterized protein conserved in bacteria [Fun 80.41
>KOG3002|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.1e-52  Score=379.27  Aligned_cols=248  Identities=44%  Similarity=0.788  Sum_probs=233.1

Q ss_pred             cCCCCceeecccccCCCCceeeccCCcccCccccCC-CCCCCCCCCCCCcccchHHHhhhccccccCCCCCCCceeEecc
Q psy12278         51 TDLASLFECPVCFDYVLPPIIQCQSGHLVCSNCRPK-LSCCPTCRGPLGNIRNLAMEKVAGTMWFPCRYQMNGCGISLLH  129 (300)
Q Consensus        51 ~~l~~~l~CpiC~~~~~~Pi~qC~~GH~~C~~C~~~-~~~Cp~Cr~~~~~~rn~~lEk~~~~l~v~C~~~~~GC~~~~~~  129 (300)
                      ....++|+||||.+.+.+||+||++||++|++|..+ ...||.|+.+++.+|+++||++++++.+||+|+..||++.++|
T Consensus        43 ~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~R~~amEkV~e~~~vpC~~~~~GC~~~~~Y  122 (299)
T KOG3002|consen   43 LLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNIRCRAMEKVAEAVLVPCKNAKLGCTKSFPY  122 (299)
T ss_pred             ccchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccHHHHHHHHHHHhceecccccccCCceeecc
Confidence            345678999999999999999999999999999954 5799999999999999999999999999999999999999999


Q ss_pred             CChHHHHHhCCCCCccCCCCCCCCcccccHHHHHHHhhhccCc-cceecCCceEEeeeecCCCCceeEEEEEe-ecCeeE
Q psy12278        130 TEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKS-ITTLQGEDIVFLATDINLPGAVDWVMMQS-CFGHHF  207 (300)
Q Consensus       130 ~~~~~He~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~H~~-~~~~~g~~~~f~~~~~~l~~~~~~~~~~~-c~g~~F  207 (300)
                      .+...||+.|.|+|+.||.+++.|+|+|.+++++.|++..|+. +.+..+.++++.+.+.++.++.+|++.+. |+|..|
T Consensus       123 ~~~~~HE~~C~f~~~~CP~p~~~C~~~G~~~~l~~H~~~~hk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (299)
T KOG3002|consen  123 GEKSKHEKVCEFRPCSCPVPGAECKYTGSYKDLYAHLNDTHKSDIITLTGFDFVFVATDENLLGAATWTLKTSVCFGREF  202 (299)
T ss_pred             ccccccccccccCCcCCCCCcccCCccCcHHHHHHHHHhhChhhhhhccccceecccCCccccccchhheeeeecCcEEE
Confidence            9999999999999999999999999999999999999999987 66788889999999999999999976655 999999


Q ss_pred             EEEEEEeeecCCceeEEEEEEEecCcCCCCCcEEEEEEeeCCceEEEEecccchhhhhhhhccCCCEeEEechhhhhhcC
Q psy12278        208 MLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFAD  287 (300)
Q Consensus       208 ~l~~~~~~~~~~~~~~~~~V~~iG~~~~a~~F~Y~l~v~~~~r~l~~~~~~~si~e~~~~~~~~~dcl~i~~~~~~~f~~  287 (300)
                      .+++..+...+++++|+++++.+|.+++|++|+|+|++.+++++|+|+++|+|+++.+....++.|||+|+.+++++|..
T Consensus       203 ~~~~~~q~~~~~~~~y~tv~~i~~~~~e~~~fsy~L~~~~~~~klt~~s~~~s~~~kvs~~~p~~dfm~ip~~~~~~~~~  282 (299)
T KOG3002|consen  203 GLLFEVQCFREPHGVYVTVNRIAPSAPEAGEFSYSLALGGSGRKLTWQSPPRSIIQKVSKVRPEDDFMLIPRSLLCLFSL  282 (299)
T ss_pred             eeeeeehhhcCCCceEEEeehhccCCCcccccceeeecCCCCceEeecCCcceeecccceeccCCCceeccHHHhhcccc
Confidence            99999988888888999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CC-ceEEEEEEe
Q psy12278        288 NG-NLGINVTIG  298 (300)
Q Consensus       288 ~~-~L~i~v~I~  298 (300)
                      ++ +|.|+++++
T Consensus       283 ~~~~l~i~~~~~  294 (299)
T KOG3002|consen  283 LKMELKIRVTGR  294 (299)
T ss_pred             cCCceeeccchh
Confidence            88 799999874

>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila Back     alignment and domain information
>cd03829 Sina Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins Back     alignment and domain information
>KOG0297|consensus Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG0287|consensus Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG0320|consensus Back     alignment and domain information
>KOG0823|consensus Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG0317|consensus Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>KOG0978|consensus Back     alignment and domain information
>KOG0311|consensus Back     alignment and domain information
>KOG2164|consensus Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>KOG2177|consensus Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4159|consensus Back     alignment and domain information
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A Back     alignment and domain information
>KOG2879|consensus Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG1813|consensus Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG4172|consensus Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4275|consensus Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>KOG0824|consensus Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG2660|consensus Back     alignment and domain information
>KOG4739|consensus Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins Back     alignment and domain information
>KOG4367|consensus Back     alignment and domain information
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair Back     alignment and domain information
>KOG1571|consensus Back     alignment and domain information
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type Back     alignment and domain information
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 Back     alignment and domain information
>KOG4265|consensus Back     alignment and domain information
>KOG0802|consensus Back     alignment and domain information
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length Back     alignment and domain information
>PRK04023 DNA polymerase II large subunit; Validated Back     alignment and domain information
>KOG2932|consensus Back     alignment and domain information
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG3002|consensus Back     alignment and domain information
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
2a25_A193 Crystal Structure Of Siah1 Sbd Bound To The Peptide 1e-92
2an6_A191 Protein-Peptide Complex Length = 191 3e-92
1k2f_A190 Siah, Seven In Absentia Homolog Length = 190 3e-92
4auq_B62 Structure Of Birc7-Ubch5b-Ub Complex. Length = 62 4e-04
>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide Ekpaavvapittg From Sip Length = 193 Back     alignment and structure 
Iteration: 1

 Score =  336 bits (861), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 156/191 (81%), Positives = 171/191 (89%)
Query: 108 VAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLN 167
           VA ++ FPC+Y  +GC I+L HTEK +HE+ CE RPY CPCPGASCKW G+LD VM HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60
Query: 168 QSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIV 227
             HKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFG HFMLVLEKQEK+DGHQ FFAIV
Sbjct: 61  HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 120
Query: 228 QLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFAD 287
           QLIG+RKQ+ENF YRLELNGHRRRLTWEATPRSIHEG+A+AIMNSDCLVFDT+IAQLFA+
Sbjct: 121 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAE 180
Query: 288 NGNLGINVTIG 298
           NGNLGINVTI 
Sbjct: 181 NGNLGINVTIS 191
>pdb|2AN6|A Chain A, Protein-Peptide Complex Length = 191 Back     alignment and structure
>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog Length = 190 Back     alignment and structure
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex. Length = 62 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query300
2a25_A193 Ubiquitin ligase SIAH1; protein-peptide complex, l 1e-74
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 2e-08
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 6e-07
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 3e-06
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 3e-06
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 4e-06
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 6e-06
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 7e-06
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 1e-05
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 4e-05
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 5e-05
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 5e-05
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 1e-04
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 1e-04
1z6u_A150 NP95-like ring finger protein isoform B; structura 2e-04
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 2e-04
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 4e-04
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 5e-04
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 6e-04
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Length = 193 Back     alignment and structure
 Score =  226 bits (576), Expect = 1e-74
 Identities = 156/190 (82%), Positives = 171/190 (90%)

Query: 108 VAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLN 167
           VA ++ FPC+Y  +GC I+L HTEK +HE+ CE RPY CPCPGASCKW G+LD VM HL 
Sbjct: 1   VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLM 60

Query: 168 QSHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIV 227
             HKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFG HFMLVLEKQEK+DGHQ FFAIV
Sbjct: 61  HQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIV 120

Query: 228 QLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFAD 287
           QLIG+RKQ+ENF YRLELNGHRRRLTWEATPRSIHEG+A+AIMNSDCLVFDT+IAQLFA+
Sbjct: 121 QLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAE 180

Query: 288 NGNLGINVTI 297
           NGNLGINVTI
Sbjct: 181 NGNLGINVTI 190
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
2a25_A193 Ubiquitin ligase SIAH1; protein-peptide complex, l 100.0
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 99.83
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 99.52
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 99.48
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 99.46
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 98.8
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 98.78
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 98.76
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 98.75
2ecw_A85 Tripartite motif-containing protein 30; metal bind 98.69
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 98.63
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.63
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 98.6
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 98.59
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 98.58
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 98.57
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 98.57
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 98.56
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 98.54
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 98.51
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 98.47
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 98.47
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 98.47
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 98.45
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 98.43
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 98.41
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 98.41
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 98.41
2ysj_A63 Tripartite motif-containing protein 31; ring-type 98.4
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 98.39
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 98.38
1z6u_A150 NP95-like ring finger protein isoform B; structura 98.37
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 98.34
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 98.34
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 98.33
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 98.28
2ea5_A68 Cell growth regulator with ring finger domain prot 98.25
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.25
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 98.24
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 98.21
2f42_A179 STIP1 homology and U-box containing protein 1; cha 98.16
2ect_A78 Ring finger protein 126; metal binding protein, st 98.16
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 98.13
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 98.1
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 98.08
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 98.06
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 98.06
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 98.04
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 98.02
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 97.97
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 97.92
2ecm_A55 Ring finger and CHY zinc finger domain- containing 97.84
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 97.83
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 97.82
2yre_A100 F-box only protein 30; zinc binding, E3 ubiquitin 97.74
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 97.74
2yuc_A76 TNF receptor-associated factor 4; ZF-TRAF, cystein 97.63
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 97.6
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 97.57
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 97.51
2yre_A100 F-box only protein 30; zinc binding, E3 ubiquitin 97.5
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 97.49
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 97.43
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 97.39
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 97.28
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 97.18
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 97.16
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 97.04
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 96.64
2yuc_A76 TNF receptor-associated factor 4; ZF-TRAF, cystein 96.63
2d9k_A75 FLN29 gene product; zinc finger, ZF-TRAF, structur 96.6
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 96.36
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 96.08
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 95.91
2jun_A101 Midline-1; B-BOX, TRIM, ring finger, alternative s 92.77
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 91.73
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 91.65
2d9k_A75 FLN29 gene product; zinc finger, ZF-TRAF, structur 91.24
2dlq_A124 GLI-kruppel family member HKR3; ZF-C2H2 domain, st 88.63
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 88.24
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 88.24
2eod_A66 TNF receptor-associated factor 4; zinc binding, NF 88.11
2cs3_A93 Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s 87.82
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 86.42
1z60_A59 TFIIH basal transcription factor complex P44 subun 83.88
2yt9_A95 Zinc finger-containing protein 1; C2H2, structural 80.92
1wfp_A74 Zinc finger (AN1-like) family protein; ZF-AN1 doma 80.2
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Back     alignment and structure
Probab=100.00  E-value=3.9e-49  Score=342.57  Aligned_cols=193  Identities=81%  Similarity=1.368  Sum_probs=141.0

Q ss_pred             hhccccccCCCCCCCceeEeccCChHHHHHhCCCCCccCCCCCCCCcccccHHHHHHHhhhccCccceecCCceEEeeee
Q psy12278        108 VAGTMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATD  187 (300)
Q Consensus       108 ~~~~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~H~~~~~~~g~~~~f~~~~  187 (300)
                      +++++++||+|+.+||++.++|.++..||++|+|+|+.||+++.+|+|+|+.++|..|++..|+++.+.+|++++|++.+
T Consensus         1 v~~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~~H~~~~~~~g~~i~f~~~~   80 (193)
T 2a25_A            1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATD   80 (193)
T ss_dssp             -----------------------------------CEECCCC--CCCCEECSTTHHHHHHHHCTTSCEEESSEEEEEEEC
T ss_pred             CccceEecCCCCCCCCCcccccccccchhhcCCCCCccCCCCCCCCcCCCCHHHHHHHHHHHCCCcceecCceEEEEecc
Confidence            46789999999999999999999999999999999999999988899999999999999999998778999999999999


Q ss_pred             cCCCCceeEEEEEeecCeeEEEEEEEeeecCCceeEEEEEEEecCcCCCCCcEEEEEEeeCCceEEEEecccchhhhhhh
Q psy12278        188 INLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVAS  267 (300)
Q Consensus       188 ~~l~~~~~~~~~~~c~g~~F~l~~~~~~~~~~~~~~~~~V~~iG~~~~a~~F~Y~l~v~~~~r~l~~~~~~~si~e~~~~  267 (300)
                      ++++++++|+++|+|+|++|+|++++++...|+++++|+|++|||+++|++|+|+|++.+++|+|+|+++|+|++|++++
T Consensus        81 ~~l~~~~~~~~v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~~~~  160 (193)
T 2a25_A           81 INLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIAT  160 (193)
T ss_dssp             CC----CEEEEEEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHH
T ss_pred             cccccceeEEEEEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhcccc
Confidence            99999999999999999999999999987777788999999999999999999999999999999999999999999999


Q ss_pred             hccCCCEeEEechhhhhhcCCCceEEEEEEeeC
Q psy12278        268 AIMNSDCLVFDTNIAQLFADNGNLGINVTIGTV  300 (300)
Q Consensus       268 ~~~~~dcl~i~~~~~~~f~~~~~L~i~v~I~~~  300 (300)
                      +++++|||+||++++++|+++|+|+|+|+|+++
T Consensus       161 ~~~~~d~L~ip~~~~~~f~~~~~L~l~v~I~~~  193 (193)
T 2a25_A          161 AIMNSDCLVFDTSIAQLFAENGNLGINVTISMC  193 (193)
T ss_dssp             HHHTTCSEEEEHHHHHHHCSSSEEEEEEEEEEC
T ss_pred             cccCCCEEEEcHHHHHhhcCCCeEEEEEEEEeC
Confidence            999999999999999999999999999999985
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Back     alignment and structure
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3 Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2 Back     alignment and structure
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Back     alignment and structure
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 300
d1k2fa_190 b.8.1.2 (A:) SIAH, seven in absentia homolog {Mous 1e-75
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 7e-05
d1jm7b_97 g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie 2e-04
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 4e-04
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 9e-04
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 0.001
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 0.003
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 Back     information, alignment and structure

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  227 bits (580), Expect = 1e-75
 Identities = 155/184 (84%), Positives = 167/184 (90%)

Query: 114 FPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSI 173
           FPC+Y  +GC I+L HTEK EHE+ CE RPY CPCPGASCKW G+LD VM HL   HKSI
Sbjct: 4   FPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSI 63

Query: 174 TTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSR 233
           TTLQGEDIVFLATDINLPGAVDWVMMQSCFG HFMLVLEKQEK+DGHQ FFAIVQLIG+R
Sbjct: 64  TTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTR 123

Query: 234 KQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIMNSDCLVFDTNIAQLFADNGNLGI 293
           KQ+ENF YRLELNGHRRRLTWEATPRSIHEG+A+AIMNSDCLVFDT+IAQLFA+NGNLGI
Sbjct: 124 KQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGI 183

Query: 294 NVTI 297
           NVTI
Sbjct: 184 NVTI 187
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query300
d1k2fa_190 SIAH, seven in absentia homolog {Mouse (Mus muscul 100.0
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.93
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.76
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.74
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.63
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.58
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.53
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 98.34
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.19
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.19
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.11
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.09
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.05
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 97.88
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 96.93
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 96.71
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 96.22
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 94.3
d1wfpa_74 Zinc finger A20 and AN1 domains containing protein 89.23
d1z60a159 TFIIH p44 subunit cysteine-rich domain {Human (Hom 88.33
d1zfda_32 SWI5 zinc-finger domains {Baker's yeast (Saccharom 85.67
d2jnea171 Hypothetical protein YfgJ {Escherichia coli [TaxId 84.5
d1sp2a_31 Transcription factor sp1 {Human (Homo sapiens) [Ta 82.0
d1ubdc428 Ying-yang 1 (yy1, zinc finger domain) {Human (Homo 80.64
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: SIAH, seven in absentia homolog
domain: SIAH, seven in absentia homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-48  Score=333.65  Aligned_cols=190  Identities=82%  Similarity=1.381  Sum_probs=183.4

Q ss_pred             cccccCCCCCCCceeEeccCChHHHHHhCCCCCccCCCCCCCCcccccHHHHHHHhhhccCccceecCCceEEeeeecCC
Q psy12278        111 TMWFPCRYQMNGCGISLLHTEKPEHEDTCEHRPYLCPCPGASCKWGGALDQVMAHLNQSHKSITTLQGEDIVFLATDINL  190 (300)
Q Consensus       111 ~l~v~C~~~~~GC~~~~~~~~~~~He~~C~f~~~~Cp~~~~~C~~~g~~~~l~~Hl~~~H~~~~~~~g~~~~f~~~~~~l  190 (300)
                      ++.+||+|+..||++++++.++..||++|+|+|+.||+++.+|+|+|..++|..|++..|+++.+.++.++.|++.+.++
T Consensus         1 Sv~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~p~~C~~~~~~C~~~G~~~~l~~Hl~~~H~~~~~~~~~~~~~~~~~~~~   80 (190)
T d1k2fa_           1 SVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINL   80 (190)
T ss_dssp             CCCCCCTTGGGTCCCCCCGGGHHHHHHTCTTSCEECCSSSTTCCCEECHHHHHHHHHHSSCCCEEEESSEEEEEECCTTC
T ss_pred             CeeEecCCCCCCCCEeccccchhhHHhcCCCcccCCCCCCCCCccCCCHhHHHHHHHhcCCcccccCccceEEeeecccc
Confidence            47899999999999999999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             CCceeEEEEEeecCeeEEEEEEEeeecCCceeEEEEEEEecCcCCCCCcEEEEEEeeCCceEEEEecccchhhhhhhhcc
Q psy12278        191 PGAVDWVMMQSCFGHHFMLVLEKQEKFDGHQHFFAIVQLIGSRKQSENFTYRLELNGHRRRLTWEATPRSIHEGVASAIM  270 (300)
Q Consensus       191 ~~~~~~~~~~~c~g~~F~l~~~~~~~~~~~~~~~~~V~~iG~~~~a~~F~Y~l~v~~~~r~l~~~~~~~si~e~~~~~~~  270 (300)
                      +++.+|++++.|+|++|++++++++..++.++++|+|++||++++|++|+|+|++.+++|+|+|++.|+|++|++.++++
T Consensus        81 ~~~~~~v~~~~~~g~~F~l~~~~~~~~~~~~~~~~~v~~~G~~~~a~~f~Yel~l~~~~r~l~~~~~~~si~e~~~~~~~  160 (190)
T d1k2fa_          81 PGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIM  160 (190)
T ss_dssp             TTCCEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHHHHH
T ss_pred             ccceeEEEEEecCCCEEEEEEEEEeccCCCCeEEEEEEEECCHHHhhCccEEEEecCCCceEEEeccccccccccccccC
Confidence            99999999999999999999999888788899999999999999999999999999999999999999999999999999


Q ss_pred             CCCEeEEechhhhhhcCCCceEEEEEEeeC
Q psy12278        271 NSDCLVFDTNIAQLFADNGNLGINVTIGTV  300 (300)
Q Consensus       271 ~~dcl~i~~~~~~~f~~~~~L~i~v~I~~~  300 (300)
                      ++|||+|++++|++|+++|+|+|+|||++|
T Consensus       161 ~~d~lvi~~~~~~~F~~~g~L~l~v~I~~~  190 (190)
T d1k2fa_         161 NSDCLVFDTSIAQLFAENGNLGINVTISMC  190 (190)
T ss_dssp             TTCSEEEEHHHHHHHCBTTBEEEEEEEEEC
T ss_pred             CCCEEEECHHHHhhcccCCcEEEEEEEEeC
Confidence            999999999999999999999999999986
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure