Psyllid ID: psy12281

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLKLCAQHEDWDLKLETNKLIEDLNSSI
Secondary Structure (PSIPRED)
cccccccEEcccccccccccEEEccccccccccccHHHHHccccEEEccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHcccccEEEccccccccccccccccccccHHHHHHHccccEEEEEEccccccccccEEEccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEEEcccccccccEEcccccccEEEEEEEccEEEEEcccccccccccccccccccccccccccccccEEEEEEcccccEEcccccEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEccEEEEEccccccccccEEcccccccccEEEHHHHcccccccccccEEEEEEEcccccHHHccHHHHHHHcccccccccccccEEEcccccccHHHHHHHHcccccEEEEcccccccHHHHccccccccHHHHHHHccccEEEEccccccccccccccEEcHHHHHHHHHHcccccccccccEEEEccccHHHccccccHcccccccHHHHHHHHHHHcHccccccEEEEEccccccccEEccccccccEEEEEEccEEEEEcccccccccccccccccccccccccccccccccEEEEEccccEEEEccccEEEEEEcccEEEEEccccccccHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEHEcHHHHHHHHHHHHccccccccccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msvyhdeieiedfeydeddetyyypcpcgdrfqITKEQLkagedvatcptcsliikpsVIKSVMLMLSdscnsneqinvtttalpqvdynidpshiypycfnnflsknkpfILKSCVNEWNSSLHWVQnkqpnfeylsnhygdievpvancnsyyfnahektnMTLKEYTIYWQnkidgklseteplyylkdwhftrdfktediyrvpnvfssdWLNEYYSEHlehkddyrfvymgpketwtplhadvfhsySWSVNICGRkqwlllapgnekyFKDSMGNLISdmrsvdwstlprdTVIIVEqeagdsifvpsgwhhqvtNLEHTISINhnwingtnidHVYHEMVSHLEAVKKEiddckdmddwTSHCQLMLQVSFGINFRQFFDMLKFICQKRLtslkngttirlygnWILSLDHTMFDLRKASDVLKLCAQHEDWDLKLETNKLIEDLNSSI
Flexible Loop (DISEMBL)
msvyhdeieiedfeydeddETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLKLCAQHedwdlkletnkliedlnssi
Low Complexity Region (SEG)
MSVyhdeieiedfeydeddetyyyPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLKLCAQHEDWDLKLETNKLIEDLNSSI
Disordered region (IsUnstruct)
******EIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLKLCAQHEDWDLKLETNKL********
Disordered Region (DISOPRED)
*SVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNK*******TEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLE**KK*IDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFICQK******************LSLDHTMFDLRKASDVLKLCAQHEDWDLKLETNKLIEDLNSS*
Disordered Region (DISEMBL)
MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLKLCAQHEDWDLKLETNKLIEDLNSSI
Disordered Region (DISPRO)
*SVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLKLCAQHEDWDLKLETNKLIEDLNSSI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLKLCAQHEDWDLKLETNKLIEDLNSSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
Q9H9V9	463	JmjC domain-containing pr	yes	N/A	0.767	0.755	0.409	2e-79
Q5ZHV5	425	JmjC domain-containing pr	yes	N/A	0.771	0.828	0.424	1e-78
Q8BFT6	427	JmjC domain-containing pr	yes	N/A	0.706	0.754	0.446	1e-77
Q08BY5	422	JmjC domain-containing pr	yes	N/A	0.776	0.838	0.397	1e-73
Q9VJ97	425	JmjC domain-containing pr	yes	N/A	0.697	0.748	0.405	4e-69
O13977	464	JmjC domain-containing pr	yes	N/A	0.567	0.558	0.312	2e-32
Q5R7N8	82	DPH3 homolog OS=Pongo abe	no	N/A	0.122	0.682	0.785	8e-21
Q4R312	82	DPH3 homolog OS=Macaca fa	N/A	N/A	0.122	0.682	0.785	8e-21
Q96FX2	82	DPH3 homolog OS=Homo sapi	no	N/A	0.122	0.682	0.785	8e-21
Q6VUC1	82	DPH3 homolog OS=Cricetulu	no	N/A	0.122	0.682	0.785	8e-21

>sp|Q9H9V9|JMJD4_HUMAN JmjC domain-containing protein 4 OS=Homo sapiens GN=JMJD4 PE=2 SV=2

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/371 (40%), Positives = 220/371 (59%), Gaps = 21/371 (5%)

Query: 102 NNFLSKNKPFILKSCVNE-WNSSLHWV-QNKQPNFEYLSNHYGDIEVPVANCNSYYFNAH 159
             FL  N P +  S   + W S   WV    +P+F++L   YGD+ VPVANC    +N++
Sbjct: 92  RGFLLPNLPCVFSSAFTQGWGSRRRWVTPAGRPDFDHLLRTYGDVVVPVANCGVQEYNSN 151

Query: 160 EKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEY 219
            K +MTL++Y  YW+  I    S      YLKDWH  RDF  ED++ +P  FSSDWLNE+
Sbjct: 152 PKEHMTLRDYITYWKEYIQAGYSSPRGCLYLKDWHLCRDFPVEDVFTLPVYFSSDWLNEF 211

Query: 220 YSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSM 279
           + + L+  DDYRFVY GP  +W+P HAD+F S+SWSVN+CGRK+WLL  PG E+  +D  
Sbjct: 212 W-DALD-VDDYRFVYAGPAGSWSPFHADIFRSFSWSVNVCGRKKWLLFPPGQEEALRDRH 269

Query: 280 GNLISDMRS---VDWSTLPRDTV----IIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN 332
           GNL  D+ S    D    PR+ +    + + QEAG+ +FVPSGWHHQV NL+ TISINHN
Sbjct: 270 GNLPYDVTSPALCDTHLHPRNQLAGPPLEITQEAGEMVFVPSGWHHQVHNLDDTISINHN 329

Query: 333 WINGTNIDHVYHEMVSHLEAVKKEIDDCKD-MDDWTSHCQLMLQVSFGINFRQFFDMLKF 391
           W+NG N+ +++  +   L AV++E+ + +D M DW  HCQ++++   GINF +F+  LK 
Sbjct: 330 WVNGFNLANMWRFLQQELCAVQEEVSEWRDSMPDWHHHCQVIMRSCSGINFEEFYHFLKV 389

Query: 392 ICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLKLCAQHEDWD------LKLET 445
           I +KRL  L+        G   L  +   FD+ + ++VL     H D+          + 
Sbjct: 390 IAEKRLLVLREAAAEDGAG---LGFEQAAFDVGRITEVLASLVAHPDFQRVDTSAFSPQP 446

Query: 446 NKLIEDLNSSI 456
            +L++ L  ++
Sbjct: 447 KELLQQLREAV 457

Homo sapiens (taxid: 9606)

>sp|Q5ZHV5|JMJD4_CHICK JmjC domain-containing protein 4 OS=Gallus gallus GN=JMJD4 PE=2 SV=1

 Score =  293 bits (751), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/372 (42%), Positives = 221/372 (59%), Gaps = 20/372 (5%)

Query: 94  SHIYPYCFNNFLSKNKPFIL-KSCVNEWNSSLHWVQ-NKQPNFEYLSNHYGDIEVPVANC 151
           S  Y   F ++L  N+P +  +   + W S  +WV    +P+F++L   +G+  VPVANC
Sbjct: 37  SFTYSDFFRDYLIPNQPCVFSEKFTDGWGSRRNWVTWGGKPDFDHLLQEFGEAIVPVANC 96

Query: 152 NSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVF 211
           +   +N++ K  +  KEY  YW+  I      +    YLKDWH +R F  +D+Y  P  F
Sbjct: 97  DVKEYNSNPKEQLPFKEYISYWKEYIKNGYRSSRGCLYLKDWHLSRAFPEQDVYTTPVYF 156

Query: 212 SSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGN 271
           SSDWLNEY+       DDYRFVYMGPK +WTP HADVF SYSWS NICGRK+WLL  PG 
Sbjct: 157 SSDWLNEYWDAIA--VDDYRFVYMGPKGSWTPFHADVFRSYSWSANICGRKKWLLYPPGQ 214

Query: 272 EKYFKDSMGNLISDMRSV---DWSTLPR----DTVIIVEQEAGDSIFVPSGWHHQVTNLE 324
           E Y KD  GNL  D+ +    D S  PR       + + QEAG+ +F+PSGWHHQV NLE
Sbjct: 215 EDYLKDCHGNLPFDVTAPGLQDRSVYPRYNQSQPPVEIVQEAGEIVFIPSGWHHQVYNLE 274

Query: 325 HTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKD-MDDWTSHCQLMLQVSFGINFR 383
            TISINHNW+NG N+  ++  +   L AV++EI++ KD MDDW   CQL+++   GI+++
Sbjct: 275 DTISINHNWVNGCNVAIMWCFLQDELAAVQREINEWKDPMDDWHLQCQLIMKSCTGIDYK 334

Query: 384 QFFDMLKFICQKRLTSLKNGTTIRLYGN-------WILSLDHTMFDLRKASDVLKLCAQH 436
           +F++ LK I + R++ L+NG                 L + H +FDL++   VL   + +
Sbjct: 335 EFYNFLKVIAENRISILENGLDDEASAKNTPKAAISTLGMLHAVFDLKRTVKVLTSLSAN 394

Query: 437 EDWDLKLETNKL 448
           ED+  KL+   L
Sbjct: 395 EDFK-KLDLTSL 405

Gallus gallus (taxid: 9031)

>sp|Q8BFT6|JMJD4_MOUSE JmjC domain-containing protein 4 OS=Mus musculus GN=Jmjd4 PE=2 SV=1

 Score =  290 bits (743), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 155/347 (44%), Positives = 213/347 (61%), Gaps = 25/347 (7%)

Query: 103 NFLSKNKPFILKSCVNE-WNSSLHWVQNK-QPNFEYLSNHYGDIEVPVANCNSYYFNAHE 160
            FL  N P +  S   E W S   WV ++ +P+FEYL   YGD  VPVANC    +N++ 
Sbjct: 49  GFLLPNLPCVFSSAFTEGWGSRRRWVTSEGKPDFEYLQQKYGDAVVPVANCGVREYNSNP 108

Query: 161 KTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKT---EDIYRVPNVFSSDWLN 217
           K +M+ ++Y  YW++ I G  S +    YLKDWH  RD      EDI+ +P  FSSDWLN
Sbjct: 109 KEHMSFRDYISYWKDYIQGSYSSSRGCLYLKDWHLCRDSLVNDLEDIFTLPVYFSSDWLN 168

Query: 218 EYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKD 277
           E++   + + DDYRFVY GP+ TW+P HAD+F S+SWSVNICG+K+WL   PG E+  +D
Sbjct: 169 EFWD--VLNVDDYRFVYAGPRGTWSPFHADIFRSFSWSVNICGKKKWLFFPPGEEEALRD 226

Query: 278 SMGNLISDMRS---VDWSTLPR----DTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISIN 330
             GNL  D+ S   +D    P+       I V QE G+ +FVPSGWHHQV NL+ TISIN
Sbjct: 227 CHGNLPYDVTSTELLDTHLYPKIQHHSLPIEVIQEPGEMVFVPSGWHHQVYNLDDTISIN 286

Query: 331 HNWINGTNIDHVYHEMVSHLEAVKKEIDDCKD-MDDWTSHCQLMLQVSFGINFRQFFDML 389
           HNW+NG N+ +++H +   L+AV+ E+++ KD M DW  HCQ++++   GINF +F+  L
Sbjct: 287 HNWVNGCNLPNMWHFLQQELQAVQHEVEEWKDSMPDWHHHCQVIMKSCTGINFEEFYHFL 346

Query: 390 KFICQKRLTSLKNGTTIRLYGN------WILSLDHTMFDLRKASDVL 430
           K I +KRL  L+ G    L G+        L L    FD+ + +DVL
Sbjct: 347 KVIAEKRLLVLEQG----LKGDSGDSRSLDLGLQQAAFDIGRLADVL 389

Mus musculus (taxid: 10090)

>sp|Q08BY5|JMJD4_DANRE JmjC domain-containing protein 4 OS=Danio rerio GN=jmjd4 PE=2 SV=1

 Score =  277 bits (708), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/387 (39%), Positives = 222/387 (57%), Gaps = 33/387 (8%)

Query: 97  YPYCFNNFLSKNKPFIL-KSCVNEWNSSLHWVQNK-QPNFEYLSNHYGDIEVPVANCNSY 154
           Y   F N+L  N+P +  K    EWN    WV  + +PN + L + + +  VPVANC+  
Sbjct: 38  YSKFFKNYLIPNQPCMFSKKFTEEWNCRKKWVTAEGKPNLQRLLHEFDETPVPVANCSVK 97

Query: 155 YFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSD 214
            +NA+ K  M  KE+  YW+  I    S  +   YLKDWH  R+F   +IY+ P  FSSD
Sbjct: 98  EYNANPKQIMPFKEFIQYWRESIQNGHSSPKGCLYLKDWHMQRNFPEHNIYKTPIYFSSD 157

Query: 215 WLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKY 274
           WLNEY+       DDYRFVYMGPK +WTP HADVF SYSWS NICGRK+WLL  PG E +
Sbjct: 158 WLNEYWD--TIEVDDYRFVYMGPKGSWTPFHADVFRSYSWSANICGRKKWLLYPPGQEDF 215

Query: 275 FKDSMGNLISDMRS-----------VDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNL 323
            +D  GNL  D+ +            + +  P + +    QEAG+ IFVPSGWHHQV NL
Sbjct: 216 LRDCHGNLAYDVTAPILQDKGLYAQFEEACQPLEII----QEAGEIIFVPSGWHHQVYNL 271

Query: 324 EHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKD-MDDWTSHCQLMLQVSFGINF 382
           E TISINHNW+NG N+D ++  +   L +V++EI++ +D MD W  HCQ++++   GI++
Sbjct: 272 EDTISINHNWLNGCNLDIMWQFLQDELSSVQREIEEWRDTMDTWHQHCQVIMKSCTGIDY 331

Query: 383 RQFFDMLKFICQKRLTSL----KNGTTIR-LYGNWILSLD--HTMFDLRKASDVLKLCAQ 435
            +F   LK I   R++ L    +N  + + L    + +L   H  FDL++   + ++   
Sbjct: 332 AEFASFLKTIANNRISFLNSSPRNADSCQDLLAESLCALGPHHAAFDLQRVLHIFEIMLN 391

Query: 436 HEDWD------LKLETNKLIEDLNSSI 456
           +ED+       L  +   L++++  +I
Sbjct: 392 NEDFKRLDPATLSFKPEDLLQEIREAI 418

Danio rerio (taxid: 7955)

>sp|Q9VJ97|JMJD4_DROME JmjC domain-containing protein 4 homolog OS=Drosophila melanogaster GN=CG7200 PE=2 SV=1

 Score =  262 bits (669), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 143/353 (40%), Positives = 194/353 (54%), Gaps = 35/353 (9%)

Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQP--------------NFEYLSNHYGDIEV 146
           F  ++ KN P I+ +  N+W      V    P              NF+YL     D  V
Sbjct: 42  FWRYMHKNIPVIIANVSNDWECQNWTVGQSSPESRDLNSNPSASSINFDYLKTKISDGPV 101

Query: 147 PVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSET----------EPL----YYLKD 192
           PVANCNS YFN+H K  +   +Y   W++ I+ + S             P      YLKD
Sbjct: 102 PVANCNSSYFNSHTKLELNFHDYLAKWRSSIESQSSAAWTSAEVNSNVAPASGDNLYLKD 161

Query: 193 WHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSY 252
           WH        + Y+VP  F+SDWLNE   +  + KDDYRFVYMGPK +WT  HADVF S+
Sbjct: 162 WHLAAQMPGYNFYKVPKYFASDWLNEQLIQ--QGKDDYRFVYMGPKNSWTSYHADVFGSF 219

Query: 253 SWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTV--IIVEQEAGDSI 310
           SWS NI G K+WL++ PG E    D +GNL     S+D   L    V    + Q A +++
Sbjct: 220 SWSTNIVGLKKWLIMPPGEELKLNDRLGNL---PFSIDEKMLDEHNVRYYTINQRANEAV 276

Query: 311 FVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHC 370
           FVPSGW HQV NL  TIS+NHNW NG NI  V+  + ++L+AV  EI DC+ MD++ +HC
Sbjct: 277 FVPSGWFHQVWNLTDTISVNHNWFNGCNISMVWQNLKNNLKAVCNEISDCQQMDNFEAHC 336

Query: 371 QLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDL 423
           Q ML+ SFGIN+  F ++L+FI  +RL      T   L+ ++ ++  H  +DL
Sbjct: 337 QTMLRASFGINYLDFIELLEFIAARRLAEGTVATKFLLFDSYTMNDYHVQYDL 389

Drosophila melanogaster (taxid: 7227)

>sp|O13977|JMJ1_SCHPO JmjC domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=jmj1 PE=4 SV=1

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 29/288 (10%)

Query: 132 PNFEYLSNHYGDIEVPVANCNSY-YFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPL--- 187
           PN+EYL  +YG I VP+A CN    + +  +  + LK      +++         P    
Sbjct: 119 PNYEYLEENYGTIPVPLAYCNEKDRYGSQRRETVPLKSALHELRDEQVQLQCRQAPSNQA 178

Query: 188 ---YYLKDWHFTRDFKTEDI-YRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTP 243
               Y KD H  R     D  Y  P++F+ DWLN Y  +     DD+RF Y+G   T T 
Sbjct: 179 LKSLYAKDMHLFRHLDPADFPYSTPDIFADDWLNAYVIDC--ESDDFRFAYLGSHLTTTG 236

Query: 244 LHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLP-------- 295
           LH DV+ S+S+SVN+CG K WL + P + +    ++ +L  D +   W T          
Sbjct: 237 LHTDVYASHSFSVNLCGVKCWLFIDPKDLQ----TIASLYDDQQLPSWITKDDLFRGPLV 292

Query: 296 --RDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAV 353
             R  + I+ Q  G ++FVPSGW+HQV N+  T+SINHNW N + I  +Y  +    E  
Sbjct: 293 NHRHLIKILFQYPGQTVFVPSGWYHQVLNIGTTLSINHNWCNASCILQMYTALKEQYEVS 352

Query: 354 KKEIDDCKD-----MDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKR 396
            + + D  +      D ++     +++ ++G  +R+F+ M+K   ++R
Sbjct: 353 AESLKDLLEDGIVTKDRFSQVVTEVVEANYGWCWRRFWGMIKHQLKRR 400

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5R7N8|DPH3_PONAB DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1

 Score =  102 bits (253), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 51/56 (91%)

Query: 1  MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          M+V+HDE+EIEDF+YDED ETY+YPCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 1  MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIK 56

Down-regulation increases extracellular release of proteoglycans, indicating a possible role in the secretion process. Stimulates binding of GNEFR to SEC5.

Pongo abelii (taxid: 9601)

>sp|Q4R312|DPH3_MACFA DPH3 homolog OS=Macaca fascicularis GN=DPH3 PE=3 SV=1

 Score =  102 bits (253), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 51/56 (91%)

Query: 1  MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          M+V+HDE+EIEDF+YDED ETY+YPCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 1  MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIK 56

Down-regulation increases extracellular release of proteoglycans, indicating a possible role in the secretion process. Stimulates binding of GNEFR to SEC5.

Macaca fascicularis (taxid: 9541)

>sp|Q96FX2|DPH3_HUMAN DPH3 homolog OS=Homo sapiens GN=DPH3 PE=1 SV=1

 Score =  102 bits (253), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 51/56 (91%)

Query: 1  MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          M+V+HDE+EIEDF+YDED ETY+YPCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 1  MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIK 56

Down-regulation increases extracellular release of proteoglycans, indicating a possible role in the secretion process. Stimulates binding of GNEFR to SEC5.

Homo sapiens (taxid: 9606)

>sp|Q6VUC1|DPH3_CRIGR DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1

 Score =  102 bits (253), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 51/56 (91%)

Query: 1  MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          M+V+HDE+EIEDF+YDED ETY+YPCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 1  MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIK 56

Down-regulation increases extracellular release of proteoglycans, indicating a possible role in the secretion process. Stimulates binding of GNEFR to SEC5.

Cricetulus griseus (taxid: 10029)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
345483547	411	PREDICTED: jmjC domain-containing protei	0.741	0.822	0.488	1e-91
307208074	422	JmjC domain-containing protein 4 [Harpeg	0.767	0.829	0.465	5e-87
322803082	420	hypothetical protein SINV_05930 [Solenop	0.769	0.835	0.455	2e-85
383862030	419	PREDICTED: jmjC domain-containing protei	0.765	0.832	0.462	9e-85
328789207	419	PREDICTED: jmjC domain-containing protei	0.769	0.837	0.457	3e-84
340726915	419	PREDICTED: jmjC domain-containing protei	0.758	0.825	0.449	5e-84
307182696	421	JmjC domain-containing protein 4 [Campon	0.752	0.814	0.461	6e-84
350421437	419	PREDICTED: jmjC domain-containing protei	0.769	0.837	0.443	7e-84
332031019	418	JmjC domain-containing protein 4 [Acromy	0.800	0.873	0.437	1e-83
380018919	419	PREDICTED: jmjC domain-containing protei	0.769	0.837	0.448	2e-83

>gi|345483547|ref|XP_001601156.2| PREDICTED: jmjC domain-containing protein 4-like [Nasonia vitripennis]

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/348 (48%), Positives = 223/348 (64%), Gaps = 10/348 (2%)

Query: 94  SHIYPYCFNNFLSKNKPFILKSCVN-EWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCN 152
           S  Y   F +FL  NKP I  + +  +W+S  HW  +  PNFE+L   +G+ +VP+A+CN
Sbjct: 31  SMAYNEFFEDFLIPNKPCIFDAEITKDWSSRRHWNTDNAPNFEWLKECFGNCKVPIADCN 90

Query: 153 SYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFS 212
             YFNA  K +M ++ Y  YW +  +   S   PL YLKDWH  +      IY VP  F+
Sbjct: 91  KRYFNAQHKDDMLIRAYIDYWIDYRNCNYSNKMPLLYLKDWHCIKSHSNISIYNVPKYFA 150

Query: 213 SDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNE 272
           SDWLNEYY+ H    DDY FVYMGPK TWTP H DVF SYSWS NI G+K+WLL  PG E
Sbjct: 151 SDWLNEYYTAHPNLNDDYMFVYMGPKGTWTPFHVDVFTSYSWSANIVGKKRWLLFPPGQE 210

Query: 273 KYFKDSMGNLISDMRSVDWS-------TLPRDTVIIVE--QEAGDSIFVPSGWHHQVTNL 323
            Y K+  G+L+ D+ S +         T    T+  +E  QEAG  IFVPSGWHHQV NL
Sbjct: 211 NYLKNVNGDLVYDITSAELDNASNCNYTCKNKTLKSIEVIQEAGQIIFVPSGWHHQVWNL 270

Query: 324 EHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQVSFGINFR 383
           E TISINHNW+NG NI +V++ +   L AV KEI+DCKDMDDW +HCQ+ML+ SFG+N+ 
Sbjct: 271 EDTISINHNWLNGCNICNVWNSLRRELAAVIKEIEDCKDMDDWIAHCQIMLKASFGMNYL 330

Query: 384 QFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLK 431
           QF++ L FI +KRL S+ +   ++ +  W+L  +H +FDL++   VLK
Sbjct: 331 QFYEFLSFIAKKRLNSVISSVPVKSFETWLLGKNHCLFDLQQIRVVLK 378

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208074|gb|EFN85605.1| JmjC domain-containing protein 4 [Harpegnathos saltator]

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 167/359 (46%), Positives = 217/359 (60%), Gaps = 9/359 (2%)

Query: 82  TALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNE-WNSSLHWVQNKQPNFEYLSNH 140
             +P     ID +  Y   F+ +L +N+P I+ S   E W     WV    PNFE L   
Sbjct: 18  ACVPNTIERIDSTVTYNDFFSEYLIRNRPCIISSQATENWPCRREWVLEDAPNFEMLRTS 77

Query: 141 YGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFK 200
           +G   VPVA+CN  ++N+  K +M++  Y  YW N      S+T PL YLKDWH  ++F 
Sbjct: 78  FGHSVVPVADCNRKFYNSQFKDDMSVGSYLDYWINYRRNNYSKTMPLLYLKDWHCVKNFP 137

Query: 201 TEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICG 260
              IY VP  F SDWLNEYY  H E  DDY FVYMGPKE+WTPLHADVF SYSWS NI G
Sbjct: 138 GVPIYEVPQYFVSDWLNEYYIAHPELNDDYMFVYMGPKESWTPLHADVFTSYSWSANIVG 197

Query: 261 RKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTV--------IIVEQEAGDSIFV 312
           RK+WLL  P  E   +D  G L  D  S + +   +  +        + V QEAG+ IFV
Sbjct: 198 RKRWLLFPPHEEDRLRDLYGQLAYDAASEELNDRTKYKMYDSTKLKYLDVIQEAGEIIFV 257

Query: 313 PSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQL 372
           PSGWHHQV NL  TISINHNWING NI +V+  +   L +V KE+DDCKDM +W  HCQL
Sbjct: 258 PSGWHHQVWNLRDTISINHNWINGCNIINVWLALKKELRSVMKEVDDCKDMKNWNEHCQL 317

Query: 373 MLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLK 431
           ML+ S+G++++QFF+ + FI + RL ++     I  +  ++L  +H +FDLR   +VLK
Sbjct: 318 MLKTSYGMDYKQFFEFISFIAKNRLHAMAKNNQIINFNKYLLGRNHCLFDLRALKNVLK 376

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322803082|gb|EFZ23170.1| hypothetical protein SINV_05930 [Solenopsis invicta]

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 164/360 (45%), Positives = 215/360 (59%), Gaps = 9/360 (2%)

Query: 81  TTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNE-WNSSLHWVQNKQPNFEYLSN 139
           +T +P     ID +  Y   F+  L  NKP I+     E W     WV N  PN E L  
Sbjct: 17  STCVPDTIERIDSTVTYDEFFSKHLICNKPCIIGLQATENWPCRREWVSNGAPNLEVLRM 76

Query: 140 HYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDF 199
            +G   VP+A+CN  ++N+  K +M+++ Y  YW N      +++ PL YLKDWH  R+F
Sbjct: 77  LFGRSVVPIADCNRKFYNSQLKNDMSMESYLEYWVNYKQNCYTKSMPLLYLKDWHCMRNF 136

Query: 200 KTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNIC 259
               IY VP  F SDWLNEYY  H E  DDY FVYMGPKETWTPLHADVF SYSWS NI 
Sbjct: 137 PDISIYEVPQYFVSDWLNEYYIAHPELGDDYMFVYMGPKETWTPLHADVFTSYSWSANIV 196

Query: 260 GRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWS--------TLPRDTVIIVEQEAGDSIF 311
           GRK+WLL  P  E Y +D  G L  D  S + +           +     V QEAG+ IF
Sbjct: 197 GRKRWLLFPPHEEDYLRDLYGQLAYDAVSEELNDHTKYKMYNSKKLKCFDVTQEAGEIIF 256

Query: 312 VPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQ 371
           VPSGWHHQV NLE TISINHNWING NI +V+  +   L +V KE+DDCKDM +W  HCQ
Sbjct: 257 VPSGWHHQVWNLEDTISINHNWINGCNIANVWCTLKKELRSVMKEVDDCKDMKNWNEHCQ 316

Query: 372 LMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLK 431
           LML++S+G++++QF + + FI + RL ++   + +  +  +    +H +FDLR    +L+
Sbjct: 317 LMLKISYGMDYKQFLEFISFIAKNRLHAMIKKSQVVSFNKYRFGRNHCLFDLRALKTILE 376

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862030|ref|XP_003706487.1| PREDICTED: jmjC domain-containing protein 4-like [Megachile rotundata]

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 166/359 (46%), Positives = 216/359 (60%), Gaps = 10/359 (2%)

Query: 81  TTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNE-WNSSLHWVQNKQPNFEYLSN 139
           T  +  VDY IDPS  Y   F  +L  NKP I KS + E W+    W  +  P+F+ L  
Sbjct: 18  TAIIDWVDY-IDPSVTYDEFFTKYLIPNKPCIFKSSITENWSCKRQWNLDNAPDFDVLDI 76

Query: 140 HYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDF 199
            +G+  VPVA+CN  Y+N+  K +M +K+Y  YW        S++ PL YLKDWH  + F
Sbjct: 77  LFGNCVVPVADCNKKYYNSQSKDDMQMKDYLNYWIEYAKSNYSDSMPLLYLKDWHCPKLF 136

Query: 200 KTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNIC 259
               +Y VP  F+SDWLNEYY  + E  DDYRFVYMGPK TWTPLHADVF SYSWS NI 
Sbjct: 137 PNAPMYNVPQYFASDWLNEYYIANPELNDDYRFVYMGPKGTWTPLHADVFGSYSWSANIV 196

Query: 260 GRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTV--------IIVEQEAGDSIF 311
           G+K+WLL  PG E + +D  G LI D  S + +   +           I V Q  G+ +F
Sbjct: 197 GKKRWLLFPPGQEDFLRDIHGELIYDATSEELNDYSKYKAYDKRALKYIDVIQTEGEIMF 256

Query: 312 VPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQ 371
           VPSGWHHQV N+E TISINHNWING NI +V+H +   L +V KE++DCKDM+DW   CQ
Sbjct: 257 VPSGWHHQVWNIEDTISINHNWINGCNIMNVWHGLKKELSSVMKEVNDCKDMNDWAEQCQ 316

Query: 372 LMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVL 430
           L+L+ ++G+++  FFD LKFI Q RL        +  +  +    +H +FDL     VL
Sbjct: 317 LILKSTYGMDYFLFFDFLKFIAQTRLNMFSQKEEVISFNKYKFGSNHCIFDLHSIKLVL 375

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789207|ref|XP_395655.4| PREDICTED: jmjC domain-containing protein 4-like isoform 1 [Apis mellifera]

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/361 (45%), Positives = 223/361 (61%), Gaps = 10/361 (2%)

Query: 72  NSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNE-WNSSLHWVQNK 130
           N    IN  T  +  +DY +DPS  Y   F+ +L +NKP I KS + E W+    W  + 
Sbjct: 9   NRRLSINKKTAIIDWIDY-VDPSIKYDEFFSKYLMENKPCIFKSNIIENWSCKRQWNLDG 67

Query: 131 QPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYL 190
            P+F+ L   +GD  VPVA+CN  Y+N+  K +M +K+Y  YW +      S++ PL YL
Sbjct: 68  TPDFDVLDILFGDCIVPVADCNKKYYNSQSKDDMKMKDYLNYWIDYAKNNYSDSMPLLYL 127

Query: 191 KDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFH 250
           KDWH  + F    +Y VP  F+SDWLNEYY  +    DDYRFVYMGPK TWTPLHADVF 
Sbjct: 128 KDWHCPKLFPNAPMYTVPEYFASDWLNEYYIANPSLNDDYRFVYMGPKGTWTPLHADVFG 187

Query: 251 SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPR----DTVII----V 302
           SYSWS NI G+K+WLL  PG E + KD  G L  D  S + +   R    D  +I    V
Sbjct: 188 SYSWSANIVGKKRWLLFPPGQEDFLKDIHGQLTYDATSKELNDYTRYKAYDKRVIKYIDV 247

Query: 303 EQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKD 362
            Q+ G+ IFVPSGW+HQV N+E TIS+NHNWIN  NI +V+H +   L +V KE+ DCKD
Sbjct: 248 IQQEGEIIFVPSGWYHQVWNIEDTISLNHNWINSCNIMNVWHGLKKELNSVIKEVSDCKD 307

Query: 363 MDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFD 422
           M++W  HCQL+L+ ++G+++  FFD L FI ++RL  + N   +  +  + L  +H +FD
Sbjct: 308 MNNWAEHCQLILKSTYGMDYNLFFDFLTFITKQRLNMVLNKEDVISFNKYKLGFNHCIFD 367

Query: 423 L 423
           L
Sbjct: 368 L 368

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726915|ref|XP_003401797.1| PREDICTED: jmjC domain-containing protein 4-like [Bombus terrestris]

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 160/356 (44%), Positives = 221/356 (62%), Gaps = 10/356 (2%)

Query: 77  INVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNE-WNSSLHWVQNKQPNFE 135
           +N  TT +  +DY +D S  Y   F+ +L +NKP I KS + E W+    W  +  P+F+
Sbjct: 14  VNKKTTIIDWIDY-VDASITYDDFFSKYLMENKPCIFKSNITENWSCKRQWNLDGAPDFD 72

Query: 136 YLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHF 195
            L   +GD  VPVA+C   Y+N+  K +M +K+Y  YW +      S++  L YLKDWH 
Sbjct: 73  VLDISFGDCIVPVADCKKRYYNSQSKDDMKMKDYLDYWMDYAKNNYSDSMALLYLKDWHC 132

Query: 196 TRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWS 255
            + F    +Y VP  F+SDWLNEYY  H +  DDYRFVYMGPK TWTPLHADVF SYSWS
Sbjct: 133 QKLFPNAPMYTVPEYFASDWLNEYYMAHPDLNDDYRFVYMGPKGTWTPLHADVFGSYSWS 192

Query: 256 VNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVD------WSTLPRDTV--IIVEQEAG 307
            NI G+K+WLL  PG E + +D  G LI D  S +      + T  + ++  I V Q+ G
Sbjct: 193 ANIVGKKRWLLFPPGQEDFLRDIHGQLIYDATSKELENYAVYKTYDKRSIKYIDVIQKEG 252

Query: 308 DSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWT 367
           + IFVPSGWHHQV N+E TIS+NHNWING NI +V+H +   L +V KE+ DCKDM +W 
Sbjct: 253 EIIFVPSGWHHQVWNIEDTISLNHNWINGCNIINVWHGLKKELNSVMKEVSDCKDMSNWA 312

Query: 368 SHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDL 423
             CQL+L+ ++G+++  FF+ L FI ++RL+ +     +  +  + L   H +FDL
Sbjct: 313 EQCQLILKSTYGMDYNLFFNFLTFIAKRRLSMVLKKEDVITFNRYKLGFSHCVFDL 368

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182696|gb|EFN69820.1| JmjC domain-containing protein 4 [Camponotus floridanus]

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 163/353 (46%), Positives = 215/353 (60%), Gaps = 10/353 (2%)

Query: 82  TALPQVDYNIDPSHI-YPYCFNNFLSKNKPFILKSCVNE-WNSSLHWVQNKQPNFEYLSN 139
           T +P     I+ S + Y   F+ +L  N+P ++ S   E W    +WV N  PNFE L  
Sbjct: 18  TRIPDTIEKIEESMVTYNDFFSKYLIYNQPCLINSQATENWPCRRNWVLNGAPNFEVLRT 77

Query: 140 HYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDF 199
            +G   VPVA+CN  ++N+  K +M +K Y  YW +      +++ PL YLKDWH  +DF
Sbjct: 78  LFGRTIVPVADCNKKFYNSQFKDDMPMKSYLDYWIDYKRNNYAKSMPLLYLKDWHCVKDF 137

Query: 200 KTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNIC 259
               IY VP  F SDWLNEYY  H E  DDY F+YMGPKETWTPLHADVF SYSWS NI 
Sbjct: 138 PDIPIYEVPQYFVSDWLNEYYIAHPELNDDYMFIYMGPKETWTPLHADVFTSYSWSANII 197

Query: 260 GRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPR----DTVII----VEQEAGDSIF 311
           GRK+WL   P  E + +D  G L  D  S D +   +    D+  +    + QEAG+ IF
Sbjct: 198 GRKRWLFFPPHEEDHLRDLYGQLAYDAVSEDLNDRTKYRTYDSKKLKCFDIIQEAGEIIF 257

Query: 312 VPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQ 371
           VPSGWHHQV NLE TISINHNWING NI +V+H +   L +V KE+DDCKDM +W  HCQ
Sbjct: 258 VPSGWHHQVWNLEDTISINHNWINGCNIGNVWHGLKRELRSVMKEVDDCKDMKNWNEHCQ 317

Query: 372 LMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLR 424
           LML+ S+G++++QF   + FI + RL ++     +  +  +    +H +FDLR
Sbjct: 318 LMLKASYGMDYKQFLQFISFIAKNRLHAMLKKNQVISFRKYCFGYNHCLFDLR 370

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421437|ref|XP_003492843.1| PREDICTED: jmjC domain-containing protein 4-like [Bombus impatiens]

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 160/361 (44%), Positives = 221/361 (61%), Gaps = 10/361 (2%)

Query: 72  NSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNE-WNSSLHWVQNK 130
           N    +N  TT +  +DY +D S  Y   F+ +L +NKP I KS + E W+    W  + 
Sbjct: 9   NRRLSVNKKTTIIDWIDY-VDASITYDDFFSKYLMENKPCIFKSNITENWSCKRQWNLDG 67

Query: 131 QPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYL 190
            P+F+ L   +GD  VPVA+C   Y+N+  K +M +K+Y  YW +      S++  L YL
Sbjct: 68  APDFDVLDISFGDCIVPVADCKKRYYNSQSKDDMKMKDYLDYWMDYAKNNYSDSMALLYL 127

Query: 191 KDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFH 250
           KDWH  + F    +Y VP  F+SDWLNEYY  H +  DDYRFVYMGPK TWTPLHADVF 
Sbjct: 128 KDWHCQKLFPNAPMYTVPEYFASDWLNEYYMAHPDLNDDYRFVYMGPKGTWTPLHADVFG 187

Query: 251 SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVD------WSTLPRDTV--IIV 302
           SYSWS NI G+K+WLL  PG E + +D  G LI D  S +      +    + ++  I V
Sbjct: 188 SYSWSANIVGKKRWLLFPPGQEDFLRDIHGQLIYDATSKELENYAVYKAYDKRSIKYIDV 247

Query: 303 EQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKD 362
            Q+ G+ IFVPSGWHHQV N+E TIS+NHNWING NI +V+H +   L +V KE+ DCKD
Sbjct: 248 IQKEGEIIFVPSGWHHQVWNIEDTISLNHNWINGCNIINVWHGLKKELNSVMKEVSDCKD 307

Query: 363 MDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFD 422
           M +W   CQL+L+ ++G+++  FF+ L FI ++RL+ +     +  +  + L   H +FD
Sbjct: 308 MSNWAEQCQLILKSTYGMDYNLFFNFLTFIAKRRLSMVLKKEDVITFNRYKLGFSHCVFD 367

Query: 423 L 423
           L
Sbjct: 368 L 368

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031019|gb|EGI70634.1| JmjC domain-containing protein 4 [Acromyrmex echinatior]

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 166/379 (43%), Positives = 222/379 (58%), Gaps = 14/379 (3%)

Query: 62  SVMLMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILK-SCVNEW 120
           S ++ +S     NE   VTT         ID +  Y   F+ +L  NKP ++    +  W
Sbjct: 2   STLIEISSGSYLNEDDCVTTMI-----ERIDSTVTYNDFFSKYLMCNKPCVISFQAIKNW 56

Query: 121 NSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGK 180
                WV N  PNFE L   +G   VPVA+CN  ++N+  K NM +K Y  YW +     
Sbjct: 57  PCRHEWVLNGAPNFEMLRKLFGHSIVPVADCNRKFYNSQFKNNMPMKSYLEYWADYKRSC 116

Query: 181 LSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKET 240
             ++ PL YLKDWH  R F    +Y VP  F SDWLNEYY  H E  DDY FVYMGPKET
Sbjct: 117 YDKSMPLLYLKDWHCVRSFSNVPMYEVPQYFVSDWLNEYYIAHPELNDDYMFVYMGPKET 176

Query: 241 WTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTV- 299
           WTPLHADVF SYSWS NI G+K+WLL  P  E + +D  G L+ D  S + +   +  + 
Sbjct: 177 WTPLHADVFTSYSWSANIVGKKRWLLFPPHEEDHLRDLYGQLVYDAVSEELNDHTKYKMY 236

Query: 300 -------IIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEA 352
                    V QEAG+ +FVPSGWHHQV NLE TISINHNWING NI +V++ +   L +
Sbjct: 237 DSKKLKCFDVIQEAGEIMFVPSGWHHQVWNLEDTISINHNWINGCNITNVWYALKKELRS 296

Query: 353 VKKEIDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNW 412
           V KE+DDCKDM +W  HCQLML+ S+G++++QF + + FI + RL ++   + +  +  +
Sbjct: 297 VMKEVDDCKDMKNWNEHCQLMLKTSYGMDYKQFLEFISFIAKNRLHAMIKKSQVISFNKY 356

Query: 413 ILSLDHTMFDLRKASDVLK 431
               +H +FDLR    +L+
Sbjct: 357 HFGHNHCLFDLRTLKVILE 375

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018919|ref|XP_003693366.1| PREDICTED: jmjC domain-containing protein 4-like [Apis florea]

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 162/361 (44%), Positives = 220/361 (60%), Gaps = 10/361 (2%)

Query: 72  NSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNE-WNSSLHWVQNK 130
           N    IN  T  +  +DY +DPS  Y   F+ +L +NKP I KS + E W+    W  + 
Sbjct: 9   NRRLSINKKTAIIDWIDY-VDPSIKYDEFFSKYLMENKPCIFKSNITENWSCKRQWNLDG 67

Query: 131 QPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYL 190
            P+F+ L   +GD  VPVA+CN  Y+N+  K +M +K+Y  YW +      S + PL YL
Sbjct: 68  TPDFDVLDILFGDCIVPVADCNKKYYNSQSKDDMKMKDYLNYWIDYAKNNYSNSMPLLYL 127

Query: 191 KDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFH 250
           KDWH  + F    +Y VP  F+SDWLNEYY  +    DDYRFVYMGPK TWTPLHADVF 
Sbjct: 128 KDWHCPKLFPNAPMYTVPEYFASDWLNEYYIANPSLNDDYRFVYMGPKGTWTPLHADVFG 187

Query: 251 SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTV--------IIV 302
           SYSWS NI G+K+WLL  PG E + KD  G L  D  S + +   R           I +
Sbjct: 188 SYSWSANIVGKKRWLLFPPGQEDFLKDIHGQLTYDATSKELNDYTRYKAYDKRVLKYIDI 247

Query: 303 EQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKD 362
            Q+ G+ IFVPSGW+HQV N+E TIS+NHNWIN  NI +V+H +   L +V KE+ DCKD
Sbjct: 248 IQQEGEIIFVPSGWYHQVWNIEDTISLNHNWINSCNIMNVWHGLKKELNSVIKEVSDCKD 307

Query: 363 MDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFD 422
           M++W  HCQL+L+ ++G+++  FFD L FI ++RL  + +   +  +  + L  +H +FD
Sbjct: 308 MNNWAEHCQLILKSTYGMDYNLFFDFLTFITKQRLNMVLDKEDVISFNKYKLGFNHCIFD 367

Query: 423 L 423
           L
Sbjct: 368 L 368

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
MGI|MGI:2144404	427	Jmjd4 "jumonji domain containi	0.745	0.796	0.432	2.7e-77
ZFIN|ZDB-GENE-060929-636	422	jmjd4 "jumonji domain containi	0.767	0.829	0.418	4e-74
FB|FBgn0032671	425	CG7200 [Drosophila melanogaste	0.627	0.672	0.436	1.1e-66
WB|WBGene00011563	367	jmjd-4 [Caenorhabditis elegans	0.625	0.776	0.393	3.6e-50
TAIR|locus:2161967	462	AT5G63080 "AT5G63080" [Arabido	0.620	0.612	0.341	4.1e-49
POMBASE|SPAC25H1.02	464	jmj1 "histone demethylase Jmj1	0.565	0.556	0.314	1.5e-33
DICTYBASE|DDB_G0270006	983	jcdI "transcription factor jum	0.517	0.240	0.294	1.1e-17
TAIR|locus:2032090	943	AT1G78280 [Arabidopsis thalian	0.495	0.239	0.263	2e-16
FB|FBgn0038948	408	PSR "phosphatidylserine recept	0.478	0.534	0.296	2.7e-15
UNIPROTKB|Q6NYC1	403	JMJD6 "Bifunctional arginine d	0.475	0.538	0.272	3.7e-14

MGI|MGI:2144404 Jmjd4 "jumonji domain containing 4" [Mus musculus (taxid:10090)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 155/358 (43%), Positives = 219/358 (61%)

Query:   104 FLSKNKPFILKSCVNE-WNSSLHWVQNK-QPNFEYLSNHYGDIEVPVANCNSYYFNAHEK 161
             FL  N P +  S   E W S   WV ++ +P+FEYL   YGD  VPVANC    +N++ K
Sbjct:    50 FLLPNLPCVFSSAFTEGWGSRRRWVTSEGKPDFEYLQQKYGDAVVPVANCGVREYNSNPK 109

Query:   162 TNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKT---EDIYRVPNVFSSDWLNE 218
              +M+ ++Y  YW++ I G  S +    YLKDWH  RD      EDI+ +P  FSSDWLNE
Sbjct:   110 EHMSFRDYISYWKDYIQGSYSSSRGCLYLKDWHLCRDSLVNDLEDIFTLPVYFSSDWLNE 169

Query:   219 YYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDS 278
             ++   + + DDYRFVY GP+ TW+P HAD+F S+SWSVNICG+K+WL   PG E+  +D 
Sbjct:   170 FWD--VLNVDDYRFVYAGPRGTWSPFHADIFRSFSWSVNICGKKKWLFFPPGEEEALRDC 227

Query:   279 MGNLISDMRS---VDWSTLPR----DTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINH 331
              GNL  D+ S   +D    P+       I V QE G+ +FVPSGWHHQV NL+ TISINH
Sbjct:   228 HGNLPYDVTSTELLDTHLYPKIQHHSLPIEVIQEPGEMVFVPSGWHHQVYNLDDTISINH 287

Query:   332 NWINGTNIDHVYHEMVSHLEAVKKEIDDCKD-MDDWTSHCQLMLQVSFGINFRQFFDMLK 390
             NW+NG N+ +++H +   L+AV+ E+++ KD M DW  HCQ++++   GINF +F+  LK
Sbjct:   288 NWVNGCNLPNMWHFLQQELQAVQHEVEEWKDSMPDWHHHCQVIMKSCTGINFEEFYHFLK 347

Query:   391 FICQKRLTSLKNGTTIRLYGNWILSL--DHTMFDLRKASDVLKLCAQHEDWDLKLETN 446
              I +KRL  L+ G       +  L L      FD+ + +DVL     + D+  +++T+
Sbjct:   348 VIAEKRLLVLEQGLKGDSGDSRSLDLGLQQAAFDIGRLADVLASVVVNPDFQ-RVDTS 404

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060929-636 jmjd4 "jumonji domain containing 4" [Danio rerio (taxid:7955)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 155/370 (41%), Positives = 221/370 (59%)

Query:    87 VDYNIDPSHIYPYCFNNFLSKNKPFIL-KSCVNEWNSSLHWVQNK-QPNFEYLSNHYGDI 144
             ++Y I+    Y   F N+L  N+P +  K    EWN    WV  + +PN + L + + + 
Sbjct:    29 IEY-IEREIPYSKFFKNYLIPNQPCMFSKKFTEEWNCRKKWVTAEGKPNLQRLLHEFDET 87

Query:   145 EVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDI 204
              VPVANC+   +NA+ K  M  KE+  YW+  I    S  +   YLKDWH  R+F   +I
Sbjct:    88 PVPVANCSVKEYNANPKQIMPFKEFIQYWRESIQNGHSSPKGCLYLKDWHMQRNFPEHNI 147

Query:   205 YRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQW 264
             Y+ P  FSSDWLNEY+ + +E  DDYRFVYMGPK +WTP HADVF SYSWS NICGRK+W
Sbjct:   148 YKTPIYFSSDWLNEYW-DTIE-VDDYRFVYMGPKGSWTPFHADVFRSYSWSANICGRKKW 205

Query:   265 LLLAPGNEKYFKDSMGNLISDMRSV---DWSTLPR--DTVIIVE--QEAGDSIFVPSGWH 317
             LL  PG E + +D  GNL  D+ +    D     +  +    +E  QEAG+ IFVPSGWH
Sbjct:   206 LLYPPGQEDFLRDCHGNLAYDVTAPILQDKGLYAQFEEACQPLEIIQEAGEIIFVPSGWH 265

Query:   318 HQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKD-MDDWTSHCQLMLQV 376
             HQV NLE TISINHNW+NG N+D ++  +   L +V++EI++ +D MD W  HCQ++++ 
Sbjct:   266 HQVYNLEDTISINHNWLNGCNLDIMWQFLQDELSSVQREIEEWRDTMDTWHQHCQVIMKS 325

Query:   377 SFGINFRQFFDMLKFICQKRLTSL----KNGTTIR-LYGNWILSLD--HTMFDLRKASDV 429
               GI++ +F   LK I   R++ L    +N  + + L    + +L   H  FDL++   +
Sbjct:   326 CTGIDYAEFASFLKTIANNRISFLNSSPRNADSCQDLLAESLCALGPHHAAFDLQRVLHI 385

Query:   430 LKLCAQHEDW 439
              ++   +ED+
Sbjct:   386 FEIMLNNEDF 395

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0032671 CG7200 [Drosophila melanogaster (taxid:7227)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 134/307 (43%), Positives = 180/307 (58%)

Query:   133 NFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLS---------- 182
             NF+YL     D  VPVANCNS YFN+H K  +   +Y   W++ I+ + S          
Sbjct:    88 NFDYLKTKISDGPVPVANCNSSYFNSHTKLELNFHDYLAKWRSSIESQSSAAWTSAEVNS 147

Query:   183 ETEPL----YYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPK 238
                P      YLKDWH        + Y+VP  F+SDWLNE   +  + KDDYRFVYMGPK
Sbjct:   148 NVAPASGDNLYLKDWHLAAQMPGYNFYKVPKYFASDWLNEQLIQ--QGKDDYRFVYMGPK 205

Query:   239 ETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDT 298
              +WT  HADVF S+SWS NI G K+WL++ PG E    D +GNL     S+D   L    
Sbjct:   206 NSWTSYHADVFGSFSWSTNIVGLKKWLIMPPGEELKLNDRLGNLPF---SIDEKMLDEHN 262

Query:   299 V--IIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKE 356
             V    + Q A +++FVPSGW HQV NL  TIS+NHNW NG NI  V+  + ++L+AV  E
Sbjct:   263 VRYYTINQRANEAVFVPSGWFHQVWNLTDTISVNHNWFNGCNISMVWQNLKNNLKAVCNE 322

Query:   357 IDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSL 416
             I DC+ MD++ +HCQ ML+ SFGIN+  F ++L+FI  +RL      T   L+ ++ ++ 
Sbjct:   323 ISDCQQMDNFEAHCQTMLRASFGINYLDFIELLEFIAARRLAEGTVATKFLLFDSYTMND 382

Query:   417 DHTMFDL 423
              H  +DL
Sbjct:   383 YHVQYDL 389

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00011563 jmjd-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 125/318 (39%), Positives = 175/318 (55%)

Query:    92 DPSHIYPYCFNNFLSKNKPFILKS-CVNEWNSSLHWV-QNKQPNFEYLSNHYGDIEVPVA 149
             DPS  +      F  KN+PFIL     + W +   WV  N QPN EYL   YGD +VP+ 
Sbjct:    10 DPSTPWLEILVKFGFKNEPFILGEWSTSGWTAVKDWVLPNGQPNKEYLKKSYGDSKVPIL 69

Query:   150 NCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSET-EPLYYLKDWHFTRDFKTEDIYRVP 208
              C     N ++ T  TLKE+           L E  +P  YLKDWHF  +F T   Y + 
Sbjct:    70 -CGG---NQYKTT--TLKEF-----------LEEMGDPEVYLKDWHFQNEFGTSS-YSLH 111

Query:   209 NVFSSDWLN--EYYSEHLEHK--DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQW 264
               FS D++N   + SE  E+   DDYRFVY+G   +WT LH+DV  S+SWS NICGRKQW
Sbjct:   112 PFFSRDFVNCEPWTSEKSENPFGDDYRFVYIGASGSWTKLHSDVVSSHSWSANICGRKQW 171

Query:   265 LLLAPGNEKYFKDSM--GNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTN 322
              ++ PG+E  F+ S+     + D+R  +     +  VI   QE G+ +FVPS W+HQ  N
Sbjct:   172 FMMPPGSENLFRSSVTESGFVDDIREYE-RLFEQAKVIKFVQEPGEIVFVPSNWYHQAHN 230

Query:   323 LEHTISINHNWINGTNIDHVYHEMVSHLEA-VKKEIDDCKDM---DDWTSHCQLMLQVSF 378
             LE TISINHNW+N TN+ H+  E +S  E  V++E+ DC D+   +++     L+L    
Sbjct:   231 LEDTISINHNWMNSTNL-HLVQEFLSRRELDVREELQDCVDLFSAEEFEEKVDLVLFADA 289

Query:   379 GINFRQFFDMLKFICQKR 396
              +N  +F  + + + + R
Sbjct:   290 RLNNSKFRKLCELVKESR 307

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

TAIR|locus:2161967 AT5G63080 "AT5G63080" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 102/299 (34%), Positives = 167/299 (55%)

Query:   104 FLSKNKPFILKSCVNEWNSSLHWV-QNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKT 162
             +L+KN+P ++     +W +   WV +N  PN    + H+G   V VA+C++  F   ++ 
Sbjct:    26 YLAKNQPVVISDLTEDWRAREDWVSENGNPNLHVFATHFGKSRVQVADCDTREFTDQKRL 85

Query:   163 NMTLKEYTIYWQNK--IDGKLSETEPLYYLKDWHFTRDFKTEDIYRVP--NVFSSDWLNE 218
              M++ E+   W NK  I+  +   +  +++K++     ++T  ++     NV+  ++   
Sbjct:    86 EMSVTEFVEQWTNKDSIEESVLYLKDWHFVKEYPDYTAYQTPPLFSDDWLNVYLDNYQMH 145

Query:   219 YYSEHLEHKD-----DYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGN-- 271
                +  +  D     DYRFVYMG K +WTPLHADVF SYSWS N+CG+K+WL L P    
Sbjct:   146 EDRDSFQKYDQISCSDYRFVYMGGKGSWTPLHADVFRSYSWSANVCGKKRWLFLPPPQSH 205

Query:   272 ---EKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTIS 328
                ++Y K+ + ++  ++    +    + T +   QE G+ IFVPSGWHHQV NLE TIS
Sbjct:   206 LVYDRYMKNCVYDIFEEVNETKFPGFKKTTWLECIQEPGEIIFVPSGWHHQVYNLEDTIS 265

Query:   329 INHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDM-DDWTSHCQLMLQVSFGINFRQFF 386
             INHNW+N  N+  V+  +    +  ++ I+D +D+ DD+ + CQ  L  + G+N   FF
Sbjct:   266 INHNWLNAYNLSWVWDLLWKDYKDTEESIEDIRDICDDFEAICQRNLAANTGMNLNDFF 324

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

POMBASE|SPAC25H1.02 jmj1 "histone demethylase Jmj1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 91/289 (31%), Positives = 146/289 (50%)

Query:   132 PNFEYLSNHYGDIEVPVANCNSY-YFNAHEKTNMTLK-------EYTIYWQNKIDGKLSE 183
             PN+EYL  +YG I VP+A CN    + +  +  + LK       +  +  Q +     ++
Sbjct:   119 PNYEYLEENYGTIPVPLAYCNEKDRYGSQRRETVPLKSALHELRDEQVQLQCR-QAPSNQ 177

Query:   184 TEPLYYLKDWHFTRDFKTEDI-YRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWT 242
                  Y KD H  R     D  Y  P++F+ DWLN Y  +     DD+RF Y+G   T T
Sbjct:   178 ALKSLYAKDMHLFRHLDPADFPYSTPDIFADDWLNAYVIDC--ESDDFRFAYLGSHLTTT 235

Query:   243 PLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTL------P- 295
              LH DV+ S+S+SVN+CG K WL + P + +    ++ +L  D +   W T       P 
Sbjct:   236 GLHTDVYASHSFSVNLCGVKCWLFIDPKDLQ----TIASLYDDQQLPSWITKDDLFRGPL 291

Query:   296 ---RDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEA 352
                R  + I+ Q  G ++FVPSGW+HQV N+  T+SINHNW N + I  +Y  +    E 
Sbjct:   292 VNHRHLIKILFQYPGQTVFVPSGWYHQVLNIGTTLSINHNWCNASCILQMYTALKEQYEV 351

Query:   353 VKKEIDDCKD-----MDDWTSHCQLMLQVSFGINFRQFFDMLKFICQKR 396
               + + D  +      D ++     +++ ++G  +R+F+ M+K   ++R
Sbjct:   352 SAESLKDLLEDGIVTKDRFSQVVTEVVEANYGWCWRRFWGMIKHQLKRR 400

GO:0000790 "nuclear chromatin" evidence=ISM

GO:0006338 "chromatin remodeling" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISM

GO:0016577 "histone demethylation" evidence=ISM

GO:0032452 "histone demethylase activity" evidence=ISM

GO:0033554 "cellular response to stress" evidence=IEP

DICTYBASE|DDB_G0270006 jcdI "transcription factor jumonji, jmjC domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 248 (92.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 80/272 (29%), Positives = 121/272 (44%)

Query:   128 QNKQPNFEYLSNHYGDIEVPVANCNSYYFN-AHE---KTNMTLKEYTIYWQNKIDGKLSE 183
             Q   P  E   N + + E  +  C    F  +H+   +  MT ++Y  Y + + D     
Sbjct:   209 QRGTPMME--KNEWSE-ERLIERCGDVVFKISHQDNKRIQMTFRDYCQYMKTQTD----- 260

Query:   184 TEPLYYLKDWHFTRDFKTE-DIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWT 242
              EPLY   D  F     +  D Y +P  F  D L +Y  E  EH+  +R++ +GP+ +  
Sbjct:   261 EEPLYVF-DQAFGEKVPSLLDDYNIPKFFPED-LFKYNGE--EHRPHFRWIVIGPERSGA 316

Query:   243 PLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDS---MGNLISDMRSVDWST-----L 294
               H D   + +W+  I GRK+WL+  P    Y  +S   +  +     S+ W       L
Sbjct:   317 SWHIDPAGTSAWNSLISGRKRWLMYPPNFTPYTVESDEVVDKIYGSPPSLLWLLEVYPYL 376

Query:   295 PRD-TVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAV 353
             P D   I   QE G++IFVP GW H V N+E +I++  N+ N  N D V  ++ +     
Sbjct:   377 PPDYRPIECIQEPGETIFVPGGWWHMVLNMEQSIAVTQNFCNSQNFDEVCSDLAN----- 431

Query:   354 KKEIDDCKDMDDWTSHCQLMLQVSFGINFRQF 385
                 D  KD DD+  H  L  +  F   F QF
Sbjct:   432 ----DQKKDYDDFKKHL-LTSRPDFQNKFNQF 458

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2032090 AT1G78280 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 68/258 (26%), Positives = 113/258 (43%)

Query:   101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHE 160
             F+      KP +L    + W +S  W        + LS  YG++   ++        +  
Sbjct:   138 FSKEYDAKKPVLLSGLADSWPASNTWT------IDQLSEKYGEVPFRISQ------RSPN 185

Query:   161 KTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYY 220
             K +M  K+Y  Y + + D      +PLY   D       +    Y VP++F  DW  E  
Sbjct:   186 KISMKFKDYIAYMKTQRD-----EDPLYVFDDKFGEAAPELLKDYSVPHLFQEDWF-EIL 239

Query:   221 SEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEK-----YF 275
              +  E +  YR++ +GP+ +    H D   + +W+  +CGRK+W L  PG        + 
Sbjct:   240 DK--ESRPPYRWLIVGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHV 297

Query:   276 KDSMGNLISDM-RSVDW--STLP----RDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTIS 328
              +  G++  D   S+ W     P     D  I      G++I+VPSGW H + NLE T++
Sbjct:   298 NEDDGDVSIDTPSSLQWWLDYYPLLADEDKPIECTLLPGETIYVPSGWWHCILNLEPTVA 357

Query:   329 INHNWINGTNIDHVYHEM 346
             +  N++N  N   V  +M
Sbjct:   358 VTQNFVNKENFGFVCLDM 375

GO:0005634 "nucleus" evidence=ISM

GO:0007166 "cell surface receptor signaling pathway" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

FB|FBgn0038948 PSR "phosphatidylserine receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 218 (81.8 bits), Expect = 2.7e-15, P = 2.7e-15
 Identities = 76/256 (29%), Positives = 112/256 (43%)

Query:   109 KPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKE 168
             KP +++ C + W +   W   +      L+  Y + +      N  Y        M +K 
Sbjct:    73 KPVVIRGCTDGWLALEKWTLAR------LAKKYRNQKFKCGEDNEGY-----SVKMKMKY 121

Query:   169 YTIYWQNKIDGKLSETEPLYYLKDWHFT---RDFKTEDIYRVPNVFSSDWLNEYYSEHLE 225
             Y  Y Q+  D       PLY   D  F    R  K  D Y VP  F  D L +Y  E+  
Sbjct:   122 YVEYMQSTRDDS-----PLYIF-DSSFGEHHRRRKLLDDYVVPKYFRDD-LFQYCGEN-- 172

Query:   226 HKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYF---KDSMGNL 282
              +  YR+  MGP  + T +H D   + +W+  I G K+W L      K       +MG  
Sbjct:   173 RRPPYRWFVMGPARSGTGIHIDPLGTSAWNTLIRGHKRWCLFPTQTPKELLKVTSAMGGK 232

Query:   283 ISDMRSVDW-STL-PRDTV---------IIVEQEAGDSIFVPSGWHHQVTNLEHTISINH 331
               D  ++ W ST+ PR  +         I V Q AG+++FVP GW H V N++ TI+I  
Sbjct:   233 QRD-EAITWFSTIYPRTQLPSWPEQYRPIEVLQGAGETVFVPGGWWHVVLNMDDTIAITQ 291

Query:   332 NWINGTNIDHVYHEMV 347
             N+ + TN   V+H+ V
Sbjct:   292 NFSSQTNFPCVWHKTV 307

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IGI;IMP

GO:0046329 "negative regulation of JNK cascade" evidence=IGI

GO:0035212 "cell competition in a multicellular organism" evidence=IMP

UNIPROTKB|Q6NYC1 JMJD6 "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6" [Homo sapiens (taxid:9606)]

 Score = 208 (78.3 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 70/257 (27%), Positives = 110/257 (42%)

Query:   109 KPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKE 168
             KP +L +    W++   W        E L   Y + +      N  Y        M +K 
Sbjct:    68 KPVVLLNAQEGWSAQEKWT------LERLKRKYRNQKFKCGEDNDGY-----SVKMKMKY 116

Query:   169 YTIYWQNKIDGKLSETEPLYYLKDW---HFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLE 225
             Y  Y ++  D       PLY        H  R    ED Y+VP  F+ D L +Y  E  +
Sbjct:   117 YIEYMESTRDDS-----PLYIFDSSYGEHPKRRKLLED-YKVPKFFTDD-LFQYAGE--K 167

Query:   226 HKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNE----KYFKDSMGN 281
              +  YR+  MGP  + T +H D   + +W+  + G K+W L          K  +D  GN
Sbjct:   168 RRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGN 227

Query:   282 LISDMRSVDWSTL--PRDTV---------IIVEQEAGDSIFVPSGWHHQVTNLEHTISIN 330
                +  ++ W  +  PR  +         + + Q+ G+++FVP GW H V NL+ TI+I 
Sbjct:   228 QQDE--AITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAIT 285

Query:   331 HNWINGTNIDHVYHEMV 347
              N+ + TN   V+H+ V
Sbjct:   286 QNFASSTNFPVVWHKTV 302

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0042116 "macrophage activation" evidence=IEA

GO:0043654 "recognition of apoptotic cell" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0033746 "histone demethylase activity (H3-R2 specific)" evidence=IDA

GO:0033749 "histone demethylase activity (H4-R3 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0018395 "peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine" evidence=IDA

GO:0005506 "iron ion binding" evidence=IDA

GO:0003727 "single-stranded RNA binding" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0002040 "sprouting angiogenesis" evidence=ISS

GO:0070815 "peptidyl-lysine 5-dioxygenase activity" evidence=IDA

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=IMP

GO:0042802 "identical protein binding" evidence=IDA

GO:0070078 "histone H3-R2 demethylation" evidence=IDA

GO:0070079 "histone H4-R3 demethylation" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZHV5	JMJD4_CHICK	No assigned EC number	0.4247	0.7719	0.8282	yes	N/A
Q6C0G3	DPH3_YARLI	No assigned EC number	0.6037	0.1162	0.7681	yes	N/A
Q6CMG4	DPH3_KLULA	No assigned EC number	0.5714	0.1206	0.6707	yes	N/A
Q9H9V9	JMJD4_HUMAN	No assigned EC number	0.4097	0.7675	0.7559	yes	N/A
Q08BY5	JMJD4_DANRE	No assigned EC number	0.3979	0.7763	0.8388	yes	N/A
Q3E840	DPH3_YEAST	No assigned EC number	0.5636	0.1184	0.6585	yes	N/A
Q4I9U7	DPH3_GIBZE	No assigned EC number	0.5535	0.1206	0.5092	yes	N/A
Q8STR6	DPH3_ENCCU	No assigned EC number	0.5769	0.1140	0.5591	yes	N/A
Q74Z32	DPH3_ASHGO	No assigned EC number	0.6071	0.1206	0.6707	yes	N/A
Q9VJ97	JMJD4_DROME	No assigned EC number	0.4050	0.6973	0.7482	yes	N/A
Q4WPU8	DPH3_ASPFU	No assigned EC number	0.5205	0.1535	0.6603	yes	N/A
Q8BFT6	JMJD4_MOUSE	No assigned EC number	0.4466	0.7061	0.7540	yes	N/A
Q6FXS6	DPH3_CANGA	No assigned EC number	0.5454	0.1184	0.6585	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	456
pfam05207	55	pfam05207, zf-CSL, CSL zinc finger	3e-24
pfam13621	247	pfam13621, Cupin_8, Cupin-like domain	6e-22
COG5216	67	COG5216, COG5216, Uncharacterized conserved protei	9e-22
pfam02373	114	pfam02373, JmjC, JmjC domain, hydroxylase	8e-14
smart00558	58	smart00558, JmjC, A domain family that is part of	0.003

>gnl|CDD|191232 pfam05207, zf-CSL, CSL zinc finger

 Score = 94.6 bits (236), Expect = 3e-24
 Identities = 31/51 (60%), Positives = 42/51 (82%)

Query: 6  DEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          DE+E+EDFE+DE++ ++YYPC CGD F+IT+E L+ GE V  CP+CSL IK
Sbjct: 1  DEVELEDFEFDEEEGSFYYPCRCGDEFEITEEDLEEGEVVVQCPSCSLWIK 51

This is a zinc binding motif which contains four cysteine residues which chelate zinc. This domain is often found associated with a pfam00226 domain. This domain is named after the conserved motif of the final cysteine. Length = 55

>gnl|CDD|222269 pfam13621, Cupin_8, Cupin-like domain

 Score = 93.9 bits (234), Expect = 6e-22
 Identities = 56/256 (21%), Positives = 100/256 (39%), Gaps = 42/256 (16%)

Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVA----------- 149
           F  +++K KP +LK    +W +    V+      +YL   YGD+EV V            
Sbjct: 5   FREYVAKRKPVVLKGAAKDWPA----VKKWTDALDYLKEKYGDVEVSVEVTPPGRADRFF 60

Query: 150 -NCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVP 208
            N +    N  E+  M  K++         G   ET P  YL+  +   +F       + 
Sbjct: 61  YNDDLSGVNFKEER-MPFKDF---LDLLRAGSDQETPPYLYLQSSNLDSEF-----PGLR 111

Query: 209 NVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLA 268
                    E + +  +  +    +++G   T T LH D + +      + GRK++ L  
Sbjct: 112 EDNDLPLAPEAFGKLPQAVN----LWIGNGGTTTSLHYDAYEN--LYCVVSGRKRFTLFP 165

Query: 269 PG-------NEKYFKDSMGNLISDMRSVDWSTLPRDT---VIIVEQEAGDSIFVPSGWHH 318
           P                    + D  + D    PR      ++ E E GD++++P+GW H
Sbjct: 166 PSQVPNLYPGPLDRTGGQPFSLVDPDNPDLEKFPRFKDAKALVAELEPGDALYIPAGWWH 225

Query: 319 QVTNLEH-TISINHNW 333
            V +L+   I++N+ +
Sbjct: 226 HVRSLDDFNIAVNYWF 241

This cupin like domain shares similarity to the JmjC domain. Length = 247

>gnl|CDD|227541 COG5216, COG5216, Uncharacterized conserved protein [Function unknown]

 Score = 88.0 bits (218), Expect = 9e-22
 Identities = 34/55 (61%), Positives = 44/55 (80%), Gaps = 1/55 (1%)

Query: 1  MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLII 55
          MS Y DEIEIEDF +  +++T+ YPCPCGDRF+I+ E L+ GE VA CP+CSLI+
Sbjct: 1  MSFY-DEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLRNGEVVARCPSCSLIV 54

Length = 67

>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase

 Score = 67.3 bits (165), Expect = 8e-14
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 232 FVYMGPKETWTPLHADVFHSYS-WSVNICGRKQWLLLAPGNEKYFKDSMG--NLISDMRS 288
           ++YMG   + TP H +    YS   ++  G K W ++     + F+  +   N       
Sbjct: 1   WLYMGMPGSTTPWHIEDQGLYSINYLHFGGPKVWYIIPSEYAEKFEKVLSKHNGGEQPDL 60

Query: 289 VDWST--LPRDT-------VIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNW 333
           +      +           V    Q+ G+ +F   GW+HQV NL   I+   N+
Sbjct: 61  LLHLNTIISPKQLLENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114

>gnl|CDD|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 200 KTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSW 254
           +  ++ ++P       L     E +   D   ++YMG   + TP H D +   ++
Sbjct: 1   QLWNLAKLPF---KLNLLSDLPEDIPGPDVGPYLYMGMAGSTTPWHIDDYDLVNY 52

Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press). Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
KOG2131|consensus	427		100.0
KOG2130|consensus	407		100.0
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	100.0
KOG2132|consensus	355		99.94
KOG2508|consensus	437		99.9
KOG2923|consensus	67		99.88
PF05207	55	zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc	99.83
COG5216	67	Uncharacterized conserved protein [Function unknow	99.78
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	99.61
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	99.6
COG2850	383	Uncharacterized conserved protein [Function unknow	99.59
KOG1633|consensus	776		99.3
KOG1356|consensus	889		99.0
KOG3706|consensus	629		98.8
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	97.39
smart00558	57	JmjC A domain family that is part of the cupin met	96.8
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	96.52
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	95.95
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	95.83
PRK04190	191	glucose-6-phosphate isomerase; Provisional	95.61
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	95.59
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	95.55
KOG2132|consensus	355		95.52
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	95.05
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	94.61
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	93.95
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	93.41
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	93.06
COG1917	131	Uncharacterized conserved protein, contains double	92.92
smart00835	146	Cupin_1 Cupin. This family represents the conserve	92.67
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	91.59
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	91.34
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	91.0
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	90.64
KOG0958|consensus	690		90.29
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	90.19
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	89.94
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	89.56
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	89.5
PRK13290	125	ectC L-ectoine synthase; Reviewed	88.78
COG5285	299	Protein involved in biosynthesis of mitomycin anti	88.59
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	87.55
PF05180	66	zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc	87.02
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	85.85
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	85.39
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	85.26
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	84.66
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	84.11
PLN00212	493	glutelin; Provisional	83.14
TIGR02466	201	conserved hypothetical protein. This family consis	82.84
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	82.43
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	82.35
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	82.28
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	80.82
KOG3277|consensus	165		80.8

>KOG2131|consensus

Probab=100.00  E-value=2.1e-61  Score=468.78  Aligned_cols=340  Identities=35%  Similarity=0.597  Sum_probs=279.3

Q ss_pred             cCCCCceeeCC-CCCHHHHHHhhcCCCCcEEEecCCCccccc----ccccc-CCC-------------------------
Q psy12281         83 ALPQVDYNIDP-SHIYPYCFNNFLSKNKPFILKSCVNEWNSS----LHWVQ-NKQ-------------------------  131 (456)
Q Consensus        83 ~~p~~I~ri~~-~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa~----~~Wt~-~~~-------------------------  131 (456)
                      +.+..|+|+.. .+++.+|..+|...+.||+|.+...+|+++    ..|.. .+.                         
T Consensus        25 qlr~~v~r~~g~~~d~~~~a~~~~~k~~~v~is~v~~d~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~~~~v~~~  104 (427)
T KOG2131|consen   25 QLRPCVLRLIGPTADYGDFAERDTHKRPGVLISYVLEDWPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNGDKNVFLC  104 (427)
T ss_pred             hhhhhhhhhcccccCcccchhhhcccCCCccccccccCcccccCCCcchhhhccCcchhHHHHHHhHHHHhcCCcccccc
Confidence            45577888865 699999999999999999999988999998    44433 222                         


Q ss_pred             -----CChhHHHHHhCCceEEEEecCcccccCCceEEeeHHHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCCcccc
Q psy12281        132 -----PNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYR  206 (456)
Q Consensus       132 -----~~~d~L~~~~Gd~~V~V~~~~~~~y~~~~~~~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l~~y~  206 (456)
                           ++.++|.+.||+..|+++.|+..++.+     |+++++.-+.+......  ...+++|++|||+...+|....|.
T Consensus       105 ~~s~f~~~~~Le~ny~d~~v~~a~~~e~e~~~-----l~lad~~~~e~~~~~~~--~q~p~ly~kDwHL~~~~d~~~~~~  177 (427)
T KOG2131|consen  105 DLSLFPDYEYLERNYGDFVVPVANCNEKERYS-----LKLADWEFREEQVQLAC--PQAPSLYGKDWHLYRFLDNDFPYW  177 (427)
T ss_pred             ccccCccHHHHHhhhhhcchhhccccchhhhh-----hhhccchhHHHhHhhhc--CCCccccccchheeeecCcccccc
Confidence                 355555556666666665555433222     44444444333322111  235689999999999999888999


Q ss_pred             cCcccCcchhhHhhhhhccCCCccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccC
Q psy12281        207 VPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDM  286 (456)
Q Consensus       207 ~P~~f~~D~ln~~~~~~~~~~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~  286 (456)
                      +|.+|.+||+|+++....  .++|||+||||+|||||+|.|+++++||+++|||+|+|+|+||+++..|+++.|++|+++
T Consensus       178 ~pd~F~~dwlne~~i~~~--~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~  255 (427)
T KOG2131|consen  178 TPDLFAKDWLNEFVIDGE--SDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPS  255 (427)
T ss_pred             cchhhhhcccchhhccCC--CCceeEEEeccCCCCCccchhhhcCCcceeeeecceeEEEeChHHhhhhhhhccCcCCcc
Confidence            999999999999998766  899999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHHhhhhcccchhH
Q psy12281        287 RSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDW  366 (456)
Q Consensus       287 ~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~~~~~~l~~~~~~~~~~~~~~~~~~~~  366 (456)
                      ..+.+..| +.+.++++|+|||+||||+||+|||.||++||||||||+|++||.+||.+|++++.++.++|+| ..|++|
T Consensus       256 ~~~~ld~~-~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~~Lk~~y~a~~esisd-d~md~~  333 (427)
T KOG2131|consen  256 WITKLDLF-RGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWDALKEDYPALAESISD-DLMDDF  333 (427)
T ss_pred             cccccccc-ccchhhhhccCCceeeccCccccccccccceeeecccccccccHHHHHHHHHhhhhhhhhhhhh-hccccc
Confidence            88766543 3667999999999999999999999999999999999999999999999999999999999999 669999


Q ss_pred             HHHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhhcccCCccccccccccCccchhccHHHHHHHHHHhhcCCccch
Q psy12281        367 TSHCQLMLQVSFGINFRQFFDMLKFICQKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLKLCAQHEDWDL  441 (456)
Q Consensus       367 ~~~~~~~l~~~~g~~~~~f~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (456)
                      +.+||.+|++++|||+.+|+.|+++++  ++..-....+      ..++...+++|+..+-++|..|+.+.+++.
T Consensus       334 ~~~cq~~lra~~gin~~ef~~f~~~~a--~l~h~~~~~~------a~l~~s~~~~~~~~q~evl~~l~~~~~~t~  400 (427)
T KOG2131|consen  334 PLECQFSLRATEGINANEFIYFPDFWA--MLKHATLNRD------ASLFISTFLSDWPIQPEVLPPLSWEYSITK  400 (427)
T ss_pred             hhhhhhhhhhhccccccceEeehHHHH--HHHHHHhccc------hhhhHHhhhcccccchhhhcceeecCceec
Confidence            999999999999999999999999998  3333222222      235555567788888888999998888764

>KOG2130|consensus

Probab=100.00  E-value=2e-48  Score=371.47  Aligned_cols=242  Identities=26%  Similarity=0.487  Sum_probs=205.4

Q ss_pred             CCceeeCC-CCCHHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCcccccCCceEEe
Q psy12281         86 QVDYNIDP-SHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNM  164 (456)
Q Consensus        86 ~~I~ri~~-~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~~~y~~~~~~~m  164 (456)
                      ++++|++. ++|.++|.++|..+++||||+|++++|||..+||      +++|.++||++++.+...+     .+...+|
T Consensus        52 dn~~r~~~~~isveeF~~~ferp~kPVll~g~~DgW~A~ekWT------~drLskkyrnq~Fkcged~-----~gnsv~M  120 (407)
T KOG2130|consen   52 DNGNRERRRNISVEEFIERFERPYKPVLLSGLTDGWPASEKWT------LDRLSKKYRNQKFKCGEDN-----NGNSVKM  120 (407)
T ss_pred             ccchhhhhcCCCHHHHHHHhcccCCceEeeccccCCchhhhhh------HHHHHHHhcCccccccccC-----CCcceee
Confidence            56666655 9999999999999999999999999999999997      6999999999999886432     3447899


Q ss_pred             eHHHHHHHHHhcccCCCCCCCCeeeeeccccccCCC--CC-cccccCcccCcchhhHhhhhhccCCCccceeeeCCCCCc
Q psy12281        165 TLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFK--TE-DIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETW  241 (456)
Q Consensus       165 ~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p--~l-~~y~~P~~f~~D~ln~~~~~~~~~~~~~~~l~iG~~gs~  241 (456)
                      +|+.|++|++...      ++.++|++|-.|.++.|  .| .+|.+|.||.+||+. |++...  +++|||+.|||++|+
T Consensus       121 KmkyY~~Ym~~~R------ddsPLYiFDssFgE~~~~rkLl~dY~VPk~F~dDlF~-y~g~e~--RPpyRWfvmGParSG  191 (407)
T KOG2130|consen  121 KMKYYIEYMKSTR------DDSPLYIFDSSFGEHAPRRKLLEDYSVPKYFRDDLFQ-YLGEER--RPPYRWFVMGPARSG  191 (407)
T ss_pred             eHHHHHHHHhccc------cCCCeEEecchhhcccchhhhhhhcCcchhhhHHHHH-hcCccc--CCCceeEEecCCCCC
Confidence            9999999999765      47899999999999888  55 699999999999985 665554  899999999999999


Q ss_pred             ccccccccCccceeEEEEeEEEEEEeCCCCCcccccC----CCCccccCCCc--------ccCCCCC-CceEEEEEcCCC
Q psy12281        242 TPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDS----MGNLISDMRSV--------DWSTLPR-DTVIIVEQEAGD  308 (456)
Q Consensus       242 T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~----~g~~p~d~~~p--------d~~~fp~-~~~~~~~l~pGD  308 (456)
                      |.+|+|+.++.+|+++|+|+|||.||||+..+.+-..    .|..|..+..+        .+..+|. .++++|+|.|||
T Consensus       192 tsiHIDPlgTSAWNtll~GhKrW~LfPp~~p~~lvkv~~~e~g~~~de~itwf~~~y~rt~~Pswp~E~kPIEc~q~pGE  271 (407)
T KOG2130|consen  192 TSIHIDPLGTSAWNTLLQGHKRWVLFPPGTPPELVKVTVDEGGKQPDEIITWFSTIYPRTQLPSWPDEYKPIECLQKPGE  271 (407)
T ss_pred             ceeEECCcchHHHHHHhhccceeEEcCCCCCCCceeecccccCCCCcceechhhhccccccCCCCccccCCceeeecCCc
Confidence            9999999999999999999999999999997755421    22333222111        0111233 799999999999


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEeecCCCCCHHHHHHHHH
Q psy12281        309 SIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMV  347 (456)
Q Consensus       309 ~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~~~~~~l~  347 (456)
                      ++|||+||||-|.|+++||+|++||++..|+..||+.+.
T Consensus       272 t~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~Vw~ktv  310 (407)
T KOG2130|consen  272 TMFVPSGWWHVVLNLEPTIAITQNFASKENFPFVWHKTV  310 (407)
T ss_pred             eEEecCCeEEEEeccCceeeeeeccccccCCceeeeccc
Confidence            999999999999999999999999999999999998763

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=100.00  E-value=1.3e-40  Score=321.77  Aligned_cols=225  Identities=27%  Similarity=0.569  Sum_probs=161.7

Q ss_pred             HHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCc---cccc--------CCceEEee
Q psy12281         97 YPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNS---YYFN--------AHEKTNMT  165 (456)
Q Consensus        97 ~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~---~~y~--------~~~~~~m~  165 (456)
                      |++|+++|+.+++||||+|++.+|+|+++|+. ....++||++++|+..|.+.....   ..+.        ......|+
T Consensus         1 p~eF~~~~~~~~~PvVi~g~~~~w~a~~~W~~-~~~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (251)
T PF13621_consen    1 PEEFFERYVKPNKPVVIRGAAADWPAFQKWTD-DEYLLDYLKEKYGDVPVPVRDSPNGISDSFGYNDDRKFVNFERERMP   79 (251)
T ss_dssp             -HHHHHHTCCTT--EEEESSSTTCCHHHH-S------HHHHHHHHTSSEEEEEEEST--SSBTS-B-GCCCTCEEEEEEE
T ss_pred             CHHHHHHHhCCCCCEEEeCCccCCchhhhccc-hhHHHHHHHHHcCCeEEEEEecCCcccccccccccccccCCeeEECc
Confidence            68999999999999999999999999999973 223479999999999999975431   1111        23468999


Q ss_pred             HHHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCCccc-ccCcccCcchhhHhhhhhccCCCccceeeeCCCCCcccc
Q psy12281        166 LKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIY-RVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPL  244 (456)
Q Consensus       166 l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l~~y-~~P~~f~~D~ln~~~~~~~~~~~~~~~l~iG~~gs~T~l  244 (456)
                      |++|++.+.....   ......+|+.++.+...+|.+... .+|  +..++++    .    ......+|||++|+.|++
T Consensus        80 ~~~f~~~~~~~~~---~~~~~~~y~~~~~~~~~~~~l~~~~~~~--~~~~~~~----~----~~~~~~l~ig~~gs~t~l  146 (251)
T PF13621_consen   80 FRDFLDRLRANRD---QRDKPYYYLQNWNLFEDFPELREDNDLP--FPPELFG----K----EPQSSNLWIGPPGSFTPL  146 (251)
T ss_dssp             HHHHHHHHHHSCH---STSSSEEEEEEETHHHHSHHHHCCS-CH--HHHCHSC----C----HCCEEEEEEE-TTEEEEE
T ss_pred             HHHHHHHHHhccc---ccCCceEEEecCchHHHhhhhhhccccc--cchhhcc----c----CccccEEEEeCCCceeee
Confidence            9999999987653   123468999999888888877422 222  2222221    1    124567999999999999


Q ss_pred             cccccCccceeEEEEeEEEEEEeCCCCCcccccCC------CCccccCCCcccCCCCC---CceEEEEEcCCCEEEeCCC
Q psy12281        245 HADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSM------GNLISDMRSVDWSTLPR---DTVIIVEQEAGDSIFVPSG  315 (456)
Q Consensus       245 H~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~------g~~p~d~~~pd~~~fp~---~~~~~~~l~pGD~LfIPsg  315 (456)
                      |+|..+  +|++||.|+|+|+||||.+...||+..      ....+|+.+++..+||+   +++++|+|+|||+||||+|
T Consensus       147 H~D~~~--n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~pGD~LfiP~g  224 (251)
T PF13621_consen  147 HYDPSH--NLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEPGDVLFIPPG  224 (251)
T ss_dssp             EE-SSE--EEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEETT-EEEE-TT
T ss_pred             eECchh--hhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECCCeEEEECCC
Confidence            999965  559999999999999999999999764      11247888888888875   7899999999999999999


Q ss_pred             CeEEEEeC--CC-cEEEEeecCCCC
Q psy12281        316 WHHQVTNL--EH-TISINHNWINGT  337 (456)
Q Consensus       316 W~H~V~nl--~~-sIsvn~~~~~~~  337 (456)
                      |||+|+|+  ++ |||||+||....
T Consensus       225 WwH~V~~~~~~~~sisvn~w~~~~~  249 (251)
T PF13621_consen  225 WWHQVENLSDDDLSISVNYWFRTPF  249 (251)
T ss_dssp             -EEEEEESTTSSCEEEEEEEEESS-
T ss_pred             CeEEEEEcCCCCeEEEEEEEecccc
Confidence            99999999  77 999999998753

...

>KOG2132|consensus

Probab=99.94  E-value=4.3e-28  Score=234.54  Aligned_cols=214  Identities=21%  Similarity=0.320  Sum_probs=178.1

Q ss_pred             CCCHHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCcccccCCceEEeeHHHHHHHH
Q psy12281         94 SHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYW  173 (456)
Q Consensus        94 ~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~~~y~~~~~~~m~l~efl~~~  173 (456)
                      .++..+|+.+++.+++|++++|...+|||.++|.      ++||.+..|.+.|+|.-..+..-......-|+..+|+.+.
T Consensus       134 ~~~l~~~l~d~~~~~~p~~~l~~~~hwpa~~kw~------l~~l~~va~~rTvpvEvg~~y~~~~w~q~l~t~~~g~~R~  207 (355)
T KOG2132|consen  134 RLSLQEFLNDTVGRGTPVILLGFNWHWPAIQKWS------LGYLQQVAGNRTVPVEVGSTYADEDWSQNLMTQIKGIKRC  207 (355)
T ss_pred             chHHHHHHHHhhcCCCceEEecccccchHhhhcc------hhHHHhcccceeeeeecccccchhHHHhhhHHHhhhhhhh
Confidence            6888999999999999999999999999999994      8999999999999997544322222345678888888877


Q ss_pred             HhcccCCCCCCCCeeeeeccccccCCCCCc-ccccCcccCcchhhHhhhhhccCCCccceeeeCCCCCcccccccccCcc
Q psy12281        174 QNKIDGKLSETEPLYYLKDWHFTRDFKTED-IYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSY  252 (456)
Q Consensus       174 ~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l~-~y~~P~~f~~D~ln~~~~~~~~~~~~~~~l~iG~~gs~T~lH~D~~~~~  252 (456)
                      ....      .++++|+.+.++....|+++ ++..|.+-..--++      .  +...+..|+||+|+.+|+|.|+.+|+
T Consensus       208 ~~~~------p~~~~YlAqh~lfdqi~elk~Di~iPDyc~~~~f~------~--~~v~~~~w~GpaGtV~pih~dp~hNi  273 (355)
T KOG2132|consen  208 ILFE------PRECLYLAQHHLFDQIPELKFDISIPDYCSFPNFE------N--EVVDINAWIGPAGTVLPIHMDPWHNI  273 (355)
T ss_pred             hcCC------ccccchhhhhhhhccchhhhhccCCCceeecCCCC------c--cccceeEEeccCCceeccccccccce
Confidence            6543      24688999999999999884 77778753321111      0  23557899999999999999999999


Q ss_pred             ceeEEEEeEEEEEEeCCCCCcccccCCCCc----cccCCCcccCCCCC---CceEEEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        253 SWSVNICGRKQWLLLAPGNEKYFKDSMGNL----ISDMRSVDWSTLPR---DTVIIVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       253 sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~----p~d~~~pd~~~fp~---~~~~~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                        .+||.|+|+|+|+||.....||+..+.+    .+|+.+||+..||+   ++.+.++++|||+||||.-|||.|++++.
T Consensus       274 --~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~d~  351 (355)
T KOG2132|consen  274 --LSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPKFAKARFLDCLLEPGEALFIPPKWWHYVRSLDK  351 (355)
T ss_pred             --eeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhHHHHHHHHHHhcCCchhccccHHHhhhhhhccc
Confidence              9999999999999999999999875542    47899999999986   89999999999999999999999999998


Q ss_pred             cEEE
Q psy12281        326 TISI  329 (456)
Q Consensus       326 sIsv  329 (456)
                      ++|+
T Consensus       352 s~s~  355 (355)
T KOG2132|consen  352 SFSV  355 (355)
T ss_pred             cccC
Confidence            7764

>KOG2508|consensus

Probab=99.90  E-value=1.7e-23  Score=204.01  Aligned_cols=234  Identities=21%  Similarity=0.362  Sum_probs=169.2

Q ss_pred             CCCCceeeCCCCCHHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCcccccC-----
Q psy12281         84 LPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNA-----  158 (456)
Q Consensus        84 ~p~~I~ri~~~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~~~y~~-----  158 (456)
                      +|..|.+.|..+|+.+|.++|+.+|+||||+.++.+|||.++|+.     .+||....||..|.|+-.+. .|.+     
T Consensus        20 vp~~v~~lD~~Ptpl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~-----p~Yl~~algd~vvsvaitPn-gyadgav~~   93 (437)
T KOG2508|consen   20 VPVLVNLLDLTPTPLDFYRKFVSTNTPVIIRKALPHWPALKLWSQ-----PDYLLSALGDIVVSVAITPN-GYADGAVMS   93 (437)
T ss_pred             cccccccccCCCchHHHHHhhhcCCCcEEEecccccCchhhccCc-----hHHHHHhccCeEEEEEeCCC-Ccccccccc
Confidence            456788998889999999999999999999999999999999984     78999999999998873221 1111     


Q ss_pred             -------CceEEeeHHHHHHHHHhcccCCCCCCCCeeeeecc--ccccCCCCCc-ccccCcccCcchhhHhhhhhccCCC
Q psy12281        159 -------HEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDW--HFTRDFKTED-IYRVPNVFSSDWLNEYYSEHLEHKD  228 (456)
Q Consensus       159 -------~~~~~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~--~~~~~~p~l~-~y~~P~~f~~D~ln~~~~~~~~~~~  228 (456)
                             ....+|++++.+..+..+.+     ....+|+.+.  .+..++|.+. +-..-.   -+|-.+...    ..+
T Consensus        94 g~e~f~~pae~KlklsevL~vl~~~~~-----~~~Vly~qkQ~snl~~elp~la~Dl~~~d---~~wa~eafg----k~P  161 (437)
T KOG2508|consen   94 GNEMFIKPAEQKLKLSEVLYVLTQYDE-----SNEVLYGQKQNSNLVKELPPLATDLLLTD---FSWAPEAFG----KVP  161 (437)
T ss_pred             CcceeechhhhhccchhhheehhcccC-----CCceeehhhhccccccccccccccccccc---ccccHHHhC----CCh
Confidence                   11346777777776665532     3578898764  3455666542 111100   023222221    256


Q ss_pred             ccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccC---------C---CCccc------------
Q psy12281        229 DYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDS---------M---GNLIS------------  284 (456)
Q Consensus       229 ~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~---------~---g~~p~------------  284 (456)
                      +..++|||...++|.||.|+++|+  +|+|.|.|+|+|.||++.+.|+-.         .   |.+-.            
T Consensus       162 davNlWiG~~~avTSlHkDhyENl--YaViSGeKhFvlipP~d~~~lp~eiyp~g~ysy~~e~g~fk~e~~dEe~~~~a~  239 (437)
T KOG2508|consen  162 DAVNLWIGKSEAVTSLHKDHYENL--YAVISGEKHFVLIPPDDANQLPLEIYPNGLYSYEGEDGPFKSEGLDEEDAAIAK  239 (437)
T ss_pred             hheeeeecccccccccccccccce--EEEEeccceEEEeCcccccccceeecCCcceeeecCCCceeecccchhhhhhcc
Confidence            788999999999999999999999  999999999999999998765421         1   11100            


Q ss_pred             -----cCC-Cc-----ccCCCC---C-CceEEEEEcCCCEEEeCCCCeEEEEeC----CCcEEEEeecCCCC
Q psy12281        285 -----DMR-SV-----DWSTLP---R-DTVIIVEQEAGDSIFVPSGWHHQVTNL----EHTISINHNWINGT  337 (456)
Q Consensus       285 -----d~~-~p-----d~~~fp---~-~~~~~~~l~pGD~LfIPsgW~H~V~nl----~~sIsvn~~~~~~~  337 (456)
                           |.. +|     +..+||   . .++..+.+.+|+++|.|..|.|+|-..    +.+|++|.|+-...
T Consensus       240 ~~~svd~~~s~~~~a~~~~k~~l~~~~~k~~~~rv~a~~i~~lp~~w~h~~sq~~gd~~~~Iavn~~~d~~~  311 (437)
T KOG2508|consen  240 TWFSVDPIGSPKELAVPQEKIPLLEAEYKPEMDRVLAGQILYLPEDWFHHVSQVGGDPESDIAVNEWYDIEA  311 (437)
T ss_pred             eeeeecccCCHHHhccchhhCccccccccceeeeeeccccccChhhhhhhccccCCCccceeEEeeeccccc
Confidence                 100 11     122233   3 788899999999999999999999888    45999999987664

>KOG2923|consensus

Probab=99.88  E-value=5.4e-23  Score=151.43  Aligned_cols=61  Identities=66%  Similarity=1.227  Sum_probs=58.1

Q ss_pred             eeeeEEeCCCccccCCCceEEEecCCCCcEEeehhhhhcCCcEEeCCCCcceEEEeeeehh
Q psy12281          3 VYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSV   63 (456)
Q Consensus         3 ~~~~~~~l~d~~~~~~~~~~~~~CrCg~~f~i~~~~l~~~~~~~~C~~CSl~i~~~~~~~~   63 (456)
                      ++||+|.|+||+|+++++.|+|||||||.|+|++++|+.|+.+++|+||||.|+|.|+..+
T Consensus         2 ~~ydeVeiedfe~~~e~~~y~yPCpCGDrf~It~edL~~ge~Va~CpsCSL~I~ViYd~ed   62 (67)
T KOG2923|consen    2 SFYDEVEIEDFEFDEENQTYYYPCPCGDRFQITLEDLENGEDVARCPSCSLIIRVIYDKED   62 (67)
T ss_pred             cccceEEeecceeccCCCeEEcCCCCCCeeeecHHHHhCCCeeecCCCceEEEEEEeCHHH
Confidence            5799999999999999999999999999999999999999999999999999999997653

>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.83  E-value=7.9e-21  Score=140.97  Aligned_cols=55  Identities=42%  Similarity=0.970  Sum_probs=49.3

Q ss_pred             eEEeCCCccccCCCceEEEecCCCCcEEeehhhhhcCCcEEeCCCCcceEEEeee
Q psy12281          6 DEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVI   60 (456)
Q Consensus         6 ~~~~l~d~~~~~~~~~~~~~CrCg~~f~i~~~~l~~~~~~~~C~~CSl~i~~~~~   60 (456)
                      |+|+|+||+++++++.|+|+|||||.|.|++++|++++.+|+|++|||+|+|.|+
T Consensus         1 dev~l~d~~~~~~~~~~~y~CRCG~~f~i~e~~l~~~~~iv~C~sCSL~I~V~~~   55 (55)
T PF05207_consen    1 DEVSLDDMEFDEEEGVYSYPCRCGGEFEISEEDLEEGEVIVQCDSCSLWIRVNYD   55 (55)
T ss_dssp             -EEETTTSEEETTTTEEEEEETTSSEEEEEHHHHHCT--EEEETTTTEEEEEE--
T ss_pred             CeEEhhhceecCCCCEEEEcCCCCCEEEEcchhccCcCEEEECCCCccEEEEEeC
Confidence            6899999999999999999999999999999999999999999999999999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.

>COG5216 Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=1.8e-19  Score=130.74  Aligned_cols=58  Identities=53%  Similarity=1.083  Sum_probs=55.8

Q ss_pred             eeeEEeCCCccccCCCceEEEecCCCCcEEeehhhhhcCCcEEeCCCCcceEEEeeee
Q psy12281          4 YHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIK   61 (456)
Q Consensus         4 ~~~~~~l~d~~~~~~~~~~~~~CrCg~~f~i~~~~l~~~~~~~~C~~CSl~i~~~~~~   61 (456)
                      +||+|.++||+++.++..|+||||||+.|+|+.++|.+|+.++.|+||||.|.|.|+.
T Consensus         3 fYDEieiedftf~~e~~~ftyPCPCGDRFeIsLeDl~~GE~VArCPSCSLiv~vvyd~   60 (67)
T COG5216           3 FYDEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLRNGEVVARCPSCSLIVCVVYDA   60 (67)
T ss_pred             ccceeEeeeeEEcCCCceEEecCCCCCEeEEEHHHhhCCceEEEcCCceEEEEEEecH
Confidence            5799999999999999999999999999999999999999999999999999999954

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=99.61  E-value=1.7e-15  Score=152.72  Aligned_cols=102  Identities=24%  Similarity=0.382  Sum_probs=69.6

Q ss_pred             CccceeeeCCCC-CcccccccccCccceeEEEEeEEEEEEeCCCCCc-ccccCCCCccccCCCcccCCCC-CCceEEEEE
Q psy12281        228 DDYRFVYMGPKE-TWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEK-YFKDSMGNLISDMRSVDWSTLP-RDTVIIVEQ  304 (456)
Q Consensus       228 ~~~~~l~iG~~g-s~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~-~Ly~~~g~~p~d~~~pd~~~fp-~~~~~~~~l  304 (456)
                      ....++|++|+| .+.+.|+|..+++  .+|+.|+|+|.|++|.... ..+.          ..++.... ..+..+++|
T Consensus       113 ~~~~n~Y~tp~g~~g~~~H~D~~dvf--vlQ~~G~K~W~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~L  180 (319)
T PF08007_consen  113 PVGANAYLTPPGSQGFGPHYDDHDVF--VLQLEGRKRWRLYPPPDEPAPLYS----------DQPFKQLEEFEPVEEVVL  180 (319)
T ss_dssp             -EEEEEEEETSSBEESECEE-SSEEE--EEEEES-EEEEEE-SCCCTTTSSC----------E--TTTCG--STSEEEEE
T ss_pred             ccceEEEecCCCCCCccCEECCcccE--EEECCceeEEEECCCCcccccccC----------CCCccccccCceeEEEEE
Confidence            456789999998 5799999999999  9999999999999844322 1111          01111111 146779999


Q ss_pred             cCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCHHH
Q psy12281        305 EAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDH  341 (456)
Q Consensus       305 ~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~~  341 (456)
                      +|||+||||+||||++.+.+.|++++..+...+..+.
T Consensus       181 ~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl  217 (319)
T PF08007_consen  181 EPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADL  217 (319)
T ss_dssp             -TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHH
T ss_pred             CCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhH
Confidence            9999999999999999999999999999777654443

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=99.60  E-value=7.2e-16  Score=131.56  Aligned_cols=102  Identities=26%  Similarity=0.377  Sum_probs=70.0

Q ss_pred             eeeeCCCCCcccccccccCccc-eeEEEEeEEEEEEeCCCCCcccccCCCCc-----cccCC------CcccCCCCCCce
Q psy12281        232 FVYMGPKETWTPLHADVFHSYS-WSVNICGRKQWLLLAPGNEKYFKDSMGNL-----ISDMR------SVDWSTLPRDTV  299 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~s-W~~~i~G~Krw~L~pP~~~~~Ly~~~g~~-----p~d~~------~pd~~~fp~~~~  299 (456)
                      +++||.++|+|++|.|.....+ |+....|.|.|.++||.....+.......     |....      .|+.-.=...+.
T Consensus         1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~gi~~   80 (114)
T PF02373_consen    1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSKESQNCPQFLDHKNIFVSPEQLKKAGIPV   80 (114)
T ss_dssp             EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHHHHHHSTTGGCTGGEEEGHHHHHHTTS--
T ss_pred             CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhcccccccccccccccccceeeeeccCccc
Confidence            5899999999999999999984 88888999999999999877655321110     00000      010000013789


Q ss_pred             EEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeec
Q psy12281        300 IIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNW  333 (456)
Q Consensus       300 ~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~  333 (456)
                      ++++|+|||+||||+||||+|.|+++||+++.||
T Consensus        81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf  114 (114)
T PF02373_consen   81 YRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF  114 (114)
T ss_dssp             EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred             ccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence            9999999999999999999999999999999987

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=6.3e-15  Score=145.92  Aligned_cols=262  Identities=13%  Similarity=0.122  Sum_probs=143.0

Q ss_pred             CCCCHHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCcccccCCceEEeeHHHHHHH
Q psy12281         93 PSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIY  172 (456)
Q Consensus        93 ~~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~~~y~~~~~~~m~l~efl~~  172 (456)
                      ..+|+++|+++|+ ..||+|||+++.+--. ..       .++.|++-.-...|...--....-+......-+|.++=-+
T Consensus        13 ~glt~~~FL~~YW-qkKPlliR~a~p~~~~-p~-------~pdeLa~La~~edV~srLV~~~~~~~w~~~~gPfe~~d~~   83 (383)
T COG2850          13 LGLTPEDFLRDYW-QKKPLLIRNAFPEFHS-PL-------SPDELAGLAQEEDVTSRLVSHESDGTWQVSHGPFEEEDFL   83 (383)
T ss_pred             CCCCHHHHHHHHh-hhcchHHhhccccccc-CC-------CHHHHHHHhccccccchhhhhccCCceeEeeCccchhccc
Confidence            4799999999999 6799999998854211 12       3466776665544432100000000111122222222111


Q ss_pred             HHhcccCCCCCCCCeeeeeccccccCCCCCcccccCcccCcchhhHhhhhhccCCCccceeeeCCCCCcccccccccCcc
Q psy12281        173 WQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSY  252 (456)
Q Consensus       173 ~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l~~y~~P~~f~~D~ln~~~~~~~~~~~~~~~l~iG~~gs~T~lH~D~~~~~  252 (456)
                       .         ....+-|.-.......|++...--|--|-.+|           +-+...|...+.|.+...|+|.++++
T Consensus        84 -~---------~p~~wsllvq~vd~w~p~v~~l~~~FrflP~w-----------r~ddiMIS~a~~GGgvg~H~D~YDVf  142 (383)
T COG2850          84 -G---------LPRNWSLLVQAVDHWHPEVAALMEPFRFLPDW-----------RIDDIMISFAAPGGGVGPHFDQYDVF  142 (383)
T ss_pred             -c---------CCcCceEEEehhhhcCHHHHHHHHHhccCccc-----------cccceEEEEecCCCccCccccchhee
Confidence             0         00112222111112223322111111122233           33445566666677799999999999


Q ss_pred             ceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEee
Q psy12281        253 SWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN  332 (456)
Q Consensus       253 sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~  332 (456)
                        ..|..|+|||.+-.+.....+++..-.   .+..      |-...++.+++|||+||||+||||.-...++|+..+..
T Consensus       143 --liQg~G~RRW~v~~~~~~~~~~~~~d~---~~~~------~f~~~~d~vlepGDiLYiPp~~~H~gvae~dc~tySvG  211 (383)
T COG2850         143 --LIQGQGRRRWRVGKKCNMSTLCPHPDL---LILA------PFEPDIDEVLEPGDILYIPPGFPHYGVAEDDCMTYSVG  211 (383)
T ss_pred             --EEeecccceeecCCcccccCcCCCcch---hhcC------CCCchhhhhcCCCceeecCCCCCcCCcccccccceeee
Confidence              999999999999877665544431100   0000      11455678999999999999999999999999999998


Q ss_pred             cCCCCCHHHHHHHHHHHHH----HHHHhhhhccc-------chhHHHHHHHHHhhhcCCCHHHHHHHHH-HHHHhh
Q psy12281        333 WINGTNIDHVYHEMVSHLE----AVKKEIDDCKD-------MDDWTSHCQLMLQVSFGINFRQFFDMLK-FICQKR  396 (456)
Q Consensus       333 ~~~~~nl~~~~~~l~~~~~----~~~~~~~~~~~-------~~~~~~~~~~~l~~~~g~~~~~f~~~l~-~~~~~r  396 (456)
                      +..++..+.+=+++..-..    ..+-.-.++..       ...+-+....||.+. -++++.|..+-. ++++.|
T Consensus       212 ~r~Pn~~ell~~~~~~~~~~~~~~~rysd~~~~~~~~p~~~~~~~~d~l~~~l~~~-~~~~e~f~~~Fg~~~~t~~  286 (383)
T COG2850         212 FRAPNTRELLSGFLDFFLQRESDELRYSDADLPPRGHPGELLPAMVDALAAMLLDL-LNQPEAFDNWFGEFITTPR  286 (383)
T ss_pred             ccCCcHHHHHHHHHhhccccccccccccccCCCCCCCcccccHHHHHHHHHHHHHH-hcCHHHHHHHHHHHhcCcc
Confidence            9888765544444332211    22223333321       224444444455542 233666554433 666555

>KOG1633|consensus

Probab=99.30  E-value=6.1e-12  Score=137.83  Aligned_cols=192  Identities=21%  Similarity=0.418  Sum_probs=135.4

Q ss_pred             HHHHhC-CceEEEEecCcccccCCceEEeeHHHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCC-cccccCcccC-c
Q psy12281        137 LSNHYG-DIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTE-DIYRVPNVFS-S  213 (456)
Q Consensus       137 L~~~~G-d~~V~V~~~~~~~y~~~~~~~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l-~~y~~P~~f~-~  213 (456)
                      .+...| ++.+.|.+.+     .+...+|+|.+|++|+.....      +..|-+.+..|...-  | ...+.|.... -
T Consensus        42 v~~~vg~~r~~~v~dv~-----~q~~~km~~~~~~~yy~~~~~------~R~yNVisLEfS~Tr--l~~~V~~P~ivr~l  108 (776)
T KOG1633|consen   42 VKELVGSDRMIDVVDVN-----TQKDCKMTLKEFVKYYSSPQR------KRLYNVISLEFSDTR--LSNLVESPEIVRKL  108 (776)
T ss_pred             hHHhhCCCccceeeeee-----ccccccccHHHHhhhhcCcch------hhhhheeccccCcch--HHhcCCCchhhhhh
Confidence            334445 4566666543     455779999999999987643      222335555443211  1 1223343322 2


Q ss_pred             chhhHhhhhhc--cCCCccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcc-cccCCCCccccCCCcc
Q psy12281        214 DWLNEYYSEHL--EHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKY-FKDSMGNLISDMRSVD  290 (456)
Q Consensus       214 D~ln~~~~~~~--~~~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~-Ly~~~g~~p~d~~~pd  290 (456)
                      ||.+.+|...-  .......++.|+.+++.|.+|.|..++.+|+..+.|.|.++|.||..... +|....     ...+.
T Consensus       109 dwV~n~wP~~~~~~~P~vqkyclmsv~~~Ytdfhidfggtsvwyhil~G~K~f~lI~pt~~nl~~ye~w~-----~s~~q  183 (776)
T KOG1633|consen  109 DWVDNQWPDDLKMEYPKVQKYCLMSVKDSYTDFHIDFGGTSVWYHILAGEKTFYLIPPTCENLELYECWE-----SSTPQ  183 (776)
T ss_pred             hchhccCCchhcccccccccceeeeccccccccccCCCCcchhhhhhccccceeeeCCcccchhhhhhhh-----hcccc
Confidence            67777765422  13455678889999999999999999999999999999999999998764 333211     11111


Q ss_pred             cC-CCCC--CceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCHHHHHHHH
Q psy12281        291 WS-TLPR--DTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEM  346 (456)
Q Consensus       291 ~~-~fp~--~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~~~~~~l  346 (456)
                      -+ -|..  ..++.|++++|+++|||+||.|.|++..+|+++..||....++...++.-
T Consensus       184 ~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV~Tp~d~l~fgGnflhsl~i~~QLr~y  242 (776)
T KOG1633|consen  184 DEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAVLTPTDCLVFGGNFLHSLTIEMQLRIY  242 (776)
T ss_pred             cccccCCccceeEEEEeccCceEecccceeEeeecCcchheeccchhhhhhhHHHHHHH
Confidence            11 1443  78999999999999999999999999999999999999999988877643

>KOG1356|consensus

Probab=99.00  E-value=2.7e-11  Score=130.24  Aligned_cols=241  Identities=21%  Similarity=0.303  Sum_probs=139.6

Q ss_pred             HHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCcccccCCceEEeeHHHHHHHHHhcc
Q psy12281         98 PYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKI  177 (456)
Q Consensus        98 ~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~~~y~~~~~~~m~l~efl~~~~~~~  177 (456)
                      .-| ++++..++||||+|....... ..|-      ++.|...||+..+.+.+|+..    +....-.+++|.+-+....
T Consensus       531 ~~F-QEhWkqGqPViVs~V~~~l~g-~lW~------P~a~~~~~g~q~~~l~n~~~~----~i~s~d~~~~fwegFe~~~  598 (889)
T KOG1356|consen  531 KHF-QEHWKQGQPVIVSGVHKKLNG-LLWK------PEALSRAFGDQVVDLSNCNNS----QIISNDCVDNFWEGFEGYS  598 (889)
T ss_pred             HHH-HHHHhcCCcEEehHhhhhccc-cccc------hHHHHHHhccchhhhhcCCCC----CccccchhhhHHHhhcccc
Confidence            345 677889999999998865544 3684      689999999998888777532    2222334445554444332


Q ss_pred             cCCCC--CCCCeeeeeccccccCCCCC---------cccccCcccCcc-hhhHhhhhhcc--CCCcc-ceee--------
Q psy12281        178 DGKLS--ETEPLYYLKDWHFTRDFKTE---------DIYRVPNVFSSD-WLNEYYSEHLE--HKDDY-RFVY--------  234 (456)
Q Consensus       178 ~~~~~--~~~~~~Yl~d~~~~~~~p~l---------~~y~~P~~f~~D-~ln~~~~~~~~--~~~~~-~~l~--------  234 (456)
                      .+-..  .....+-|+||.-.+.|.++         ....+|.|...+ -|| +....+.  .++|. .-+|        
T Consensus       599 kr~~~~~g~p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~r~G~LN-lAs~LP~~fv~PDLGPk~y~AYG~~~e  677 (889)
T KOG1356|consen  599 KRLKSENGWPEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTDRDGKLN-LASKLPEGFVRPDLGPKLYNAYGVSTE  677 (889)
T ss_pred             cCcccccCCeeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhcCCCccc-hHhhCcccccCCCCCchhhhhcccccc
Confidence            21111  12345778999644333221         122233332221 111 0000000  01111 1122        


Q ss_pred             eCCCCCcccccccccCccceeEEEE---------------------------------eE----EEEEEeCCCCCccccc
Q psy12281        235 MGPKETWTPLHADVFHSYSWSVNIC---------------------------------GR----KQWLLLAPGNEKYFKD  277 (456)
Q Consensus       235 iG~~gs~T~lH~D~~~~~sW~~~i~---------------------------------G~----Krw~L~pP~~~~~Ly~  277 (456)
                      .|.+.+.|.||.|+.+..  +.++.                                 +.    -.|-+|+..+.+.|..
T Consensus       678 ~gr~~gtTnLH~dvSDaV--NILvyv~e~~~~~~~~~~~~k~~~~~~~de~~~~~~~~~~e~~GALWhIF~~~Dv~Kire  755 (889)
T KOG1356|consen  678 LGRGDGTTNLHLDVSDAV--NILVYVGEPPGQIEQIAKVLKKIQEGDLDEITRSRISSVSETPGALWHIFRAQDVPKIRE  755 (889)
T ss_pred             ccCCCCceeeceehhhhh--hheeeeccCCchHHhHHHHHHhhhhcchhhhhhhhccccccCCcchhhhhhhcchHHHHH
Confidence            233345699999999977  44441                                 11    3455555555444433


Q ss_pred             CC-------CC-cc--ccCCCc---ccCCC------C--CCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCC
Q psy12281        278 SM-------GN-LI--SDMRSV---DWSTL------P--RDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWING  336 (456)
Q Consensus       278 ~~-------g~-~p--~d~~~p---d~~~f------p--~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~  336 (456)
                      ..       |. .+  ++.-++   -++++      .  ...+++++|..||+||||+|-.|||+||-.||.|+..|+++
T Consensus       756 yL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSP  835 (889)
T KOG1356|consen  756 YLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSP  835 (889)
T ss_pred             HHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCCh
Confidence            21       11 00  111110   11111      1  28999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy12281        337 TNIDHVYHEMVSHLEAV  353 (456)
Q Consensus       337 ~nl~~~~~~l~~~~~~~  353 (456)
                      .|+...++..+..+.++
T Consensus       836 E~v~ec~rLT~EfR~Lp  852 (889)
T KOG1356|consen  836 EHVSECFRLTQEFRQLP  852 (889)
T ss_pred             hhHHHHHHHHHHHhhCC
Confidence            99999999887555444

>KOG3706|consensus

Probab=98.80  E-value=3.5e-09  Score=107.74  Aligned_cols=96  Identities=21%  Similarity=0.288  Sum_probs=69.1

Q ss_pred             CCccceeeeCCCCC-cccccccccCccceeEEEEeEEEEEEeCCCCC-cccccCCCCccccCCCcccCCCCCCceEEEEE
Q psy12281        227 KDDYRFVYMGPKET-WTPLHADVFHSYSWSVNICGRKQWLLLAPGNE-KYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQ  304 (456)
Q Consensus       227 ~~~~~~l~iG~~gs-~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~-~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l  304 (456)
                      ...-.++|+-|+|| +-+.|+|--+.|  ..||.|||+|+||.|... ..|+-...   -+++..++    +.+.++.++
T Consensus       315 c~vGaNvYLTPagSqGfaPHyDdIeaF--vlQvEGrK~Wrly~P~~~~eel~l~sS---~Nf~eedl----gePV~e~vl  385 (629)
T KOG3706|consen  315 CLVGANVYLTPAGSQGFAPHYDDIEAF--VLQVEGRKHWRLYHPTVPLEELALVSS---DNFTEEDL----GEPVHEFVL  385 (629)
T ss_pred             cccccceeecCCCCCCCCCchhhhhhh--hheeccceeeEeecCCCcHhhhhhccC---CCCChhHh----CCchHHhhc
Confidence            34456799999887 688999999988  999999999999977653 33332100   01111222    257789999


Q ss_pred             cCCCEEEeCCCCeEEEEeCCC--cEEEEe
Q psy12281        305 EAGDSIFVPSGWHHQVTNLEH--TISINH  331 (456)
Q Consensus       305 ~pGD~LfIPsgW~H~V~nl~~--sIsvn~  331 (456)
                      +|||+||+|.|..||..+.+-  |+.|+.
T Consensus       386 e~GDllYfPRG~IHQA~t~~~vHSlHvTl  414 (629)
T KOG3706|consen  386 EPGDLLYFPRGTIHQADTPALVHSLHVTL  414 (629)
T ss_pred             CCCcEEEecCcceeeccccchhceeEEEe
Confidence            999999999999999877654  444443

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=97.39  E-value=0.0011  Score=62.19  Aligned_cols=75  Identities=19%  Similarity=0.268  Sum_probs=57.6

Q ss_pred             CCCCcccccccccCc-cceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCC
Q psy12281        237 PKETWTPLHADVFHS-YSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSG  315 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~-~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsg  315 (456)
                      ..|+...+|+.+... --|...|.|+-+.+|+.|.-                          +..++.++|||++|||++
T Consensus        88 t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G--------------------------~~~v~~~~~Gd~iyVPp~  141 (209)
T COG2140          88 TPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEG--------------------------EARVIAVRAGDVIYVPPG  141 (209)
T ss_pred             cCCcccccccCCCCCcccEEEEEeccEEEEEEcCCC--------------------------cEEEEEecCCcEEEeCCC
Confidence            345557778877643 13899999999999987752                          356899999999999999


Q ss_pred             CeEEEEeCCC-cEEEEeecCCCC
Q psy12281        316 WHHQVTNLEH-TISINHNWINGT  337 (456)
Q Consensus       316 W~H~V~nl~~-sIsvn~~~~~~~  337 (456)
                      |-|.+.|.++ .+-+..+|....
T Consensus       142 ~gH~t~N~Gd~pLvf~~v~~~~~  164 (209)
T COG2140         142 YGHYTINTGDEPLVFLNVYPADA  164 (209)
T ss_pred             cceEeecCCCCCEEEEEEEeCCC
Confidence            9999999998 555555555443

>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily

Probab=96.80  E-value=0.0011  Score=49.27  Aligned_cols=45  Identities=24%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             CcchhhHhhhhhccCCCccceeeeCCCCCcccccccccCccceeEEEEe
Q psy12281        212 SSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICG  260 (456)
Q Consensus       212 ~~D~ln~~~~~~~~~~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G  260 (456)
                      ..++++.+.....  ..+.+++|||+.+|.|++|.|.++..  +..+.|
T Consensus        11 ~~~ll~~~~~~~~--~~~~~~~~~G~~~s~t~~H~d~~~~~--n~~~~~   55 (57)
T smart00558       11 KLNLLSDLPEDIL--GPDVPYLYMGMAGSVTPWHIDDYDLV--NYLHQG   55 (57)
T ss_pred             cchHHHHCCcccC--CCCcceEEEeCCCCccceeEcCCCeE--EEEEec
Confidence            3455554332222  44559999999999999999999974  445554

Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=96.52  E-value=0.01  Score=52.87  Aligned_cols=80  Identities=21%  Similarity=0.211  Sum_probs=53.8

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEE--EEcCCCEE
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIV--EQEAGDSI  310 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~--~l~pGD~L  310 (456)
                      +.|.| |+...+|+.  +...|..++.|+=+..++.|+....                     +.+...-  .+++||++
T Consensus        39 ~~i~p-g~~~~Ph~h--~a~~i~~V~~G~~~~~~v~~~~~~~---------------------~~~~~~~~v~l~~Gdv~   94 (144)
T PF00190_consen   39 VLIEP-GGLRAPHYH--NADEIVYVIEGRGRVGVVGPGGPQE---------------------EFRDFSQKVRLKAGDVF   94 (144)
T ss_dssp             EEEET-TEEEEEEEE--SSEEEEEEEESEEEEEEEETTCSSS---------------------EEEEEEEEEEEETTEEE
T ss_pred             eehhc-CCccceeEe--eeeEEeeeeccceEEEEEecCCccc---------------------cceeeeceeeeecccce
Confidence            44455 555888888  5556799999999988887765310                     0112222  69999999


Q ss_pred             EeCCCCeEEEEeCC--CcEEEEeecCCC
Q psy12281        311 FVPSGWHHQVTNLE--HTISINHNWING  336 (456)
Q Consensus       311 fIPsgW~H~V~nl~--~sIsvn~~~~~~  336 (456)
                      +||+||.|...|.+  +.+.+.....+.
T Consensus        95 ~vP~G~~h~~~n~~~~~~~~~~~f~~~~  122 (144)
T PF00190_consen   95 VVPAGHPHWIINDGDDEALVLIIFDTNN  122 (144)
T ss_dssp             EE-TT-EEEEEECSSSSEEEEEEEEESS
T ss_pred             eeccceeEEEEcCCCCCCEEEEEEECCC
Confidence            99999999999995  455555544443

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=95.95  E-value=0.024  Score=52.53  Aligned_cols=59  Identities=24%  Similarity=0.451  Sum_probs=38.5

Q ss_pred             eEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecC
Q psy12281        255 SVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWI  334 (456)
Q Consensus       255 ~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~  334 (456)
                      +..+.|+-..+|..+....                      -...+.+...|||+++||++|.|.+.|.++.--+..+|+
T Consensus        87 Y~vl~G~g~~lLq~~~~~~----------------------~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~  144 (182)
T PF06560_consen   87 YEVLSGEGLILLQKEEGDD----------------------VGDVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWV  144 (182)
T ss_dssp             EEEEESSEEEEEE-TTS---------------------------EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEE
T ss_pred             EEEEeCEEEEEEEecCCCc----------------------ceeEEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEE
Confidence            5788999888887655411                      035678999999999999999999999999444444444


Q ss_pred             C
Q psy12281        335 N  335 (456)
Q Consensus       335 ~  335 (456)
                      +
T Consensus       145 ~  145 (182)
T PF06560_consen  145 P  145 (182)
T ss_dssp             E
T ss_pred             e
Confidence            4

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=95.83  E-value=0.044  Score=49.61  Aligned_cols=75  Identities=16%  Similarity=0.194  Sum_probs=58.8

Q ss_pred             ccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCC
Q psy12281        229 DYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGD  308 (456)
Q Consensus       229 ~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD  308 (456)
                      ++.-+.+|+.+..+.+|.+..+.  |+.|+.|.=...+...+                           +...+.+++||
T Consensus        28 ~~~v~~vgGpn~R~d~H~~~tdE--~FyqleG~~~l~v~d~g---------------------------~~~~v~L~eGd   78 (159)
T TIGR03037        28 EFMVTVVGGPNARTDFHDDPGEE--FFYQLKGEMYLKVTEEG---------------------------KREDVPIREGD   78 (159)
T ss_pred             cEEEEEeCCCCCCcccccCCCce--EEEEEcceEEEEEEcCC---------------------------cEEEEEECCCC
Confidence            55666788888889999977554  59999999776654332                           23469999999


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEee
Q psy12281        309 SIFVPSGWHHQVTNLEHTISINHN  332 (456)
Q Consensus       309 ~LfIPsgW~H~V~nl~~sIsvn~~  332 (456)
                      +++||+|--|.....++|+.+-.-
T Consensus        79 ~flvP~gvpHsP~r~~~t~~LvIE  102 (159)
T TIGR03037        79 IFLLPPHVPHSPQRPAGSIGLVIE  102 (159)
T ss_pred             EEEeCCCCCcccccCCCcEEEEEE
Confidence            999999999999998888777653

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=95.61  E-value=0.094  Score=49.15  Aligned_cols=67  Identities=21%  Similarity=0.256  Sum_probs=46.4

Q ss_pred             ccccccccC-ccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEE
Q psy12281        242 TPLHADVFH-SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQV  320 (456)
Q Consensus       242 T~lH~D~~~-~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V  320 (456)
                      |+.|+.... ..=++..+.|+-.++|-.++                          .......++|||+++||+||-|.+
T Consensus        87 t~gH~H~~~~~~EiyyvlsG~g~~~l~~~~--------------------------G~~~~~~v~pGd~v~IPpg~~H~~  140 (191)
T PRK04190         87 TKGHFHAKADRAEIYYGLKGKGLMLLQDPE--------------------------GEARWIEMEPGTVVYVPPYWAHRS  140 (191)
T ss_pred             CCCeEcCCCCCCEEEEEEeCEEEEEEecCC--------------------------CcEEEEEECCCCEEEECCCCcEEe
Confidence            666765432 12237789999888874321                          134578999999999999999999


Q ss_pred             EeCCC--cEEEEeecC
Q psy12281        321 TNLEH--TISINHNWI  334 (456)
Q Consensus       321 ~nl~~--sIsvn~~~~  334 (456)
                      .|.++  -.-++.++.
T Consensus       141 iN~G~epl~fl~v~p~  156 (191)
T PRK04190        141 VNTGDEPLVFLACYPA  156 (191)
T ss_pred             EECCCCCEEEEEEEcC
Confidence            99887  344444333

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=95.59  E-value=0.024  Score=43.37  Aligned_cols=57  Identities=25%  Similarity=0.303  Sum_probs=44.8

Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCe
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWH  317 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~  317 (456)
                      +|..++.|.+.... -+..++.|+-.+.+ .                              .-...++|||++++|++=+
T Consensus         7 pG~~~~~h~H~~~~-e~~~vl~G~~~~~~-~------------------------------~~~~~l~~Gd~~~i~~~~~   54 (71)
T PF07883_consen    7 PGGSIPPHRHPGED-EFFYVLSGEGTLTV-D------------------------------GERVELKPGDAIYIPPGVP   54 (71)
T ss_dssp             TTEEEEEEEESSEE-EEEEEEESEEEEEE-T------------------------------TEEEEEETTEEEEEETTSE
T ss_pred             CCCCCCCEECCCCC-EEEEEEECCEEEEE-c------------------------------cEEeEccCCEEEEECCCCe
Confidence            44568999976652 34889999977774 1                              1158999999999999999


Q ss_pred             EEEEeCCCc
Q psy12281        318 HQVTNLEHT  326 (456)
Q Consensus       318 H~V~nl~~s  326 (456)
                      |++.|.++.
T Consensus        55 H~~~n~~~~   63 (71)
T PF07883_consen   55 HQVRNPGDE   63 (71)
T ss_dssp             EEEEEESSS
T ss_pred             EEEEECCCC
Confidence            999999873

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=95.55  E-value=0.054  Score=49.84  Aligned_cols=74  Identities=16%  Similarity=0.190  Sum_probs=59.5

Q ss_pred             ccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCC
Q psy12281        229 DYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGD  308 (456)
Q Consensus       229 ~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD  308 (456)
                      ++....+|.+|..+.+|.|....+  +.|+.|.=+..+...+                           +...+.+.+||
T Consensus        34 d~~VmvvgGpn~r~d~H~~~tdE~--FyqleG~~~l~v~d~g---------------------------~~~~v~L~eGd   84 (177)
T PRK13264         34 DFIVMVVGGPNARTDFHYDPGEEF--FYQLEGDMYLKVQEDG---------------------------KRRDVPIREGE   84 (177)
T ss_pred             CEEEEEEccCCcccccccCCCceE--EEEECCeEEEEEEcCC---------------------------ceeeEEECCCC
Confidence            555667788888899999887665  8999999777765422                           22368999999


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEe
Q psy12281        309 SIFVPSGWHHQVTNLEHTISINH  331 (456)
Q Consensus       309 ~LfIPsgW~H~V~nl~~sIsvn~  331 (456)
                      +++||+|=-|.....++|+.+-.
T Consensus        85 ~fllP~gvpHsP~r~~~tv~Lvi  107 (177)
T PRK13264         85 MFLLPPHVPHSPQREAGSIGLVI  107 (177)
T ss_pred             EEEeCCCCCcCCccCCCeEEEEE
Confidence            99999999999999888887776

>KOG2132|consensus

Probab=95.52  E-value=0.0064  Score=60.43  Aligned_cols=88  Identities=16%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             CCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccC--CCCc---cccCCCcccCCCC---C--CceEEEEEc
Q psy12281        236 GPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDS--MGNL---ISDMRSVDWSTLP---R--DTVIIVEQE  305 (456)
Q Consensus       236 G~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~--~g~~---p~d~~~pd~~~fp---~--~~~~~~~l~  305 (456)
                      +.....|..|.|-..++  ..++.|-||-++++|.+...+..+  .-.+   -.|+..||+..++   .  +....++..
T Consensus       181 pvEvg~~y~~~~w~q~l--~t~~~g~~R~~~~~p~~~~YlAqh~lfdqi~elk~Di~iPDyc~~~~f~~~~v~~~~w~Gp  258 (355)
T KOG2132|consen  181 PVEVGSTYADEDWSQNL--MTQIKGIKRCILFEPRECLYLAQHHLFDQIPELKFDISIPDYCSFPNFENEVVDINAWIGP  258 (355)
T ss_pred             eeecccccchhHHHhhh--HHHhhhhhhhhcCCccccchhhhhhhhccchhhhhccCCCceeecCCCCccccceeEEecc
Confidence            33333489999999999  999999999999999933322111  1122   2688888887754   3  566677777


Q ss_pred             CCCEEEeCCCCeEEEEeCCC
Q psy12281        306 AGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       306 pGD~LfIPsgW~H~V~nl~~  325 (456)
                      +|++++||..|||.+....-
T Consensus       259 aGtV~pih~dp~hNi~~qv~  278 (355)
T KOG2132|consen  259 AGTVLPIHMDPWHNILSQVF  278 (355)
T ss_pred             CCceeccccccccceeeeee
Confidence            79999999999999998776

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=95.05  E-value=0.11  Score=53.70  Aligned_cols=65  Identities=26%  Similarity=0.365  Sum_probs=50.8

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-+.| |..+++|..+.. --|...+.|+=+..++.+..                          ...+..++|||++||
T Consensus       250 ~~l~P-G~~~~~H~H~~~-~E~~yvl~G~~~~~v~d~~g--------------------------~~~~~~l~~GD~~~i  301 (367)
T TIGR03404       250 VTVEP-GAMRELHWHPNA-DEWQYFIQGQARMTVFAAGG--------------------------NARTFDYQAGDVGYV  301 (367)
T ss_pred             EEECC-CCccCCeeCcCC-CeEEEEEEEEEEEEEEecCC--------------------------cEEEEEECCCCEEEE
Confidence            44455 445899997654 35789999999999876542                          233567999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |.|..|.++|.++
T Consensus       302 P~g~~H~i~N~G~  314 (367)
T TIGR03404       302 PRNMGHYVENTGD  314 (367)
T ss_pred             CCCCeEEEEECCC
Confidence            9999999999986

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=94.61  E-value=0.067  Score=36.31  Aligned_cols=34  Identities=24%  Similarity=0.565  Sum_probs=29.5

Q ss_pred             Eec-CCCCcEEeehhhhhcCCcEEeCCCCcceEEE
Q psy12281         24 YPC-PCGDRFQITKEQLKAGEDVATCPTCSLIIKP   57 (456)
Q Consensus        24 ~~C-rCg~~f~i~~~~l~~~~~~~~C~~CSl~i~~   57 (456)
                      ..| +||..|.|..+.+.+....+.|+.|...+.+
T Consensus         3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~   37 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYA   37 (38)
T ss_pred             EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEEe
Confidence            569 7999999999999876568999999988875

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=93.95  E-value=0.31  Score=42.42  Aligned_cols=61  Identities=25%  Similarity=0.255  Sum_probs=45.5

Q ss_pred             ceeeeCCCCC-cccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCE
Q psy12281        231 RFVYMGPKET-WTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDS  309 (456)
Q Consensus       231 ~~l~iG~~gs-~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~  309 (456)
                      ..+.+.+.+. ..+.|.+ .+-+  ..++.|+=++.+=                               .-++.+.+||+
T Consensus        39 ~~~~v~pg~~~~~~~H~~-~dE~--~~Vl~G~g~v~~~-------------------------------~~~~~v~~gd~   84 (127)
T COG0662          39 ARILVKPGEEISLHHHHH-RDEH--WYVLEGTGKVTIG-------------------------------GEEVEVKAGDS   84 (127)
T ss_pred             EEEEECCCcccCcccccC-cceE--EEEEeeEEEEEEC-------------------------------CEEEEecCCCE
Confidence            3445555444 3667776 4445  6789999877761                               23689999999


Q ss_pred             EEeCCCCeEEEEeCCC
Q psy12281        310 IFVPSGWHHQVTNLEH  325 (456)
Q Consensus       310 LfIPsgW~H~V~nl~~  325 (456)
                      +|||+|=.|.++|.+.
T Consensus        85 ~~iP~g~~H~~~N~G~  100 (127)
T COG0662          85 VYIPAGTPHRVRNTGK  100 (127)
T ss_pred             EEECCCCcEEEEcCCC
Confidence            9999999999999987

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=93.41  E-value=0.18  Score=51.32  Aligned_cols=66  Identities=17%  Similarity=0.095  Sum_probs=48.6

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|..++.|......+  ..+|.|.-.++.+                              ...++..++||++.+|++.
T Consensus        89 ~pGe~~~~HRht~sAl--~~vveG~G~~t~V------------------------------~g~~~~~~~gD~~~tP~w~  136 (335)
T TIGR02272        89 LPGEVAPSHRHTQSAL--RFIVEGKGAFTAV------------------------------DGERTTMHPGDFIITPSWT  136 (335)
T ss_pred             CCCCCCCccccccceE--EEEEEcCceEEEE------------------------------CCEEEeeeCCCEEEeCCCe
Confidence            4566688888777666  6777777555552                              2347899999999999999


Q ss_pred             eEEEEeCCCcEEEEeecC
Q psy12281        317 HHQVTNLEHTISINHNWI  334 (456)
Q Consensus       317 ~H~V~nl~~sIsvn~~~~  334 (456)
                      ||+-.|.++...|...+.
T Consensus       137 wH~H~n~~d~~~~wld~l  154 (335)
T TIGR02272       137 WHDHGNPGDEPMIWLDGL  154 (335)
T ss_pred             eEecccCCCCcEEEEecC
Confidence            999999988664443333

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=93.06  E-value=0.34  Score=43.20  Aligned_cols=76  Identities=17%  Similarity=0.263  Sum_probs=51.9

Q ss_pred             CCccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC
Q psy12281        227 KDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA  306 (456)
Q Consensus       227 ~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p  306 (456)
                      ..++.-+.+|++.+.|.+|.|...-+  +.|+.|.=.-.+...+                           +.-.+.+++
T Consensus        31 ~~~f~VmvVGGPN~R~DyHine~eE~--FyQ~kG~m~Lkv~e~g---------------------------~~kdi~I~E   81 (151)
T PF06052_consen   31 KDDFIVMVVGGPNQRTDYHINETEEF--FYQLKGDMCLKVVEDG---------------------------KFKDIPIRE   81 (151)
T ss_dssp             ESSEEEEEEESSB--SSEEE-SS-EE--EEEEES-EEEEEEETT---------------------------EEEEEEE-T
T ss_pred             cCCeEEEEEcCCCCCCccccCCcceE--EEEEeCcEEEEEEeCC---------------------------ceEEEEeCC
Confidence            34667778899999999999998866  9999998666654433                           344799999


Q ss_pred             CCEEEeCCCCeEEEEeCCCcEEEEe
Q psy12281        307 GDSIFVPSGWHHQVTNLEHTISINH  331 (456)
Q Consensus       307 GD~LfIPsgW~H~V~nl~~sIsvn~  331 (456)
                      ||+-++|++-.|...-.++||.+-.
T Consensus        82 Ge~fLLP~~vpHsP~R~~~tiGLVi  106 (151)
T PF06052_consen   82 GEMFLLPANVPHSPQRPADTIGLVI  106 (151)
T ss_dssp             TEEEEE-TT--EEEEE-TT-EEEEE
T ss_pred             CcEEecCCCCCCCCcCCCCcEEEEE
Confidence            9999999999999999888888754

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=92.92  E-value=0.56  Score=40.72  Aligned_cols=66  Identities=20%  Similarity=0.148  Sum_probs=51.2

Q ss_pred             eeeCCCCCcccccccc-cCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        233 VYMGPKETWTPLHADV-FHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~-~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-..+|..++.|..+ ....  ..++.|+=++.+-                               .-..++++||+++
T Consensus        47 ~v~~~~G~~~~~H~hp~~~~~--~~Vl~G~~~~~~~-------------------------------g~~~~l~~Gd~i~   93 (131)
T COG1917          47 LVTFEPGAVIPWHTHPLGEQT--IYVLEGEGTVQLE-------------------------------GEKKELKAGDVII   93 (131)
T ss_pred             EEEECCCcccccccCCCcceE--EEEEecEEEEEec-------------------------------CCceEecCCCEEE
Confidence            4555677789999998 4344  7889998777773                               1146889999999


Q ss_pred             eCCCCeEEEEeCCCc--EEEEe
Q psy12281        312 VPSGWHHQVTNLEHT--ISINH  331 (456)
Q Consensus       312 IPsgW~H~V~nl~~s--Isvn~  331 (456)
                      ||+|=.|.+.+.+++  +-|..
T Consensus        94 ip~g~~H~~~a~~~~~~~~l~v  115 (131)
T COG1917          94 IPPGVVHGLKAVEDEPMVLLLV  115 (131)
T ss_pred             ECCCCeeeeccCCCCceeEEEE
Confidence            999999999999996  44444

>smart00835 Cupin_1 Cupin

Probab=92.67  E-value=0.97  Score=40.11  Aligned_cols=66  Identities=21%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-+.+ |+..+.|+.... .-+..++.|+=+..+--+..                         .+..+..+++||+++|
T Consensus        35 ~~i~p-g~~~~~h~H~~~-~e~~~Vl~G~~~~~~~~~~~-------------------------~~~~~~~l~~GD~~~i   87 (146)
T smart00835       35 VNLEP-GGMLPPHYHPRA-TELLYVVRGEGRVGVVDPNG-------------------------NKVYDARLREGDVFVV   87 (146)
T ss_pred             EEecC-CcCcCCeeCCCC-CEEEEEEeCeEEEEEEeCCC-------------------------CeEEEEEecCCCEEEE
Confidence            44555 444778875422 23377899987776643311                         1355789999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |+|..|...|.++
T Consensus        88 p~g~~H~~~n~~~  100 (146)
T smart00835       88 PQGHPHFQVNSGD  100 (146)
T ss_pred             CCCCEEEEEcCCC
Confidence            9999999999876

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=91.59  E-value=1.4  Score=45.55  Aligned_cols=65  Identities=20%  Similarity=0.315  Sum_probs=48.6

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-+.+.+ ..++|....  .-|..++.|+=+..+....                          .+.+...+++||++||
T Consensus        72 ~~l~pG~-~~~~HwH~~--~E~~yVl~G~~~v~~~d~~--------------------------g~~~~~~L~~GD~~~f  122 (367)
T TIGR03404        72 MRLEPGA-IRELHWHKE--AEWAYVLYGSCRITAVDEN--------------------------GRNYIDDVGAGDLWYF  122 (367)
T ss_pred             EEEcCCC-CCCcccCCC--ceEEEEEeeEEEEEEEcCC--------------------------CcEEEeEECCCCEEEE
Confidence            4455544 477888753  3579999999998886432                          1234448999999999


Q ss_pred             CCCCeEEEEeCCCc
Q psy12281        313 PSGWHHQVTNLEHT  326 (456)
Q Consensus       313 PsgW~H~V~nl~~s  326 (456)
                      |+|..|...|.++.
T Consensus       123 P~g~~H~~~n~~~~  136 (367)
T TIGR03404       123 PPGIPHSLQGLDEG  136 (367)
T ss_pred             CCCCeEEEEECCCC
Confidence            99999999999764

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=91.34  E-value=0.28  Score=35.41  Aligned_cols=34  Identities=24%  Similarity=0.537  Sum_probs=25.4

Q ss_pred             ceEEEec-CCCCcEEeehhhhhcCCcEEeCCCCcceEEEe
Q psy12281         20 ETYYYPC-PCGDRFQITKEQLKAGEDVATCPTCSLIIKPS   58 (456)
Q Consensus        20 ~~~~~~C-rCg~~f~i~~~~l~~~~~~~~C~~CSl~i~~~   58 (456)
                      ....|-| |||..|.+    +++ ...+.|+.|+-.|-+.
T Consensus         3 ~~~~Y~C~~Cg~~~~~----~~~-~~~irCp~Cg~rIl~K   37 (49)
T COG1996           3 AMMEYKCARCGREVEL----DQE-TRGIRCPYCGSRILVK   37 (49)
T ss_pred             ceEEEEhhhcCCeeeh----hhc-cCceeCCCCCcEEEEe
Confidence            4578999 99999832    222 3578999999988764

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=91.00  E-value=0.77  Score=40.93  Aligned_cols=65  Identities=17%  Similarity=0.127  Sum_probs=38.2

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      .+|+.||.|..-+.-.  ++++.|+=.-.|......   |  +                 .++.++..-|++++.||.+=
T Consensus        52 APG~~TPiHRHsCEEV--FvVLkG~GTl~l~~~~~~---~--p-----------------G~pqef~~~pnSTf~IPvn~  107 (167)
T PF02041_consen   52 APGSATPIHRHSCEEV--FVVLKGSGTLYLASSHEK---Y--P-----------------GKPQEFPIFPNSTFHIPVND  107 (167)
T ss_dssp             -TT-B--EEEESS-EE--EEEEE--EEEEE--SSSS---S---------------------S-EEEEE-TTEEEEE-TT-
T ss_pred             cCCCCCCCccccccEE--EEEEecceEEEEeccccc---C--C-----------------CCceEEEecCCCeEEeCCCC
Confidence            5678899999999998  899999988888622210   1  1                 46788999999999999999


Q ss_pred             eEEEEeCCC
Q psy12281        317 HHQVTNLEH  325 (456)
Q Consensus       317 ~H~V~nl~~  325 (456)
                      -|||.|.+.
T Consensus       108 ~HQv~NT~e  116 (167)
T PF02041_consen  108 AHQVWNTNE  116 (167)
T ss_dssp             -EEEE---S
T ss_pred             cceeecCCC
Confidence            999999874

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=90.64  E-value=1.2  Score=39.08  Aligned_cols=77  Identities=17%  Similarity=0.257  Sum_probs=40.4

Q ss_pred             ceeee--CCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCC-
Q psy12281        231 RFVYM--GPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAG-  307 (456)
Q Consensus       231 ~~l~i--G~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pG-  307 (456)
                      |..|+  -+.|..-.+|.....+ -|.+.+.|+=++.+.....                           ..+++|... 
T Consensus        33 rvy~i~~~~~~~~RG~H~Hk~~~-~~~~~l~Gs~~v~~~d~~~---------------------------~~~~~L~~~~   84 (131)
T PF05523_consen   33 RVYYIYNVPPGVIRGWHAHKKTT-QWFIVLSGSFKVVLDDGRE---------------------------EEEFILDEPN   84 (131)
T ss_dssp             EEEEEES--SS--EEEEEESS---EEEEEEES-EEEEEE-SS----------------------------EEEEEE--TT
T ss_pred             EEEEEEcCCCCCccccccccccc-EEEEEEeCEEEEEEecCCC---------------------------cEEEEECCCC
Confidence            44555  4555556788776544 4789999998888643222                           134555444 


Q ss_pred             CEEEeCCCCeEEEEeCCCcEEEEeecCCC
Q psy12281        308 DSIFVPSGWHHQVTNLEHTISINHNWING  336 (456)
Q Consensus       308 D~LfIPsgW~H~V~nl~~sIsvn~~~~~~  336 (456)
                      ..|+||+|+||...++++. ||-..|.+.
T Consensus        85 ~~L~Ippg~w~~~~~~s~~-svlLv~as~  112 (131)
T PF05523_consen   85 KGLYIPPGVWHGIKNFSED-SVLLVLASE  112 (131)
T ss_dssp             EEEEE-TT-EEEEE---TT--EEEEEESS
T ss_pred             eEEEECCchhhHhhccCCC-cEEEEEcCC
Confidence            4899999999999999885 444445543

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>KOG0958|consensus

Probab=90.29  E-value=0.11  Score=56.23  Aligned_cols=114  Identities=20%  Similarity=0.209  Sum_probs=85.3

Q ss_pred             CCccceeeeCCCCCcccccccccCccceeEEEEeE-EEEEEeCCCCCcccccCCCCc-cccC-CCcccCCC------C--
Q psy12281        227 KDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGR-KQWLLLAPGNEKYFKDSMGNL-ISDM-RSVDWSTL------P--  295 (456)
Q Consensus       227 ~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~-Krw~L~pP~~~~~Ly~~~g~~-p~d~-~~pd~~~f------p--  295 (456)
                      ....+.||.|.=-+.-++|.+-++-+|-+..--|. |.|+.+||.....|....+.+ |... ..+++-++      |  
T Consensus       171 gvNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~~C~aFLRHK~~LiSP~~  250 (690)
T KOG0958|consen  171 GVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQGCPAFLRHKMTLISPSV  250 (690)
T ss_pred             ccCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCccccCCHHHHhhcccccCHHH
Confidence            35667899998888899999999999777777776 999999999987765432222 1110 01122121      1  


Q ss_pred             ----CCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCHH
Q psy12281        296 ----RDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNID  340 (456)
Q Consensus       296 ----~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~  340 (456)
                          ..+..+++|++||.|.-=++=||.--|++.+++=+.||....-+.
T Consensus       251 LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~  299 (690)
T KOG0958|consen  251 LKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWID  299 (690)
T ss_pred             HHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhh
Confidence                277889999999999988888999999999999888888775443

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=90.19  E-value=0.3  Score=41.73  Aligned_cols=26  Identities=35%  Similarity=0.521  Sum_probs=24.0

Q ss_pred             EEEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        300 IIVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       300 ~~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      ..++..|||.+|||+|-.||-.|+.+
T Consensus        88 ~ha~~~pGDf~YiPpgVPHqp~N~S~  113 (142)
T COG4101          88 EHAEVGPGDFFYIPPGVPHQPANLST  113 (142)
T ss_pred             eeEEecCCCeEEcCCCCCCcccccCC
Confidence            36889999999999999999999987

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=89.94  E-value=0.33  Score=32.73  Aligned_cols=31  Identities=19%  Similarity=0.695  Sum_probs=27.0

Q ss_pred             ec-CCCCcEEeehhhhhcCCcEEeCCCCcceE
Q psy12281         25 PC-PCGDRFQITKEQLKAGEDVATCPTCSLII   55 (456)
Q Consensus        25 ~C-rCg~~f~i~~~~l~~~~~~~~C~~CSl~i   55 (456)
                      .| +|+-.|.|.++.|-.+...++|+.|+-.+
T Consensus         4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF   35 (36)
T ss_pred             ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence            58 69999999999998877899999998654

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=89.56  E-value=0.47  Score=32.15  Aligned_cols=32  Identities=31%  Similarity=0.914  Sum_probs=27.9

Q ss_pred             ec-CCCCcEEeehhhhhcCCcEEeCCCCcceEE
Q psy12281         25 PC-PCGDRFQITKEQLKAGEDVATCPTCSLIIK   56 (456)
Q Consensus        25 ~C-rCg~~f~i~~~~l~~~~~~~~C~~CSl~i~   56 (456)
                      .| .|+..|.|+++.|.++...|.|+.|.-...
T Consensus         4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence            58 599999999999988778999999986654

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=89.50  E-value=1.6  Score=40.23  Aligned_cols=74  Identities=16%  Similarity=0.171  Sum_probs=46.3

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCC--cccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNE--KYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPS  314 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~--~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPs  314 (456)
                      ++|..|+.| |..++..|..++.|.=+=..|-....  ..+.                    .......+.+|.+.+.|.
T Consensus        83 ~pGq~S~IH-DH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~  141 (175)
T PF05995_consen   83 PPGQRSPIH-DHGGSWGWVKVLSGELEETRYRRPDDGGAPLE--------------------LVGRERLLPGGVTYIFDP  141 (175)
T ss_dssp             -TT-B--EE-E-TTSEEEEEEEESEEEEEEEEESTSSS-EEE--------------------ECEEEEEETTTEEEEBTT
T ss_pred             CCCCcCCCC-CCCCceEEEEEecceEEEEEeccCCcccCccc--------------------ccCceEecCCCeEEecCC
Confidence            567789999 77777788999999966665533222  1000                    223445677888888899


Q ss_pred             CCeEEEEeCC-C--cEEEEe
Q psy12281        315 GWHHQVTNLE-H--TISINH  331 (456)
Q Consensus       315 gW~H~V~nl~-~--sIsvn~  331 (456)
                      +..|+|.|.. +  +||+..
T Consensus       142 ~~iH~v~n~s~~~~avSLHv  161 (175)
T PF05995_consen  142 HGIHRVENPSGDEPAVSLHV  161 (175)
T ss_dssp             TBEEEEEES-SSS-EEEEEE
T ss_pred             CCeEEeccCCCCCCEEEEEE
Confidence            9999999875 4  666654

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=88.78  E-value=2.3  Score=37.00  Aligned_cols=30  Identities=10%  Similarity=-0.017  Sum_probs=25.8

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCcEEEE
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHTISIN  330 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn  330 (456)
                      +..++|||++|+|++=.|+..|.++...|.
T Consensus        76 ~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~  105 (125)
T PRK13290         76 VHPIRPGTMYALDKHDRHYLRAGEDMRLVC  105 (125)
T ss_pred             EEEeCCCeEEEECCCCcEEEEcCCCEEEEE
Confidence            688999999999999999999997654444

>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.59  E-value=0.97  Score=44.77  Aligned_cols=98  Identities=16%  Similarity=0.127  Sum_probs=59.1

Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCcc--cccCCCCcccc--CCCcccCCCCCCceEEEEEcCCCEEEeC
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKY--FKDSMGNLISD--MRSVDWSTLPRDTVIIVEQEAGDSIFVP  313 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~--Ly~~~g~~p~d--~~~pd~~~fp~~~~~~~~l~pGD~LfIP  313 (456)
                      .+..|++|.|...-..=.-+.++  -|+-+-|-...+  +.--+|..-+|  +..||-+.|.+.....+.++|||+||.=
T Consensus       129 ~~~~t~~HqD~~~~~~~~~~lV~--~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~pv~lekGDallF~  206 (299)
T COG5285         129 GAVATRWHQDYPLVSPGYPALVN--AWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAVPVELEKGDALLFN  206 (299)
T ss_pred             cccccccccccccccCCccceEE--EEEeccccccccCceEEEecccccccCCCCCCccchhhhcceeeeecCCCEEEEc
Confidence            34568899994332100111111  455555544443  22223444344  4445555566666888999999999998


Q ss_pred             CCCeEEEEeCCC---cEEEEeecCCCC
Q psy12281        314 SGWHHQVTNLEH---TISINHNWINGT  337 (456)
Q Consensus       314 sgW~H~V~nl~~---sIsvn~~~~~~~  337 (456)
                      ..=||....-..   -++++++|+...
T Consensus       207 ~~L~HaA~aNrT~~~R~A~~~~~~~~~  233 (299)
T COG5285         207 GSLWHAAGANRTSADRVALTLQFTVSF  233 (299)
T ss_pred             chhhhhhhcCCCCcccceEEEEEeecc
Confidence            888887755443   588888888776

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=87.55  E-value=1.4  Score=39.78  Aligned_cols=62  Identities=21%  Similarity=0.390  Sum_probs=45.5

Q ss_pred             ceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEE
Q psy12281        231 RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSI  310 (456)
Q Consensus       231 ~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~L  310 (456)
                      +.+.+-|..+ .++|+....+=.| .+|.|.-..++                               ..-...+.+||.+
T Consensus        66 kri~V~pG~~-lSlq~H~~R~E~W-~Vv~G~a~v~~-------------------------------~~~~~~~~~g~sv  112 (151)
T PF01050_consen   66 KRITVNPGKR-LSLQYHHHRSEHW-TVVSGTAEVTL-------------------------------DDEEFTLKEGDSV  112 (151)
T ss_pred             EEEEEcCCCc-cceeeecccccEE-EEEeCeEEEEE-------------------------------CCEEEEEcCCCEE
Confidence            4466666554 7777777666555 35777776666                               1125679999999


Q ss_pred             EeCCCCeEEEEeCCC
Q psy12281        311 FVPSGWHHQVTNLEH  325 (456)
Q Consensus       311 fIPsgW~H~V~nl~~  325 (456)
                      |||.|-.|++.|.+.
T Consensus       113 ~Ip~g~~H~i~n~g~  127 (151)
T PF01050_consen  113 YIPRGAKHRIENPGK  127 (151)
T ss_pred             EECCCCEEEEECCCC
Confidence            999999999999875

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.02  E-value=0.69  Score=35.63  Aligned_cols=33  Identities=24%  Similarity=0.652  Sum_probs=26.0

Q ss_pred             EEEec-CCC--CcEEeehhhhhcCCcEEeCCCCcce
Q psy12281         22 YYYPC-PCG--DRFQITKEQLKAGEDVATCPTCSLI   54 (456)
Q Consensus        22 ~~~~C-rCg--~~f~i~~~~l~~~~~~~~C~~CSl~   54 (456)
                      ..|.| .||  ..-.|++..-+.|..+|+|++|.-+
T Consensus         3 l~FTC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~   38 (66)
T PF05180_consen    3 LTFTCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNR   38 (66)
T ss_dssp             EEEEETTTTEEEEEEEEHHHHHTSEEEEE-TTS--E
T ss_pred             EEEEcCCCCCccceeeCHHHHhCCeEEEECCCCcce
Confidence            46789 699  4788999999999999999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=85.85  E-value=4.9  Score=37.15  Aligned_cols=78  Identities=14%  Similarity=0.052  Sum_probs=49.0

Q ss_pred             eeeeCCCCCccccccccc---CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--
Q psy12281        232 FVYMGPKETWTPLHADVF---HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--  306 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~---~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--  306 (456)
                      ++-...+|+.-.+|+...   .-+  ...+.|+=.-+++.....               +|.   |  .+...++|.+  
T Consensus        47 n~S~S~~gvlRGlH~q~~~~q~Kl--v~c~~G~i~dV~VDlR~~---------------SpT---f--G~~~~~~L~~~~  104 (176)
T TIGR01221        47 NHSKSYKGVLRGLHYQRPHPQGKL--VRVLRGEVFDVAVDLRRN---------------SPT---F--GKWVGVLLSAEN  104 (176)
T ss_pred             EEEEecCCEEEEEEECCCCCCceE--EEEccCCEEEEEEECCCC---------------cCC---C--CeEEEEEECCCC
Confidence            344456688888888642   223  556666655555433221               111   1  3455666666  


Q ss_pred             CCEEEeCCCCeEEEEeCCCcEEEEe
Q psy12281        307 GDSIFVPSGWHHQVTNLEHTISINH  331 (456)
Q Consensus       307 GD~LfIPsgW~H~V~nl~~sIsvn~  331 (456)
                      +-+||||+|.+|.-.+|++...+.+
T Consensus       105 ~~~l~IP~G~aHGF~~L~d~a~v~Y  129 (176)
T TIGR01221       105 KRQLWIPEGFAHGFVVLSDEAEFLY  129 (176)
T ss_pred             CCEEEeCCcceeEEEEcCCCeEEEE
Confidence            6699999999999999998744444

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=85.39  E-value=6.8  Score=36.12  Aligned_cols=89  Identities=12%  Similarity=0.065  Sum_probs=56.2

Q ss_pred             cceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCC--
Q psy12281        230 YRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAG--  307 (456)
Q Consensus       230 ~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pG--  307 (456)
                      ..++.++.+|+.-.+|+..-.-.-..+.+.|+=.-.++.....               +|   .|  .+...+++.+-  
T Consensus        46 Q~n~S~S~~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~---------------Sp---Ty--g~~~~~~ls~~N~  105 (173)
T COG1898          46 QDNHSFSYPGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKD---------------SP---TY--GKWVGVVLSAENK  105 (173)
T ss_pred             cceEEEecCCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCC---------------CC---Cc--ceEEEEEecCCCc
Confidence            3456667788888999987662112445566655555433221               11   11  23445566554  


Q ss_pred             CEEEeCCCCeEEEEeCCCcEEEEeecCCCCC
Q psy12281        308 DSIFVPSGWHHQVTNLEHTISINHNWINGTN  338 (456)
Q Consensus       308 D~LfIPsgW~H~V~nl~~sIsvn~~~~~~~n  338 (456)
                      .+|+||.|+.|--.+|+++..+.+.-.+.++
T Consensus       106 ~~l~IP~G~AHGf~~L~d~~~~~y~~~~~Y~  136 (173)
T COG1898         106 RQLYIPPGFAHGFQVLSDDAEVVYKVTEEYD  136 (173)
T ss_pred             eEEEeCCcccceeEEccCceEEEEEecceeC
Confidence            8999999999999999998766665444443

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=85.26  E-value=5.7  Score=32.83  Aligned_cols=36  Identities=39%  Similarity=0.480  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCEEEeCCCCeEEEEeCCC---cEEEEee
Q psy12281        297 DTVIIVEQEAGDSIFVPSGWHHQVTNLEH---TISINHN  332 (456)
Q Consensus       297 ~~~~~~~l~pGD~LfIPsgW~H~V~nl~~---sIsvn~~  332 (456)
                      ...+.+..++|++|+.|+.-+|.|.....   -|||++|
T Consensus        63 ~~~~~~~p~~G~lvlFPs~l~H~v~p~~~~~~RisisfN  101 (101)
T PF13759_consen   63 SPYYIVEPEEGDLVLFPSWLWHGVPPNNSDEERISISFN  101 (101)
T ss_dssp             -SEEEE---TTEEEEEETTSEEEE----SSS-EEEEEEE
T ss_pred             CceEEeCCCCCEEEEeCCCCEEeccCcCCCCCEEEEEcC
Confidence            67788999999999999999999976543   5666664

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=84.66  E-value=0.65  Score=32.37  Aligned_cols=31  Identities=32%  Similarity=0.927  Sum_probs=24.0

Q ss_pred             eEEEec-CCCCcEEeehhhhhcCCcEEeCCCCcc
Q psy12281         21 TYYYPC-PCGDRFQITKEQLKAGEDVATCPTCSL   53 (456)
Q Consensus        21 ~~~~~C-rCg~~f~i~~~~l~~~~~~~~C~~CSl   53 (456)
                      .|.|.| .||..|++-..- .+ ...+.|+.|.-
T Consensus         3 ~Yey~C~~Cg~~fe~~~~~-~~-~~~~~CP~Cg~   34 (42)
T PF09723_consen    3 IYEYRCEECGHEFEVLQSI-SE-DDPVPCPECGS   34 (42)
T ss_pred             CEEEEeCCCCCEEEEEEEc-CC-CCCCcCCCCCC
Confidence            489999 599999986543 33 46899999976

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=84.11  E-value=0.83  Score=31.16  Aligned_cols=34  Identities=32%  Similarity=0.849  Sum_probs=25.0

Q ss_pred             eEEEec-CCCCcEEeehhhhhcCCcEEeCCCCcceEE
Q psy12281         21 TYYYPC-PCGDRFQITKEQLKAGEDVATCPTCSLIIK   56 (456)
Q Consensus        21 ~~~~~C-rCg~~f~i~~~~l~~~~~~~~C~~CSl~i~   56 (456)
                      .|.|.| -||..|++....- + ...+.|+.|.-.++
T Consensus         3 ~Y~y~C~~Cg~~fe~~~~~~-~-~~~~~CP~Cg~~~~   37 (41)
T smart00834        3 IYEYRCEDCGHTFEVLQKIS-D-DPLATCPECGGDVR   37 (41)
T ss_pred             CEEEEcCCCCCEEEEEEecC-C-CCCCCCCCCCCcce
Confidence            489999 4999998865432 2 35788999987543

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PLN00212 glutelin; Provisional

Probab=83.14  E-value=7.2  Score=41.86  Aligned_cols=74  Identities=14%  Similarity=0.056  Sum_probs=55.7

Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCe
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWH  317 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~  317 (456)
                      +|+..+.|+.+..+ .-..++.|+=+.-++.+.         |                .+.+...|++||++.||.|+.
T Consensus       357 ~gam~~PHwn~nA~-eI~yV~rG~g~vqvV~~~---------g----------------~~vf~~~L~~GdvfVVPqg~~  410 (493)
T PLN00212        357 QNALLSPFWNVNAH-SVVYITQGRARVQVVSNN---------G----------------KTVFNGVLRPGQLLIIPQHYA  410 (493)
T ss_pred             CCcccCCeecCCCC-EEEEEeecceEEEEEcCC---------C----------------CEEEEEEEcCCCEEEECCCCe
Confidence            45568889887744 347788898888887643         1                245778999999999999999


Q ss_pred             EEEEeCCCcEEEEeecCCCC
Q psy12281        318 HQVTNLEHTISINHNWINGT  337 (456)
Q Consensus       318 H~V~nl~~sIsvn~~~~~~~  337 (456)
                      |...+-.+.+-++....++.
T Consensus       411 v~~~A~~egfe~v~F~tna~  430 (493)
T PLN00212        411 VLKKAEREGCQYIAFKTNAN  430 (493)
T ss_pred             EEEeecCCceEEEEeecCCC
Confidence            99888777776666555553

>TIGR02466 conserved hypothetical protein

Probab=82.84  E-value=8.1  Score=36.50  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=25.6

Q ss_pred             eEEEEEcCCCEEEeCCCCeEEEEeCCC---cEEEEeec
Q psy12281        299 VIIVEQEAGDSIFVPSGWHHQVTNLEH---TISINHNW  333 (456)
Q Consensus       299 ~~~~~l~pGD~LfIPsgW~H~V~nl~~---sIsvn~~~  333 (456)
                      .+.+.-++|++|+.||.-+|.|.....   -|||++|+
T Consensus       161 ~~~v~P~~G~lvlFPS~L~H~v~p~~~~~~RISiSFNl  198 (201)
T TIGR02466       161 FVYVPPQEGRVLLFESWLRHEVPPNESEEERISVSFNY  198 (201)
T ss_pred             cEEECCCCCeEEEECCCCceecCCCCCCCCEEEEEEee
Confidence            344556999999999999999987643   45555443

This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=82.43  E-value=13  Score=30.02  Aligned_cols=57  Identities=16%  Similarity=0.144  Sum_probs=42.3

Q ss_pred             CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEE
Q psy12281        250 HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISI  329 (456)
Q Consensus       250 ~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsv  329 (456)
                      ++.+-..++.|+=+|+.+.+...                        ....++...+|+.-+||+.-||.|..+++-+.+
T Consensus        24 GtWg~l~Vl~G~L~f~~~~~~~~------------------------~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f   79 (82)
T PF09313_consen   24 GTWGKLRVLEGELKFYGLDEEGE------------------------EPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRF   79 (82)
T ss_dssp             TEEEEEEEEESEEEEEEESSTT-------------------------SESEEEEEETTEEEEE-TT-EEEEEESSTT-EE
T ss_pred             CeEEEEEEEeeEEEEEEECCCCC------------------------ceeEEEEeCCCCCceeCCCceEEEEECCCCEEE
Confidence            44555778999999999887543                        124478999999999999999999999985544


Q ss_pred             E
Q psy12281        330 N  330 (456)
Q Consensus       330 n  330 (456)
                      .
T Consensus        80 ~   80 (82)
T PF09313_consen   80 Q   80 (82)
T ss_dssp             E
T ss_pred             E
Confidence            3

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=82.35  E-value=8.3  Score=35.57  Aligned_cols=34  Identities=21%  Similarity=0.090  Sum_probs=27.1

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecC
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWI  334 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~  334 (456)
                      +..+++||.+++|++=.|...|.++.-+.-.++.
T Consensus       147 ~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~  180 (185)
T PRK09943        147 DYHLVAGQSYAINTGIPHSFSNTSAGICRIISAH  180 (185)
T ss_pred             EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEe
Confidence            5789999999999999999999877444444333

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=82.28  E-value=9.1  Score=35.39  Aligned_cols=82  Identities=17%  Similarity=0.169  Sum_probs=52.0

Q ss_pred             eeeeCCCCCcccccccccC----ccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCC
Q psy12281        232 FVYMGPKETWTPLHADVFH----SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAG  307 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~----~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pG  307 (456)
                      ++-...+|+.-.+|+....    -+  ..++.|+=.-+++.....               +|.+     .+...++|.++
T Consensus        46 n~S~s~~gvlRGlH~q~~~~~q~Kl--v~~~~G~i~dV~vDlR~~---------------SpTf-----g~~~~~~Ls~~  103 (176)
T PF00908_consen   46 NISVSKKGVLRGLHYQSPPYAQAKL--VRCLRGEIFDVAVDLRKG---------------SPTF-----GKWVSVELSAE  103 (176)
T ss_dssp             EEEEEETTBEEEEEEESTTT-EEEE--EEEEESEEEEEEEE-BTT---------------STTT-----T-EEEEEEETT
T ss_pred             EEEEccccEEEEEEEecCCCCCCcE--EEEecCeEEEEEEECCCC---------------CCCC-----CEEEEEEeCcc
Confidence            4455566888889987664    23  556677655555422111               1211     46777888777


Q ss_pred             C--EEEeCCCCeEEEEeCCCcEEEEeecCC
Q psy12281        308 D--SIFVPSGWHHQVTNLEHTISINHNWIN  335 (456)
Q Consensus       308 D--~LfIPsgW~H~V~nl~~sIsvn~~~~~  335 (456)
                      +  .||||+|.+|...++++.-.|.+.--+
T Consensus       104 n~~~l~IP~G~aHGf~~l~d~a~v~Y~~t~  133 (176)
T PF00908_consen  104 NPRQLYIPPGVAHGFQTLEDDAEVLYKVTN  133 (176)
T ss_dssp             T--EEEE-TTEEEEEEESSSEEEEEEEESS
T ss_pred             ccCEEEeCCcceeeEEeccCceEEEEecCC
Confidence            6  799999999999999996555554433

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=80.82  E-value=5.4  Score=42.63  Aligned_cols=26  Identities=19%  Similarity=0.318  Sum_probs=24.0

Q ss_pred             EEEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        300 IIVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       300 ~~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      -+..++|||.+|||++=.|+..|.++
T Consensus       415 ~~~~l~~GDsi~ip~~~~H~~~N~g~  440 (468)
T TIGR01479       415 ETLLLTENESTYIPLGVIHRLENPGK  440 (468)
T ss_pred             EEEEecCCCEEEECCCCcEEEEcCCC
Confidence            36899999999999999999999887

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>KOG3277|consensus

Probab=80.80  E-value=1.7  Score=38.83  Aligned_cols=43  Identities=23%  Similarity=0.503  Sum_probs=34.0

Q ss_pred             CccccCCCceEEEec-CCC--CcEEeehhhhhcCCcEEeCCCCcce
Q psy12281         12 DFEYDEDDETYYYPC-PCG--DRFQITKEQLKAGEDVATCPTCSLI   54 (456)
Q Consensus        12 d~~~~~~~~~~~~~C-rCg--~~f~i~~~~l~~~~~~~~C~~CSl~   54 (456)
                      +|-...-.....|.| -||  ..=.|++..-+.|..+|+|++|.-.
T Consensus        68 ~~~~~kp~m~l~yTCkvCntRs~ktisk~AY~~GvVivqC~gC~~~  113 (165)
T KOG3277|consen   68 FFKVPKPRMQLAYTCKVCNTRSTKTISKQAYEKGVVIVQCPGCKNH  113 (165)
T ss_pred             cccCCCcceEEEEEeeccCCccccccChhhhhCceEEEECCCCccc
Confidence            344444455689999 599  4788999999999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	456
3ld8_A	334	Structure Of Jmjd6 And Fab Fragments Length = 334		5e-15
3k2o_A	336	Structure Of An Oxygenase Length = 336		7e-13
1wge_A	83	Solution Structure Of The Mouse Desr1 Length = 83		3e-10
2jr7_A	89	Solution Structure Of Human Desr1 Length = 89		5e-10
1yop_A	83	The Solution Structure Of Kti11p Length = 83		7e-07
1yws_A	82	Solution Structure Of Ybl071w-A From Saccharomyces		8e-07
3kv5_D	488	Structure Of Kiaa1718, Human Jumonji Demethylase, I		5e-05
3kv9_A	397	Structure Of Kiaa1718 Jumonji Domain Length = 397		2e-04

>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments Length = 334

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 40/257 (15%)
Query: 109 KPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKE 168
           KP +L +    W++   W        E L   Y + +      N  Y        M +K 
Sbjct: 68  KPVVLLNAQEGWSAQEKWT------LERLKRKYRNQKFKCGEDNDGY-----SVKMKMKY 116
Query: 169 YTIYWQNKIDGKLSETEPLYYLKD---WHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLE 225
           Y  Y ++  D       PLY        H  R    ED Y+VP  F+ D L +Y  E  +
Sbjct: 117 YIEYMESTRD-----DSPLYIFDSSYGEHPKRRKLLED-YKVPKFFTDD-LFQYAGE--K 167
Query: 226 HKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNE----KYFKDSMGN 281
            +  YR+  MGP  + T +H D   + +W+  + G K+W L          K  +D  GN
Sbjct: 168 RRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGN 227
Query: 282 LISDMRSVDWSTL--PRDTV---------IIVEQEAGDSIFVPSGWHHQVTNLEHTISIN 330
              +  ++ W  +  PR  +         + + Q+ G+++FVP GW H V NL+ TI+I 
Sbjct: 228 QQDE--AITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAIT 285
Query: 331 HNWINGTNIDHVYHEMV 347
            N+ + TN   V+H+ V
Sbjct: 286 QNFASSTNFPVVWHKTV 302

>pdb|3K2O|A Chain A, Structure Of An Oxygenase Length = 336

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 107/257 (41%), Gaps = 40/257 (15%)
Query: 109 KPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKE 168
           KP +L +    W++   W        E L   Y + +      N  Y           K 
Sbjct: 69  KPVVLLNAQEGWSAQEKWT------LERLKRKYRNQKFKCGEDNDGY-----SVKXKXKY 117
Query: 169 YTIYWQNKIDGKLSETEPLYYLKD---WHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLE 225
           Y  Y ++  D       PLY        H  R    ED Y+VP  F+ D L +Y  E  +
Sbjct: 118 YIEYXESTRD-----DSPLYIFDSSYGEHPKRRKLLED-YKVPKFFTDD-LFQYAGE--K 168
Query: 226 HKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNE----KYFKDSMGN 281
            +  YR+   GP  + T +H D   + +W+  + G K+W L          K  +D  GN
Sbjct: 169 RRPPYRWFVXGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGN 228
Query: 282 LISDMRSVDWSTL--PRDTV---------IIVEQEAGDSIFVPSGWHHQVTNLEHTISIN 330
              +  ++ W  +  PR  +         + + Q+ G+++FVP GW H V NL+ TI+I 
Sbjct: 229 QQDE--AITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAIT 286
Query: 331 HNWINGTNIDHVYHEMV 347
            N+ + TN   V+H+ V
Sbjct: 287 QNFASSTNFPVVWHKTV 303

>pdb|1WGE|A Chain A, Solution Structure Of The Mouse Desr1 Length = 83

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 25 PCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          PCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 32 PCPCGDNFAITKEDLENGEDVATCPSCSLIIK 63

>pdb|2JR7|A Chain A, Solution Structure Of Human Desr1 Length = 89

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 25 PCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          PCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 25 PCPCGDNFSITKEDLENGEDVATCPSCSLIIK 56

>pdb|1YOP|A Chain A, The Solution Structure Of Kti11p Length = 83

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 25 PCPCGDRFQITKEQLKAGEDVATCPTCSLII 55
          PCPCGDRFQI  + +  GE VA CP+CSL+I
Sbjct: 25 PCPCGDRFQIYLDDMFEGEKVAVCPSCSLMI 55

>pdb|1YWS|A Chain A, Solution Structure Of Ybl071w-A From Saccharomyces Cerevisiae Length = 82

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 25 PCPCGDRFQITKEQLKAGEDVATCPTCSLII 55
          PCPCGDRFQI  + +  GE VA CP+CSL+I
Sbjct: 24 PCPCGDRFQIYLDDMFEGEKVAVCPSCSLMI 54

>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex With N-Oxalylglycine Length = 488

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 162 TNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSS-DWLNEYY 220
           + MTL  Y  Y+ N    K+     L +        D K  ++  VP++     W+  Y+
Sbjct: 203 SKMTLHNYVKYFMNPNRPKVLNVISLEF-------SDTKMSELVEVPDIAKKLSWVENYW 255
Query: 221 SEHLEHKDDY--RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFK-D 277
            +       +  ++  MG ++++T  H D   +  W   + G K + L+ P +E   + +
Sbjct: 256 PDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYE 315
Query: 278 SMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGT 337
           S  + ++         + +    +V+Q  G ++FVP+GW H V   +  ++   N+++  
Sbjct: 316 SWSSSVTQSEVFFGDKVDKCYKCVVKQ--GHTLFVPTGWIHAVLTSQDCMAFGGNFLHNL 373
Query: 338 NI 339
           NI
Sbjct: 374 NI 375

>pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain Length = 397

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 162 TNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSS-DWLNEYY 220
           + MTL  Y  Y+ N    K+     L +        D K  ++  VP++     W+  Y+
Sbjct: 112 SKMTLHNYVKYFMNPNRPKVLNVISLEF-------SDTKMSELVEVPDIAKKLSWVENYW 164
Query: 221 SEHLEHKDDY--RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFK-D 277
            +       +  ++  MG ++++T  H D   +  W   + G K + L+ P +E   + +
Sbjct: 165 PDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYE 224
Query: 278 SMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGT 337
           S  + ++         + +    +V+Q  G ++FVP+GW H V   +  ++   N+++  
Sbjct: 225 SWSSSVTQSEVFFGDKVDKCYKCVVKQ--GHTLFVPTGWIHAVLTSQDCMAFGGNFLHNL 282
Query: 338 NI 339
           NI
Sbjct: 283 NI 284

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	7e-54
3uyj_A	248	Lysine-specific demethylase 8; jellyroll-like all	5e-49
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	4e-41
3kv5_D	488	JMJC domain-containing histone demethylation prote	5e-41
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	5e-41
3kv9_A	397	JMJC domain-containing histone demethylation prote	3e-38
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	6e-37
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	6e-36
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	7e-35
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	9e-34
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	4e-30
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	5e-30
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	2e-29
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	3e-29
2xxz_A	332	Lysine-specific demethylase 6B; oxidoreductase, hi	6e-11
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	9e-10
4ask_A	510	Lysine-specific demethylase 6B; oxidoreductase, KD	9e-09
3avr_A	531	Lysine-specific demethylase 6A; cupin superfamily,	2e-08
4diq_A	489	Lysine-specific demethylase NO66; structural genom	1e-07
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	3e-07
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336

 Score =  182 bits (463), Expect = 7e-54
 Identities = 59/290 (20%), Positives = 110/290 (37%), Gaps = 38/290 (13%)

Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHE 160
              +    KP +L +    W++   W        E L   Y + +      N        
Sbjct: 61  VERYERPYKPVVLLNAQEGWSAQEKW------TLERLKRKYRNQKFKCGEDND-----GY 109

Query: 161 KTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHF---TRDFKTEDIYRVPNVFSSDWLN 217
              M +K Y  Y ++      +  +   Y+ D  +    +  K  + Y+VP  F+ D   
Sbjct: 110 SVKMKMKYYIEYMES------TRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQ 163

Query: 218 EYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYF-- 275
               +    +  YR+  MGP  + T +H D   + +W+  + G K+W L      +    
Sbjct: 164 YAGEKR---RPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIK 220

Query: 276 --KDSMGNLISDMRSVDWSTLPRD---------TVIIVEQEAGDSIFVPSGWHHQVTNLE 324
             +D  GN   +  +      PR            + + Q+ G+++FVP GW H V NL+
Sbjct: 221 VTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLD 280

Query: 325 HTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLML 374
            TI+I  N+ + TN   V+H+ V     + ++    + +        ++ 
Sbjct: 281 TTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWY--RILKQEHPELAVLA 328

>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold, nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB: 4aap_A* Length = 248

 Score =  166 bits (423), Expect = 5e-49
 Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 31/242 (12%)

Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHE 160
              FL   +P ILK   + W     W      + EY+    G   VPV   + Y      
Sbjct: 28  REQFLVPGRPVILKGVADHWPCMQKW------SLEYIQEIAGCRTVPVEVGSRYTDEEWS 81

Query: 161 KTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKT-EDIYRVPNVFSSDWLNEY 219
           +T MT+ E+   +        +E   + YL            +    +P+  S     E 
Sbjct: 82  QTLMTVNEFISKYIV------NEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEE- 134

Query: 220 YSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSM 279
                  ++     + GP+ T +PLH D   +  + V + GRK   L +P          
Sbjct: 135 -------EEITINAWFGPQGTISPLHQDPQQN--FLVQVMGRKYIRLYSPQESGALYPHD 185

Query: 280 GNLISDMRSVDWST--------LPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINH 331
            +L+ +   VD             +   +      G+ +F+P  + H V  L+ + S++ 
Sbjct: 186 THLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSF 245

Query: 332 NW 333
            W
Sbjct: 246 WW 247

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371

 Score =  149 bits (377), Expect = 4e-41
 Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 19/234 (8%)

Query: 145 EVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDI 204
           E+ V +             M L ++  Y+ +         E +  +    F+ D +  ++
Sbjct: 72  EIDVIDVTR-----QADCKMKLGDFVKYYYSGKR------EKVLNVISLEFS-DTRLSNL 119

Query: 205 YRVPNVFSS-DWLNEYYSEHLEHK--DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGR 261
              P +     W+   + E    +  +  ++  M  ++++T  H D   +  W   + G 
Sbjct: 120 VETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGE 179

Query: 262 KQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVT 321
           K + L+ P N         +  S  ++  +     D       + G ++F+P+GW H V 
Sbjct: 180 KIFYLIRPTNANLTLFECWSS-SSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVL 238

Query: 322 NLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQ 375
                ++   N+++  NI+         +E  +    D     ++ + C  + +
Sbjct: 239 TPVDCLAFGGNFLHSLNIEMQLKAY--EIE-KRLSTADLFRFPNFETICWYVGK 289

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488

 Score =  152 bits (383), Expect = 5e-41
 Identities = 47/291 (16%), Positives = 97/291 (33%), Gaps = 19/291 (6%)

Query: 89  YNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPV 148
             I            +L K+   +        +  L          +      GD  + V
Sbjct: 135 DEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDV 194

Query: 149 ANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVP 208
            +           + MTL  Y  Y+ N           +  +    F+ D K  ++  VP
Sbjct: 195 IDVAR-----QADSKMTLHNYVKYFMN------PNRPKVLNVISLEFS-DTKMSELVEVP 242

Query: 209 NVFSS-DWLNEYYSEHLEHK--DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWL 265
           ++     W+  Y+ +          ++  MG ++++T  H D   +  W   + G K + 
Sbjct: 243 DIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFY 302

Query: 266 LLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEH 325
           L+ P +E   +    +  S  +S  +     D       + G ++FVP+GW H V   + 
Sbjct: 303 LIKPTDENLARYESWSS-SVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQD 361

Query: 326 TISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQV 376
            ++   N+++  NI              + +  D      + + C  + + 
Sbjct: 362 CMAFGGNFLHNLNIGMQLRCYEMEK---RLKTPDLFKFPFFEAICWFVAKN 409

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Length = 338

 Score =  148 bits (375), Expect = 5e-41
 Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 20/247 (8%)

Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHE 160
             +   + KP +L+  ++    +  W        +YLS   G  EV +        +   
Sbjct: 43  MQHLYPQRKPLVLEG-IDLGPCTSKW------TVDYLSQVGGKKEVKIHVAAVAQMDFIS 95

Query: 161 K----TNMTLKEYTIYWQNKIDGKLSETE-PLYYLKDWHFTRDFKTEDIYRVPNVFSSDW 215
           K      +   +       +   +   +E   YYL+           DI +   +   D 
Sbjct: 96  KNFVYRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFPLLKGDI 155

Query: 216 LNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYF 275
               +    E +       +         H DV  +    + + G+K+ +L +P + +Y 
Sbjct: 156 KFPEF--FKEEQFFSSVFRISSPGLQLWTHYDVMDN--LLIQVTGKKRVVLFSPRDAQYL 211

Query: 276 KDSMGNL-ISDMRSVDWSTLPR---DTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINH 331
                   + ++ + D +  P            EAGD +F+P+ W H V + E  + +N 
Sbjct: 212 YLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNI 271

Query: 332 NWINGTN 338
            W +  +
Sbjct: 272 FWKHLPS 278

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397

 Score =  142 bits (359), Expect = 3e-38
 Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 19/240 (7%)

Query: 108 NKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLK 167
           + P ++    +     L          +      GD  + V +           + MTL 
Sbjct: 66  DVPIMVPKLDD---LGLRLPSPTFSVMDVERYVGGDKVIDVIDVAR-----QADSKMTLH 117

Query: 168 EYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSS-DWLNEYYSEHLEH 226
            Y  Y+ N           +  +    F+ D K  ++  VP++     W+  Y+ +    
Sbjct: 118 NYVKYFMNP------NRPKVLNVISLEFS-DTKMSELVEVPDIAKKLSWVENYWPDDSVF 170

Query: 227 K--DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLIS 284
                 ++  MG ++++T  H D   +  W   + G K + L+ P +E   +    +  S
Sbjct: 171 PKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSS-S 229

Query: 285 DMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYH 344
             +S  +     D       + G ++FVP+GW H V   +  ++   N+++  NI     
Sbjct: 230 VTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLR 289

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Length = 349

 Score =  137 bits (346), Expect = 6e-37
 Identities = 44/284 (15%), Positives = 94/284 (33%), Gaps = 36/284 (12%)

Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFN-AH 159
               +   +P +L      +  +L W      + EYL  + G+ +  V + +++ F    
Sbjct: 52  AEELIENEEPVVLTDTNLVY-PALKW------DLEYLQENIGNGDFSVYSASTHKFLYYD 104

Query: 160 EKTNMTLKEYTIYWQNK-----------IDGKLSETEPLYYLKDWHFTRDFKTEDIYRVP 208
           EK     + +      +            D +    E   YL       D     I    
Sbjct: 105 EKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYL--QQTLNDTVGRKIVMDF 162

Query: 209 NVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLA 268
             F+ +W+N+   +    +     + +G +   TP H     +  +   I G K+ +L  
Sbjct: 163 LGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYGEQQN--FFAQIKGYKRCILFP 220

Query: 269 PGNEKYFKDSMGNLISDMRSV---------DWSTLPRDTVIIVEQEAGDSIFVPSGWHHQ 319
           P   +       +   D +S           +               GD +++P  W H 
Sbjct: 221 PDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHH 280

Query: 320 VTNLEH---TISINHNWINGTNIDHVYHEMVSHL-EAVKKEIDD 359
           + +L +   TI++N  +        + + + +H   A+ + I+ 
Sbjct: 281 IESLLNGGITITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEK 324

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447

 Score =  137 bits (344), Expect = 6e-36
 Identities = 49/365 (13%), Positives = 111/365 (30%), Gaps = 34/365 (9%)

Query: 14  EYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLMLSDSCNS 73
           E   D + Y+ P           ++ +             +   S      L      +S
Sbjct: 40  EKAADIDLYHCPNCEVLHGPSIMKKRRGSSKGHDTHKGKPVKTGSPTFVRELRSRTFDSS 99

Query: 74  NEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPN 133
           +E I   T     V++  + S   P                            +    P+
Sbjct: 100 DEVILKPTGNQLTVEFLEENSFSVPILVLKK--------------------DGLGMTLPS 139

Query: 134 FEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDW 193
             +               +           M L ++  Y+ +         E +  +   
Sbjct: 140 PSFTVRDVEHYVGSDKEIDVIDVTRQADCKMKLGDFVKYYYSGKR------EKVLNVISL 193

Query: 194 HFTRDFKTEDIYRVPNVFSS-DWLNEYYSEHL--EHKDDYRFVYMGPKETWTPLHADVFH 250
            F+ D +  ++   P +     W+   + E    E  +  ++  M  ++++T  H D   
Sbjct: 194 EFS-DTRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGG 252

Query: 251 SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSI 310
           +  W   + G K + L+ P N         +  S+ ++  +     D       + G ++
Sbjct: 253 TSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSN-QNEMFFGDQVDKCYKCSVKQGQTL 311

Query: 311 FVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHC 370
           F+P+GW H V      ++   N+++  NI+         +E  +    D     ++ + C
Sbjct: 312 FIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLK--AYEIE-KRLSTADLFRFPNFETIC 368

Query: 371 QLMLQ 375
             + +
Sbjct: 369 WYVGK 373

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392

 Score =  132 bits (334), Expect = 7e-35
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 25/243 (10%)

Query: 108 NKPFILKS---CVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNM 164
            +P ++           +   +V +        +    +  V V +         +   M
Sbjct: 65  TEPILVPKKDGLGLAVPAPTFYVSD------VENYVGPERSVDVTDVTK-----QKDCKM 113

Query: 165 TLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSS-DWLNEYYSEH 223
            LKE+  Y+ +      +  + +  + +  F  D +       P++     W+  Y+ + 
Sbjct: 114 KLKEFVDYYYS------TNRKRVLNVTNLEF-SDTRMSSFVEPPDIVKKLSWVENYWPDD 166

Query: 224 LEHK--DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGN 281
                    ++  +  K+++T  H D   + +W   + G K + L+ P +          
Sbjct: 167 ALLAKPKVTKYCLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWR 226

Query: 282 LISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDH 341
             +   S  +     D       + G ++F+PSGW +        ++   ++++  +++ 
Sbjct: 227 S-ASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEM 285

Query: 342 VYH 344
              
Sbjct: 286 QMR 288

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451

 Score =  131 bits (329), Expect = 9e-34
 Identities = 43/266 (16%), Positives = 83/266 (31%), Gaps = 44/266 (16%)

Query: 133 NFEYLSNHYG-DIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLK 191
               +    G    V V + N+      +   MT+ ++T Y++   +          Y  
Sbjct: 94  TVNDVKMCVGSRRMVDVMDVNT-----QKGIEMTMAQWTRYYETPEEE-----REKLYNV 143

Query: 192 DWHFTRDFKTEDIYRVPNVFSS-DWLNEYYSEHLEHKDD--------------YRFVYMG 236
                   + E++ + P+     DW++  +  HL+                   ++  M 
Sbjct: 144 ISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMS 203

Query: 237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNE---KYFKDSMGNLISDMRSVDWST 293
            +  +T  H D   +  W     G K + L+ P       Y    +     D+   D   
Sbjct: 204 VRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDR-- 261

Query: 294 LPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAV 353
                   +E + G +  +PSGW H V     T+    N+++  NI          L+  
Sbjct: 262 --VSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPM-------QLKIY 312

Query: 354 KKEIDDCKDMD----DWTSHCQLMLQ 375
             E             +   C  +L+
Sbjct: 313 NIEDRTRVPNKFRYPFYYEMCWYVLE 338

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528

 Score =  121 bits (304), Expect = 4e-30
 Identities = 49/375 (13%), Positives = 110/375 (29%), Gaps = 37/375 (9%)

Query: 8   IEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLML 67
             +E FEY   ++   + CP          + K                  +       +
Sbjct: 73  SGLEQFEYYLYEK---FFCPKCVPHTGHSIRYKVVAPHRYRWYSPNEKHLGIEVGSKTWI 129

Query: 68  SDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWV 127
            D       +   T     +  +               +  K F++K      +     +
Sbjct: 130 EDFITRENTVPSPTDDEVCIVEDGYEFRREFEKLGGADNWGKVFMVKDM----DGLNMTM 185

Query: 128 QNKQPNFEYLSNHYG-DIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEP 186
                + E +    G D EV   +  +         +M L  +   +++  +        
Sbjct: 186 PKPGFDLEDVVKIMGSDYEVDTIDVYN-----QSTYSMKLDTFRKLFRDTKNRP-----L 235

Query: 187 LYYLKDWHFTRDFKTEDIYRVPN-VFSSDWLNEYYSEHLEHKDD---------------- 229
           LY      F+ + + ++I + P  V     +N  + +    +                  
Sbjct: 236 LYNFLSLEFSDNNEMKEIAKPPRFVQEISMVNRLWPDVSGAEYIKLLQREEYLPEDQRPK 295

Query: 230 -YRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRS 288
             +F   G   ++T  H D   S  +   + G K + + AP  + +          D  +
Sbjct: 296 VEQFCLAGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTT 355

Query: 289 VDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVS 348
             +  +    V  V  + G ++ +P+GW H V     ++    N+++  N++        
Sbjct: 356 W-FGDIANGAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYHL 414

Query: 349 HLEAVKKEIDDCKDM 363
                K+   + K  
Sbjct: 415 ENAIRKEIRSEEKFY 429

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A Length = 83

 Score =  110 bits (277), Expect = 5e-30
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 1  MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          M   +DEIEIED  ++ +++ + YPCPCGDRFQI  + +  GE VA CP+CSL+I 
Sbjct: 1  MVSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMID 56

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1 Length = 83

 Score =  109 bits (274), Expect = 2e-29
 Identities = 44/56 (78%), Positives = 51/56 (91%)

Query: 1  MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          M+V+HDE+EIEDF+YDED ETY+YPCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 8  MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIK 63

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens} Length = 89

 Score =  108 bits (272), Expect = 3e-29
 Identities = 44/56 (78%), Positives = 51/56 (91%)

Query: 1  MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          M+V+HDE+EIEDF+YDED ETY+YPCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 1  MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIK 56

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332

 Score = 62.5 bits (151), Expect = 6e-11
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 233 VYMGPKETWTPLHADVFHSYSWSVNIC-GRKQWLLLAPGNEKYFKDSMGNLISDMRSVDW 291
           +YM    + TP H +  +  S ++NI  G  +W  +     +           D  +  W
Sbjct: 205 LYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSW 264

Query: 292 STLPRD------TVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN 332
             +  D       V    Q  GD +++ +G  H V       +I  N
Sbjct: 265 WPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWN 311

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 56.4 bits (136), Expect = 9e-10
 Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 1   MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
           +     ++ +E+  ++E D ++Y  C CG ++ ++K++ +    + +C TCSLII+
Sbjct: 90  VGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEE-VSLISCDTCSLIIE 144

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510

 Score = 56.4 bits (135), Expect = 9e-09
 Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 20/158 (12%)

Query: 233 VYMGPKETWTPLHADVFHSYSWSVNICG-RKQWLLLAPGNEKYFKDSMGNLISDMRSVDW 291
           +YM    + TP H +  +  S ++NI     +W  +     +           D  +  W
Sbjct: 239 LYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSW 298

Query: 292 STLPRD------TVIIVEQEAGDSIFVPSGWHHQVTNLEHT--ISINHNWINGT------ 337
             +  D       V    Q  GD +++ +G  H V        I+ N   +         
Sbjct: 299 WPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLAL 358

Query: 338 -----NIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHC 370
                N       +V  +          K  D      
Sbjct: 359 ERYEWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKM 396

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 20/152 (13%)

Query: 233 VYMGPKETWTPLHADVFHSYSWSVNICG-RKQWLLLAPGNEKYFKDSMGNLISDMRSVDW 291
           +YM    + TP H +  +  S ++NI     +W ++  G      D       +     W
Sbjct: 264 LYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVLNDFCEKNNLNFLMGSW 323

Query: 292 STLPRD------TVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGT-------- 337
                D       V    Q  GD +++ +G  H V  +    +I  N    T        
Sbjct: 324 WPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQYKLAV 383

Query: 338 -----NIDHVYHEMVSHLEAVKKEIDDCKDMD 364
                N       +V  +        + K  D
Sbjct: 384 ERYEWNKLQSVKSIVPMVHLSWNMARNIKVSD 415

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} Length = 489

 Score = 52.6 bits (125), Expect = 1e-07
 Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 17/167 (10%)

Query: 236 GPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLP 295
            P       H D   +  + + + GRK W +  P        +    ++   S ++S   
Sbjct: 172 PPNSQGFAPHYDDIEA--FVLQLEGRKLWRVYRP-------RAPTEELALTSSPNFSQDD 222

Query: 296 RDTVII-VEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLE-AV 353
               ++    E GD ++ P G+ HQ    +   S+ H  ++    +     + + L  AV
Sbjct: 223 LGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSL-HLTLSTYQRNTWGDFLEAILPLAV 281

Query: 354 KKEIDDCKDM-----DDWTSHCQLMLQVSFGINFRQFFDMLKFICQK 395
           +  +++  +       D+  +       S       F + ++ +  +
Sbjct: 282 QAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVAR 328

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} Length = 442

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 20/145 (13%), Positives = 35/145 (24%), Gaps = 12/145 (8%)

Query: 215 WLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKY 274
            + E    +                   P H D    +     + G K W L  P     
Sbjct: 126 RIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFIL--QLEGEKHWRLYHPTVPLA 183

Query: 275 FKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWI 334
                        SV+        V     + GD ++ P G  HQ           H  I
Sbjct: 184 ----------REYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTI 233

Query: 335 NGTNIDHVYHEMVSHLEAVKKEIDD 359
           +    +     ++  +  +  +   
Sbjct: 234 STYQNNSWGDFLLDTISGLVFDTAK 258

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Length = 342

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 27/193 (13%), Positives = 48/193 (24%), Gaps = 15/193 (7%)

Query: 172 YWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDW-LNEYYSEHLEH---K 227
               + +G       +   +   +       +               E     L      
Sbjct: 81  AVIEESEGITDR-FLVSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGT 139

Query: 228 DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYF----KDSMGNLI 283
                VY          H D + +      I G K W L    N          S     
Sbjct: 140 SSKAIVYAAKNGGGFKAHFDAYTNLI--FQIQGEKTWKLAKNENVSNPMQHYDLSEAPYY 197

Query: 284 SDMRSVDWSTLPRD----TVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNI 339
            D     W   P         IV    G  +++P G  H   + + T+++N  +     +
Sbjct: 198 PDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWL 257

Query: 340 DHVYHEMVSHLEA 352
           D +   +   L +
Sbjct: 258 DLMLAALRKKLIS 270

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 87/619 (14%), Positives = 160/619 (25%), Gaps = 220/619 (35%)

Query: 4   YHDEIEI--EDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK-PSVI 60
           Y D + +  + F  + D         C D   + K  L   E          II     +
Sbjct: 18  YKDILSVFEDAFVDNFD---------CKDVQDMPKSILSKEE-------IDHIIMSKDAV 61

Query: 61  KSVMLMLSDSCNSNEQI--NVTTTALPQVDYN----------IDPSHI---YPYCFNNFL 105
              + +     +  E++        L +++Y             PS +   Y    +   
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 106 SKNKPFI------------LKSCVNEWN---------------SSL-------------- 124
           + N+ F             L+  + E                 + +              
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 125 ----HWV---QNKQPN--FEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQN 175
                W+       P    E L      I+    + + +  N   + +    E     ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 176 KIDGKLSETEPLYYLKD-WH------F---------TRDFKTEDI------YRVPNVFSS 213
           K          L  L +  +      F         TR  +  D         +     S
Sbjct: 241 K-----PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 214 DWLNEYYSEHLEHKDDYRFVYMG----PKETWT--PLHADVFHSYSWSVNICGRKQWLLL 267
             L     + L  K    ++       P+E  T  P    +  + S    +     W   
Sbjct: 296 MTLTPDEVKSLLLK----YLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNW--- 347

Query: 268 APGNEKYFKDSMGNLIS---------DMRS--VDWSTLPRDTVIIVEQEAGDSIFVPSG- 315
               +    D +  +I          + R      S  P    I            P+  
Sbjct: 348 ----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI------------PTIL 391

Query: 316 ----WHH-------QVTNLEHTIS-INHNWINGT-NIDHVYHEMVSHLEAV----KKEID 358
               W          V N  H  S +       T +I  +Y E+   LE      +  +D
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 359 -----DCKDMDD---------WTS----HCQLMLQVSFGINFRQ-FFDMLKFICQK-RLT 398
                   D DD         + S    H + +        FR  F D  +F+ QK R  
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHD 510

Query: 399 SLKNGTT---------IRLYGNWILSLDHTMFDLR------------------KASDVLK 431
           S     +         ++ Y  +I   +   ++                    K +D+L+
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 432 LCAQHEDWDLKLETNKLIE 450
           +    ED  +  E +K ++
Sbjct: 570 IALMAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	100.0
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	100.0
3kv5_D	488	JMJC domain-containing histone demethylation prote	100.0
3kv9_A	397	JMJC domain-containing histone demethylation prote	100.0
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	100.0
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	100.0
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	100.0
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	100.0
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	100.0
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	100.0
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	99.96
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	99.93
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	99.86
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	99.85
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	99.84
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	99.8
4diq_A	489	Lysine-specific demethylase NO66; structural genom	99.76
2ypd_A	392	Probable JMJC domain-containing histone demethyla	99.72
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.3
2xxz_A	332	Lysine-specific demethylase 6B; oxidoreductase, hi	99.07
3avr_A	531	Lysine-specific demethylase 6A; cupin superfamily,	99.02
4ask_A	510	Lysine-specific demethylase 6B; oxidoreductase, KD	98.62
3dxt_A	354	JMJC domain-containing histone demethylation PROT;	98.23
3opt_A	373	DNA damage-responsive transcriptional repressor R;	97.77
2ox0_A	381	JMJC domain-containing histone demethylation PROT;	97.68
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	95.94
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	95.45
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	95.2
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	95.07
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	95.06
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	95.04
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	94.94
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	94.69
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	94.6
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	94.46
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	94.31
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	94.25
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	94.24
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	94.21
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	94.17
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	94.13
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	94.07
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	94.04
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	94.0
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	94.0
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	93.73
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	93.67
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	93.58
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	93.53
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	93.52
3h8u_A	125	Uncharacterized conserved protein with double-STR	93.5
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	93.49
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	93.44
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	93.4
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	93.39
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	93.35
1v70_A	105	Probable antibiotics synthesis protein; structural	93.32
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	93.32
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	93.23
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	93.19
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	93.14
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	93.08
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	92.96
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	92.94
3uss_A	211	Putative uncharacterized protein; cupin, three his	92.82
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	92.72
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	92.64
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	92.55
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	92.54
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	92.48
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	92.3
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	92.24
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	92.22
4i4a_A	128	Similar to unknown protein; structural genomics, P	92.22
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	92.21
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	92.03
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	91.99
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	91.93
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	91.85
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	91.48
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	91.38
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	91.35
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	91.29
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	91.28
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	91.24
3bcw_A	123	Uncharacterized protein; structural genomics, join	90.95
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	90.64
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	90.53
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	90.48
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	90.43
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	90.33
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	90.26
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	90.01
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	89.98
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	89.83
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	89.74
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	89.6
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	89.33
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	89.14
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	88.65
2e2z_A	100	TIM15; protein import, zinc finger, protein transp	88.35
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	88.2
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	88.13
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	88.03
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	87.99
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	87.95
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	87.76
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	87.47
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	87.44
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	87.37
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	87.36
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	87.32
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	87.22
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	87.09
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	86.98
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	86.74
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	85.3
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	85.24
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	85.09
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	85.05
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	84.69
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	84.27
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	83.56
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	83.45
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	83.39
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	82.97
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	82.7
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	82.44
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	82.25
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	81.72
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	81.38
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	81.34
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	81.25
1sef_A	274	Conserved hypothetical protein; structural genomic	80.69
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	80.33

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=100.00  E-value=6.6e-47  Score=380.30  Aligned_cols=256  Identities=23%  Similarity=0.433  Sum_probs=210.7

Q ss_pred             ccccccccCcCCCCceeeCC-CCCHHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecC
Q psy12281         74 NEQINVTTTALPQVDYNIDP-SHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCN  152 (456)
Q Consensus        74 ~~~~~~~~~~~p~~I~ri~~-~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~  152 (456)
                      ++.+.+.....+..|+|++. .+|+++|.++|+.+++||||+|++++|||+++|+      ++||++++|+..|+|....
T Consensus        33 ~~~~~~~~~~~~~~I~Ri~~~~lS~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt------~~yL~~~~G~~~V~v~~~~  106 (336)
T 3k2o_A           33 YESFSLSPAAVADNVERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWT------LERLKRKYRNQKFKCGEDN  106 (336)
T ss_dssp             HHHCCCCGGGCCCCCCEEEGGGCCHHHHHHHTTTTTCCEEEESTTTTCTHHHHCS------HHHHHHHSTTCEEEEEECT
T ss_pred             hhhhhhchhhcCCCCCEecCCCCCHHHHHHHhhccCCCEEEeCCcCCChhHhhhh------HHHHHHHhCCceEEEEecC
Confidence            34444333346789999974 8999999999999999999999999999999995      7999999999999987532


Q ss_pred             cccccCCceEEeeHHHHHHHHHhcccCCCCCCCCeeeeecccccc--CCCCC-cccccCcccCcchhhHhhhhhccCCCc
Q psy12281        153 SYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTR--DFKTE-DIYRVPNVFSSDWLNEYYSEHLEHKDD  229 (456)
Q Consensus       153 ~~~y~~~~~~~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~--~~p~l-~~y~~P~~f~~D~ln~~~~~~~~~~~~  229 (456)
                           .+....|+|++|++++.+..      +..++||+++++..  .+|+| .+|.+|.+|.+|+++ ++....  +++
T Consensus       107 -----~~~~~~m~~~~fl~~~~~~~------~~~~lYL~d~~~~e~~~~p~L~~dy~~P~~f~~d~~~-~~~~~~--~p~  172 (336)
T 3k2o_A          107 -----DGYSVKMKMKYYIEYMESTR------DDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQ-YAGEKR--RPP  172 (336)
T ss_dssp             -----TSCEEEEEHHHHHHHHHHCC------CSSCCCEEESCGGGSTTGGGGGGGCCCCGGGCCCGGG-GGCTTT--SCC
T ss_pred             -----CCceeeecHHHHHHHHHhcC------CCCCceEecccccccccchhHHHhcCCCcccccchhh-hccccc--CCC
Confidence                 23467999999999998753      25689999998864  47888 589999999999885 333222  678


Q ss_pred             cceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCC---Ccc----cc---CCCcc--cCCCCC-
Q psy12281        230 YRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMG---NLI----SD---MRSVD--WSTLPR-  296 (456)
Q Consensus       230 ~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g---~~p----~d---~~~pd--~~~fp~-  296 (456)
                      ++++|||++||+|++|+|+.++.+|++||.|+|+|+||||.+...||....   ...    ++   ...|.  ..+||. 
T Consensus       173 ~~~~~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~  252 (336)
T 3k2o_A          173 YRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPE  252 (336)
T ss_dssp             CEEEEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGG
T ss_pred             ceEEEECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhccccc
Confidence            999999999999999999999999999999999999999999988886431   111    00   11121  123443 


Q ss_pred             CceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCHHHHHHHHHHH
Q psy12281        297 DTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSH  349 (456)
Q Consensus       297 ~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~~~~~~l~~~  349 (456)
                      +++++|+|+|||+||||+||||+|.|+++||+||+||++..|+..+|+.+...
T Consensus       253 ~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~~  305 (336)
T 3k2o_A          253 FKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRG  305 (336)
T ss_dssp             GCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHHH
T ss_pred             CceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHhh
Confidence            78999999999999999999999999999999999999999999999998654

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=100.00  E-value=1.2e-46  Score=359.14  Aligned_cols=225  Identities=21%  Similarity=0.338  Sum_probs=188.5

Q ss_pred             CceeeCCCCCHHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCcccccCCceEEeeH
Q psy12281         87 VDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTL  166 (456)
Q Consensus        87 ~I~ri~~~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~~~y~~~~~~~m~l  166 (456)
                      .|+|++ .+|+++|+++|+.+++||||+|++++|||+++|+      ++||++++|+..|+|..+............|+|
T Consensus         2 tipri~-~pS~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~------~~yL~~~~g~~~v~v~~~~~~~~~~~~~~~~~~   74 (235)
T 4gjz_A            2 TVPRLH-RPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS------LEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTV   74 (235)
T ss_dssp             BCCEEE-SCCHHHHHHHTTTTTCCEEEESSSTTSHHHHHCS------HHHHHHHHTTSEEEEEEC-------CEEEEEEH
T ss_pred             CCCCCC-CCCHHHHHHHHhcCCCcEEEeCCCcCCcccccCC------HHHHHHHcCCCeEEEEecCcccCCccceeeccH
Confidence            589996 7999999999999999999999999999999995      799999999999999876554444455788999


Q ss_pred             HHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCC-cccccCcccCcchhhHhhhhhccCCCccceeeeCCCCCccccc
Q psy12281        167 KEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTE-DIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLH  245 (456)
Q Consensus       167 ~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l-~~y~~P~~f~~D~ln~~~~~~~~~~~~~~~l~iG~~gs~T~lH  245 (456)
                      ++|++++....      ....+|+.++.+....|++ .++.+|.++..+...        ......++|||++||+|++|
T Consensus        75 ~~~~~~~~~~~------~~~~~y~~~~~~~~~~~~l~~d~~~p~~~~~~~~~--------~~~~~~~~wiG~~gs~t~~H  140 (235)
T 4gjz_A           75 NEFISKYIVNE------PRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGE--------EEEITINAWFGPQGTISPLH  140 (235)
T ss_dssp             HHHHHHHTSSC------CSSCEEEEEECHHHHCHHHHTTCCCCGGGGGSSSC--------GGGCEEEEEEECTTCEEEEE
T ss_pred             HHHHHHHhhcC------CcccceeehhhhhhhhHHHHHhhcCCccccccccc--------cCccceEEEEeCCCCCceee
Confidence            99999886543      3567899999988888887 577788765433211        13456789999999999999


Q ss_pred             ccccCccceeEEEEeEEEEEEeCCCCCcccccCCCC-----ccccCCCcccCCCCC---CceEEEEEcCCCEEEeCCCCe
Q psy12281        246 ADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGN-----LISDMRSVDWSTLPR---DTVIIVEQEAGDSIFVPSGWH  317 (456)
Q Consensus       246 ~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~-----~p~d~~~pd~~~fp~---~~~~~~~l~pGD~LfIPsgW~  317 (456)
                      +|+++|+  ++||.|+|+|+||||.+...||+....     ..+|..++|+++||+   +++++|+|+|||+||||+|||
T Consensus       141 ~D~~~n~--~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~LyiP~gW~  218 (235)
T 4gjz_A          141 QDPQQNF--LVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYW  218 (235)
T ss_dssp             CCSSEEE--EEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTTCEEEECTTCE
T ss_pred             eccccce--EEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCCCEEEeCCCCc
Confidence            9998875  999999999999999999999975322     257888899999875   899999999999999999999


Q ss_pred             EEEEeCCCcEEEEeecC
Q psy12281        318 HQVTNLEHTISINHNWI  334 (456)
Q Consensus       318 H~V~nl~~sIsvn~~~~  334 (456)
                      |+|+|+++|||||+||.
T Consensus       219 H~V~~l~~sisvn~w~s  235 (235)
T 4gjz_A          219 HYVRALDLSFSVSFWWS  235 (235)
T ss_dssp             EEEEESSSEEEEEEEEC
T ss_pred             EEEEECCCEEEEEEecC
Confidence            99999999999999983

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=100.00  E-value=1.7e-42  Score=362.76  Aligned_cols=297  Identities=18%  Similarity=0.280  Sum_probs=223.0

Q ss_pred             ceeeCC-CCCHHHHHHhhcCCCCcEEEecCC---CccccccccccCCCCChhHHHHHhC-CceEEEEecCcccccCCceE
Q psy12281         88 DYNIDP-SHIYPYCFNNFLSKNKPFILKSCV---NEWNSSLHWVQNKQPNFEYLSNHYG-DIEVPVANCNSYYFNAHEKT  162 (456)
Q Consensus        88 I~ri~~-~ls~~~F~~~y~~~~~PvVi~g~~---~~Wpa~~~Wt~~~~~~~d~L~~~~G-d~~V~V~~~~~~~y~~~~~~  162 (456)
                      |.+++. +++.+-|.+..  -++|+||++..   ..||+ .+|+      ++++++.+| +..|+|.++.     ++...
T Consensus       138 v~~~~~~~~~~~~~~~~~--~~~Pvli~~~~~lg~~~P~-~~~t------~~~v~~~~G~d~~V~V~Dv~-----~Q~~~  203 (488)
T 3kv5_D          138 IIKMHGSQLTQRYLEKHG--FDVPIMVPKLDDLGLRLPS-PTFS------VMDVERYVGGDKVIDVIDVA-----RQADS  203 (488)
T ss_dssp             CEECCGGGCCHHHHHHHC--SCSCEEECSCTTTCCBCCC-TTCC------HHHHHHHHCTTCEEEEEETT-----TTEEE
T ss_pred             eeccccccchHHHHHhcC--CCCCEEEecCCCcCCcCCC-CCCc------HHHHHHHhCCCceeeeeecC-----ccccc
Confidence            444433 55555443322  38999999865   47999 7895      899999999 8999999886     44568


Q ss_pred             EeeHHHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCCcccccCcccCc-chhhHhhhhhccC-C-CccceeeeCCCC
Q psy12281        163 NMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSS-DWLNEYYSEHLEH-K-DDYRFVYMGPKE  239 (456)
Q Consensus       163 ~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l~~y~~P~~f~~-D~ln~~~~~~~~~-~-~~~~~l~iG~~g  239 (456)
                      +|+|++|++|+++..      ....+|+.++++... +-...|.+|.+|.+ ||++.+|...... + ...+|+|||++|
T Consensus       204 ~m~l~~yi~y~~~~~------r~~~~nv~slefs~~-~L~~~~~~P~~~~~~d~~~~~wp~~~~~~rP~~~r~~~mG~~g  276 (488)
T 3kv5_D          204 KMTLHNYVKYFMNPN------RPKVLNVISLEFSDT-KMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQD  276 (488)
T ss_dssp             EEEHHHHHHHHHSSS------CSSCEEEEEEECTTS-GGGGGCBCCHHHHHHCHHHHHCCTTCSSCCCCCSCEEEEECTT
T ss_pred             cccHHHHHHHHhccC------Ccccccccccccccc-hhhccCCCChhhhhhchhhhcCcccccccCcccceEEEEcCCC
Confidence            999999999998753      357899999988753 32258999999954 8999887542211 2 246999999999


Q ss_pred             CcccccccccCccceeEEEEeEEEEEEeCCCCCc-ccccCCCCccccCCCcccCCCC---CCceEEEEEcCCCEEEeCCC
Q psy12281        240 TWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEK-YFKDSMGNLISDMRSVDWSTLP---RDTVIIVEQEAGDSIFVPSG  315 (456)
Q Consensus       240 s~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~-~Ly~~~g~~p~d~~~pd~~~fp---~~~~~~~~l~pGD~LfIPsg  315 (456)
                      |+|++|+|++++++|++||+|+|+|+||||++.. .+|..     ++...++.+.|+   .+++++|+|+|||+||||+|
T Consensus       277 S~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~-----~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIPsG  351 (488)
T 3kv5_D          277 SYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYES-----WSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTG  351 (488)
T ss_dssp             CEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHH-----HHTCSSGGGSCGGGSSSCCEEEEEETTCEEEECTT
T ss_pred             CCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccc-----cccCCccchhhhcccccceEEEeeCCCCEEEeCCC
Confidence            9999999999999999999999999999998764 34431     222223333442   37899999999999999999


Q ss_pred             CeEEEEeCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHh
Q psy12281        316 WHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFICQK  395 (456)
Q Consensus       316 W~H~V~nl~~sIsvn~~~~~~~nl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~f~~~l~~~~~~  395 (456)
                      |||+|.|+++||+||+||++..|+..+|+...-                      +.+++...+..|-.|..++-+++++
T Consensus       352 WwH~V~nledsIai~~NF~~~~nl~~~l~~~~~----------------------e~~~~~~~~~~~p~f~~~~w~~~~~  409 (488)
T 3kv5_D          352 WIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEM----------------------EKRLKTPDLFKFPFFEAICWFVAKN  409 (488)
T ss_dssp             CEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHH----------------------HHHTTCCTTSSCTTHHHHHHHHHHH
T ss_pred             ceEEeeCCCCeEEEccccCCccCHHHHHHHHHH----------------------HHhcCCcccccCccHHHHHHHHHHH
Confidence            999999999999999999999999999986642                      2344555567777788888889998


Q ss_pred             hhhhcccCCccccccccccCccchhccHHHHHHHHHHhhcCC
Q psy12281        396 RLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLKLCAQHE  437 (456)
Q Consensus       396 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (456)
                      +|..+.......    . --+.+..--++.|...|+.....+
T Consensus       410 ~l~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~w~~~~  446 (488)
T 3kv5_D          410 LLETLKELREDG----F-QPQTYLVQGVKALHTALKLWMKKE  446 (488)
T ss_dssp             HHHHHHHHHSSS----C-CCCHHHHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHhcc----c-CCcHHHHHHHHHHHHHHHHHHhCc
Confidence            888775442211    0 112344556777777788776544

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=100.00  E-value=9.3e-42  Score=345.94  Aligned_cols=299  Identities=18%  Similarity=0.284  Sum_probs=231.8

Q ss_pred             CCceeeCC-CCCHHHHHHhhcCCCCcEEEecCC---CccccccccccCCCCChhHHHHHhC-CceEEEEecCcccccCCc
Q psy12281         86 QVDYNIDP-SHIYPYCFNNFLSKNKPFILKSCV---NEWNSSLHWVQNKQPNFEYLSNHYG-DIEVPVANCNSYYFNAHE  160 (456)
Q Consensus        86 ~~I~ri~~-~ls~~~F~~~y~~~~~PvVi~g~~---~~Wpa~~~Wt~~~~~~~d~L~~~~G-d~~V~V~~~~~~~y~~~~  160 (456)
                      ..|.+++. +++.+-|.+..  -++|+||++..   ..||+ .+|+      ++++++.+| +..|+|.++.     ++.
T Consensus        45 ~~v~~i~g~d~t~~y~~~~~--~~~Pvli~~~~glg~~~P~-~~~t------v~~v~~~vG~d~~V~ViDv~-----~Q~  110 (397)
T 3kv9_A           45 EIIIKMHGSQLTQRYLEKHG--FDVPIMVPKLDDLGLRLPS-PTFS------VMDVERYVGGDKVIDVIDVA-----RQA  110 (397)
T ss_dssp             GTCEECCTTTCCHHHHHHHC--SCSCEEESSCTTSCCBCCC-TTCC------HHHHHHHHTTTSEEEEEETT-----TTE
T ss_pred             HeeecCCHHHhhHHHHHhcC--CCCcEEEecCccccCcCCC-CCCC------HHHHHHHhCCCceEeeeecC-----ccc
Confidence            35888877 88888665443  57999999865   47999 7895      899999999 8999999986     445


Q ss_pred             eEEeeHHHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCCcccccCcccCc-chhhHhhhhhccC-C-CccceeeeCC
Q psy12281        161 KTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSS-DWLNEYYSEHLEH-K-DDYRFVYMGP  237 (456)
Q Consensus       161 ~~~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l~~y~~P~~f~~-D~ln~~~~~~~~~-~-~~~~~l~iG~  237 (456)
                      ..+|+|++|++|+++..      ...++|+.++++... +-...|.+|.+|.+ ||++.++...... + ..++|+|||+
T Consensus       111 ~~~M~l~~yv~Y~~~~~------r~~~lnvislefs~~-~L~~~~~~P~~v~d~Dwv~~~wp~~~~~~rP~v~r~l~mGp  183 (397)
T 3kv9_A          111 DSKMTLHNYVKYFMNPN------RPKVLNVISLEFSDT-KMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGV  183 (397)
T ss_dssp             EEEEEHHHHHHHHHCSS------CSSCEEEEEEECTTS-GGGGGCBCCHHHHHHCHHHHHCCTTCSSCCCCCSCEEEEEC
T ss_pred             CccccHHHHHHHHhccC------CCccceecchhhccc-hhccCcCCCceeeccchhhhcCCchhccCCccceeEEEEcC
Confidence            78999999999998763      367899999988754 32358999999995 9999987542211 2 3579999999


Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCc-ccccCCCCccccCCCcccCCC-C--CCceEEEEEcCCCEEEeC
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEK-YFKDSMGNLISDMRSVDWSTL-P--RDTVIIVEQEAGDSIFVP  313 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~-~Ly~~~g~~p~d~~~pd~~~f-p--~~~~~~~~l~pGD~LfIP  313 (456)
                      +||+|++|+|+.++.+|++||+|+|+|+|+||++.+ .+|..     ++...++.+.| +  .+++++|+|+|||+||||
T Consensus       184 ~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~-----~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfIP  258 (397)
T 3kv9_A          184 QDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYES-----WSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVP  258 (397)
T ss_dssp             TTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHH-----HHTSGGGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             CCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccc-----cccCCCcchhhhccccCceEEEEECCCCEEEeC
Confidence            999999999999999999999999999999999865 34432     11111112222 2  278999999999999999


Q ss_pred             CCCeEEEEeCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Q psy12281        314 SGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQVSFGINFRQFFDMLKFIC  393 (456)
Q Consensus       314 sgW~H~V~nl~~sIsvn~~~~~~~nl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~f~~~l~~~~  393 (456)
                      +||||+|.|+++||+|++||+++.|++.+|+...-                      +.+++...+..|-.|..++-+++
T Consensus       259 sGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~~----------------------E~~~k~~~~~~fp~F~~~~w~~a  316 (397)
T 3kv9_A          259 TGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEM----------------------EKRLKTPDLFKFPFFEAICWFVA  316 (397)
T ss_dssp             TTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHH----------------------HHHHTCGGGGGSTTHHHHHHHHH
T ss_pred             CCCeEEccCCcCeEEECCcccCchhHHHHHHHHHH----------------------HHhcCCCccCcCccHHHHHHHHH
Confidence            99999999999999999999999999999876542                      33566667778888999999999


Q ss_pred             HhhhhhcccCCccccccccccCccchhccHHHHHHHHHHhhcCC
Q psy12281        394 QKRLTSLKNGTTIRLYGNWILSLDHTMFDLRKASDVLKLCAQHE  437 (456)
Q Consensus       394 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (456)
                      ++++..+......+.     .-+.+..--++.|...|+.....+
T Consensus       317 ~~~l~~~~~~~~~~~-----~~~~~~~~g~~~l~~~~~~w~~~~  355 (397)
T 3kv9_A          317 KNLLETLKELREDGF-----QPQTYLVQGVKALHTALKLWMKKE  355 (397)
T ss_dssp             HHHHHHHHHHHTTTC-----CCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHHHHHHhcc
Confidence            999998855433210     112345556777778888766543

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=100.00  E-value=7.5e-40  Score=329.36  Aligned_cols=236  Identities=16%  Similarity=0.312  Sum_probs=189.9

Q ss_pred             CceeeCC-CCCHHHHHHhhcCCCCcEEEecCC---CccccccccccCCCCChhHHHHHhC-CceEEEEecCcccccCCce
Q psy12281         87 VDYNIDP-SHIYPYCFNNFLSKNKPFILKSCV---NEWNSSLHWVQNKQPNFEYLSNHYG-DIEVPVANCNSYYFNAHEK  161 (456)
Q Consensus        87 ~I~ri~~-~ls~~~F~~~y~~~~~PvVi~g~~---~~Wpa~~~Wt~~~~~~~d~L~~~~G-d~~V~V~~~~~~~y~~~~~  161 (456)
                      .|.+++. +++.+.|.+..  -++||||++..   ..||+. +|+      ++++++.+| +..|+|.++.     ++..
T Consensus        18 ~v~~i~~~d~t~~y~~~~~--~~~Pvli~~~~glg~~~P~~-~~t------v~~v~~~vG~d~~V~ViDv~-----~Q~~   83 (371)
T 3k3o_A           18 VILKPTGNQLTVEFLEENS--FSVPILVLKKDGLGMTLPSP-SFT------VRDVEHYVGSDKEIDVIDVT-----RQAD   83 (371)
T ss_dssp             TSBCCCTTTCCHHHHHHHT--TCSCEEESSCTTSCCBCCCT-TCC------HHHHHHHHCC-CEEEEEETT-----TTEE
T ss_pred             hcccCChhhCcHHHHHhcC--CCCCEEEecCcccCCcCCCC-CCC------HHHHHHHcCCCceEeeeecC-----cCCC
Confidence            4777766 78887776554  47899999755   479987 795      899999999 8999999885     4556


Q ss_pred             EEeeHHHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCC-cccccCcccCc-chhhHhhhhhcc-CCCc-cceeeeCC
Q psy12281        162 TNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTE-DIYRVPNVFSS-DWLNEYYSEHLE-HKDD-YRFVYMGP  237 (456)
Q Consensus       162 ~~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l-~~y~~P~~f~~-D~ln~~~~~~~~-~~~~-~~~l~iG~  237 (456)
                      .+|+|++|++|+++..      +..++|+.++++...  .| ..|.+|.+|.+ ||++.+|..... .+++ ++|+|||+
T Consensus        84 ~~M~l~~y~dY~~~~~------re~~lnv~d~efs~~--~L~~~~~~P~~~~d~d~~~~~wp~~~~~~rP~~~r~l~mGp  155 (371)
T 3k3o_A           84 CKMKLGDFVKYYYSGK------REKVLNVISLEFSDT--RLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSV  155 (371)
T ss_dssp             EEEEHHHHHHHHTCTT------CCSCEEEEEEECTTS--GGGGTCBCCHHHHHHCHHHHHSCSSCSSCCCCCSCEEEEEC
T ss_pred             ccccHHHHHHHHhccC------CCCceeeechhccch--hhhccccCCchhhhhhhhhhcCChhhhccCCCceeEEEEcC
Confidence            8999999999998753      367999999988754  24 58999999996 899988754321 2445 69999999


Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCcc-cccCCCCccccCCCcccCCC-C--CCceEEEEEcCCCEEEeC
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKY-FKDSMGNLISDMRSVDWSTL-P--RDTVIIVEQEAGDSIFVP  313 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~-Ly~~~g~~p~d~~~pd~~~f-p--~~~~~~~~l~pGD~LfIP  313 (456)
                      +||+|++|+|++++++|+++|+|+|+|+|+||++.+. +|..     +.....+.+.| +  .+++++|+|+|||+||||
T Consensus       156 ~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~-----~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIP  230 (371)
T 3k3o_A          156 RDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFEC-----WSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP  230 (371)
T ss_dssp             TTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHH-----HHTSTTGGGSCGGGTSSCCEEEEEETTCEEEEC
T ss_pred             CCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccc-----cccCCccchhhcccccCceEEEEECCCcEEEeC
Confidence            9999999999999999999999999999999998643 3331     11111111222 1  378999999999999999


Q ss_pred             CCCeEEEEeCCCcEEEEeecCCCCCHHHHHHHHHHH
Q psy12281        314 SGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSH  349 (456)
Q Consensus       314 sgW~H~V~nl~~sIsvn~~~~~~~nl~~~~~~l~~~  349 (456)
                      +||||+|.|+++||+|++||+++.|++.+|+...-+
T Consensus       231 sGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E  266 (371)
T 3k3o_A          231 TGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIE  266 (371)
T ss_dssp             TTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCeEEECCcccchhhHHHHHHHHHHH
Confidence            999999999999999999999999999999987644

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=100.00  E-value=2.9e-40  Score=333.72  Aligned_cols=231  Identities=17%  Similarity=0.305  Sum_probs=187.2

Q ss_pred             CCCCceeeCCCCCHHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCcc--ccc--CC
Q psy12281         84 LPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSY--YFN--AH  159 (456)
Q Consensus        84 ~p~~I~ri~~~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~~--~y~--~~  159 (456)
                      ....|+|++ .+|+++|.++|+.+++||||+| +.+|||.++|+      ++||++++|+..|+|..+...  .|.  ..
T Consensus        27 ~~~~I~r~~-~lS~~eF~~~y~~~~kPvVi~g-~~~wpa~~~Ws------~dyL~~~~g~~~V~v~~~~~~~~~~~~~~~   98 (338)
T 3al5_A           27 QHLPVPRLE-GVSREQFMQHLYPQRKPLVLEG-IDLGPCTSKWT------VDYLSQVGGKKEVKIHVAAVAQMDFISKNF   98 (338)
T ss_dssp             CCCBCCEEE-SCCHHHHHHHTGGGCCCEEEES-CCCCTHHHHCC------HHHHHHHHCSCEEEEEC----CCCC-CCCC
T ss_pred             CCCCCCEEC-CCCHHHHHHHhhcCCCeEEEeC-CCCCcccccCC------HHHHHHhhCCceEEEEEcCCCCcccccccc
Confidence            346799996 6999999999999999999999 88999999995      799999999999999754321  121  12


Q ss_pred             ceEEeeHHHHHHHHHhcccCC-CCCCCCeeeeeccc---------cccCCCCC-cccccCcccCcchhhHhhhhhccCCC
Q psy12281        160 EKTNMTLKEYTIYWQNKIDGK-LSETEPLYYLKDWH---------FTRDFKTE-DIYRVPNVFSSDWLNEYYSEHLEHKD  228 (456)
Q Consensus       160 ~~~~m~l~efl~~~~~~~~~~-~~~~~~~~Yl~d~~---------~~~~~p~l-~~y~~P~~f~~D~ln~~~~~~~~~~~  228 (456)
                      ....|+|++|++++....+.. .......+||+++.         +...+|+| .+|.+|.+|..|.+.           
T Consensus        99 ~~~~~~f~efl~~~~~~~~~~~l~~~~~~~Yl~~~~~~~~~~~~~l~~~~p~L~~d~~~P~~~~~d~~~-----------  167 (338)
T 3al5_A           99 VYRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFPLLKGDIKFPEFFKEEQFF-----------  167 (338)
T ss_dssp             CEEEEEHHHHHHHHHC-CCSSCSSCTTCCCEEECCCSSTTTCCCCHHHHCHHHHTTCCCCCCSCGGGEE-----------
T ss_pred             eeEEeEHHHHHHHHHhccccccccCCCcccchhhcccccccchhhHhHHCHHHHHhcCCCccccccccc-----------
Confidence            357899999999987654311 11235679999863         44556776 588899888765421           


Q ss_pred             ccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCc--cccCCCcccCCCCC---CceEEEE
Q psy12281        229 DYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNL--ISDMRSVDWSTLPR---DTVIIVE  303 (456)
Q Consensus       229 ~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~--p~d~~~pd~~~fp~---~~~~~~~  303 (456)
                       ..++|||++|++|++|+|+++|+  ++||.|+|+|+||||.+...||+. |..  .+|+.+||+++||+   +++++++
T Consensus       168 -~s~l~~g~~g~~~~~H~D~~~n~--~~qv~G~K~w~L~pP~~~~~ly~~-~~~~~~~d~~~~d~~~~p~~~~~~~~~~~  243 (338)
T 3al5_A          168 -SSVFRISSPGLQLWTHYDVMDNL--LIQVTGKKRVVLFSPRDAQYLYLK-GTKSEVLNIDNPDLAKYPLFSKARRYECS  243 (338)
T ss_dssp             -EEEEEEECTTCEEEEECCSSEEE--EEECSSCEEEEEECGGGGGGGTEE-TTEESCCCSSSCCTTTCTTGGGCCEEEEE
T ss_pred             -cceeEECCCCCCccceECCcccE--EEEEEEEEEEEEECcccccccccC-CCCcccccCCCcchhhCcccccCCCEEEE
Confidence             24799999999999999999865  999999999999999999999874 322  46888899988886   6799999


Q ss_pred             EcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCC
Q psy12281        304 QEAGDSIFVPSGWHHQVTNLEHTISINHNWINGT  337 (456)
Q Consensus       304 l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~  337 (456)
                      |+|||+||||+||||+|.|+++|||||+||.+..
T Consensus       244 L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~  277 (338)
T 3al5_A          244 LEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLP  277 (338)
T ss_dssp             ECTTCEEEECTTCEEEEEESSCEEEEEEEECSSC
T ss_pred             ECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCc
Confidence            9999999999999999999999999999999865

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=100.00  E-value=6.4e-40  Score=338.61  Aligned_cols=229  Identities=17%  Similarity=0.328  Sum_probs=183.4

Q ss_pred             CHHHHHHhhcCC---CCcEEEecCC---CccccccccccCCCCChhHHHHHhC-CceEEEEecCcccccCCceEEeeHHH
Q psy12281         96 IYPYCFNNFLSK---NKPFILKSCV---NEWNSSLHWVQNKQPNFEYLSNHYG-DIEVPVANCNSYYFNAHEKTNMTLKE  168 (456)
Q Consensus        96 s~~~F~~~y~~~---~~PvVi~g~~---~~Wpa~~~Wt~~~~~~~d~L~~~~G-d~~V~V~~~~~~~y~~~~~~~m~l~e  168 (456)
                      +.++|..+|+.+   ++|+||++..   ..||+. +|+      ++++++.+| +..|+|.++.     ++...+|+|++
T Consensus       107 ~g~~~~~~~~~~~~~~~Pvli~~~~glgm~~P~~-~~t------v~~v~~~~G~d~~V~ViDv~-----~Q~~~~M~l~~  174 (447)
T 3kv4_A          107 TGNQLTVEFLEENSFSVPILVLKKDGLGMTLPSP-SFT------VRDVEHYVGSDKEIDVIDVT-----RQADCKMKLGD  174 (447)
T ss_dssp             CTTTCCHHHHHHTTSCSCEEESSCTTSCCBCCCT-TCC------HHHHHHHHCTTCEEEEEETT-----TTEEEEEEHHH
T ss_pred             chhhchHHHHHhcCCCCCEEEecCcccCCcCCCc-cCC------HHHHHHHcCCCceEcceecC-----cCccccccHHH
Confidence            444554455544   8999999654   579987 785      799999999 8999999875     45578999999


Q ss_pred             HHHHHHhcccCCCCCCCCeeeeeccccccCCCCC-cccccCcccCc-chhhHhhhhhcc-CCC-ccceeeeCCCCCcccc
Q psy12281        169 YTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTE-DIYRVPNVFSS-DWLNEYYSEHLE-HKD-DYRFVYMGPKETWTPL  244 (456)
Q Consensus       169 fl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l-~~y~~P~~f~~-D~ln~~~~~~~~-~~~-~~~~l~iG~~gs~T~l  244 (456)
                      |++|+++..      +..++|+.++++...  .| .+|.+|.+|.+ ||++.+|..... .++ .++|+|||++||+|++
T Consensus       175 y~dy~~~~~------r~~~lnv~d~efs~~--~L~~~~~~P~~~~~~D~~~~lw~~~~~~~rP~v~r~~~mG~~gS~T~~  246 (447)
T 3kv4_A          175 FVKYYYSGK------REKVLNVISLEFSDT--RLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDF  246 (447)
T ss_dssp             HHHHHHSSC------CSSCEEEEEEECTTS--GGGGGCBCCHHHHHHCHHHHHCCSCTTSCCCCCSCEEEEECTTEEEEE
T ss_pred             HHHHHhccC------CCCceeecccccccc--hhhhccCCCceecccchhhhcccchhhccCCCceeEEEEeCCCCCCCe
Confidence            999998753      357999999998764  35 58999999985 899988753221 134 4999999999999999


Q ss_pred             cccccCccceeEEEEeEEEEEEeCCCCCcc-cccCCCCccccCCCcccCCC-C--CCceEEEEEcCCCEEEeCCCCeEEE
Q psy12281        245 HADVFHSYSWSVNICGRKQWLLLAPGNEKY-FKDSMGNLISDMRSVDWSTL-P--RDTVIIVEQEAGDSIFVPSGWHHQV  320 (456)
Q Consensus       245 H~D~~~~~sW~~~i~G~Krw~L~pP~~~~~-Ly~~~g~~p~d~~~pd~~~f-p--~~~~~~~~l~pGD~LfIPsgW~H~V  320 (456)
                      |+|++++++|+++|+|+|+|+|+||++... +|..     +....++.+.| +  .+++++|+|+|||+||||+||||+|
T Consensus       247 HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~-----~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIPsGWwH~V  321 (447)
T 3kv4_A          247 HIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFEC-----WSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAV  321 (447)
T ss_dssp             ECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHH-----HHTCSSGGGSCGGGGSSCCEEEEEETTCEEEECTTCEEEE
T ss_pred             eECCCCCceeEEEeeeEEEEEEeCCCcccccchhh-----cccCcchhhhhccccccceEEEEECCCcEEecCCCCeEEE
Confidence            999999999999999999999999997642 2211     11111222222 1  3789999999999999999999999


Q ss_pred             EeCCCcEEEEeecCCCCCHHHHHHHHHHH
Q psy12281        321 TNLEHTISINHNWINGTNIDHVYHEMVSH  349 (456)
Q Consensus       321 ~nl~~sIsvn~~~~~~~nl~~~~~~l~~~  349 (456)
                      .|+++||+|++||++..|++.+|+.+.-+
T Consensus       322 ~nledsIai~~NF~~~~nl~~~l~~~~~E  350 (447)
T 3kv4_A          322 LTPVDCLAFGGNFLHSLNIEMQLKAYEIE  350 (447)
T ss_dssp             EESSCEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred             ecCCCEEEEccccccccCHHHHHHHHHHH
Confidence            99999999999999999999999988754

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=100.00  E-value=4.1e-40  Score=340.41  Aligned_cols=239  Identities=17%  Similarity=0.271  Sum_probs=180.5

Q ss_pred             CCceeeCC-CCCHHHHHHhhcCCCCcEEEecCCCcccc---ccccccCCCCChhHHHHHhC-CceEEEEecCcccccCCc
Q psy12281         86 QVDYNIDP-SHIYPYCFNNFLSKNKPFILKSCVNEWNS---SLHWVQNKQPNFEYLSNHYG-DIEVPVANCNSYYFNAHE  160 (456)
Q Consensus        86 ~~I~ri~~-~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa---~~~Wt~~~~~~~d~L~~~~G-d~~V~V~~~~~~~y~~~~  160 (456)
                      ..|+|++. ++|+ +|+++ ..+++||||+|+ ++|||   .++|+      ++||++.+| +..|+|.++..     +.
T Consensus        52 ~~V~ri~~~~Ls~-EF~~~-~~~nkPVVIt~~-~~Wpa~~P~~kWt------~dyL~~~~G~d~~V~V~D~~~-----q~  117 (451)
T 2yu1_A           52 NFVTFMEGKDFNV-EYIQR-GGLRDPLIFKNS-DGLGIKMPDPDFT------VNDVKMCVGSRRMVDVMDVNT-----QK  117 (451)
T ss_dssp             CCCEECCGGGCSH-HHHHH-HCSCSCEEESSC-TTTTCBCCCTTCC------HHHHHHHTCTTCCCCCEETTS-----SC
T ss_pred             CceEecccccCCH-HHHHh-cCCCCcEEEccC-cCCCCcCCcCCCC------HHHHHHHcCCCceEeeEEcCC-----Cc
Confidence            67999977 8999 99988 579999999998 99999   78995      799999999 58999987643     33


Q ss_pred             eEEeeHHHHHHHHHhcccCCCCCCCCeeee-eccccccCCCCCc-ccccCcccCc-chhhHhhhhh------------c-
Q psy12281        161 KTNMTLKEYTIYWQNKIDGKLSETEPLYYL-KDWHFTRDFKTED-IYRVPNVFSS-DWLNEYYSEH------------L-  224 (456)
Q Consensus       161 ~~~m~l~efl~~~~~~~~~~~~~~~~~~Yl-~d~~~~~~~p~l~-~y~~P~~f~~-D~ln~~~~~~------------~-  224 (456)
                      ..+|+|++|++|+++..+     ++.++|+ .+++|....  +. .+..|.+..+ ||++.++...            + 
T Consensus       118 ~~~M~l~eyidy~~~~~d-----~r~~LY~v~sLeF~~~~--l~~~~~~P~l~~d~Dwv~~~~p~~l~~~~~d~f~~lge  190 (451)
T 2yu1_A          118 GIEMTMAQWTRYYETPEE-----EREKLYNVISLEFSHTR--LENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILE  190 (451)
T ss_dssp             CTTCCHHHHHHHHTSCTT-----TCCSCEEEEEECCTTST--TGGGCBCCHHHHHHCHHHHHSCGGGCC-----------
T ss_pred             ceeeeHHHHHHHHhhccc-----cccchhhhccccccccc--ccccccCchhhhhhhcccccCchhhhhhhhhhhhhccc
Confidence            568999999999987643     2356776 444443221  11 2333433221 3555444321            0 


Q ss_pred             cCCCcc-ceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCccc-ccCCCCccccCCCcccCCCCC--CceE
Q psy12281        225 EHKDDY-RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYF-KDSMGNLISDMRSVDWSTLPR--DTVI  300 (456)
Q Consensus       225 ~~~~~~-~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~L-y~~~g~~p~d~~~pd~~~fp~--~~~~  300 (456)
                      ..++++ +|+|||++||+|++|+|++++.+|++||+|+|+|+||||++...+ |... .  ......+ .-||.  .+++
T Consensus       191 ~~rP~~~r~~~mGp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~-~--~s~~q~~-~~~p~~~~~~~  266 (451)
T 2yu1_A          191 MQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENW-L--LSGSQGD-IFLGDRVSDCQ  266 (451)
T ss_dssp             CCSCCCCCEEEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHH-H--HTTCCSS-SCHHHHSSCCE
T ss_pred             ccCCchheEEEEccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccc-c--ccccchh-hhhccccccce
Confidence            125667 999999999999999999999999999999999999999997542 2210 0  0000000 01232  5789


Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCHHHHHHHHHHH
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSH  349 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~~~~~~l~~~  349 (456)
                      +|+|+|||+||||+||||+|.|+++||+|++||+++.|+..+|+++.-+
T Consensus       267 ~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~~E  315 (451)
T 2yu1_A          267 RIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIE  315 (451)
T ss_dssp             EEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHHHH
T ss_pred             EEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998754

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=100.00  E-value=8.4e-39  Score=324.18  Aligned_cols=232  Identities=17%  Similarity=0.278  Sum_probs=177.2

Q ss_pred             CCceeeCCCCCHHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCc--ccccC-----
Q psy12281         86 QVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNS--YYFNA-----  158 (456)
Q Consensus        86 ~~I~ri~~~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~--~~y~~-----  158 (456)
                      ..|+|++ .+|++ | ++|+.+++||||+|+..+||| ++|+      ++||++++|+..|+|..+..  ..|.+     
T Consensus        40 ~~I~Rv~-~~s~~-~-~~y~~~~~PVVi~g~~~~wpA-~kWt------~eyL~~~~G~~~V~V~~~~~~~~~y~d~~~~~  109 (349)
T 3d8c_A           40 RPIPRLS-QSDPR-A-EELIENEEPVVLTDTNLVYPA-LKWD------LEYLQENIGNGDFSVYSASTHKFLYYDEKKMA  109 (349)
T ss_dssp             EECCEEC-TTCHH-H-HHHHHTTCCEEESCCCTTGGG-GGCC------HHHHHHHSCSSCEEEEEESSSBCCCCCGGGTT
T ss_pred             CCceEec-CCChh-H-HHHhcCCccEEEeCCCCCccc-ccCC------HHHHHHhhCCCeEEEEECCCCccccccccccc
Confidence            5799996 67887 5 789999999999999999999 8995      79999999999999875432  12221     


Q ss_pred             -------C-ceEEeeHHHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCC-cccccCcccCcchhhHhhhhhccCCCc
Q psy12281        159 -------H-EKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTE-DIYRVPNVFSSDWLNEYYSEHLEHKDD  229 (456)
Q Consensus       159 -------~-~~~~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l-~~y~~P~~f~~D~ln~~~~~~~~~~~~  229 (456)
                             . .+..|+|++|++++.+....   .+...+||+++......|.+ .+|..   |..+|++.+....+ ..+.
T Consensus       110 ~~~~F~~~~~~~~m~~~efl~~~~~~~~~---~~~~~~YL~~~~~~~~~~~l~~D~~~---~~~~~~~~~~~~~~-~~~~  182 (349)
T 3d8c_A          110 NFQNFKPRSNREEMKFHEFVEKLQDIQQR---GGEERLYLQQTLNDTVGRKIVMDFLG---FNWNWINKQQGKRG-WGQL  182 (349)
T ss_dssp             SCTTCCCSEEEEEECHHHHHHHHHHHHHH---TCCCEEEEEEECCTTSCHHHHHHHHT---SCHHHHHHHHHHTT-CCCE
T ss_pred             ccccccccceeEeeEHHHHHHHHHhhccc---CCCCCeeeecccccccchhhhhhhhc---cchhhhhhhhhccc-cCcc
Confidence                   1 25799999999999875321   13468999987544333333 12211   23356554432221 1122


Q ss_pred             c-ceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCC------CccccCCCcccCCCCC---Cce
Q psy12281        230 Y-RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMG------NLISDMRSVDWSTLPR---DTV  299 (456)
Q Consensus       230 ~-~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g------~~p~d~~~pd~~~fp~---~~~  299 (456)
                      + .++|||++|++|++|+|+++|  |++||.|+|+|+||||.+...||+...      ...+|+.+||+++||+   +++
T Consensus       183 ~~~~l~iG~~gs~t~~H~D~~~n--~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~  260 (349)
T 3d8c_A          183 TSNLLLIGMEGNVTPAHYGEQQN--FFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVG  260 (349)
T ss_dssp             EECEEEEECTTCEEEEECCSEEE--EEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCE
T ss_pred             ccceEEEECCCCCccceECChhc--EEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCc
Confidence            2 469999999999999999964  599999999999999999988887532      2357778889988885   689


Q ss_pred             EEEEEcCCCEEEeCCCCeEEEEeCC---CcEEEEeecCCC
Q psy12281        300 IIVEQEAGDSIFVPSGWHHQVTNLE---HTISINHNWING  336 (456)
Q Consensus       300 ~~~~l~pGD~LfIPsgW~H~V~nl~---~sIsvn~~~~~~  336 (456)
                      ++++|+|||+||||+||||+|.|++   .|||||+||.+.
T Consensus       261 ~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~~~~  300 (349)
T 3d8c_A          261 YETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGA  300 (349)
T ss_dssp             EEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEECC
T ss_pred             EEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEcCCC
Confidence            9999999999999999999999998   389999999655

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=100.00  E-value=9.5e-39  Score=323.02  Aligned_cols=236  Identities=14%  Similarity=0.282  Sum_probs=186.2

Q ss_pred             CceeeCC-CCCHHHHHHhhcCCCCcEEEecCC---CccccccccccCCCCChhHHHHHhC-CceEEEEecCcccccCCce
Q psy12281         87 VDYNIDP-SHIYPYCFNNFLSKNKPFILKSCV---NEWNSSLHWVQNKQPNFEYLSNHYG-DIEVPVANCNSYYFNAHEK  161 (456)
Q Consensus        87 ~I~ri~~-~ls~~~F~~~y~~~~~PvVi~g~~---~~Wpa~~~Wt~~~~~~~d~L~~~~G-d~~V~V~~~~~~~y~~~~~  161 (456)
                      -|.+++. +++.+-|.+..  -++|+||++..   ..||+ .+|+      ++++++.+| +..|+|.++.     ++..
T Consensus        45 ~v~~~~g~~f~~~yl~~~g--~~~Pvli~~~~glgm~~P~-~~~t------v~~v~~~vG~d~~V~ViDv~-----~Q~~  110 (392)
T 3pua_A           45 VVARVPGSQLTLGYMEEHG--FTEPILVPKKDGLGLAVPA-PTFY------VSDVENYVGPERSVDVTDVT-----KQKD  110 (392)
T ss_dssp             TSEECCGGGCCHHHHHHHT--TCSCEEESSCTTTTCBCCC-TTCC------HHHHHHHHCTTCEEEEEETT-----TTEE
T ss_pred             eEecCChhhchHHHHHhcC--CCccEEEeCCccccCcCCC-CCCC------HHHHHHHcCCCcEEeeeecC-----cCcC
Confidence            3566654 56655443333  38999999755   58998 6795      899999999 8999999875     4557


Q ss_pred             EEeeHHHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCC-cccccCcccCc-chhhHhhhhhcc-CCC-ccceeeeCC
Q psy12281        162 TNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTE-DIYRVPNVFSS-DWLNEYYSEHLE-HKD-DYRFVYMGP  237 (456)
Q Consensus       162 ~~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l-~~y~~P~~f~~-D~ln~~~~~~~~-~~~-~~~~l~iG~  237 (456)
                      .+|+|++|++|+++..      +..++|+.++.+...  .| ..+..|.++.+ ||++.++..... .++ +++|+|||+
T Consensus       111 ~~M~l~~yv~Y~~~~~------re~~lnv~dlefs~t--~L~~~~~~P~lv~d~d~v~~~wp~~~~~~rP~v~r~~~mGp  182 (392)
T 3pua_A          111 CKMKLKEFVDYYYSTN------RKRVLNVTNLEFSDT--RMSSFVEPPDIVKKLSWVENYWPDDALLAKPKVTKYCLICV  182 (392)
T ss_dssp             EEEEHHHHHHHHTCSS------CCSCEEEEEEECTTS--GGGGGCBCCHHHHHHCHHHHHSCTTCSSCCCSCSCEEEEEC
T ss_pred             ccccHHHHHHHHhccC------CCcceEeeecccccc--hhhccccCchhhhhhhhhhhccchhhhhcCCCceeEEEEeC
Confidence            8999999999998763      368999999988754  24 47889988886 788877754321 134 499999999


Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCcc-cccCCCCccccCCCcccCCC-C--CCceEEEEEcCCCEEEeC
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKY-FKDSMGNLISDMRSVDWSTL-P--RDTVIIVEQEAGDSIFVP  313 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~-Ly~~~g~~p~d~~~pd~~~f-p--~~~~~~~~l~pGD~LfIP  313 (456)
                      +||+|++|+|++++.+|+++++|+|+|+|+||.+... +|..     ++....+.+.| +  ..++++|+|+|||+||||
T Consensus       183 ~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~-----~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIP  257 (392)
T 3pua_A          183 KDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYER-----WRSASNHSEMFFADQVDKCYKCIVKQGQTLFIP  257 (392)
T ss_dssp             TTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHH-----HHHSTTGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             CCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhh-----cccCcchhhhhhcccccceEEEEECCCcEEeeC
Confidence            9999999999999999999999999999999988642 2221     11111112222 1  268899999999999999


Q ss_pred             CCCeEEEEeCCCcEEEEeecCCCCCHHHHHHHHHHH
Q psy12281        314 SGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSH  349 (456)
Q Consensus       314 sgW~H~V~nl~~sIsvn~~~~~~~nl~~~~~~l~~~  349 (456)
                      +||||+|.|+++||+|++||+++.|++.+|+.++-+
T Consensus       258 sGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E  293 (392)
T 3pua_A          258 SGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVE  293 (392)
T ss_dssp             TTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCceEEEecCCCEEEEcCcccChhhHHHHHHHHHHH
Confidence            999999999999999999999999999999988754

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=99.96  E-value=3.8e-29  Score=259.26  Aligned_cols=200  Identities=18%  Similarity=0.327  Sum_probs=157.8

Q ss_pred             ChhHHHHHhC-CceEEEEecCcccccCCceEEeeHHHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCC-cccccCcc
Q psy12281        133 NFEYLSNHYG-DIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTE-DIYRVPNV  210 (456)
Q Consensus       133 ~~d~L~~~~G-d~~V~V~~~~~~~y~~~~~~~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l-~~y~~P~~  210 (456)
                      +++.+.+..| +..|.|-+..     ++....|+|++|++|+.+..     .....+++.++.+... +.| ..+++|.+
T Consensus       191 tv~dV~~~vG~d~~VdVIDV~-----tQ~~~~mtl~~~~~yf~~~~-----~R~~i~NviSLEfS~~-~~L~~~v~~P~~  259 (528)
T 3pur_A          191 DLEDVVKIMGSDYEVDTIDVY-----NQSTYSMKLDTFRKLFRDTK-----NRPLLYNFLSLEFSDN-NEMKEIAKPPRF  259 (528)
T ss_dssp             CHHHHHHHHCTTCEEEEEETT-----TTEEEEEEHHHHHHHHHCCS-----CCSSCEEECCEECTTS-TTHHHHSCCCHH
T ss_pred             CHHHHHHhhCCCceEeeEECC-----CCCCCcCcHHHHHHHhcCcc-----ccceeeEEeeEEecCc-hhhhccccCCcE
Confidence            4678888887 6889998764     45567899999999998742     1356788999988753 666 46889999


Q ss_pred             cCc-chhhHhhhhhc----------------cCCCc-cceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCC
Q psy12281        211 FSS-DWLNEYYSEHL----------------EHKDD-YRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNE  272 (456)
Q Consensus       211 f~~-D~ln~~~~~~~----------------~~~~~-~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~  272 (456)
                      +.+ ||++.+|+...                ..++. .+|++||++||+|.+|+|+.++.+|++++.|+|+|+|+||+..
T Consensus       260 Vr~ld~v~~~Wp~~~~~~~~~~~~~~~~~~~~~rP~v~rf~lmg~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~  339 (528)
T 3pur_A          260 VQEISMVNRLWPDVSGAEYIKLLQREEYLPEDQRPKVEQFCLAGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQ  339 (528)
T ss_dssp             HHHHCHHHHHSCCC-------------CCCGGGSCCCSSEEEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHH
T ss_pred             EecccHHHHhcCcccchhhhhhhhcccccccccCCCeeEEEEEeCCCCCCCeeECCCCCceeEEEecceEEEEEeCCCcc
Confidence            988 99999986421                01344 5999999999999999999999999999999999999999865


Q ss_pred             cc-cccCCCCccccCCCcccCCC-C---CCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCHHHHHHHHH
Q psy12281        273 KY-FKDSMGNLISDMRSVDWSTL-P---RDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMV  347 (456)
Q Consensus       273 ~~-Ly~~~g~~p~d~~~pd~~~f-p---~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~~~~~~l~  347 (456)
                      .. +|...     .. +++...| +   ....++|+|+|||+||||+||||+|.|+++||+|++||++..|++.+++...
T Consensus       340 nl~~y~~w-----~~-s~~~~~wfgd~l~~~~~~v~l~pGEtlfIPsGW~HaV~tleDSIaiggNFl~~~nl~~qlri~~  413 (528)
T 3pur_A          340 NFAAYQAH-----ET-SPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYH  413 (528)
T ss_dssp             HHHHHHHH-----HH-SSCCSCCGGGGTTTCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHHHH
T ss_pred             chhhhhhh-----cc-CCchhhhhcccccccEEEEEECCCCEEEecCCceEEEecCCCeEEEcCcccchhhHHHHHHHHH
Confidence            32 22210     00 1111112 1   2467899999999999999999999999999999999999999999999887


Q ss_pred             HH
Q psy12281        348 SH  349 (456)
Q Consensus       348 ~~  349 (456)
                      -+
T Consensus       414 iE  415 (528)
T 3pur_A          414 LE  415 (528)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=99.93  E-value=3.8e-25  Score=223.28  Aligned_cols=209  Identities=15%  Similarity=0.143  Sum_probs=133.4

Q ss_pred             eeeCCCCCHHHHHHhhcCCCCcEEEecCCCcc-ccccccccCCCCChhHHHHHhCC-----ceEEEEecC--cccccCCc
Q psy12281         89 YNIDPSHIYPYCFNNFLSKNKPFILKSCVNEW-NSSLHWVQNKQPNFEYLSNHYGD-----IEVPVANCN--SYYFNAHE  160 (456)
Q Consensus        89 ~ri~~~ls~~~F~~~y~~~~~PvVi~g~~~~W-pa~~~Wt~~~~~~~d~L~~~~Gd-----~~V~V~~~~--~~~y~~~~  160 (456)
                      +++ ..+|+++|+++|+ .++|+||+++ .+| ++  .|+      +++|.+.+++     ..|.+...+  ...|.. .
T Consensus        23 ~ll-~~is~e~F~~~yw-~kkPlvir~~-~~~~~~--l~s------~~~L~~l~~~~~v~~~~vrl~~~~~~~~~~~~-~   90 (342)
T 1vrb_A           23 SII-SPVTMSEFLEEYW-PVKPLVARGE-VERFTS--IPG------FEKVRTLENVLAIYNNPVMVVGDAVIEESEGI-T   90 (342)
T ss_dssp             HHH-TTSCHHHHHHHTT-TTSCEEECCC-GGGGGG--STT------CGGGSSHHHHHHHCCSCEEEC-------------
T ss_pred             HHH-cCCCHHHHHHHHh-ccCCEEEcCC-cccccC--CCC------HHHHHHHHhhcCcCcCceEEeCCCcCcccccc-C
Confidence            344 4899999999999 7899999998 665 43  343      2444433332     233432111  111221 1


Q ss_pred             eE-EeeHHHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCCcccccCcccCcchhhHhhhhhc--cCCCccceeeeCC
Q psy12281        161 KT-NMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHL--EHKDDYRFVYMGP  237 (456)
Q Consensus       161 ~~-~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l~~y~~P~~f~~D~ln~~~~~~~--~~~~~~~~l~iG~  237 (456)
                      .. .++.++|.+...+         ...+++.+  +....|++.          .+++.+....+  ........+|+|+
T Consensus        91 ~g~~~~~~~~~~l~~~---------g~tl~v~~--~~~~~p~l~----------~l~~~~~~~~~~~~~~n~~~~~~~gp  149 (342)
T 1vrb_A           91 DRFLVSPAEALEWYEK---------GAALEFDF--TDLFIPQVR----------RWIEKLKAELRLPAGTSSKAIVYAAK  149 (342)
T ss_dssp             -CEEECHHHHHHHHHT---------TCCEEECC--GGGTCTHHH----------HHHHHHHHHTTCCTTCCEEEEEEEEC
T ss_pred             CCcccCHHHHHHHHhC---------CCeEEECC--hhHhChHHH----------HHHHhhhhhcCCcccccccceEEEeC
Confidence            23 6788888776542         23356555  233445432          11111111001  0011134599999


Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEe-CCCCCcccccCC-C---CccccCCCcccCCCCC---CceEEEEEcCCCE
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLL-APGNEKYFKDSM-G---NLISDMRSVDWSTLPR---DTVIIVEQEAGDS  309 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~-pP~~~~~Ly~~~-g---~~p~d~~~pd~~~fp~---~~~~~~~l~pGD~  309 (456)
                      +|++|++|+|.++|+  .+||.|+|+|+|| ||.+...+|+.. +   ..|.|+..++.++||.   ++.++++|+|||+
T Consensus       150 ~g~~~~~H~D~~dnf--l~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~pGD~  227 (342)
T 1vrb_A          150 NGGGFKAHFDAYTNL--IFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTM  227 (342)
T ss_dssp             SSCCCCSEECSSEEE--EEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCE
T ss_pred             CCCCCCCeECChhcE--EEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEECCCcE
Confidence            999999999999988  9999999999999 898777777521 1   1244455566666764   7889999999999


Q ss_pred             EEeCCCCeEEEEeCC--CcEEEEee
Q psy12281        310 IFVPSGWHHQVTNLE--HTISINHN  332 (456)
Q Consensus       310 LfIPsgW~H~V~nl~--~sIsvn~~  332 (456)
                      ||||+||||+|.+++  .|++|+.+
T Consensus       228 LyiP~gwwH~v~s~~~~~slsvsi~  252 (342)
T 1vrb_A          228 LYLPRGLWHSTKSDQATLALNITFG  252 (342)
T ss_dssp             EEECTTCEEEEECSSCEEEEEEEEC
T ss_pred             EEeCCCccEEEEECCCCceEEEEEC
Confidence            999999999999994  48888877

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=99.86  E-value=2.9e-22  Score=160.25  Aligned_cols=65  Identities=69%  Similarity=1.280  Sum_probs=61.5

Q ss_pred             CceeeeEEeCCCccccCCCceEEEecCCCCcEEeehhhhhcCCcEEeCCCCcceEEEeeeehhhh
Q psy12281          1 MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVML   65 (456)
Q Consensus         1 ~~~~~~~~~l~d~~~~~~~~~~~~~CrCg~~f~i~~~~l~~~~~~~~C~~CSl~i~~~~~~~~~~   65 (456)
                      |+.||++|+|+||+++++++.|+|+|||||.|.|++++|++|+.+++|+||||+|+|.|...+..
T Consensus         1 m~~vydeV~LeDm~~de~~~~y~ypCrCGd~F~IteedLe~ge~iv~C~sCSL~IkV~y~~~~~~   65 (89)
T 2jr7_A            1 MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQFV   65 (89)
T ss_dssp             CCSCSCEEETTTSEEETTTTEEEEECTTSSEEEEEHHHHHHTCCEEECTTTCCEEEEECCHHHHC
T ss_pred             CCcceeEEEHHHcEEcCCCCEEEEcCCCCCEEEECHHHHhCCCEEEECCCCccEEEEEEcccccc
Confidence            78899999999999999999999999999999999999999999999999999999999766653

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=99.85  E-value=7.5e-22  Score=156.36  Aligned_cols=65  Identities=69%  Similarity=1.283  Sum_probs=61.4

Q ss_pred             CceeeeEEeCCCccccCCCceEEEecCCCCcEEeehhhhhcCCcEEeCCCCcceEEEeeeehhhh
Q psy12281          1 MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVML   65 (456)
Q Consensus         1 ~~~~~~~~~l~d~~~~~~~~~~~~~CrCg~~f~i~~~~l~~~~~~~~C~~CSl~i~~~~~~~~~~   65 (456)
                      |+.|+++|+|+||+++++++.|+|+|||||.|.|++++|++|+.+++|++|||+|+|.|...+..
T Consensus         8 m~~~~dev~LeDm~~de~~~~y~y~CrCGd~F~it~edL~~ge~iv~C~sCSL~I~V~~~~~~~~   72 (83)
T 1wge_A            8 MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIKVIYDKDQFM   72 (83)
T ss_dssp             CCCCSCEEEGGGSCCBTTTTEEEECCSSSSCEEEEHHHHHTTCCEEECTTTCCEEEEECCHHHHH
T ss_pred             cceeeEEEEHHHceEccCCCEEEEeCCCCCEEEECHHHHhCCCEEEECCCCceEEEEEecccccc
Confidence            67899999999999999999999999999999999999999999999999999999999776654

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=99.84  E-value=7e-22  Score=156.54  Aligned_cols=65  Identities=46%  Similarity=0.903  Sum_probs=60.9

Q ss_pred             CceeeeEEeCCCccccCCCceEEEecCCCCcEEeehhhhhcCCcEEeCCCCcceEEEeeeehhhhh
Q psy12281          1 MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLM   66 (456)
Q Consensus         1 ~~~~~~~~~l~d~~~~~~~~~~~~~CrCg~~f~i~~~~l~~~~~~~~C~~CSl~i~~~~~~~~~~~   66 (456)
                      |+ ||++|+|+||+++++++.|+|+|||||.|.|++++|++|+.+++|+||||+|+|.|...+..-
T Consensus         2 ~~-~~dev~leDm~~de~~~~y~ypCrCGd~F~it~edL~~ge~iv~C~sCSL~I~V~~~~~d~~~   66 (83)
T 1yop_A            2 VS-TYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVFDKEDLAE   66 (83)
T ss_dssp             CS-CSBCCBGGGSEEETTTTEEEEEETTTEEEEEEHHHHHTTCCEEECSSSCCEEECBCCSSHHHH
T ss_pred             cc-eeeEEEHHHcEEcCCCCEEEEeCCCCCeEEECHHHHhCCCEEEECCCCccEEEEEEccccccc
Confidence            44 899999999999999999999999999999999999999999999999999999998877654

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=99.80  E-value=5.6e-20  Score=190.78  Aligned_cols=204  Identities=14%  Similarity=0.098  Sum_probs=111.6

Q ss_pred             CCCCHHHHHHhhcCCCCcEEEecCCCc-cccccccccCCCCChhHHHHHhCCceEEEEecCcccccCCceEE-eeHHHH-
Q psy12281         93 PSHIYPYCFNNFLSKNKPFILKSCVNE-WNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTN-MTLKEY-  169 (456)
Q Consensus        93 ~~ls~~~F~~~y~~~~~PvVi~g~~~~-Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~~~y~~~~~~~-m~l~ef-  169 (456)
                      ..+|.++|+++|+ .++|++|++...+ |++++.+-     ++++|.+..+...+...+-+...|.++.... ++-+.+ 
T Consensus        24 ~~is~e~F~~~yw-~kkPllIr~~~~~~~~~f~~l~-----s~~~L~~La~~~~v~~~~v~~~r~~~g~~~~~~~~g~~~   97 (442)
T 2xdv_A           24 SPIKTETFFKEFW-EQKPLLIQRDDPALATYYGSLF-----KLTDLKSLCSRGMYYGRDVNVCRCVNGKKKVLNKDGKAH   97 (442)
T ss_dssp             TTSCHHHHHHHTT-TTSCEEECCCCHHHHHHHHHHC-----CHHHHSSCC------------------------------
T ss_pred             cCCCHHHHHHHhh-hhCcEEeecCCcchhhhhcCcC-----CHHHHHHHHccCcccccccceeeecCCcceeecCCCccC
Confidence            4799999999999 5799999988754 99886442     4788887665433321110000011110000 000000 


Q ss_pred             -HHHHHhcccCCCCCCCCeeeeeccccccCCCCCcccccCcccCcchhhHhhhhhccCCCccceeeeCCCCCcc-ccccc
Q psy12281        170 -TIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWT-PLHAD  247 (456)
Q Consensus       170 -l~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l~~y~~P~~f~~D~ln~~~~~~~~~~~~~~~l~iG~~gs~T-~lH~D  247 (456)
                       -+.++...+     ....+-+.  ...+..|.+.      .+ .+.+..+.   +  .....++|+|++|+.+ ++|+|
T Consensus        98 ~~~l~~~~~~-----~g~tL~l~--~~~~~~p~L~------~l-~~~l~~~~---g--~~~~~n~y~~~~g~~g~~~H~D  158 (442)
T 2xdv_A           98 FLQLRKDFDQ-----KRATIQFH--QPQRFKDELW------RI-QEKLECYF---G--SLVGSNVYITPAGSQGLPPHYD  158 (442)
T ss_dssp             -----CCEEE-----ETTEEEEE--CGGGTCHHHH------HH-HHHHHHHH---T--SCCEEEEEEECTTCBCSCSEEC
T ss_pred             HHHHHHHhcc-----CCcEEEeC--chhhhhhHHH------HH-HHHHHHHh---C--CCcccceEECCCCCCCccceEC
Confidence             000000000     00011111  0111111110      00 11122221   2  4556789999999876 89999


Q ss_pred             ccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEEEeCCC--
Q psy12281        248 VFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEH--  325 (456)
Q Consensus       248 ~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~--  325 (456)
                      .++++  .+|+.|+|+|+|+||.+.  +..   ...+|  .++  ++ ..+.++++|+|||+||||+||||+|.+++.  
T Consensus       159 ~~dvf--~~Qv~G~Krw~l~~p~~p--l~~---~~s~d--~~~--~~-~~~~~~~~L~pGD~LYiP~g~~H~~~s~~~~~  226 (442)
T 2xdv_A          159 DVEVF--ILQLEGEKHWRLYHPTVP--LAR---EYSVE--AEE--RI-GRPVHEFMLKPGDLLYFPRGTIHQADTPAGLA  226 (442)
T ss_dssp             SSEEE--EEEEESCEEEEEECCSST--TCS---SCEEC--CTT--TS-CSCSEEEEECTTCEEEECTTCEEEEECCSSSC
T ss_pred             CcceE--EEEEEeEEEEEEccCCCC--ccc---cCCCC--chh--hc-CCcceEEEECCCcEEEECCCceEEEEecCCCc
Confidence            99998  999999999999999862  111   11122  111  12 256799999999999999999999999863  


Q ss_pred             -cEEEEeec
Q psy12281        326 -TISINHNW  333 (456)
Q Consensus       326 -sIsvn~~~  333 (456)
                       |+.++..-
T Consensus       227 ~SlhlT~~~  235 (442)
T 2xdv_A          227 HSTHVTIST  235 (442)
T ss_dssp             CEEEEEEEE
T ss_pred             ceeeccccc
Confidence             56666554

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=99.76  E-value=3.1e-17  Score=170.08  Aligned_cols=102  Identities=19%  Similarity=0.303  Sum_probs=78.7

Q ss_pred             CCccceeeeCCCCCc-ccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEc
Q psy12281        227 KDDYRFVYMGPKETW-TPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQE  305 (456)
Q Consensus       227 ~~~~~~l~iG~~gs~-T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~  305 (456)
                      .....++|++++|+. .++|+|.++++  .+||.|+|+|+|++|.....+++....  .++..++    ...+.++++|+
T Consensus       162 ~~v~~N~Y~tp~Gs~g~~pH~D~~DvF--llQv~G~KrWrL~~P~~~~~~lp~~~~--~~~~~~~----~~~p~~e~~L~  233 (489)
T 4diq_A          162 SMAGSNVYLTPPNSQGFAPHYDDIEAF--VLQLEGRKLWRVYRPRAPTEELALTSS--PNFSQDD----LGEPVLQTVLE  233 (489)
T ss_dssp             SCEEEEEEEECSSBCCSCCBCCSSEEE--EEEEEECEEEEEECCSSGGGTTCSSCC--CCCCGGG----CCCCSEEEEEC
T ss_pred             CcccceEEecCCCcccccCccCCcceE--EEEEeeEEEEEEeCCCCccccCCCccc--ccCCccc----ccCcceEEEEC
Confidence            345567999999985 48999999998  999999999999999887654432110  1111111    12678999999


Q ss_pred             CCCEEEeCCCCeEEEEeCCC--cEEEEeecCCC
Q psy12281        306 AGDSIFVPSGWHHQVTNLEH--TISINHNWING  336 (456)
Q Consensus       306 pGD~LfIPsgW~H~V~nl~~--sIsvn~~~~~~  336 (456)
                      |||+||||+||||+|.++++  |+++++.....
T Consensus       234 pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~~  266 (489)
T 4diq_A          234 PGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQR  266 (489)
T ss_dssp             TTCEEEECTTCEEEEEBCSSCCEEEEEEEECTT
T ss_pred             CCCEEEECCCCceEEEecCCCceEEEeecccCc
Confidence            99999999999999999975  78888777643

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.72  E-value=3.1e-18  Score=170.69  Aligned_cols=240  Identities=18%  Similarity=0.219  Sum_probs=148.4

Q ss_pred             HHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCcccccCCceEEeeHHHHHHHHHhc
Q psy12281         97 YPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNK  176 (456)
Q Consensus        97 ~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~~~y~~~~~~~m~l~efl~~~~~~  176 (456)
                      ...| ++++.+++||||+|....... ..|+      +++|.+.||+..+.+.+|..     .....+++++|++-+...
T Consensus        24 ~~~F-q~hW~~GePViVs~V~~~~~~-~~W~------Pe~~~~~~gd~~~~lidC~~-----~~~~~i~v~~Ff~Gf~~~   90 (392)
T 2ypd_A           24 WKLF-KECWKQGQPAVVSGVHKKMNI-SLWK------AESISLDFGDHQADLLNCKD-----SIISNANVKEFWDGFEEV   90 (392)
T ss_dssp             HHHH-HHHHTTTCCEEECCHHHHSCG-GGGS------HHHHHHHHTTSCCCCEETTT-----CCBCSCCHHHHHHTSSBG
T ss_pred             HHHH-HHHHhCCCcEEEechhhhCcC-CccC------HHHHHHHhcCceeeeeeCCC-----CccccCcHHHHhhhcccc
Confidence            4567 566779999999987654332 4685      79999999999988888852     345678999999976543


Q ss_pred             ccCC--CCCCCCeeeeeccccccC----CCC----C-cccccCcccCcc-hhhHhhhhhcc--CCC-ccceeee--CC--
Q psy12281        177 IDGK--LSETEPLYYLKDWHFTRD----FKT----E-DIYRVPNVFSSD-WLNEYYSEHLE--HKD-DYRFVYM--GP--  237 (456)
Q Consensus       177 ~~~~--~~~~~~~~Yl~d~~~~~~----~p~----l-~~y~~P~~f~~D-~ln~~~~~~~~--~~~-~~~~l~i--G~--  237 (456)
                      ....  .......+.||||+-...    +|.    + ....+|.|...+ .|| +....+.  ..+ --.-+|+  |.  
T Consensus        91 ~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~G~LN-LAs~LP~~~~kPDLGPK~YiAYG~~~  169 (392)
T 2ypd_A           91 SKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPEGKFN-LASHLPGFFVRPDLGPRLCSAYGVVA  169 (392)
T ss_dssp             GGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTTCTTC-CTTTSCGGGCC---CCEEEEECCSTT
T ss_pred             ccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCCccch-HHHhCCCCCCCCCCCcchhhhcCcch
Confidence            2110  012345688999985543    332    1 112222222222 122 0000000  011 1123444  21  


Q ss_pred             ----CCCcccccccccCccceeEEEE------------------------------------eEEEEEEeCCCCCccccc
Q psy12281        238 ----KETWTPLHADVFHSYSWSVNIC------------------------------------GRKQWLLLAPGNEKYFKD  277 (456)
Q Consensus       238 ----~gs~T~lH~D~~~~~sW~~~i~------------------------------------G~Krw~L~pP~~~~~Ly~  277 (456)
                          ..+.|.||.|+.+..+-.+-+.                                    |--.|-+|.+.+.+.|+.
T Consensus       170 ~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~r~~~~~~~~GAlW~Ifr~~D~~klr~  249 (392)
T 2ypd_A          170 AKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGILSKAGILKKFEEEDLDDILRKRLKDSSEIPGALWHIYAGKDVDKIRE  249 (392)
T ss_dssp             TTCTTCCSEEEEECSSEEEEEEEEEECCBCTTCCCHHHHHHHHHTSCCCHHHHHHHTCTTCCEEEEEEEECGGGHHHHHH
T ss_pred             hcccCCCcceeeeehhhhhhhhheecccCccccchhhhhhhhhhhccccHHHhhhccCCCCCCCceeeeeCHhhHHHHHH
Confidence                2346999999999873333322                                    235788888888776654


Q ss_pred             CC-------CCccc-cCCCcccC-C-C----------C--CCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCC
Q psy12281        278 SM-------GNLIS-DMRSVDWS-T-L----------P--RDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWIN  335 (456)
Q Consensus       278 ~~-------g~~p~-d~~~pd~~-~-f----------p--~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~  335 (456)
                      ..       |. +. ....|--+ . |          .  ..++++++|.+||+||||+||+|||.|+.+||+|+.+|++
T Consensus       250 ~L~~~~~e~~~-~~~~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~s  328 (392)
T 2ypd_A          250 FLQKISKEQGL-EVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVS  328 (392)
T ss_dssp             HHHHHHHHHC-------CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECC
T ss_pred             HHHHHHHhhCC-CccCCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcC
Confidence            31       10 10 01111111 1 1          1  2799999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy12281        336 GTNIDHVYHEMVSHLE  351 (456)
Q Consensus       336 ~~nl~~~~~~l~~~~~  351 (456)
                      +.|+..+++.....+.
T Consensus       329 pe~~~~c~~lt~E~R~  344 (392)
T 2ypd_A          329 PEHLVESFHLTQELRL  344 (392)
T ss_dssp             GGGHHHHHHHHHHC--
T ss_pred             hhhHHHHHHHHHHHhh
Confidence            9999999987664443

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.30  E-value=2e-12  Score=115.79  Aligned_cols=57  Identities=26%  Similarity=0.713  Sum_probs=53.0

Q ss_pred             eeeeEEeCCCccccCCCceEEEecCCCCcEEeehhhhhcCCcEEeCCCCcceEEEeee
Q psy12281          3 VYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVI   60 (456)
Q Consensus         3 ~~~~~~~l~d~~~~~~~~~~~~~CrCg~~f~i~~~~l~~~~~~~~C~~CSl~i~~~~~   60 (456)
                      .+..++.+++|+++++.++|+|+||||+.|.+++++|++| .+|+|++|||+|+|.|.
T Consensus        92 ~~~~~~~~~~m~~~e~~~~f~~~CrCG~~f~i~~~~l~~~-~~v~C~sCSl~~~v~~~  148 (155)
T 2l6l_A           92 PVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEEV-SLISCDTCSLIIELLHY  148 (155)
T ss_dssp             SSSEEEETTTSEEETTTTEEEEECSSSCEEEEETTHHHHC-CEEECSSSSCEEEEECC
T ss_pred             cccceeeHHHhccccCCcEEEEcCCCCCeEEecHHHhCCC-CEEECCCCceEEEEEEc
Confidence            4567899999999999999999999999999999999987 79999999999999984

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}

Probab=99.07  E-value=9.2e-10  Score=108.94  Aligned_cols=233  Identities=16%  Similarity=0.205  Sum_probs=138.9

Q ss_pred             CCCHHHHHHhhcCCCCc-EEEecCCC--ccccccccccCCCCChhHHHHHhCCceEEEEecCc----cccc---------
Q psy12281         94 SHIYPYCFNNFLSKNKP-FILKSCVN--EWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNS----YYFN---------  157 (456)
Q Consensus        94 ~ls~~~F~~~y~~~~~P-vVi~g~~~--~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~----~~y~---------  157 (456)
                      ..|+. +.+-+..++.| +||||+..  .+.. ..+      +.+.|.+..|+..|.|..+..    ..++         
T Consensus        23 a~s~~-l~~~~~~~~~pi~vIrgl~~~l~ld~-~lF------s~~~L~~~~~~~~i~vr~Q~~q~~~~N~~~~~~~~~W~   94 (332)
T 2xxz_A           23 AFSPV-LLQFCTDPRNPITVIRGLAGSLRLNL-GLF------STKTLVEASGEHTVEVRTQVQQPSDENWDLTGTRQIWP   94 (332)
T ss_dssp             TSSHH-HHHHHHCTTCSEEEEESHHHHHTCCG-GGG------SHHHHHHHHTTCEEEEEEEECCCTTCCBCTTSSSBCSB
T ss_pred             hcCHH-HHHHhcCCCCCeEEEcchhhhhCcCh-hhC------CHHHHHHhCCCCeeeeeecCCCCCcccccCCCCccccc
Confidence            34443 33334456889 89998763  2322 234      468999999999998864321    1111         


Q ss_pred             -CCceEEeeHHHHHHHHHhcccCCCCCCCC---------------------------ee-eeecccccc--CCC-CC-cc
Q psy12281        158 -AHEKTNMTLKEYTIYWQNKIDGKLSETEP---------------------------LY-YLKDWHFTR--DFK-TE-DI  204 (456)
Q Consensus       158 -~~~~~~m~l~efl~~~~~~~~~~~~~~~~---------------------------~~-Yl~d~~~~~--~~p-~l-~~  204 (456)
                       ...+..+|+++|.+|..+.-+........                           .+ |-...++..  .+. .+ ..
T Consensus        95 ~~~~~~~~ti~kya~yq~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~fgtNiDL~~~~~w~~q~~el  174 (332)
T 2xxz_A           95 CESSRSHTTIAKYAQYQASSFQESLQEEKESEDEESEEPDSTTGTPPSSAPDPKNHHIIKFGTNIDLSDAKRWKPQLQEL  174 (332)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHTTCSCC---------------------------CCEEEEEEEEECCCHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHhhhhhhccchhcccccccccccccccccccceeeeeecccCCchhhhHHHHHHH
Confidence             11267899999999876332110000000                           00 000000000  000 00 01


Q ss_pred             cccCcccC----cchhhHhhhhhccCCCccceeeeCCCCCcccccccccCccceeEEEE-eEEEEEEeCCCCCcccccC-
Q psy12281        205 YRVPNVFS----SDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNIC-GRKQWLLLAPGNEKYFKDS-  278 (456)
Q Consensus       205 y~~P~~f~----~D~ln~~~~~~~~~~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~-G~Krw~L~pP~~~~~Ly~~-  278 (456)
                      -.+|.++.    .+.|+ +.+. ....-...++|||..||+|++|.+....+|-+.++. |.|.|+-+|++....+... 
T Consensus       175 ~kLP~~lr~~~~gslL~-~~~~-~I~Gvn~pqLYig~~gS~t~~H~Ed~~l~SiNynhgp~~~~Wy~VP~e~~~~~e~l~  252 (332)
T 2xxz_A          175 LKLPAFMRVTSTGNMLS-HVGH-TILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAFC  252 (332)
T ss_dssp             TTSCGGGCTTTTCCCSE-ETTE-ECCCTTSEEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHH
T ss_pred             hhCcHhhcccCccchhh-hcCC-cCCCcChhheEeecCcccccceecCCcceeEEeecCCCceEEEEECHHHHHHHHHHH
Confidence            13444433    22222 1110 012446689999999999999999999887787777 6799999999876544321 


Q ss_pred             --CCCccccCCCccc----CCC--CCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCH
Q psy12281        279 --MGNLISDMRSVDW----STL--PRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNI  339 (456)
Q Consensus       279 --~g~~p~d~~~pd~----~~f--p~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl  339 (456)
                        .|   .|.....+    +..  +..+.+.++|+|||.|++++|-+|+|.|.+-|++++.|+.....+
T Consensus       253 ~k~~---~d~~~~~~~~~p~~L~~~gIPvyr~~QkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~  318 (332)
T 2xxz_A          253 DRHG---VDYLTGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAY  318 (332)
T ss_dssp             HHTT---CCTTTSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEESCTTG
T ss_pred             HhcC---CchhhceecCCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecceeeEEEEEeCCCcHH
Confidence              11   11111110    011  237899999999999999999999999999999999999887654

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*

Probab=99.02  E-value=2.2e-08  Score=104.83  Aligned_cols=229  Identities=15%  Similarity=0.165  Sum_probs=138.0

Q ss_pred             HHhhcCCCCc-EEEecCCC--ccccccccccCCCCChhHHHHHhCCceEEEEecC----cccccC----------CceEE
Q psy12281        101 FNNFLSKNKP-FILKSCVN--EWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCN----SYYFNA----------HEKTN  163 (456)
Q Consensus       101 ~~~y~~~~~P-vVi~g~~~--~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~----~~~y~~----------~~~~~  163 (456)
                      .+.+..++.| +||||+..  .|.. ..+      +.+.|.+..|+..|.|....    ...++.          ..+..
T Consensus        87 ~~~c~~~~~pi~vIrgl~~~l~ld~-~lF------s~~~L~~~~~~~~i~vr~Q~~q~~~~N~~~~~~~~~W~~~s~~~~  159 (531)
T 3avr_A           87 HQFCTNPNNPVTVIRGLAGALKLDL-GLF------STKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWHCESNRSH  159 (531)
T ss_dssp             HHHHHCTTCSEEEEETHHHHHTCCG-GGG------SHHHHHHHCTTCEEEEEEEECCCTTCCBCTTSSSBCSBCCEEEEE
T ss_pred             HHHhcCCCCCeEEEccchhccCcCc-ccC------CHHHHHHhCCCCeeeeeecCCCCCCcCccccCCceeeeeccccCc
Confidence            3333456789 88998763  3322 234      36899999999999886421    111111          12567


Q ss_pred             eeHHHHHHHHHhccc-CCCCCCCCee----------------------------eeecccccc--CCC-CC-cccccCcc
Q psy12281        164 MTLKEYTIYWQNKID-GKLSETEPLY----------------------------YLKDWHFTR--DFK-TE-DIYRVPNV  210 (456)
Q Consensus       164 m~l~efl~~~~~~~~-~~~~~~~~~~----------------------------Yl~d~~~~~--~~p-~l-~~y~~P~~  210 (456)
                      +|+++|.+|....-+ .-........                            |-.+.++..  .+. .+ ..-.+|.+
T Consensus       160 ~ti~kya~yq~~s~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~fgtNiDL~~~~~w~~ql~el~kLP~~  239 (531)
T 3avr_A          160 TTIAKYAQYQASSFQESLREENEKRSHHKDHSDSESTSSDNSGRRRKGPFKTIKFGTNIDLSDDKKWKLQLHELTKLPAF  239 (531)
T ss_dssp             EEHHHHHHHHHHHHHHTC------------------------------CCCEEEEEEEEECCCTTTTHHHHHHGGGSCGG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccccccchhccccCCCcccccccccCCCchhhhHHHHHHHHhCCHH
Confidence            999999998553110 0000000000                            111111100  000 00 01235665


Q ss_pred             cCc----chhhHhhhhhccCCCccceeeeCCCCCcccccccccCccceeEEEEe-EEEEEEeCCCCCcccccC---CCCc
Q psy12281        211 FSS----DWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICG-RKQWLLLAPGNEKYFKDS---MGNL  282 (456)
Q Consensus       211 f~~----D~ln~~~~~~~~~~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G-~Krw~L~pP~~~~~Ly~~---~g~~  282 (456)
                      +..    +.|+......  ..-...++|||..||+|++|.+.....|-+.++.| .|.|+.+|++....+...   .|. 
T Consensus       240 lr~~~~gslL~~~~~~I--~Gvn~pqLYig~~gS~t~~H~E~~~l~SiNynhggg~~~Wy~VP~e~~~k~e~l~~k~~~-  316 (531)
T 3avr_A          240 VRVVSAGNLLSHVGHTI--LGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVLNDFCEKNNL-  316 (531)
T ss_dssp             GCSSCTTCGGGGSCSCC--BTTSSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHTTC-
T ss_pred             HcccCccchhhhcCCCC--CCcChhheEeecCcccccceecCCcceeeEeecCCCCeEEEEeCHHHHHHHHHHHHHcCC-
Confidence            542    3333211111  24567899999999999999999998888888875 799999999886554321   121 


Q ss_pred             cccCCCcc----cCCC--CCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCHHH
Q psy12281        283 ISDMRSVD----WSTL--PRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDH  341 (456)
Q Consensus       283 p~d~~~pd----~~~f--p~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~~  341 (456)
                        |.....    .+..  ...+.+.++|+|||.|++++|-+|+|.|.+-|++++.|+.....+..
T Consensus       317 --~~~~~~~~~~p~~L~~~gIPvyr~vQkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~q~  379 (531)
T 3avr_A          317 --NFLMGSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQY  379 (531)
T ss_dssp             --CTTTSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCSSHHHH
T ss_pred             --ChhhceeecCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecceeeeeEEEeccCchHHH
Confidence              111110    0011  13788999999999999999999999999999999999998876553

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*

Probab=98.62  E-value=3.6e-07  Score=94.28  Aligned_cols=109  Identities=21%  Similarity=0.184  Sum_probs=83.1

Q ss_pred             CCccceeeeCCCCCcccccccccCccceeEEEEe-EEEEEEeCCCCCcccccC---CCCccccCCCccc----CCC--CC
Q psy12281        227 KDDYRFVYMGPKETWTPLHADVFHSYSWSVNICG-RKQWLLLAPGNEKYFKDS---MGNLISDMRSVDW----STL--PR  296 (456)
Q Consensus       227 ~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G-~Krw~L~pP~~~~~Ly~~---~g~~p~d~~~pd~----~~f--p~  296 (456)
                      .-...++|||..||+|++|.+....+|-+.++.| .|.|+.+|+.....+...   .|.   |+....+    +..  +.
T Consensus       233 GVNtpqLYigm~gS~t~wH~Ed~~l~SINynhggg~c~WY~VP~e~~~k~e~l~~k~~~---d~l~~~~~pspe~L~kag  309 (510)
T 4ask_A          233 GMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHGV---DYLTGSWWPILDDLYASN  309 (510)
T ss_dssp             TTTSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHTTC---CTTTSCBCCCHHHHHHTT
T ss_pred             CcChhheEEccccccccceecCCcceeEEEeecCCceeEEEECHHHHHHHHHHHHHhCc---chhhccccCCHHHHHhCC
Confidence            4566799999999999999999988877888855 799999999876543321   111   1111100    001  23


Q ss_pred             CceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCC
Q psy12281        297 DTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTN  338 (456)
Q Consensus       297 ~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~n  338 (456)
                      .+.+.++|+|||.|++++|-+|+|.|.+-+++++.|+.....
T Consensus       310 IPvyr~iQkPGdfVit~PgtyH~Vqs~Gf~~niaWNvap~t~  351 (510)
T 4ask_A          310 IPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTA  351 (510)
T ss_dssp             CCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECBSSH
T ss_pred             CCeEEEEECCCCEEEECCCceEEEEecCeeeeeEEEecCCCH
Confidence            789999999999999999999999999998888888887654

>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*

Probab=98.23  E-value=5e-07  Score=89.87  Aligned_cols=114  Identities=18%  Similarity=0.153  Sum_probs=87.1

Q ss_pred             CCccceeeeCCCCCcccccccccCccceeEEEEeE-EEEEEeCCCCCcccccCCCCc-ccc-CCCcccCC------C---
Q psy12281        227 KDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGR-KQWLLLAPGNEKYFKDSMGNL-ISD-MRSVDWST------L---  294 (456)
Q Consensus       227 ~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~-Krw~L~pP~~~~~Ly~~~g~~-p~d-~~~pd~~~------f---  294 (456)
                      .-...++|+|..+|.+.+|.+-...+|.+.+..|. |.|..+|+.+...+....... |-. -..+++-.      -   
T Consensus       174 GVntP~LYiGm~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~p~~~~~c~~fL~h~~~lisP~~  253 (354)
T 3dxt_A          174 GVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTV  253 (354)
T ss_dssp             CCCCCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSHHHHHHCTTGGGGCCEEECHHH
T ss_pred             CccceeeeeccccCCCcceecCCcceEEEEEecCCceEEEEeCHHHHHHHHHHHHHhCchhhhhcHHHHhcCcccCCHHH
Confidence            44567999999999999999999999999999998 999999999876443210000 000 00111111      0   


Q ss_pred             ---CCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCHH
Q psy12281        295 ---PRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNID  340 (456)
Q Consensus       295 ---p~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~  340 (456)
                         ...+.+.++|+|||.|++-+|.||.+.|.+-+++.+.||....-++
T Consensus       254 L~~~GIpv~~~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~  302 (354)
T 3dxt_A          254 LKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWID  302 (354)
T ss_dssp             HHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCGGGHH
T ss_pred             HHHCCCceEEEEeCCCcEEEECCCceEEEeeccccHhHhhccCcHHHHH
Confidence               1378999999999999999999999999999999999999876544

>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*

Probab=97.77  E-value=1.4e-05  Score=80.05  Aligned_cols=116  Identities=13%  Similarity=0.078  Sum_probs=82.0

Q ss_pred             CCccceeeeCCCCCcccccccccCccceeEEEEeE-EEEEEeCCCCCcccccCCC-CccccC-CCcccCC------C---
Q psy12281        227 KDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGR-KQWLLLAPGNEKYFKDSMG-NLISDM-RSVDWST------L---  294 (456)
Q Consensus       227 ~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~-Krw~L~pP~~~~~Ly~~~g-~~p~d~-~~pd~~~------f---  294 (456)
                      .-...++|+|..+|.+++|.+-...+|-+.+..|. |.|..+|+.+...+..... .+|-.. ..+++-.      -   
T Consensus       217 GVntP~LYvGm~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~p~~~~~c~~fL~h~~~lisP~~  296 (373)
T 3opt_A          217 GVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFKFYKFMQEQFPEEAKNCPEFLRHKMFLASPKL  296 (373)
T ss_dssp             ---CCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEECCGGGHHHHHHHHHHSSHHHHSSCSSCTTTSCEEECHHH
T ss_pred             CcchhheeeccccCCcceeecCCcceeEEEeecCCCeEEEEeCHHHHHHHHHHHHHhChhhhhhCHHHhhCCcccCCHHH
Confidence            34567899999999999999998888778887776 9999999998664432100 011000 0111111      0   


Q ss_pred             ---CCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCHHHH
Q psy12281        295 ---PRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHV  342 (456)
Q Consensus       295 ---p~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~~~  342 (456)
                         ...+.+.++|+|||.|++=+|=||.+.|.+-+++.+.||....-+..-
T Consensus       297 L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g  347 (373)
T 3opt_A          297 LQENGIRCNEIVHHEGEFMITYPYGYHAGFNYGYNLAESVNFALEEWLPIG  347 (373)
T ss_dssp             HHTTTCCCEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEECCC------
T ss_pred             HHhcCCceEEEEECCCCEEEECCCceEEEEecCccHHHHHccCcHHHHHhh
Confidence               137899999999999999999999999999999999999988765543

>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*

Probab=97.68  E-value=3.6e-05  Score=77.51  Aligned_cols=114  Identities=18%  Similarity=0.150  Sum_probs=84.7

Q ss_pred             CCccceeeeCCCCCcccccccccCccceeEEEEe-EEEEEEeCCCCCcccccCCCC-ccccC-CCcccCC---C------
Q psy12281        227 KDDYRFVYMGPKETWTPLHADVFHSYSWSVNICG-RKQWLLLAPGNEKYFKDSMGN-LISDM-RSVDWST---L------  294 (456)
Q Consensus       227 ~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G-~Krw~L~pP~~~~~Ly~~~g~-~p~d~-~~pd~~~---f------  294 (456)
                      .-...++|+|..+|.+.+|.+-...+|-+.+-.| .|.|+.+|+.+...+...... +|-.. ..+++-.   +      
T Consensus       192 GVn~P~LYiGm~~S~f~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~P~~~~~~~~~L~h~~~~isP~~  271 (381)
T 2ox0_A          192 GVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLM  271 (381)
T ss_dssp             TTTSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSHHHHHHCTTGGGGSCEEECHHH
T ss_pred             CcccceEEeeccccCcCceecCCcceeeEEeecCCceEEEecCHHHHHHHHHHHHHhChhhhhcchHHhhccccccCHHH
Confidence            3456789999999999999999988877777667 699999999987654321000 01000 0111111   0      


Q ss_pred             ---CCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEeecCCCCCHH
Q psy12281        295 ---PRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNID  340 (456)
Q Consensus       295 ---p~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~~~~~~nl~  340 (456)
                         ...+.+.++|+|||.|++=+|-||.+.|.+-+++.+.||....-+.
T Consensus       272 L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~Wl~  320 (381)
T 2ox0_A          272 LKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIE  320 (381)
T ss_dssp             HHHTTCCCEEEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTTHHH
T ss_pred             HHHCCCceEEEEecCCCEEEECCCcEEEeecCcccHHHHhccCcHHHHH
Confidence               1378999999999999999999999999999999999998876544

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=95.94  E-value=0.027  Score=50.54  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=51.9

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|..|+.| |...+..+..++.|+=+-+.|.+.... +                     ...-+.++.|||+.+.|++.
T Consensus        77 ~PGq~S~iH-dH~~s~~~~~VL~G~l~e~~y~~~~~~-~---------------------~~~~~~~l~~G~~~~~~~~~  133 (171)
T 3eqe_A           77 PPNKETTVH-DHGQSIGCAMVLEGKLLNSIYRSTGEH-A---------------------ELSNSYFVHEGECLISTKGL  133 (171)
T ss_dssp             CTTCBCCEE-CCTTCEEEEEEEESEEEEEEEEECSSS-E---------------------EEEEEEEEETTCEEEECTTC
T ss_pred             CCCCCcccc-cCCCceEEEEEEeeeEEEEEeecCCCc-e---------------------eecceEEeCCCcEEEeCCCC
Confidence            446679998 555566668899999887776532110 0                     12346789999999999999


Q ss_pred             eEEEEeCCC--cEEEEe
Q psy12281        317 HHQVTNLEH--TISINH  331 (456)
Q Consensus       317 ~H~V~nl~~--sIsvn~  331 (456)
                      .|+|.|.++  +|||..
T Consensus       134 iH~V~N~~~~~aVSlHv  150 (171)
T 3eqe_A          134 IHKMSNPTSERMVSLHV  150 (171)
T ss_dssp             EEEEECCSSSCEEEEEE
T ss_pred             EEEEECCCCCCEEEEEE
Confidence            999999887  566554

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=95.45  E-value=0.019  Score=51.72  Aligned_cols=63  Identities=17%  Similarity=0.190  Sum_probs=47.4

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-+-|.+ ..++| . .+..-|..++.|+=+..+..|+.                           ..+..+++||+++|
T Consensus        46 ~~l~pg~-~~~pH-h-~~a~E~~yVl~G~~~v~v~~~~~---------------------------~~~~~l~~GDv~~~   95 (178)
T 1dgw_A           46 YCSKPNT-LLLPH-H-SDSDLLVLVLEGQAILVLVNPDG---------------------------RDTYKLDQGDAIKI   95 (178)
T ss_dssp             EEECTTE-EEEEE-E-ESSEEEEEEEESEEEEEEEETTE---------------------------EEEEEEETTEEEEE
T ss_pred             EEecCCc-EecCc-C-CCCCEEEEEEeEEEEEEEEeCCC---------------------------cEEEEECCCCEEEE
Confidence            4555544 46777 2 23345689999999998876542                           12568999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |+|..|...|.++
T Consensus        96 P~g~~H~~~N~g~  108 (178)
T 1dgw_A           96 QAGTPFYLINPDN  108 (178)
T ss_dssp             CTTCCEEEEECCS
T ss_pred             CCCCeEEEEeCCC
Confidence            9999999999875

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=95.20  E-value=0.059  Score=55.79  Aligned_cols=78  Identities=12%  Similarity=0.001  Sum_probs=57.6

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-+.+ |+..++|+.+.. ..|..++.|+=+..++.+..                         .+.+..++++||+++
T Consensus       326 ~v~l~p-G~~~~pH~Hp~A-~Ei~yV~~G~~~v~vv~~~g-------------------------~~~~~~~l~~GDv~v  378 (459)
T 2e9q_A          326 RGVLYS-NAMVAPHYTVNS-HSVMYATRGNARVQVVDNFG-------------------------QSVFDGEVREGQVLM  378 (459)
T ss_dssp             EEEECT-TCEEEEEEESSC-CEEEEEEEEEEEEEEECTTS-------------------------CEEEEEEEETTCEEE
T ss_pred             EEEeeC-CcCccceECCCC-CEEEEEEeeEEEEEEEeCCC-------------------------CEEEeeEEeCCcEEE
Confidence            355555 556999998865 47899999999999987653                         134567899999999


Q ss_pred             eCCCCeEEEEeCCCcEEEEeecCCC
Q psy12281        312 VPSGWHHQVTNLEHTISINHNWING  336 (456)
Q Consensus       312 IPsgW~H~V~nl~~sIsvn~~~~~~  336 (456)
                      ||.|+.|...|.++.+.+-.-+.+.
T Consensus       379 ~P~G~~H~~~ng~~~~~~l~~~~s~  403 (459)
T 2e9q_A          379 IPQNFVVIKRASDRGFEWIAFKTND  403 (459)
T ss_dssp             ECTTCEEEEEEEEEEEEEEEEESSS
T ss_pred             ECCCCEEEEEeCCCCeEEEEEecCC
Confidence            9999999999954444443333333

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=95.07  E-value=0.08  Score=55.44  Aligned_cols=78  Identities=12%  Similarity=0.074  Sum_probs=56.4

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-+.+ |+..++|+.+.. .-|..++.|+=++.+..+.-                         .+.+..+++|||+++
T Consensus       376 ~v~L~P-G~~~~pH~Hp~a-~Ei~yVl~G~~~v~vv~~~G-------------------------~~~~~~~l~~GDv~v  428 (510)
T 3c3v_A          376 YGNLYR-NALFVPHYNTNA-HSIIYALRGRAHVQVVDSNG-------------------------NRVYDEELQEGHVLV  428 (510)
T ss_dssp             EEEEET-TCEEEEEEESSC-CEEEEEEESEEEEEEECTTS-------------------------CEEEEEEEETTCEEE
T ss_pred             EEEecC-CceecceECCCC-CEEEEEEeCEEEEEEEeCCC-------------------------CEEEeEEEcCCcEEE
Confidence            345555 456999998854 35689999999998876531                         134567899999999


Q ss_pred             eCCCCeEEEEeCCCcEEEEeecCCC
Q psy12281        312 VPSGWHHQVTNLEHTISINHNWING  336 (456)
Q Consensus       312 IPsgW~H~V~nl~~sIsvn~~~~~~  336 (456)
                      ||+|+.|.+.|.++.+.+-.-+.+.
T Consensus       429 iP~G~~H~~~Ng~e~l~~l~f~~s~  453 (510)
T 3c3v_A          429 VPQNFAVAGKSQSDNFEYVAFKTDS  453 (510)
T ss_dssp             ECTTCEEEEEECSSEEEEEEEESSS
T ss_pred             ECCCCeEEEEeCCCCEEEEEEECCC
Confidence            9999999999954555554434343

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=95.06  E-value=0.089  Score=54.89  Aligned_cols=71  Identities=20%  Similarity=0.197  Sum_probs=56.1

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-+.+ |+..++|+.+..+ .|..++.|+=+..++.|.-                         .+.+..++++||+++
T Consensus       362 ~v~L~p-Ggm~~PHwHp~A~-Ei~yVl~G~~rv~~V~~~g-------------------------~~~f~~~l~~GDV~v  414 (496)
T 3ksc_A          362 HGSLHK-NAMFVPHYNLNAN-SIIYALKGRARLQVVNCNG-------------------------NTVFDGELEAGRALT  414 (496)
T ss_dssp             EEEEET-TCEEEEEEESSCC-EEEEEEESEEEEEEECTTS-------------------------CEEEEEEEETTCEEE
T ss_pred             EEEeeC-CeEECCeeCCCCC-EEEEEEeceEEEEEEeCCC-------------------------cEEEEEEecCCeEEE
Confidence            456666 4559999988754 7899999999999998752                         134567899999999


Q ss_pred             eCCCCeEEEEeCCCcEEE
Q psy12281        312 VPSGWHHQVTNLEHTISI  329 (456)
Q Consensus       312 IPsgW~H~V~nl~~sIsv  329 (456)
                      ||.|+.|...|.++.+.+
T Consensus       415 ~P~G~~H~~~a~~e~~~~  432 (496)
T 3ksc_A          415 VPQNYAVAAKSLSDRFSY  432 (496)
T ss_dssp             ECTTCEEEEEECSSEEEE
T ss_pred             ECCCCEEEEEeCCCCEEE
Confidence            999999998888665444

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=95.04  E-value=0.087  Score=54.80  Aligned_cols=79  Identities=14%  Similarity=0.103  Sum_probs=57.1

Q ss_pred             ceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEE
Q psy12281        231 RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSI  310 (456)
Q Consensus       231 ~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~L  310 (456)
                      ..+-+.+ |+..++|+.+.. .-|..++.|+=+..+..+.-                         .+.+..+++|||++
T Consensus       341 ~~v~l~p-Ga~~~pH~Hp~a-~Ei~yVl~G~~~v~v~~~~G-------------------------~~~~~~~l~~GDv~  393 (476)
T 1fxz_A          341 EFGSLRK-NAMFVPHYNLNA-NSIIYALNGRALIQVVNCNG-------------------------ERVFDGELQEGRVL  393 (476)
T ss_dssp             EEEEECT-TCEEEEEEETTC-CEEEEEEESEEEEEEECTTS-------------------------CEEEEEEEETTCEE
T ss_pred             EEEEecC-CceecceECCCC-CEEEEEEeCEEEEEEEecCC-------------------------CEEeeeEEcCCCEE
Confidence            3455665 456999998854 35689999999998875531                         23456789999999


Q ss_pred             EeCCCCeEEEEeCCCcEEEEeecCCC
Q psy12281        311 FVPSGWHHQVTNLEHTISINHNWING  336 (456)
Q Consensus       311 fIPsgW~H~V~nl~~sIsvn~~~~~~  336 (456)
                      +||+|+.|...|.++.+.+-.-+.+.
T Consensus       394 viP~G~~H~~~ng~~~l~~l~f~~s~  419 (476)
T 1fxz_A          394 IVPQNFVVAARSQSDNFEYVSFKTND  419 (476)
T ss_dssp             EECTTCEEEEEECSTTEEEEEEESSS
T ss_pred             EECCCCeEEEEeCCCCEEEEEEECCC
Confidence            99999999999954555554434343

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=94.94  E-value=0.065  Score=56.07  Aligned_cols=72  Identities=14%  Similarity=0.068  Sum_probs=54.7

Q ss_pred             ceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEE
Q psy12281        231 RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSI  310 (456)
Q Consensus       231 ~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~L  310 (456)
                      ..+-+.+.+ ..++|+.+.. .-|..++.|+-+..++.+.-                         .+.++.++++||++
T Consensus       397 a~v~L~pGg-m~~PHwHp~A-~Ei~yVl~G~~rv~~V~~~G-------------------------~~v~~~~L~~GDV~  449 (531)
T 3fz3_A          397 ERGFFYRNG-IYSPHWNVNA-HSVVYVIRGNARVQVVNENG-------------------------DAILDQEVQQGQLF  449 (531)
T ss_dssp             EEEEECTTC-EEEEEEESSC-CEEEEEEEEEEEEEEECTTS-------------------------CEEEEEEEETTCEE
T ss_pred             EEEEeecCc-cccceEcCCC-CEEEEEEeCcEEEEEEeCCC-------------------------cEEEEEEecCCeEE
Confidence            346667655 4789998864 36899999999999987642                         13567899999999


Q ss_pred             EeCCCCeEEEEeCCCcEEE
Q psy12281        311 FVPSGWHHQVTNLEHTISI  329 (456)
Q Consensus       311 fIPsgW~H~V~nl~~sIsv  329 (456)
                      +||.|+.|...+.++.+.+
T Consensus       450 v~P~G~~H~~~ag~e~l~f  468 (531)
T 3fz3_A          450 IVPQNHGVIQQAGNQGFEY  468 (531)
T ss_dssp             EECTTCEEEEEEEEEEEEE
T ss_pred             EECCCCeEEEecCCCCEEE
Confidence            9999999977665444444

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=94.69  E-value=0.11  Score=47.42  Aligned_cols=68  Identities=19%  Similarity=0.227  Sum_probs=49.4

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-+.+. ...++|+.... .-+..++.|+=+..+..+...       |                .+.++.+++|||+++|
T Consensus        77 ~~l~pg-~~~~~H~H~~~-~E~~~Vl~G~~~v~~~~~~~~-------~----------------~~~~~~~l~~GD~~~i  131 (201)
T 1fi2_A           77 VDFAPG-GTNPPHIHPRA-TEIGMVMKGELLVGILGSLDS-------G----------------NKLYSRVVRAGETFVI  131 (201)
T ss_dssp             EEECTT-CEEEEEECTTC-CEEEEEEESEEEEEEECCGGG-------T----------------TCEEEEEEETTCEEEE
T ss_pred             EEECCC-CCCCCeECCCC-CEEEEEEeCEEEEEEEcCCCC-------C----------------CeEEEEEECCCCEEEE
Confidence            445554 45889988742 133889999988887644310       0                2345789999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |+|-+|...|.++
T Consensus       132 P~g~~H~~~N~g~  144 (201)
T 1fi2_A          132 PRGLMHFQFNVGK  144 (201)
T ss_dssp             CTTCCEEEEECSS
T ss_pred             CCCCeEEEEeCCC
Confidence            9999999999876

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=94.60  E-value=0.13  Score=46.70  Aligned_cols=58  Identities=24%  Similarity=0.381  Sum_probs=42.3

Q ss_pred             cccccccc-CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEE
Q psy12281        242 TPLHADVF-HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQV  320 (456)
Q Consensus       242 T~lH~D~~-~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V  320 (456)
                      ++.|+... +..-...++.|+=.+.+-...                          .+.....++|||+++||+|.+|..
T Consensus        86 ~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~--------------------------g~~~~~~l~~GD~v~ip~g~~H~~  139 (190)
T 1x82_A           86 TKGHFHAKLDRAEVYVALKGKGGMLLQTPE--------------------------GDAKWISMEPGTVVYVPPYWAHRT  139 (190)
T ss_dssp             CCCBBCSSTTCCEEEEEEESCEEEEEECTT--------------------------CCEEEEEECTTCEEEECTTCEEEE
T ss_pred             CCCeECCCCCCCEEEEEEcCEEEEEEcCcC--------------------------CcEEEEEECCCcEEEECCCCeEEE
Confidence            67787653 222337788888777663110                          235678999999999999999999


Q ss_pred             EeCCC
Q psy12281        321 TNLEH  325 (456)
Q Consensus       321 ~nl~~  325 (456)
                      .|.++
T Consensus       140 ~N~g~  144 (190)
T 1x82_A          140 VNIGD  144 (190)
T ss_dssp             EECSS
T ss_pred             EECCc
Confidence            99876

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=94.46  E-value=0.19  Score=46.15  Aligned_cols=75  Identities=15%  Similarity=0.076  Sum_probs=53.0

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe-CCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV-PSG  315 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI-Psg  315 (456)
                      ++|..||.| |..++..|..++.|.=+-..|-.....       ..            +-...-+.++.|||+.|+ |.+
T Consensus        78 ~PGq~SpiH-DH~~s~g~i~VL~G~l~e~~y~~~~~~-------~~------------~l~~~~~~~l~~G~v~~~~~~~  137 (200)
T 3eln_A           78 GEGHGSSIH-DHTDSHCFLKLLQGNLKETLFDWPDKK-------SN------------EMIKKSERTLRENQCAYINDSI  137 (200)
T ss_dssp             CTTCBCCEE-CCTTCEEEEEEEESCEEEEEECCCCSS-------CC------------CCCEEEEEEECTTCEEEECTTT
T ss_pred             CCCCcCCCc-cCCCceEEEEEEeeeEEEEEeecCCCC-------cc------------cccccceEEeCCCCEEEecCCC
Confidence            456779999 555567778999999887777432110       00            012345789999999999 777


Q ss_pred             CeEEEEeCC-C--cEEEEe
Q psy12281        316 WHHQVTNLE-H--TISINH  331 (456)
Q Consensus       316 W~H~V~nl~-~--sIsvn~  331 (456)
                      =.|+|.|.+ +  +|||..
T Consensus       138 giH~V~N~s~~~~avSlHv  156 (200)
T 3eln_A          138 GLHRVENVSHTEPAVSLHL  156 (200)
T ss_dssp             CEEEEECCCSSCCEEEEEE
T ss_pred             cEEEEECCCCCCCEEEEEe
Confidence            799999987 3  666664

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=94.31  E-value=0.16  Score=52.49  Aligned_cols=68  Identities=9%  Similarity=0.022  Sum_probs=52.9

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-+.+ |+..++|+.+..+ .|..++.|+=+..++.|.-                         .+.+..++++||+++
T Consensus       327 ~v~L~p-Ggm~~PHwHp~A~-Ei~yVl~G~~rv~~V~~~g-------------------------~~~f~~~l~~GDV~v  379 (466)
T 3kgl_A          327 RGSIRQ-NAMVLPQWNANAN-AVLYVTDGEAHVQVVNDNG-------------------------DRVFDGQVSQGQLLS  379 (466)
T ss_dssp             EEEEET-TEEEEEEEESSCC-EEEEEEESEEEEEEECTTS-------------------------CEEEEEEEETTCEEE
T ss_pred             EEEeec-CcEeeeeECCCCC-EEEEEEeceEEEEEEeCCC-------------------------cEEEEeEecCCcEEE
Confidence            355665 4569999988754 6899999999999998752                         134678899999999


Q ss_pred             eCCCCeEEEEeCCCc
Q psy12281        312 VPSGWHHQVTNLEHT  326 (456)
Q Consensus       312 IPsgW~H~V~nl~~s  326 (456)
                      ||.|+.|...+-.+.
T Consensus       380 ~P~G~~H~~~ag~e~  394 (466)
T 3kgl_A          380 IPQGFSVVKRATSEQ  394 (466)
T ss_dssp             ECTTCEEEEEECSSE
T ss_pred             ECCCCeEEEEcCCCC
Confidence            999999988554443

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=94.25  E-value=0.11  Score=51.51  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=50.9

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC-C---C
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA-G---D  308 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p-G---D  308 (456)
                      +..-..|+...+|+... +.-+...|.|+=++.|..+...                         +.  ..+++ |   +
T Consensus       276 ls~~~~g~~rg~h~h~~-~~e~~~~~~G~~~~~~~~~~~~-------------------------~~--~~~~~~~~~~~  327 (369)
T 3st7_A          276 VNISKPGITKGNHWHHT-KNEKFLVVSGKGVIRFRHVNDD-------------------------EI--IEYYVSGDKLE  327 (369)
T ss_dssp             EEEECTTCEEEEEECSS-CCEEEEEEESEEEEEEEETTCC-------------------------CC--EEEEEETTBCC
T ss_pred             EEEecCCceeccccccC-cceEEEEEeeeEEEEEEcCCCC-------------------------cE--EEEEecCCcce
Confidence            34445677788888764 4456888999988888644321                         12  33333 6   9


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEeecCC
Q psy12281        309 SIFVPSGWHHQVTNLEHTISINHNWIN  335 (456)
Q Consensus       309 ~LfIPsgW~H~V~nl~~sIsvn~~~~~  335 (456)
                      +||||+||||...|+++.-.+-..|.+
T Consensus       328 ~~~ip~g~~h~~~n~~~~~~~~~~~~~  354 (369)
T 3st7_A          328 VVDIPVGYTHNIENLGDTDMVTIMWVN  354 (369)
T ss_dssp             EEEECTTEEEEEEECSSSCEEEEEEES
T ss_pred             EEEeCCCceEEeEEcCCCcEEEEEecC
Confidence            999999999999999953334444444

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=94.24  E-value=0.13  Score=41.83  Aligned_cols=62  Identities=26%  Similarity=0.205  Sum_probs=45.8

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|...+.|.....-+  ..++.|+=...+   +                            .-+.++.|||+++||++-
T Consensus        42 ~pg~~~~~H~H~~~e~--~~vl~G~~~~~~---~----------------------------~~~~~l~~Gd~~~ip~~~   88 (116)
T 2pfw_A           42 DKGAEGYVHAHRHSQV--SYVVEGEFHVNV---D----------------------------GVIKVLTAGDSFFVPPHV   88 (116)
T ss_dssp             CTTEEEEEECCSSEEE--EEEEEECEEEEE---T----------------------------TEEEEECTTCEEEECTTC
T ss_pred             CCCCcCCcEECCcceE--EEEEeeEEEEEE---C----------------------------CEEEEeCCCCEEEECcCC
Confidence            3445578888765544  778888866655   1                            115789999999999999


Q ss_pred             eEEEEeCCCcEEEEe
Q psy12281        317 HHQVTNLEHTISINH  331 (456)
Q Consensus       317 ~H~V~nl~~sIsvn~  331 (456)
                      .|...|.+++..+..
T Consensus        89 ~H~~~~~~~~~~l~v  103 (116)
T 2pfw_A           89 DHGAVCPTGGILIDT  103 (116)
T ss_dssp             CEEEEESSCEEEEEE
T ss_pred             ceeeEeCCCcEEEEE
Confidence            999999988655444

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=94.21  E-value=0.15  Score=41.97  Aligned_cols=61  Identities=16%  Similarity=0.116  Sum_probs=45.7

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|...+.|......+  ..++.|+=++.+                               ..-+..++|||+++||++=
T Consensus        44 ~~G~~~~~H~H~~~e~--~~Vl~G~~~~~i-------------------------------~~~~~~l~~Gd~i~ip~~~   90 (114)
T 3fjs_A           44 PAGKQVGSHSVAGPST--IQCLEGEVEIGV-------------------------------DGAQRRLHQGDLLYLGAGA   90 (114)
T ss_dssp             CTTCEEEEECCSSCEE--EEEEESCEEEEE-------------------------------TTEEEEECTTEEEEECTTC
T ss_pred             CCCCccCceeCCCcEE--EEEEECEEEEEE-------------------------------CCEEEEECCCCEEEECCCC
Confidence            4456688888776655  777888766554                               0125789999999999999


Q ss_pred             eEEEEeCCCcEEEE
Q psy12281        317 HHQVTNLEHTISIN  330 (456)
Q Consensus       317 ~H~V~nl~~sIsvn  330 (456)
                      .|.+.|.+++..+.
T Consensus        91 ~H~~~~~~~~~~~~  104 (114)
T 3fjs_A           91 AHDVNAITNTSLLV  104 (114)
T ss_dssp             CEEEEESSSEEEEE
T ss_pred             cEEEEeCCCcEEEE
Confidence            99999998854433

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=94.17  E-value=0.034  Score=55.86  Aligned_cols=27  Identities=22%  Similarity=0.192  Sum_probs=24.6

Q ss_pred             EEEEEcCCCEEEeCCCCeEEEEeCCCc
Q psy12281        300 IIVEQEAGDSIFVPSGWHHQVTNLEHT  326 (456)
Q Consensus       300 ~~~~l~pGD~LfIPsgW~H~V~nl~~s  326 (456)
                      -++.+++||++++|+|.||+..|.++.
T Consensus       142 ~~~~~~~GD~v~iP~g~~H~~~N~gde  168 (368)
T 3nw4_A          142 DPVRMSRGDLLLTPGWCFHGHMNDTDQ  168 (368)
T ss_dssp             EEEEEETTCEEEECTTCCEEEEECSSS
T ss_pred             EEEEEeCCCEEEECCCCcEEeEeCCCC
Confidence            478999999999999999999998774

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=94.13  E-value=0.12  Score=51.24  Aligned_cols=64  Identities=23%  Similarity=0.504  Sum_probs=48.5

Q ss_pred             eeeCCCCCcccccccc-cCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        233 VYMGPKETWTPLHADV-FHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~-~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      +.+-+ |...++|+.. ..  -|..++.|+=++.+..++.                          +.....+++||++|
T Consensus        57 ~~l~p-g~~~~~H~H~~~~--E~~yVl~G~~~~~v~~~~g--------------------------~~~~~~l~~GD~~~  107 (361)
T 2vqa_A           57 MSLEP-GAIRELHWHANAA--EWAYVMEGRTRITLTSPEG--------------------------KVEIADVDKGGLWY  107 (361)
T ss_dssp             EEECT-TCEEEEEECTTCC--EEEEEEESEEEEEEECTTS--------------------------CEEEEEEETTEEEE
T ss_pred             EEEcC-CCCCCceeCCCCC--EEEEEEEeEEEEEEEeCCC--------------------------cEEEEEEcCCCEEE
Confidence            44555 4456788776 44  4589999999999876642                          12247899999999


Q ss_pred             eCCCCeEEEEeCCC
Q psy12281        312 VPSGWHHQVTNLEH  325 (456)
Q Consensus       312 IPsgW~H~V~nl~~  325 (456)
                      ||+|.+|...|.++
T Consensus       108 ip~g~~H~~~n~~~  121 (361)
T 2vqa_A          108 FPRGWGHSIEGIGP  121 (361)
T ss_dssp             ECTTCEEEEEECSS
T ss_pred             ECCCCeEEEEeCCC
Confidence            99999999999974

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=94.07  E-value=0.022  Score=46.11  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=23.6

Q ss_pred             EEEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        300 IIVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       300 ~~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      .+..+.+||.+|||.|-+|++.|.++
T Consensus        59 ~~~~l~~G~~~~ip~G~~H~~~N~g~   84 (98)
T 3lag_A           59 SLAQLKTGRSYARKAGVQHDVRNEST   84 (98)
T ss_dssp             ECCCBCTTCCEEECTTCEEEEBCCSS
T ss_pred             EEEEecCCcEEEEcCCCcEECEECCC
Confidence            45678999999999999999999987

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=94.04  E-value=0.13  Score=42.56  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=46.9

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|..++.|.....-+  ..++.|+=++.+   +                            .-+..+.|||+++||+|=
T Consensus        49 ~pg~~~~~H~H~~~e~--~~vl~G~~~~~~---~----------------------------~~~~~l~~Gd~~~ip~~~   95 (126)
T 4e2g_A           49 EPNTEMPAHEHPHEQA--GVMLEGTLELTI---G----------------------------EETRVLRPGMAYTIPGGV   95 (126)
T ss_dssp             CTTCEEEEECCSSEEE--EEEEEECEEEEE---T----------------------------TEEEEECTTEEEEECTTC
T ss_pred             CCCCcCCCccCCCceE--EEEEEeEEEEEE---C----------------------------CEEEEeCCCCEEEECCCC
Confidence            3455578898876554  788898876655   0                            124789999999999999


Q ss_pred             eEEEEeCCC-cEEEEe
Q psy12281        317 HHQVTNLEH-TISINH  331 (456)
Q Consensus       317 ~H~V~nl~~-sIsvn~  331 (456)
                      .|.+.|.++ +..+..
T Consensus        96 ~H~~~~~~~~~~~l~v  111 (126)
T 4e2g_A           96 RHRARTFEDGCLVLDI  111 (126)
T ss_dssp             CEEEECCTTCEEEEEE
T ss_pred             cEEeEECCCCEEEEEE
Confidence            999999988 554443

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=94.00  E-value=0.23  Score=40.28  Aligned_cols=61  Identities=15%  Similarity=0.133  Sum_probs=45.0

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|...+.|......+  ..++.|+-...+   +                            .-+..+.|||+++||+|=
T Consensus        48 ~~g~~~~~H~H~~~e~--~~vl~G~~~~~~---~----------------------------~~~~~l~~Gd~~~ip~~~   94 (115)
T 1yhf_A           48 DKGQEIGRHSSPGDAM--VTILSGLAEITI---D----------------------------QETYRVAEGQTIVMPAGI   94 (115)
T ss_dssp             CTTCEEEEECCSSEEE--EEEEESEEEEEE---T----------------------------TEEEEEETTCEEEECTTS
T ss_pred             CCCCccCCEECCCcEE--EEEEeCEEEEEE---C----------------------------CEEEEECCCCEEEECCCC
Confidence            3455577888765444  788888876665   0                            114789999999999999


Q ss_pred             eEEEEeCCCcEEEE
Q psy12281        317 HHQVTNLEHTISIN  330 (456)
Q Consensus       317 ~H~V~nl~~sIsvn  330 (456)
                      .|...|.+++..+.
T Consensus        95 ~H~~~~~~~~~~~~  108 (115)
T 1yhf_A           95 PHALYAVEAFQMLL  108 (115)
T ss_dssp             CEEEEESSCEEEEE
T ss_pred             CEEEEECCCceEEE
Confidence            99999998754443

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=94.00  E-value=0.17  Score=40.18  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=23.9

Q ss_pred             EEEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        300 IIVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       300 ~~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      -+.++.|||++++|++-.|.+.|.++
T Consensus        59 ~~~~l~~Gd~~~~p~~~~H~~~N~g~   84 (97)
T 2fqp_A           59 VTSQLTRGVSYTRPEGVEHNVINPSD   84 (97)
T ss_dssp             EEEEECTTCCEEECTTCEEEEECCSS
T ss_pred             EEEEEcCCCEEEeCCCCcccCEeCCC
Confidence            35789999999999999999999886

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=93.73  E-value=0.14  Score=51.22  Aligned_cols=61  Identities=15%  Similarity=0.110  Sum_probs=46.3

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|..+++|.....  .|+.++.|+=+.++   +                            ..+..+++||++|||++.
T Consensus       276 ~pG~~~~~H~h~~~--ev~~v~~G~g~~~v---~----------------------------~~~~~~~~GD~~~vP~~~  322 (354)
T 2d40_A          276 PKGFASRVARTTDS--TIYHVVEGSGQVII---G----------------------------NETFSFSAKDIFVVPTWH  322 (354)
T ss_dssp             CTTCBCCCBEESSC--EEEEEEEEEEEEEE---T----------------------------TEEEEEETTCEEEECTTC
T ss_pred             CCCCCCCceecCCc--EEEEEEeCeEEEEE---C----------------------------CEEEEEcCCCEEEECCCC
Confidence            45666888887765  45888888877776   1                            125899999999999999


Q ss_pred             eEEEEeCCCcEEEE
Q psy12281        317 HHQVTNLEHTISIN  330 (456)
Q Consensus       317 ~H~V~nl~~sIsvn  330 (456)
                      +|+..|.++...+.
T Consensus       323 ~H~~~n~e~~~l~~  336 (354)
T 2d40_A          323 GVSFQTTQDSVLFS  336 (354)
T ss_dssp             CEEEEEEEEEEEEE
T ss_pred             eEEEEeCCCEEEEE
Confidence            99999976544443

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=93.58  E-value=0.18  Score=51.18  Aligned_cols=25  Identities=20%  Similarity=0.145  Sum_probs=23.2

Q ss_pred             EEEEEcCCCEEEeCCCCeEEEEeCC
Q psy12281        300 IIVEQEAGDSIFVPSGWHHQVTNLE  324 (456)
Q Consensus       300 ~~~~l~pGD~LfIPsgW~H~V~nl~  324 (456)
                      -++.++|||+++||+|.||+..|.+
T Consensus       332 e~~~~~~GD~~~iP~g~~H~~~N~g  356 (394)
T 3bu7_A          332 KRFDWSEHDIFCVPAWTWHEHCNTQ  356 (394)
T ss_dssp             EEEEECTTCEEEECTTCCEEEEECC
T ss_pred             EEEEEeCCCEEEECCCCeEEeEeCC
Confidence            4789999999999999999999986

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=93.53  E-value=0.17  Score=51.46  Aligned_cols=72  Identities=14%  Similarity=0.117  Sum_probs=55.2

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-+.+ |+..++|+.+.. ..|..++.|+=+..++.|....   ...                ..+.+...+++||+++|
T Consensus       244 v~l~p-G~~~~PH~h~~A-~Ei~yVl~G~g~v~vv~~~~~~---~~~----------------g~~~~~~~l~~GDV~vv  302 (397)
T 2phl_A          244 IEMEE-GALFVPHYYSKA-IVILVVNEGEAHVELVGPKGNK---ETL----------------EYESYRAELSKDDVFVI  302 (397)
T ss_dssp             EEECT-TEEEEEEEESSC-EEEEEEEESEEEEEEEEECC-----CCS----------------CEEEEEEEEETTCEEEE
T ss_pred             EEEcC-CcEeeeeEcCCC-CEEEEEEeeeEEEEEEeccccc---cCC----------------CceEEEEEecCCCEEEE
Confidence            45555 556999998854 5789999999999999774321   000                13577899999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |.|+.|...|.++
T Consensus       303 P~G~~h~~~n~~~  315 (397)
T 2phl_A          303 PAAYPVAIKATSN  315 (397)
T ss_dssp             CTTCCEEEEESSS
T ss_pred             CCCCeEEEEeCCC
Confidence            9999999999974

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=93.52  E-value=0.24  Score=51.25  Aligned_cols=71  Identities=13%  Similarity=0.110  Sum_probs=54.5

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-+.+. +..++|+.+..+ .|..++.|+=+..++.|.-                         .+.+..++++||+++
T Consensus       327 ~v~l~pG-gm~~PHwHp~A~-Ei~yV~~G~~~v~vV~~~g-------------------------~~~f~~~l~~GDVfv  379 (465)
T 3qac_A          327 KGVLYRN-AMMAPHYNLNAH-NIMYCVRGRGRIQIVNDQG-------------------------QSVFDEELSRGQLVV  379 (465)
T ss_dssp             EEEECTT-CEEEEEEESSCC-EEEEEEEEEEEEEEECTTS-------------------------CEEEEEEEETTCEEE
T ss_pred             EEEecCC-cEeeeEECCCCC-EEEEEEeCCEEEEEEeCCC-------------------------cEEEEEEecCCeEEE
Confidence            4556664 458999988754 7899999999999998752                         135667899999999


Q ss_pred             eCCCCeEEEEeCCCcEEE
Q psy12281        312 VPSGWHHQVTNLEHTISI  329 (456)
Q Consensus       312 IPsgW~H~V~nl~~sIsv  329 (456)
                      ||.|+.|...+-++.+.+
T Consensus       380 vP~g~~h~~~ag~e~~~~  397 (465)
T 3qac_A          380 VPQNFAIVKQAFEDGFEW  397 (465)
T ss_dssp             ECTTCEEEEEEEEEEEEE
T ss_pred             ECCCcEEEEEcCCCCeEE
Confidence            999999988665444433

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=93.50  E-value=0.1  Score=43.16  Aligned_cols=60  Identities=18%  Similarity=0.144  Sum_probs=42.1

Q ss_pred             eeCCCCCccccccccc-CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        234 YMGPKETWTPLHADVF-HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       234 ~iG~~gs~T~lH~D~~-~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      .+.| |..+++|.... .-+  ..++.|+=++.+-            +                  .-+..++|||+++|
T Consensus        45 ~~~p-g~~~~~H~H~~~~e~--~~Vl~G~~~~~~~------------~------------------~~~~~l~~Gd~~~i   91 (125)
T 3h8u_A           45 HAHP-GQEIASHVHPHGQDT--WTVISGEAEYHQG------------N------------------GIVTHLKAGDIAIA   91 (125)
T ss_dssp             EECT-TCEECCC-CTTCEEE--EEEEECEEEEECS------------T------------------TCEEEEETTEEEEE
T ss_pred             EECC-CCcCCcccCCCCeEE--EEEEEeEEEEEEC------------C------------------CeEEEeCCCCEEEE
Confidence            3444 55688998774 333  6688988655330            0                  11578999999999


Q ss_pred             CCCCeEEEEeCCCc
Q psy12281        313 PSGWHHQVTNLEHT  326 (456)
Q Consensus       313 PsgW~H~V~nl~~s  326 (456)
                      |+|-.|.+.|.++.
T Consensus        92 ~~~~~H~~~n~~~~  105 (125)
T 3h8u_A           92 KPGQVHGAMNSGPE  105 (125)
T ss_dssp             CTTCCCEEEECSSS
T ss_pred             CCCCEEEeEeCCCC
Confidence            99999999998763

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=93.49  E-value=0.15  Score=48.16  Aligned_cols=77  Identities=14%  Similarity=0.157  Sum_probs=46.9

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|...++|+.... .-|..++.|+=++.+ +-.+...+-..    +.+..+      ...+.....++|||++|||+|-
T Consensus        51 ~PG~~~~~H~H~~~-~E~~yVLeG~~~~~v-~~~~~~~~~~~----~~~~~~------~~~~~~~~~l~~GD~i~iP~g~  118 (239)
T 2xlg_A           51 PPGGGPMPHIHYFI-NEWFWTPEGGIELFH-STKQYPNMDEL----PVVGGA------GRGDLYSIQSEPKQLIYSPNHY  118 (239)
T ss_dssp             CTTCSCCSEEESSE-EEEEEETTCCCEEEE-EEEECCCTTSC----CSTTTT------CCEEEEEEECCTTEEEEECTTE
T ss_pred             CCCCcCCCeECCCc-cEEEEEEEeEEEEEE-EecccccCCCc----cccccc------ccCceeEEEECCCCEEEECCCC
Confidence            45666888887632 224778888877766 10000000000    000000      0134568899999999999999


Q ss_pred             eEEEEeCCC
Q psy12281        317 HHQVTNLEH  325 (456)
Q Consensus       317 ~H~V~nl~~  325 (456)
                      .|...|.++
T Consensus       119 ~H~~~N~~~  127 (239)
T 2xlg_A          119 MHGFVNPTD  127 (239)
T ss_dssp             EEEEECCSS
T ss_pred             CEEEEeCCC
Confidence            999999987

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=93.44  E-value=0.21  Score=49.47  Aligned_cols=60  Identities=20%  Similarity=0.366  Sum_probs=45.5

Q ss_pred             CCCccccccccc-CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        238 KETWTPLHADVF-HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       238 ~gs~T~lH~D~~-~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      +|+..++|.... ..  +..++.|+=+..++.++.                          +..+..+++||+++||+|.
T Consensus       243 pg~~~~~H~H~~~~E--~~~Vl~G~~~~~v~~~~g--------------------------~~~~~~l~~GD~~~ip~~~  294 (361)
T 2vqa_A          243 PGAMRQLHWHPNADE--WQYVLDGEMDLTVFASEG--------------------------KASVSRLQQGDVGYVPKGY  294 (361)
T ss_dssp             TTCEEEEEECSSCCE--EEEEEESCEEEEEECSTT--------------------------CEEEEEECTTCEEEECTTC
T ss_pred             CCcccccccCCCCCE--EEEEEeCEEEEEEEcCCC--------------------------cEEEEEECCCCEEEECCCC
Confidence            345577787765 33  478899988888765432                          1236889999999999999


Q ss_pred             eEEEEeCCC
Q psy12281        317 HHQVTNLEH  325 (456)
Q Consensus       317 ~H~V~nl~~  325 (456)
                      +|...|.++
T Consensus       295 ~H~~~n~~~  303 (361)
T 2vqa_A          295 GHAIRNSSQ  303 (361)
T ss_dssp             EEEEECCSS
T ss_pred             eEEeEECCC
Confidence            999999876

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=93.40  E-value=0.3  Score=43.57  Aligned_cols=73  Identities=16%  Similarity=0.246  Sum_probs=55.9

Q ss_pred             CccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCC
Q psy12281        228 DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAG  307 (456)
Q Consensus       228 ~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pG  307 (456)
                      .++..+.+|++++.+.+|.++.+-+  +.|+.|.=...+-..                           .+...+++++|
T Consensus        34 ~~~~V~~v~Gpn~r~d~H~h~~dE~--FyvlkG~m~i~v~d~---------------------------g~~~~v~l~eG   84 (174)
T 1yfu_A           34 SDFIVTVVGGPNHRTDYHDDPLEEF--FYQLRGNAYLNLWVD---------------------------GRRERADLKEG   84 (174)
T ss_dssp             CSEEEEEECSCBCCCCEEECSSCEE--EEEEESCEEEEEEET---------------------------TEEEEEEECTT
T ss_pred             CcEEEEEEcCCCcCccCcCCCCceE--EEEEeeEEEEEEEcC---------------------------CceeeEEECCC
Confidence            4566778899999999999877765  899998755554211                           12457999999


Q ss_pred             CEEEeCCCCeEEEEeCC-CcEEE
Q psy12281        308 DSIFVPSGWHHQVTNLE-HTISI  329 (456)
Q Consensus       308 D~LfIPsgW~H~V~nl~-~sIsv  329 (456)
                      |+..||+|=-|.....+ +++.+
T Consensus        85 E~f~lP~gvpH~P~r~~~e~~~l  107 (174)
T 1yfu_A           85 DIFLLPPHVRHSPQRPEAGSACL  107 (174)
T ss_dssp             CEEEECTTCCEEEEBCCTTCEEE
T ss_pred             CEEEeCCCCCcCccccCCCCEEE
Confidence            99999999999997666 55444

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=93.39  E-value=0.2  Score=50.35  Aligned_cols=32  Identities=19%  Similarity=0.089  Sum_probs=28.1

Q ss_pred             EEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEe
Q psy12281        300 IIVEQEAGDSIFVPSGWHHQVTNLEHTISINH  331 (456)
Q Consensus       300 ~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~  331 (456)
                      .++..++||+++||++.||+..|.++++-+.+
T Consensus       317 ~~~~w~~gD~fvvP~w~~h~~~n~~~a~Lf~~  348 (368)
T 3nw4_A          317 ETTKLEKGDMFVVPSWVPWSLQAETQFDLFRF  348 (368)
T ss_dssp             EEEEECTTCEEEECTTCCEEEEESSSEEEEEE
T ss_pred             EEEEecCCCEEEECCCCcEEEEeCCCEEEEEE
Confidence            46899999999999999999999988766654

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=93.35  E-value=0.12  Score=52.76  Aligned_cols=65  Identities=15%  Similarity=0.079  Sum_probs=50.0

Q ss_pred             cceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCE
Q psy12281        230 YRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDS  309 (456)
Q Consensus       230 ~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~  309 (456)
                      ...+-+.|.+ ..++|+  ....-|..++.|+=+..++.|+.                           ..+..+++||+
T Consensus        51 ~~~~~l~PGg-~~~pHh--~~a~E~~yVl~G~g~v~~v~~~~---------------------------~~~~~l~~GDv  100 (416)
T 1uij_A           51 IVQFQSKPNT-ILLPHH--ADADFLLFVLSGRAILTLVNNDD---------------------------RDSYNLHPGDA  100 (416)
T ss_dssp             EEEEEECTTE-EEEEEE--ESEEEEEEEEESCEEEEEECSSC---------------------------EEEEEECTTEE
T ss_pred             EEEEEeccCc-Cccccc--CCCceEEEEEeeEEEEEEEECCC---------------------------CeEEEecCCCE
Confidence            3456677755 578882  34556789999999998876632                           23578999999


Q ss_pred             EEeCCCCeEEEEeCC
Q psy12281        310 IFVPSGWHHQVTNLE  324 (456)
Q Consensus       310 LfIPsgW~H~V~nl~  324 (456)
                      ++||+|..|.+.|.+
T Consensus       101 ~~iP~G~~H~~~N~g  115 (416)
T 1uij_A          101 QRIPAGTTYYLVNPH  115 (416)
T ss_dssp             EEECTTCEEEEEECC
T ss_pred             EEECCCCeEEEEecC
Confidence            999999999999994

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=93.32  E-value=0.21  Score=39.17  Aligned_cols=55  Identities=18%  Similarity=0.110  Sum_probs=40.5

Q ss_pred             CCCccccccccc-CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        238 KETWTPLHADVF-HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       238 ~gs~T~lH~D~~-~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      +|...+.|.... .-+  ..++.|+=...+   +                            .-+..+.|||++++|+|-
T Consensus        37 pg~~~~~H~H~~~~e~--~~v~~G~~~~~~---~----------------------------~~~~~l~~Gd~~~ip~~~   83 (105)
T 1v70_A           37 PGQAQKVHVHEGSDKV--YYALEGEVVVRV---G----------------------------EEEALLAPGMAAFAPAGA   83 (105)
T ss_dssp             TTCEEEEECCSSCEEE--EEEEESCEEEEE---T----------------------------TEEEEECTTCEEEECTTS
T ss_pred             CCCcCCccCCCCCcEE--EEEEeCEEEEEE---C----------------------------CEEEEeCCCCEEEECCCC
Confidence            455578888653 234  678888766554   0                            125789999999999999


Q ss_pred             eEEEEeCCC
Q psy12281        317 HHQVTNLEH  325 (456)
Q Consensus       317 ~H~V~nl~~  325 (456)
                      .|...|.++
T Consensus        84 ~H~~~~~~~   92 (105)
T 1v70_A           84 PHGVRNESA   92 (105)
T ss_dssp             CEEEECCSS
T ss_pred             cEEeEeCCC
Confidence            999999875

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=93.32  E-value=0.14  Score=52.71  Aligned_cols=65  Identities=17%  Similarity=0.076  Sum_probs=50.2

Q ss_pred             cceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCE
Q psy12281        230 YRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDS  309 (456)
Q Consensus       230 ~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~  309 (456)
                      ...+-+.|.+. .++|  ..+..-|..++.|+=+..++.|+.                           ..+..+++||+
T Consensus        63 ~~~~~l~PGg~-~~pH--h~~a~Ei~yVl~G~g~v~~v~~~~---------------------------~~~~~l~~GDv  112 (434)
T 2ea7_A           63 VVEFKSKPNTL-LLPH--HADADFLLVVLNGTAVLTLVNPDS---------------------------RDSYILEQGHA  112 (434)
T ss_dssp             EEEEEECTTEE-EEEE--EESEEEEEEEEESEEEEEEECSSC---------------------------EEEEEEETTEE
T ss_pred             EEEEEecCCcC-ccCc--cCCCceEEEEEecEEEEEEEeCCC---------------------------CEEEEeCCCCE
Confidence            34566677554 7888  334556799999999988876532                           23578999999


Q ss_pred             EEeCCCCeEEEEeCC
Q psy12281        310 IFVPSGWHHQVTNLE  324 (456)
Q Consensus       310 LfIPsgW~H~V~nl~  324 (456)
                      ++||+|..|.+.|.+
T Consensus       113 ~~iP~G~~H~~~N~g  127 (434)
T 2ea7_A          113 QKIPAGTTFFLVNPD  127 (434)
T ss_dssp             EEECTTCEEEEEECC
T ss_pred             EEECCCccEEEEeCC
Confidence            999999999999997

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=93.23  E-value=0.27  Score=43.50  Aligned_cols=56  Identities=13%  Similarity=0.158  Sum_probs=43.2

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|..+++|.....-+  ..++.|+=...+                               ..-+..++|||++|||+|-
T Consensus        64 ~pG~~~~~H~H~~~E~--~~Vl~G~~~~~i-------------------------------~~~~~~l~~Gd~i~ip~~~  110 (167)
T 3ibm_A           64 EPGGYTTLERHEHTHV--VMVVRGHAEVVL-------------------------------DDRVEPLTPLDCVYIAPHA  110 (167)
T ss_dssp             CTTCBCCCBBCSSCEE--EEEEESEEEEEE-------------------------------TTEEEEECTTCEEEECTTC
T ss_pred             CCCCCCCCccCCCcEE--EEEEeCEEEEEE-------------------------------CCEEEEECCCCEEEECCCC
Confidence            3455588888876655  778888866654                               0125789999999999999


Q ss_pred             eEEEEeCC-C
Q psy12281        317 HHQVTNLE-H  325 (456)
Q Consensus       317 ~H~V~nl~-~  325 (456)
                      .|+..|.+ +
T Consensus       111 ~H~~~n~~~~  120 (167)
T 3ibm_A          111 WHQIHATGAN  120 (167)
T ss_dssp             CEEEEEESSS
T ss_pred             cEEEEeCCCC
Confidence            99999987 5

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=93.19  E-value=0.23  Score=43.38  Aligned_cols=64  Identities=16%  Similarity=0.118  Sum_probs=46.5

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|..+++|.....-+  ..++.|+=+..+-.++...                      +...-+..++|||+++||+|-
T Consensus        49 ~pg~~~~~H~H~~~E~--~~Vl~G~~~~~~~~~~~~~----------------------~~~~~~~~l~~Gd~i~ip~~~  104 (163)
T 1lr5_A           49 SPGQRTPIHRHSCEEV--FTVLKGKGTLLMGSSSLKY----------------------PGQPQEIPFFQNTTFSIPVND  104 (163)
T ss_dssp             CTTCBCCEEEESSCEE--EEEEECCEEEEECCSSSSS----------------------CCSCEEEEECTTEEEEECTTC
T ss_pred             CCCCcCCCeECCCCeE--EEEEeCEEEEEECCccccc----------------------cCccEEEEeCCCCEEEECCCC
Confidence            3455688898876554  7889998877764321100                      012356899999999999999


Q ss_pred             eEEEEeCC
Q psy12281        317 HHQVTNLE  324 (456)
Q Consensus       317 ~H~V~nl~  324 (456)
                      .|+..|.+
T Consensus       105 ~H~~~n~~  112 (163)
T 1lr5_A          105 PHQVWNSD  112 (163)
T ss_dssp             CEEEECCC
T ss_pred             cEEeEeCC
Confidence            99999987

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=93.14  E-value=0.28  Score=39.78  Aligned_cols=60  Identities=8%  Similarity=0.021  Sum_probs=43.9

Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCe
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWH  317 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~  317 (456)
                      +|...+.|.....-+  ..++.|+=.+.+   +                            .-+..++|||+++||++=.
T Consensus        47 ~g~~~~~H~h~~~e~--~~vl~G~~~~~i---~----------------------------~~~~~l~~Gd~i~i~~~~~   93 (114)
T 2ozj_A           47 DGESVSEEEYFGDTL--YLILQGEAVITF---D----------------------------DQKIDLVPEDVLMVPAHKI   93 (114)
T ss_dssp             TTSSCCCBCCSSCEE--EEEEEEEEEEEE---T----------------------------TEEEEECTTCEEEECTTCC
T ss_pred             CCCccccEECCCCeE--EEEEeCEEEEEE---C----------------------------CEEEEecCCCEEEECCCCc
Confidence            345577787665555  778888866655   0                            1257899999999999999


Q ss_pred             EEEEeCCCcEEEE
Q psy12281        318 HQVTNLEHTISIN  330 (456)
Q Consensus       318 H~V~nl~~sIsvn  330 (456)
                      |.+.|.+++..+.
T Consensus        94 H~~~~~~~~~~~~  106 (114)
T 2ozj_A           94 HAIAGKGRFKMLQ  106 (114)
T ss_dssp             BEEEEEEEEEEEE
T ss_pred             EEEEeCCCcEEEE
Confidence            9999987654443

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=93.08  E-value=0.49  Score=42.18  Aligned_cols=78  Identities=15%  Similarity=0.223  Sum_probs=59.2

Q ss_pred             CccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCC
Q psy12281        228 DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAG  307 (456)
Q Consensus       228 ~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pG  307 (456)
                      .++..+++|+++..+.+|.|+.+-+  +.|+.|.=.-.+...+..                       ..+..++.+++|
T Consensus        33 ~~~~V~~vgGPn~r~D~H~~~~eE~--Fy~lkG~m~l~v~d~g~~-----------------------~~~~~dv~i~eG   87 (176)
T 1zvf_A           33 GGFTVMIVGGPNERTDYHINPTPEW--FYQKKGSMLLKVVDETDA-----------------------EPKFIDIIINEG   87 (176)
T ss_dssp             SSEEEEEECSSBCCSCEEECSSCEE--EEEEESCEEEEEEECSSS-----------------------SCEEEEEEECTT
T ss_pred             CCEEEEEEcCCCcCCcCcCCCCceE--EEEEeCEEEEEEEcCCCc-----------------------ccceeeEEECCC
Confidence            3667789999889999998887765  999999866665432110                       013567999999


Q ss_pred             CEEEeCCCCeEEEEeCCCcEEEE
Q psy12281        308 DSIFVPSGWHHQVTNLEHTISIN  330 (456)
Q Consensus       308 D~LfIPsgW~H~V~nl~~sIsvn  330 (456)
                      |+..+|+|=-|.....++++.+=
T Consensus        88 dmfllP~gvpHsP~r~~e~v~lv  110 (176)
T 1zvf_A           88 DSYLLPGNVPHSPVRFADTVGIV  110 (176)
T ss_dssp             EEEEECTTCCEEEEECTTCEEEE
T ss_pred             CEEEcCCCCCcCCcccCCcEEEE
Confidence            99999999999996667666653

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=92.96  E-value=0.19  Score=44.02  Aligned_cols=55  Identities=22%  Similarity=0.285  Sum_probs=42.9

Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCe
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWH  317 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~  317 (456)
                      +|..+++|.....-+  ..++.|+=++.+   +                            .-+.+++|||++|||++-+
T Consensus        53 pG~~~~~H~H~~~E~--~~Vl~G~~~v~v---~----------------------------g~~~~l~~Gd~i~ip~~~~   99 (156)
T 3kgz_A           53 EGGYSTLERHAHVHA--VMIHRGHGQCLV---G----------------------------ETISDVAQGDLVFIPPMTW   99 (156)
T ss_dssp             EEEECCCBBCSSCEE--EEEEEEEEEEEE---T----------------------------TEEEEEETTCEEEECTTCC
T ss_pred             CCCccCceeCCCcEE--EEEEeCEEEEEE---C----------------------------CEEEEeCCCCEEEECCCCc
Confidence            445578888776544  778888877665   0                            1257899999999999999


Q ss_pred             EEEEeCCC
Q psy12281        318 HQVTNLEH  325 (456)
Q Consensus       318 H~V~nl~~  325 (456)
                      |++.|.++
T Consensus       100 H~~~n~g~  107 (156)
T 3kgz_A          100 HQFRANRG  107 (156)
T ss_dssp             EEEECCSS
T ss_pred             EEeEeCCC
Confidence            99999877

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=92.94  E-value=0.33  Score=39.62  Aligned_cols=56  Identities=16%  Similarity=0.181  Sum_probs=42.4

Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEE-EEcCCCEEEeCCCC
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIV-EQEAGDSIFVPSGW  316 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~-~l~pGD~LfIPsgW  316 (456)
                      +|..++.|.....-+  ..++.|+=++.+   +         +.                   +. .+.|||+++||+|-
T Consensus        36 pg~~~~~H~H~~~e~--~~Vl~G~~~~~i---~---------~~-------------------~~~~l~~Gd~i~ip~~~   82 (117)
T 2b8m_A           36 RGEQMPKHYSNSYVH--LIIIKGEMTLTL---E---------DQ-------------------EPHNYKEGNIVYVPFNV   82 (117)
T ss_dssp             TTCBCCCEECSSCEE--EEEEESEEEEEE---T---------TS-------------------CCEEEETTCEEEECTTC
T ss_pred             CCCcCCCEeCCCcEE--EEEEeCEEEEEE---C---------CE-------------------EEEEeCCCCEEEECCCC
Confidence            345578888765544  778999877766   1         00                   13 78999999999999


Q ss_pred             eEEEEeCCCc
Q psy12281        317 HHQVTNLEHT  326 (456)
Q Consensus       317 ~H~V~nl~~s  326 (456)
                      .|...|.+++
T Consensus        83 ~H~~~~~~~~   92 (117)
T 2b8m_A           83 KMLIQNINSD   92 (117)
T ss_dssp             EEEEECCSSS
T ss_pred             cEEeEcCCCC
Confidence            9999998874

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=92.82  E-value=0.46  Score=43.94  Aligned_cols=76  Identities=18%  Similarity=0.073  Sum_probs=51.1

Q ss_pred             eeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeC
Q psy12281        234 YMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVP  313 (456)
Q Consensus       234 ~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIP  313 (456)
                      +.=++|..||.|=..  +..+..++.|.=+=..|.......+.                    ...-+.++.|||+.+++
T Consensus        78 l~W~PGq~spiHDH~--swg~~~Vl~G~l~e~~y~~~~~g~~~--------------------~~~~~~~l~~G~v~~~~  135 (211)
T 3uss_A           78 FVWGPGQITPVHDHR--VWGLIGMLRGAEYSQPYAFDAGGRPH--------------------PSGARRRLEPGEVEALS  135 (211)
T ss_dssp             EEECTTCBCCSBCCS--SCEEEEEEESCEEEEEEEECTTSCEE--------------------ECSCCEEECTTCEEEEB
T ss_pred             EEECCCCcCCCCCCC--eeEEEEeeeceEEEEEeeeCCCCCcc--------------------cccceEEecCCCEEEEC
Confidence            334567779999544  66778999998777666422211000                    00114789999999999


Q ss_pred             CC--CeEEEEeCC-C--cEEEEe
Q psy12281        314 SG--WHHQVTNLE-H--TISINH  331 (456)
Q Consensus       314 sg--W~H~V~nl~-~--sIsvn~  331 (456)
                      ++  ..|+|.|.. +  +|||..
T Consensus       136 p~~g~IH~V~N~~~d~~avSLHv  158 (211)
T 3uss_A          136 PRIGDVHQVSNAFSDRTSISIHV  158 (211)
T ss_dssp             TTTBCCEEEEESCSSSCEEEEEE
T ss_pred             CCCCCEEEEccCCCCCCEEEEEE
Confidence            77  999999984 3  666665

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=92.72  E-value=0.21  Score=41.89  Aligned_cols=56  Identities=23%  Similarity=0.248  Sum_probs=40.9

Q ss_pred             CCCccccccccc-CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        238 KETWTPLHADVF-HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       238 ~gs~T~lH~D~~-~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++...++|.... ..+  ..++.|+=++.+-            +                  .-...++|||+++||+|-
T Consensus        52 ~g~~~~~H~H~~~~E~--~~vl~G~~~~~~~------------~------------------~~~~~l~~Gd~~~ip~g~   99 (134)
T 2o8q_A           52 KEAKPTWHTHTVGFQL--FYVLRGWVEFEYE------------D------------------IGAVMLEAGGSAFQPPGV   99 (134)
T ss_dssp             ----CCCEEECCSCEE--EEEEESEEEEEET------------T------------------TEEEEEETTCEEECCTTC
T ss_pred             CCCCCCCEECCCCcEE--EEEEeCEEEEEEC------------C------------------cEEEEecCCCEEEECCCC
Confidence            455678898765 555  7889998777661            0                  025789999999999999


Q ss_pred             eEEEEeCCC
Q psy12281        317 HHQVTNLEH  325 (456)
Q Consensus       317 ~H~V~nl~~  325 (456)
                      .|...|.++
T Consensus       100 ~H~~~~~~~  108 (134)
T 2o8q_A          100 RHRELRHSD  108 (134)
T ss_dssp             CEEEEEECT
T ss_pred             cEEeEeCCC
Confidence            999999765

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=92.64  E-value=0.27  Score=50.19  Aligned_cols=84  Identities=11%  Similarity=0.014  Sum_probs=56.0

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-+.+ |+..++|+.+.. ..|..++.|+=+..++.|.-...     |.-     ..+  .-.+.+.+...+++||+++
T Consensus       253 ~~~l~~-g~~~~pH~h~~A-~Ei~~V~~G~~~v~~v~~~g~~~-----~~~-----~~~--~~~~~~~~~~~l~~Gdv~v  318 (416)
T 1uij_A          253 SVDINE-GALLLPHFNSKA-IVILVINEGDANIELVGIKEQQQ-----KQK-----QEE--EPLEVQRYRAELSEDDVFV  318 (416)
T ss_dssp             EEEECT-TEEEEEEEESSC-EEEEEEEESEEEEEEEEEC------------------------CCEEEEEEEEETTCEEE
T ss_pred             EEEEcC-CcEecceEcCCC-cEEEEEEeeEEEEEEEcCCCccc-----ccc-----ccc--cccceEEEEEEecCCcEEE
Confidence            355665 455999998854 56899999999999997753110     000     000  0001246677999999999


Q ss_pred             eCCCCeEEEEeCCCcEEEE
Q psy12281        312 VPSGWHHQVTNLEHTISIN  330 (456)
Q Consensus       312 IPsgW~H~V~nl~~sIsvn  330 (456)
                      ||.|+.|...|.++ +.+-
T Consensus       319 vP~g~~h~~~n~~~-~~~l  336 (416)
T 1uij_A          319 IPAAYPFVVNATSN-LNFL  336 (416)
T ss_dssp             ECTTCCEEEEESSS-EEEE
T ss_pred             ECCCCeEEEEcCCC-eEEE
Confidence            99999999999954 4433

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=92.55  E-value=0.32  Score=50.14  Aligned_cols=77  Identities=14%  Similarity=0.057  Sum_probs=55.1

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-+.+ |+..++|+.+.. ..|..++.|+=+..++.|.-...- ...|+              +.+.++.++++||+++
T Consensus       285 ~v~l~p-g~m~~PH~hp~A-~ei~~V~~G~~~v~vv~~~~~~~~-~~~g~--------------~~~~~~~~l~~GdV~v  347 (445)
T 2cav_A          285 CLQMNE-GALFVPHYNSRA-TVILVANEGRAEVELVGLEQQQQQ-GLESM--------------QLRRYAATLSEGDIIV  347 (445)
T ss_dssp             EEEECT-TEEEEEEEESSC-EEEEEEEESCEEEEEEEC--------------------------CCEEEEEEECTTCEEE
T ss_pred             EEEeeC-CceeeeEECCCC-cEEEEEEeeEEEEEEEeCCCcccc-cccCc--------------ceEEEEeEecCCcEEE
Confidence            355565 456999998865 578999999999999987522100 00010              1346889999999999


Q ss_pred             eCCCCeEEEEeCCC
Q psy12281        312 VPSGWHHQVTNLEH  325 (456)
Q Consensus       312 IPsgW~H~V~nl~~  325 (456)
                      ||.|+.|...|.++
T Consensus       348 vP~g~~h~~~n~~~  361 (445)
T 2cav_A          348 IPSSFPVALKAASD  361 (445)
T ss_dssp             ECTTCCEEEEESSS
T ss_pred             EcCCcEEEEEcCCC
Confidence            99999999999954

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=92.54  E-value=0.65  Score=39.31  Aligned_cols=63  Identities=16%  Similarity=0.220  Sum_probs=46.8

Q ss_pred             CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEE
Q psy12281        250 HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISI  329 (456)
Q Consensus       250 ~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsv  329 (456)
                      ++..-..+++|+=++++|......                       ...-.+...+|+..+||++-||.|+.+++.+.+
T Consensus        38 Gtwg~l~VL~G~L~f~~~~e~g~~-----------------------~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsdd~~f   94 (127)
T 3bb6_A           38 GVYPRLSVMHGAVKYLGYADEHSA-----------------------EPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYF   94 (127)
T ss_dssp             TEEEEEEEEESEEEEEEESSTTCS-----------------------SCSEEEEEEBTBEEECCSSCEEEEEESSTTCEE
T ss_pred             CEEEEEEEEEeEEEEEEECCCCCc-----------------------ceeEEEEeCCCCceEECCCCcEEEEEcCCCEEE
Confidence            445557899999999886543320                       122357888999999999999999998887777


Q ss_pred             EeecCC
Q psy12281        330 NHNWIN  335 (456)
Q Consensus       330 n~~~~~  335 (456)
                      +.+|..
T Consensus        95 ~leFyc  100 (127)
T 3bb6_A           95 NIDFFV  100 (127)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            666643

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=92.48  E-value=0.23  Score=39.72  Aligned_cols=55  Identities=13%  Similarity=0.082  Sum_probs=40.1

Q ss_pred             CCCccccc--ccc-cCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCC
Q psy12281        238 KETWTPLH--ADV-FHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPS  314 (456)
Q Consensus       238 ~gs~T~lH--~D~-~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPs  314 (456)
                      +|..++.|  ... ...+  ..++.|+=++.+   +                            .-+..+.|||+++||+
T Consensus        30 pg~~~~~h~~~H~~~~e~--~~vl~G~~~~~~---~----------------------------~~~~~l~~Gd~~~i~~   76 (113)
T 2gu9_A           30 PGDREGGPDNRHRGADQW--LFVVDGAGEAIV---D----------------------------GHTQALQAGSLIAIER   76 (113)
T ss_dssp             TTCEEECCCSSSCCCEEE--EEEEECCEEEEE---T----------------------------TEEEEECTTEEEEECT
T ss_pred             CCCccCCcccccCCCcEE--EEEEeCEEEEEE---C----------------------------CEEEEeCCCCEEEECC
Confidence            34456777  544 3333  778888877665   0                            1247899999999999


Q ss_pred             CCeEEEEeCCC
Q psy12281        315 GWHHQVTNLEH  325 (456)
Q Consensus       315 gW~H~V~nl~~  325 (456)
                      +-.|...|.++
T Consensus        77 ~~~H~~~~~~~   87 (113)
T 2gu9_A           77 GQAHEIRNTGD   87 (113)
T ss_dssp             TCCEEEECCSS
T ss_pred             CCcEEeEcCCC
Confidence            99999999875

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=92.30  E-value=0.34  Score=48.53  Aligned_cols=65  Identities=23%  Similarity=0.374  Sum_probs=49.2

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +.+.+.+ ..++|+....  -|..++.|+=++.+...+.                          +.....+++||+++|
T Consensus        84 ~~l~pg~-~~~~H~H~~~--E~~~Vl~G~~~~~~~~~~g--------------------------~~~~~~l~~GD~~~i  134 (385)
T 1j58_A           84 MRLKPGA-IRELHWHKEA--EWAYMIYGSARVTIVDEKG--------------------------RSFIDDVGEGDLWYF  134 (385)
T ss_dssp             EEECTTC-EEEEEEESSC--EEEEEEEEEEEEEEECTTS--------------------------CEEEEEEETTEEEEE
T ss_pred             EEECCCC-CCCCccCChh--eEEEEEeeeEEEEEEeCCC--------------------------cEEEEEeCCCCEEEE
Confidence            4555544 5888988743  5689999998888864421                          233458999999999


Q ss_pred             CCCCeEEEEeCCCc
Q psy12281        313 PSGWHHQVTNLEHT  326 (456)
Q Consensus       313 PsgW~H~V~nl~~s  326 (456)
                      |+|.+|...|.++.
T Consensus       135 p~g~~H~~~n~~~~  148 (385)
T 1j58_A          135 PSGLPHSIQALEEG  148 (385)
T ss_dssp             CTTCCEEEEEEEEE
T ss_pred             CCCCeEEEEECCCC
Confidence            99999999998763

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=92.24  E-value=0.5  Score=43.50  Aligned_cols=76  Identities=18%  Similarity=0.143  Sum_probs=52.5

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCC-CcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGN-EKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~-~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      ++.=++|..||.|-...  ..+..++.|.=+=.+|.... ...+                     ...-+.++.||++.+
T Consensus        83 ~l~w~PGq~spiHdH~~--~~~~~VL~G~l~e~~y~~~~~g~~l---------------------~~~~~~~l~~G~v~~  139 (208)
T 2gm6_A           83 SFVWGPGQRTPIHDHTV--WGLIGMLRGAEYSQPFVLDGSGRPV---------------------LHGEPTRLEPGHVEA  139 (208)
T ss_dssp             EEEECTTCBCCSBCCSS--CEEEEEEESCEEEEEEEECTTSCEE---------------------ECSCCEEECTTCEEE
T ss_pred             EEEeCCCcccCcccCCc--ceEEEEecccEEEEEeecCCCCccc---------------------cccceEEeCCCCEEE
Confidence            33336688899997653  56688999987777763221 1111                     011257899999999


Q ss_pred             eCC--CCeEEEEeC-CC--cEEEEe
Q psy12281        312 VPS--GWHHQVTNL-EH--TISINH  331 (456)
Q Consensus       312 IPs--gW~H~V~nl-~~--sIsvn~  331 (456)
                      ++.  |..|+|.|. ++  +|||..
T Consensus       140 ~~~~~g~iH~V~N~~~~~~avsLHv  164 (208)
T 2gm6_A          140 VSPTVGDIHRVHNAYDDRVSISIHV  164 (208)
T ss_dssp             EBTTTBCCEEEEESCSSSCEEEEEE
T ss_pred             ECCCCCCeEEeccCCCCCcEEEEEE
Confidence            999  999999998 34  666655

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=92.22  E-value=0.62  Score=41.74  Aligned_cols=82  Identities=12%  Similarity=0.005  Sum_probs=49.9

Q ss_pred             eeeCCCCCccccccccc------CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC
Q psy12281        233 VYMGPKETWTPLHADVF------HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA  306 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~------~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p  306 (456)
                      +++- +|..+|+|+.+.      ..=.|. ++.|.=+.++  ++....  .....+| |-.     ..--...-+++|+|
T Consensus        58 l~l~-pGQ~~P~H~H~~~~~~~gK~E~~i-vr~G~v~l~~--~g~~~~--~~~v~v~-dg~-----~~~~~a~~~i~L~p  125 (175)
T 2y0o_A           58 LVLF-PGQTCPEHRHPPVDGQEGKQETFR-CRYGKVYLYV--EGEKTP--LPKVLPP-QED-----REHYTVWHEIELEP  125 (175)
T ss_dssp             EEEC-TTCEEEEEECCCCTTSCCCCEEEE-EEEEEEEEEE--SSSCCS--SCSCCCC-GGG-----GGGCCCCEEEEECT
T ss_pred             EEEC-CCCcCCceECCCCCCCCCCceeEE-EecCEEEEEE--CCcccc--Ccceecc-CCc-----eeeecCCcEEEECC
Confidence            4444 477899999998      433445 7778744444  333221  1001111 100     00014467899999


Q ss_pred             CCEEEeCCCCeEEEEeCCCc
Q psy12281        307 GDSIFVPSGWHHQVTNLEHT  326 (456)
Q Consensus       307 GD~LfIPsgW~H~V~nl~~s  326 (456)
                      ||.+.||+|-||...+.++.
T Consensus       126 GesvtIppg~~H~f~ageeg  145 (175)
T 2y0o_A          126 GGQYTIPPNTKHWFQAGEEG  145 (175)
T ss_dssp             TCEEEECTTCCEEEEEEEEE
T ss_pred             CCEEEECCCCcEEEEeCCCC
Confidence            99999999999999995443

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=92.22  E-value=0.51  Score=38.93  Aligned_cols=62  Identities=21%  Similarity=0.127  Sum_probs=44.9

Q ss_pred             CCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeE
Q psy12281        239 ETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHH  318 (456)
Q Consensus       239 gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H  318 (456)
                      |..++.|.....-+  ..++.|+-++.+                               ..-+..++|||+++||+|=.|
T Consensus        44 g~~~~~H~H~~~Ei--~~v~~G~~~~~i-------------------------------~~~~~~l~~Gd~~~i~~~~~H   90 (128)
T 4i4a_A           44 ETKSFRHSHNEYEL--FIVIQGNAIIRI-------------------------------NDEDFPVTKGDLIIIPLDSEH   90 (128)
T ss_dssp             TEECCCBCCSSEEE--EEEEESEEEEEE-------------------------------TTEEEEEETTCEEEECTTCCE
T ss_pred             CCccCCEecCCeEE--EEEEeCEEEEEE-------------------------------CCEEEEECCCcEEEECCCCcE
Confidence            44578888755444  788888877665                               012578999999999999999


Q ss_pred             EEEeCCC--cEEEEeec
Q psy12281        319 QVTNLEH--TISINHNW  333 (456)
Q Consensus       319 ~V~nl~~--sIsvn~~~  333 (456)
                      .+.|.++  ...+...|
T Consensus        91 ~~~~~~~~~~~~~~i~f  107 (128)
T 4i4a_A           91 HVINNNQEDFHFYTIWW  107 (128)
T ss_dssp             EEEECSSSCEEEEEEEE
T ss_pred             EeEeCCCCCEEEEEEEE
Confidence            9999765  34445444

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=92.21  E-value=0.56  Score=40.19  Aligned_cols=61  Identities=16%  Similarity=0.054  Sum_probs=43.7

Q ss_pred             CCCcccccccccC-ccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        238 KETWTPLHADVFH-SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       238 ~gs~T~lH~D~~~-~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      +|..++.|..... -+  ..++.|+=++.+-.-.  .                       ...++..+.|||+++||+|-
T Consensus        52 pg~~~~~H~H~~~~E~--~~Vl~G~~~~~i~~~~--~-----------------------~~~~~~~l~~Gd~i~ip~g~  104 (148)
T 2oa2_A           52 VGEDIGLEIHPHLDQF--LRVEEGRGLVQMGHRQ--D-----------------------NLHFQEEVFDDYAILIPAGT  104 (148)
T ss_dssp             TTCBCCCBCCTTCEEE--EEEEESEEEEEEESBT--T-----------------------BCCEEEEEETTCEEEECTTC
T ss_pred             CCCccCceECCCCcEE--EEEEeCEEEEEECCcc--c-----------------------cceeeEEECCCCEEEECCCC
Confidence            3555778876532 34  7789998877762100  0                       11356899999999999999


Q ss_pred             eEEEEeCCC
Q psy12281        317 HHQVTNLEH  325 (456)
Q Consensus       317 ~H~V~nl~~  325 (456)
                      .|...|.++
T Consensus       105 ~H~~~n~~~  113 (148)
T 2oa2_A          105 WHNVRNTGN  113 (148)
T ss_dssp             EEEEEECSS
T ss_pred             cEEEEECCC
Confidence            999999876

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=92.03  E-value=0.22  Score=44.19  Aligned_cols=55  Identities=13%  Similarity=0.075  Sum_probs=41.1

Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCe
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWH  317 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~  317 (456)
                      +|..+++|.....-+  ..++.|+=...+                               ..-+..++|||+++||+|=+
T Consensus        62 pG~~~~~H~H~~~E~--~~Vl~G~~~~~v-------------------------------~g~~~~l~~GD~i~ip~g~~  108 (166)
T 3jzv_A           62 PGGHSTLERHQHAHG--VMILKGRGHAMV-------------------------------GRAVSAVAPYDLVTIPGWSW  108 (166)
T ss_dssp             EEEECCCBBCSSCEE--EEEEEECEEEEE-------------------------------TTEEEEECTTCEEEECTTCC
T ss_pred             CCCccCceeCCCcEE--EEEEeCEEEEEE-------------------------------CCEEEEeCCCCEEEECCCCc
Confidence            345577887766544  667888766544                               01257899999999999999


Q ss_pred             EEEEeCCC
Q psy12281        318 HQVTNLEH  325 (456)
Q Consensus       318 H~V~nl~~  325 (456)
                      |+..|.++
T Consensus       109 H~~~n~~~  116 (166)
T 3jzv_A          109 HQFRAPAD  116 (166)
T ss_dssp             EEEECCTT
T ss_pred             EEeEeCCC
Confidence            99999876

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=91.99  E-value=0.15  Score=43.04  Aligned_cols=57  Identities=21%  Similarity=0.201  Sum_probs=42.2

Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCe
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWH  317 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~  317 (456)
                      +|..+++|.......  ..++.|+-+..+.-                             ..-+.++.|||+++||+|-.
T Consensus        48 pg~~~~~H~H~~~e~--~~vl~G~~~~~~~~-----------------------------~~~~~~l~~Gd~~~ip~~~~   96 (145)
T 3ht1_A           48 PNGSTPPHFHEWEHE--IYVLEGSMGLVLPD-----------------------------QGRTEEVGPGEAIFIPRGEP   96 (145)
T ss_dssp             EEEECCCEECSSCEE--EEEEEECEEEEEGG-----------------------------GTEEEEECTTCEEEECTTCC
T ss_pred             CCCcCCCccCCCceE--EEEEEeEEEEEEeE-----------------------------CCEEEEECCCCEEEECCCCe
Confidence            455578888877666  56788876554200                             01257899999999999999


Q ss_pred             EEEEeCCC
Q psy12281        318 HQVTNLEH  325 (456)
Q Consensus       318 H~V~nl~~  325 (456)
                      |...|.++
T Consensus        97 H~~~~~~~  104 (145)
T 3ht1_A           97 HGFVTGPG  104 (145)
T ss_dssp             BEEECCTT
T ss_pred             EEeEcCCC
Confidence            99999876

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=91.93  E-value=0.23  Score=51.08  Aligned_cols=79  Identities=11%  Similarity=0.048  Sum_probs=55.1

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-+.+. +..++|+.+.. .-|..++.|+=+..++.|.-... ....|.           . .+.+.+..++++||+++
T Consensus       270 ~v~l~pG-~m~~pH~hp~A-~Ei~~V~~G~~~v~vv~~~g~~~-~~~~~~-----------~-~~~r~~~~~l~~Gdv~v  334 (434)
T 2ea7_A          270 SVDMKEG-ALLLPHYSSKA-IVIMVINEGEAKIELVGLSDQQQ-QKQQEE-----------S-LEVQRYRAELSEDDVFV  334 (434)
T ss_dssp             EEEECTT-EEEEEEEESSC-EEEEEEEESCEEEEEEEEEECCC-CTTSCC-----------C-EEEEEEEEEECTTCEEE
T ss_pred             EEEEcCC-eeeccEEcCCC-CEEEEEEeeEEEEEEEecCcccc-cccccc-----------C-cceEEEEEEecCCcEEE
Confidence            4566664 45899998865 57899999999999997742110 000000           0 00235667999999999


Q ss_pred             eCCCCeEEEEeCCC
Q psy12281        312 VPSGWHHQVTNLEH  325 (456)
Q Consensus       312 IPsgW~H~V~nl~~  325 (456)
                      ||.|+.|...|.++
T Consensus       335 vP~g~~h~~~n~~~  348 (434)
T 2ea7_A          335 IPAAYPVAINATSN  348 (434)
T ss_dssp             ECTTCCEEEEESSS
T ss_pred             ECCCCeEEEEcCCC
Confidence            99999999999965

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=91.85  E-value=0.21  Score=50.57  Aligned_cols=26  Identities=27%  Similarity=0.242  Sum_probs=23.9

Q ss_pred             EEEEEcCCCEEEeCCCCeEEEEe-CCC
Q psy12281        300 IIVEQEAGDSIFVPSGWHHQVTN-LEH  325 (456)
Q Consensus       300 ~~~~l~pGD~LfIPsgW~H~V~n-l~~  325 (456)
                      -++.+++||++++|+|.||...| .++
T Consensus       162 ~~~~~~~GD~i~~P~g~~H~~~N~~gd  188 (394)
T 3bu7_A          162 HKVELGANDFVLTPNGTWHEHGILESG  188 (394)
T ss_dssp             EEEEECTTCEEEECTTCCEEEEECTTC
T ss_pred             EEEEEcCCCEEEECcCCCEEEEcCCCC
Confidence            36899999999999999999999 776

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=91.48  E-value=1  Score=40.27  Aligned_cols=72  Identities=7%  Similarity=-0.095  Sum_probs=49.7

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEc---CCCE
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQE---AGDS  309 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~---pGD~  309 (456)
                      +....+|+.-.+|+..... -...++.|+=..+++.-...               +|.+     .+...++|.   ++-.
T Consensus        57 ~s~s~~GvlRG~H~h~~q~-klv~~v~G~v~dv~vD~R~~---------------SpTf-----g~~~~v~Ls~~~n~~~  115 (174)
T 3ejk_A           57 FSEVLPRRVKAWKRHSLMT-QLFAVPVGCIHVVLYDGREK---------------SPTS-----GRLAQVTLGRPDNYRL  115 (174)
T ss_dssp             EEEECBTCEEEEEEESSCC-EEEEEEESEEEEEEECCCTT---------------CTTT-----TCEEEEEEETTTBCEE
T ss_pred             EEECCCCCEECcEecCCCc-eEEEEEeeEEEEEEEeCCCC---------------CCCC-----CeEEEEEECCccCceE
Confidence            3445678888899876422 23677788877777543221               1111     345677776   7789


Q ss_pred             EEeCCCCeEEEEeCCC
Q psy12281        310 IFVPSGWHHQVTNLEH  325 (456)
Q Consensus       310 LfIPsgW~H~V~nl~~  325 (456)
                      ||||+|+||...++++
T Consensus       116 L~IP~G~aHgf~~lsd  131 (174)
T 3ejk_A          116 LRIPPQVWYGFAATGD  131 (174)
T ss_dssp             EEECTTCEEEEEECTT
T ss_pred             EEeCCCcEEEEEEccC
Confidence            9999999999999988

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=91.38  E-value=0.52  Score=45.89  Aligned_cols=73  Identities=23%  Similarity=0.246  Sum_probs=49.8

Q ss_pred             CCCCCcccccccc-cCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCC
Q psy12281        236 GPKETWTPLHADV-FHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPS  314 (456)
Q Consensus       236 G~~gs~T~lH~D~-~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPs  314 (456)
                      .++|...++|... ..  -|..++.|+=++++   +         |                   -+..+++||++|+|+
T Consensus        53 ~~pg~~~~~h~H~~~~--e~~~Vl~G~~~~~~---~---------~-------------------~~~~l~~Gd~~~~p~   99 (337)
T 1y3t_A           53 GGKGDAFPLHVHKDTH--EGILVLDGKLELTL---D---------G-------------------ERYLLISGDYANIPA   99 (337)
T ss_dssp             ECTTCEEEEEECTTCC--EEEEEEESCEEEEE---T---------T-------------------EEEEECTTCEEEECT
T ss_pred             eCCCCCCCceeCCCce--EEEEEEECEEEEEE---C---------C-------------------EEEEECCCCEEEECC
Confidence            3445667888876 33  34888999877765   1         1                   147899999999999


Q ss_pred             CCeEEEEeCCCcEEEEeecCCCCCHHHH
Q psy12281        315 GWHHQVTNLEHTISINHNWINGTNIDHV  342 (456)
Q Consensus       315 gW~H~V~nl~~sIsvn~~~~~~~nl~~~  342 (456)
                      |-+|...|.++.. .-.+......+...
T Consensus       100 ~~~H~~~n~~~~~-~~~~~~~p~~~~~~  126 (337)
T 1y3t_A          100 GTPHSYRMQSHRT-RLVSYTMKGNVAHL  126 (337)
T ss_dssp             TCCEEEEECSTTE-EEEEEEETTSSTHH
T ss_pred             CCcEEEEECCCCe-EEEEEECCCCHHHH
Confidence            9999999998742 22233344444443

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=91.35  E-value=0.59  Score=38.88  Aligned_cols=58  Identities=12%  Similarity=0.055  Sum_probs=42.5

Q ss_pred             eeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeC
Q psy12281        234 YMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVP  313 (456)
Q Consensus       234 ~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIP  313 (456)
                      +.-.+|...+.|. ..+-  |..++.|+=+..+   +                            .-+.+++|||+++||
T Consensus        45 ~~~~pG~~~~~H~-~~~E--~~~Vl~G~~~~~~---~----------------------------g~~~~l~~GD~v~ip   90 (119)
T 3lwc_A           45 GRYAPGQSLTETM-AVDD--VMIVLEGRLSVST---D----------------------------GETVTAGPGEIVYMP   90 (119)
T ss_dssp             EEECTTCEEEEEC-SSEE--EEEEEEEEEEEEE---T----------------------------TEEEEECTTCEEEEC
T ss_pred             EEECCCCCcCccC-CCCE--EEEEEeCEEEEEE---C----------------------------CEEEEECCCCEEEEC
Confidence            3334566678887 3333  3789999977766   1                            115789999999999


Q ss_pred             CCCeEEEEeCCC
Q psy12281        314 SGWHHQVTNLEH  325 (456)
Q Consensus       314 sgW~H~V~nl~~  325 (456)
                      +|-.|...|.++
T Consensus        91 ~g~~H~~~~~~~  102 (119)
T 3lwc_A           91 KGETVTIRSHEE  102 (119)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCCEEEEEcCCC
Confidence            999999998743

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=91.29  E-value=0.58  Score=43.32  Aligned_cols=65  Identities=11%  Similarity=0.033  Sum_probs=50.8

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      .+|+..+.|.-+..-+  ..++.|+=++++            .|                   -+.+++|||.+|+|+|-
T Consensus        45 ~~G~~~~~h~h~~~~~--~~Vl~G~~~~~i------------~~-------------------~~~~l~~Gd~~~~p~~~   91 (227)
T 3rns_A           45 AKDEEITAEAMLGNRY--YYCFNGNGEIFI------------EN-------------------NKKTISNGDFLEITANH   91 (227)
T ss_dssp             CTTCEEEECSCSSCEE--EEEEESEEEEEE------------SS-------------------CEEEEETTEEEEECSSC
T ss_pred             CCCCccCccccCCCEE--EEEEeCEEEEEE------------CC-------------------EEEEECCCCEEEECCCC
Confidence            4567788898777665  788999987776            11                   14789999999999999


Q ss_pred             eEEEEeCCCcEEEEeecC
Q psy12281        317 HHQVTNLEHTISINHNWI  334 (456)
Q Consensus       317 ~H~V~nl~~sIsvn~~~~  334 (456)
                      .|.+.+.+++.-+-....
T Consensus        92 ~H~~~a~~~~~~l~i~~~  109 (227)
T 3rns_A           92 NYSIEARDNLKLIEIGEK  109 (227)
T ss_dssp             CEEEEESSSEEEEEEEEC
T ss_pred             CEEEEECCCcEEEEEEee
Confidence            999999999766655443

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=91.28  E-value=0.71  Score=40.03  Aligned_cols=60  Identities=15%  Similarity=0.115  Sum_probs=43.3

Q ss_pred             eeeCCCCCccccccc-ccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        233 VYMGPKETWTPLHAD-VFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       233 l~iG~~gs~T~lH~D-~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      +-+.|.+..+++|.. ...-+  ..++.|+=.+.+            .                   .-+..++|||+++
T Consensus        51 ~~l~pg~~~~~~H~H~~~~E~--~~Vl~G~~~~~~------------~-------------------~~~~~l~~Gd~i~   97 (162)
T 3l2h_A           51 IQIEPGKESTEYHLHHYEEEA--VYVLSGKGTLTM------------E-------------------NDQYPIAPGDFVG   97 (162)
T ss_dssp             EEECTTCBSSSSBEESSCCEE--EEEEESCEEEEE------------T-------------------TEEEEECTTCEEE
T ss_pred             EEECCCCcCCCCccCCCCCEE--EEEEEEEEEEEE------------C-------------------CEEEEeCCCCEEE
Confidence            344554434788887 34444  778888866654            0                   1257899999999


Q ss_pred             eCCC-CeEEEEeCCC
Q psy12281        312 VPSG-WHHQVTNLEH  325 (456)
Q Consensus       312 IPsg-W~H~V~nl~~  325 (456)
                      ||++ -.|...|.++
T Consensus        98 i~~~~~~H~~~n~~~  112 (162)
T 3l2h_A           98 FPCHAAAHSISNDGT  112 (162)
T ss_dssp             ECTTSCCEEEECCSS
T ss_pred             ECCCCceEEeEeCCC
Confidence            9997 9999999876

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=91.24  E-value=0.27  Score=50.64  Aligned_cols=63  Identities=17%  Similarity=0.151  Sum_probs=48.7

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-+.|.+ ..++|  ....--|..++.|+=+..++.|+.                           ..+..+++||+++
T Consensus        90 ~~~l~Pgg-~~~pH--h~~a~E~~yVl~G~g~v~~v~~~~---------------------------~~~~~l~~GDv~~  139 (445)
T 2cav_A           90 EYCSKPNT-LLLPH--HSDSDLLVLVLEGQAILVLVNPDG---------------------------RDTYKLDQGDAIK  139 (445)
T ss_dssp             EEEECSSE-EEEEE--EESSEEEEEEEESEEEEEEEETTE---------------------------EEEEEEETTEEEE
T ss_pred             EEEECCCc-CccCc--CCCCceEEEEEeCEEEEEEEeCCC---------------------------CEEEEecCCCEEE
Confidence            34566654 47888  234556799999999998876542                           1357899999999


Q ss_pred             eCCCCeEEEEeCC
Q psy12281        312 VPSGWHHQVTNLE  324 (456)
Q Consensus       312 IPsgW~H~V~nl~  324 (456)
                      +|+|-.|...|.+
T Consensus       140 ~P~G~~H~~~N~g  152 (445)
T 2cav_A          140 IQAGTPFYLINPD  152 (445)
T ss_dssp             ECTTCCEEEEECC
T ss_pred             ECCCCcEEEEECC
Confidence            9999999999997

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=90.95  E-value=0.19  Score=42.35  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=23.5

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCc
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHT  326 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~s  326 (456)
                      .++++|||++++|+|.-|...|.++.
T Consensus        88 ~~~l~~GD~~~ip~g~~h~~~~~~~~  113 (123)
T 3bcw_A           88 VHAVKAGDAFIMPEGYTGRWEVDRHV  113 (123)
T ss_dssp             EEEEETTCEEEECTTCCCEEEEEEEE
T ss_pred             EEEECCCCEEEECCCCeEEEEECCce
Confidence            47899999999999999999998763

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=90.64  E-value=0.92  Score=37.33  Aligned_cols=59  Identities=14%  Similarity=0.104  Sum_probs=41.3

Q ss_pred             eeCCCCCccc-ccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        234 YMGPKETWTP-LHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       234 ~iG~~gs~T~-lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      .+-+ |...+ .|....... ...++.|+=...+            .                   .-+..++|||+++|
T Consensus        32 ~~~p-g~~~~~~H~H~~~e~-~~~vl~G~~~~~i------------~-------------------~~~~~l~~Gd~i~i   78 (125)
T 3cew_A           32 HLPA-GAGVPFVHSHKQNEE-IYGILSGKGFITI------------D-------------------GEKIELQAGDWLRI   78 (125)
T ss_dssp             EECT-TCBCSSEEEESSEEE-EEEEEEEEEEEEE------------T-------------------TEEEEEETTEEEEE
T ss_pred             EECC-CCCCCCCccCCCceE-EEEEEeCEEEEEE------------C-------------------CEEEEeCCCCEEEE
Confidence            3444 44466 788654433 1338888877655            0                   12578999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |++-.|+..|.++
T Consensus        79 ~~~~~H~~~~~~~   91 (125)
T 3cew_A           79 APDGKRQISAASD   91 (125)
T ss_dssp             CTTCCEEEEEBTT
T ss_pred             CCCCcEEEEcCCC
Confidence            9999999999865

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=90.53  E-value=0.61  Score=45.36  Aligned_cols=61  Identities=18%  Similarity=0.120  Sum_probs=44.0

Q ss_pred             eeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeC
Q psy12281        234 YMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVP  313 (456)
Q Consensus       234 ~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIP  313 (456)
                      .+.++|...++|.... ..-+..++.|+=+..+   +                            .-+..+++||+++||
T Consensus       223 ~~~p~g~~~~~h~H~~-~~e~~~vl~G~~~~~i---~----------------------------~~~~~l~~GD~~~ip  270 (337)
T 1y3t_A          223 SEGPKGDRIVDHYHEY-HTETFYCLEGQMTMWT---D----------------------------GQEIQLNPGDFLHVP  270 (337)
T ss_dssp             EEECSCCCCCCEECSS-CEEEEEEEESCEEEEE---T----------------------------TEEEEECTTCEEEEC
T ss_pred             EEcCCCCCCCCcCCCC-CcEEEEEEeCEEEEEE---C----------------------------CEEEEECCCCEEEEC
Confidence            3456666677787652 1234778888866655   0                            125789999999999


Q ss_pred             CCCeEEEEeCCCc
Q psy12281        314 SGWHHQVTNLEHT  326 (456)
Q Consensus       314 sgW~H~V~nl~~s  326 (456)
                      ++-.|...|.++.
T Consensus       271 ~~~~H~~~n~~~~  283 (337)
T 1y3t_A          271 ANTVHSYRLDSHY  283 (337)
T ss_dssp             TTCCEEEEECSSS
T ss_pred             CCCeEEEEECCCC
Confidence            9999999999873

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=90.48  E-value=0.84  Score=37.27  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=22.5

Q ss_pred             EEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        302 VEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       302 ~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      ..++|||.+|||++=.|.+.|.++
T Consensus        75 ~~l~~Gd~i~ipa~~~H~~~n~~~   98 (112)
T 2opk_A           75 RVMRPGDWLHVPAHCRHRVAWTDG   98 (112)
T ss_dssp             EEECTTEEEEECTTCCEEEEEECS
T ss_pred             EEECCCCEEEECCCCcEEEEeCCC
Confidence            679999999999999999999875

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=90.43  E-value=0.4  Score=47.94  Aligned_cols=62  Identities=23%  Similarity=0.317  Sum_probs=45.1

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|..++.|..... .-|..++.|+=+..+..++                          ....+..+++||+++||++.
T Consensus       265 ~pG~~~~~h~H~~~-~E~~~Vl~G~~~~~i~~~~--------------------------g~~~~~~l~~GD~~~ip~~~  317 (385)
T 1j58_A          265 EPGAMRELHWHPNT-HEWQYYISGKARMTVFASD--------------------------GHARTFNYQAGDVGYVPFAM  317 (385)
T ss_dssp             CTTCEEEEEECSSS-CEEEEEEESEEEEEEEEET--------------------------TEEEEEEEESSCEEEECTTC
T ss_pred             CCCcccCceeCCCC-CEEEEEEeCeEEEEEEcCC--------------------------CcEEEEEEcCCCEEEECCCC
Confidence            34555777877651 2348889998887775221                          11246789999999999999


Q ss_pred             eEEEEeCCC
Q psy12281        317 HHQVTNLEH  325 (456)
Q Consensus       317 ~H~V~nl~~  325 (456)
                      +|...|.++
T Consensus       318 ~H~~~n~~~  326 (385)
T 1j58_A          318 GHYVENIGD  326 (385)
T ss_dssp             BEEEEECSS
T ss_pred             eEEEEECCC
Confidence            999999876

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=90.33  E-value=0.63  Score=43.09  Aligned_cols=67  Identities=22%  Similarity=0.258  Sum_probs=50.5

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +.|+| |+..|.|..+..-+  +.++.|+-.|.+=   .        |                   -..++.|||++|+
T Consensus       137 v~l~P-G~~yP~HsHp~EEi--y~VLsG~~e~~v~---~--------g-------------------~~~~l~pGd~v~i  183 (217)
T 4b29_A          137 GYWGP-GLDYGWHEHLPEEL--YSVVSGRALFHLR---N--------A-------------------PDLMLEPGQTRFH  183 (217)
T ss_dssp             EEECS-SCEEEEEECSSEEE--EEEEEECEEEEET---T--------S-------------------CCEEECTTCEEEE
T ss_pred             EEECC-CCcCCCCCCCCceE--EEEEeCCEEEEEC---C--------C-------------------CEEecCCCCEEEc
Confidence            44444 56699999988877  8899998888771   0        1                   1378999999999


Q ss_pred             CCCCeEEEEeCCC-cEEEEee
Q psy12281        313 PSGWHHQVTNLEH-TISINHN  332 (456)
Q Consensus       313 PsgW~H~V~nl~~-sIsvn~~  332 (456)
                      |+|=-|..++.++ .+++=.|
T Consensus       184 psgv~Ha~rt~dePllalwvW  204 (217)
T 4b29_A          184 PANAPHAMTTLTDPILTLVLW  204 (217)
T ss_dssp             CTTCCEEEECCSSCEEEEEEE
T ss_pred             CCCCceeEEECCccEEEEEEE
Confidence            9999999998776 4444443

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=90.26  E-value=0.88  Score=39.85  Aligned_cols=60  Identities=18%  Similarity=0.121  Sum_probs=43.4

Q ss_pred             eeeCCCCCccccccccc-CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        233 VYMGPKETWTPLHADVF-HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~-~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      +-+.+.+...+.|.... .-+  ..++.|+=...+                               ..-+.++++||+++
T Consensus        48 ~~l~pG~~~~~~H~H~~~eE~--~~Vl~G~~~~~~-------------------------------~~~~~~l~~GD~i~   94 (163)
T 3i7d_A           48 VRLEPGAKSSLRHYHMEQDEF--VMVTEGALVLVD-------------------------------DQGEHPMVPGDCAA   94 (163)
T ss_dssp             EEECTTCBSSSSEEESSCCEE--EEEEESCEEEEE-------------------------------TTEEEEECTTCEEE
T ss_pred             EEECCCCcCCCCccCCCCcEE--EEEEECEEEEEE-------------------------------CCEEEEeCCCCEEE
Confidence            34445443447888765 355  778888766554                               01258999999999


Q ss_pred             eCCC--CeEEEEeCCC
Q psy12281        312 VPSG--WHHQVTNLEH  325 (456)
Q Consensus       312 IPsg--W~H~V~nl~~  325 (456)
                      ||++  -.|++.|.++
T Consensus        95 ip~~~~~~H~~~n~~~  110 (163)
T 3i7d_A           95 FPAGDPNGHQFVNRTD  110 (163)
T ss_dssp             ECTTCCCCBEEECCSS
T ss_pred             ECCCCCcceEEEECCC
Confidence            9999  9999999876

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=90.01  E-value=0.78  Score=38.52  Aligned_cols=54  Identities=22%  Similarity=0.155  Sum_probs=39.7

Q ss_pred             CCcccccccc-cCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCe
Q psy12281        239 ETWTPLHADV-FHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWH  317 (456)
Q Consensus       239 gs~T~lH~D~-~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~  317 (456)
                      |..++.|... ..-+  ..++.|+=...+                               ..-+..++|||++++|++-.
T Consensus        67 g~~~~~H~H~~~~E~--~~Vl~G~~~~~i-------------------------------~~~~~~l~~Gd~i~i~~~~~  113 (133)
T 1o4t_A           67 GSSVGLHKHEGEFEI--YYILLGEGVFHD-------------------------------NGKDVPIKAGDVCFTDSGES  113 (133)
T ss_dssp             TCEEEEEECCSEEEE--EEEEESEEEEEE-------------------------------TTEEEEEETTEEEEECTTCE
T ss_pred             CCccCceECCCccEE--EEEEeCEEEEEE-------------------------------CCEEEEeCCCcEEEECCCCc
Confidence            4446778754 2344  677888766654                               01257899999999999999


Q ss_pred             EEEEeCCC
Q psy12281        318 HQVTNLEH  325 (456)
Q Consensus       318 H~V~nl~~  325 (456)
                      |...|.++
T Consensus       114 H~~~n~~~  121 (133)
T 1o4t_A          114 HSIENTGN  121 (133)
T ss_dssp             EEEECCSS
T ss_pred             EEeEECCC
Confidence            99999876

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=89.98  E-value=1.4  Score=39.23  Aligned_cols=26  Identities=23%  Similarity=0.166  Sum_probs=23.4

Q ss_pred             EEEEEcCCCEEEeCCCCeEEEEeC-CC
Q psy12281        300 IIVEQEAGDSIFVPSGWHHQVTNL-EH  325 (456)
Q Consensus       300 ~~~~l~pGD~LfIPsgW~H~V~nl-~~  325 (456)
                      -+.+++|||.+|+|++-.|...|. ++
T Consensus       162 ~~~~l~~GD~~~~~~~~~H~~~n~~~~  188 (198)
T 2bnm_A          162 KEALLPTGASMFVEEHVPHAFTAAKGT  188 (198)
T ss_dssp             EEEEECTTCEEEECTTCCEEEEESTTS
T ss_pred             ccEEECCCCEEEeCCCCceEEEecCCC
Confidence            357899999999999999999998 54

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=89.83  E-value=0.32  Score=48.47  Aligned_cols=25  Identities=24%  Similarity=0.239  Sum_probs=23.4

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      +..+++||+++||+|.+|...|.++
T Consensus       140 ~~~l~~GD~~~iP~g~~H~~~n~~~  164 (354)
T 2d40_A          140 RTPMNEGDFILTPQWRWHDHGNPGD  164 (354)
T ss_dssp             EEECCTTCEEEECTTSCEEEECCSS
T ss_pred             EEEEcCCCEEEECCCCcEEeEeCCC
Confidence            5789999999999999999999876

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=89.74  E-value=0.96  Score=43.36  Aligned_cols=75  Identities=13%  Similarity=0.201  Sum_probs=59.7

Q ss_pred             CccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCC
Q psy12281        228 DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAG  307 (456)
Q Consensus       228 ~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pG  307 (456)
                      .+++-+.+|+..+.+.+|+|..+-+  +.|+.|.=+-.+...                           .+...+.+++|
T Consensus        30 ~~~~V~~vgGpN~R~d~H~~~~dE~--FyqlkG~m~l~~~d~---------------------------g~~~~V~i~eG   80 (286)
T 2qnk_A           30 EQLKVMFIGGPNTRKDYHIEEGEEV--FYQLEGDMVLRVLEQ---------------------------GKHRDVVIRQG   80 (286)
T ss_dssp             SSEEEEEECSCBCCCCEEECSSCEE--EEEEESCEEEEEEET---------------------------TEEEEEEECTT
T ss_pred             ccEEEEEEeCCCcCccCcCCCCCeE--EEEEeCeEEEEEEeC---------------------------CceeeEEECCC
Confidence            3567788999999999998877765  999999866665421                           23457999999


Q ss_pred             CEEEeCCCCeEEEEeCCCcEEEEe
Q psy12281        308 DSIFVPSGWHHQVTNLEHTISINH  331 (456)
Q Consensus       308 D~LfIPsgW~H~V~nl~~sIsvn~  331 (456)
                      |+..+|+|=-|.....++|+.+-.
T Consensus        81 emfllP~gv~HsP~r~~et~gLvi  104 (286)
T 2qnk_A           81 EIFLLPARVPHSPQRFANTVGLVV  104 (286)
T ss_dssp             EEEEECTTCCEEEEECTTCEEEEE
T ss_pred             eEEEeCCCCCcCCcccCCeEEEEE
Confidence            999999999999998888766643

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=89.60  E-value=0.32  Score=39.34  Aligned_cols=59  Identities=15%  Similarity=0.098  Sum_probs=42.0

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +|-..+|. .++|.+. .-+  ..++.|+=++.+   +.                           .-+.+++|||+++|
T Consensus        35 ~~~~~pg~-~~~hH~~-~E~--~~Vl~G~~~~~i---~~---------------------------g~~~~l~~GD~i~i   80 (101)
T 1o5u_A           35 IWEKEVSE-FDWYYDT-NET--CYILEGKVEVTT---ED---------------------------GKKYVIEKGDLVTF   80 (101)
T ss_dssp             EEEECSEE-EEEECSS-CEE--EEEEEEEEEEEE---TT---------------------------CCEEEEETTCEEEE
T ss_pred             EEEeCCCc-ccccCCc-eEE--EEEEeCEEEEEE---CC---------------------------CCEEEECCCCEEEE
Confidence            55555665 3467443 333  788999877665   10                           11478999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |+|..|...|.++
T Consensus        81 p~g~~H~~~n~~~   93 (101)
T 1o5u_A           81 PKGLRCRWKVLEP   93 (101)
T ss_dssp             CTTCEEEEEEEEE
T ss_pred             CCCCcEEEEeCCC
Confidence            9999999999776

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=89.33  E-value=1.3  Score=43.94  Aligned_cols=82  Identities=13%  Similarity=-0.006  Sum_probs=51.9

Q ss_pred             eeCCCCCccc--ccccc-cCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEE
Q psy12281        234 YMGPKETWTP--LHADV-FHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSI  310 (456)
Q Consensus       234 ~iG~~gs~T~--lH~D~-~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~L  310 (456)
                      .+.+.+...+  +|+.. ..-+  ..++.|+=++.+=-..                          ....+.+++|||++
T Consensus        53 ~~~p~g~~~~~~~H~H~~~~E~--~~Vl~G~~~~~v~~~~--------------------------g~~~~~~L~~GD~v  104 (350)
T 1juh_A           53 TNAPHSDALGVLPHIHQKHYEN--FYCNKGSFQLWAQSGN--------------------------ETQQTRVLSSGDYG  104 (350)
T ss_dssp             EEECCCSSCSSCCEECSSCEEE--EEEEESEEEEEEEETT--------------------------SCCEEEEEETTCEE
T ss_pred             EEcCCCCCCCCccccCCCceEE--EEEEEEEEEEEECCcC--------------------------CceEEEEECCCCEE
Confidence            3445555455  77765 3344  6789999777762210                          11236789999999


Q ss_pred             EeCCCCeEEEEeCCCcEEEEeecCCCCCHHHHHH
Q psy12281        311 FVPSGWHHQVTNLEHTISINHNWINGTNIDHVYH  344 (456)
Q Consensus       311 fIPsgW~H~V~nl~~sIsvn~~~~~~~nl~~~~~  344 (456)
                      +||++-.|...|.++.- .-.+.+.+..+..++.
T Consensus       105 ~ip~g~~H~~~n~~~~~-~~l~v~~p~~~~~~f~  137 (350)
T 1juh_A          105 SVPRNVTHTFQIQDPDT-EMTGVIVPGGFEDLFY  137 (350)
T ss_dssp             EECTTEEEEEEECSTTE-EEEEEEESSCTTHHHH
T ss_pred             EECCCCcEEEEeCCCCC-EEEEEEcCccHHHHHH
Confidence            99999999999998743 2233334444444433

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=89.14  E-value=0.68  Score=43.32  Aligned_cols=56  Identities=18%  Similarity=0.166  Sum_probs=43.3

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE-eCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF-VPSG  315 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf-IPsg  315 (456)
                      ++|+..+.|......+  ..++.|+=.+.+   +                            .-+.++.|||.+| ||+|
T Consensus        42 ~pg~~~~~H~H~~~e~--~~Vl~G~~~~~~---~----------------------------~~~~~l~~Gd~i~~ip~~   88 (243)
T 3h7j_A           42 PPHTNVEPHQHKEVQI--GMVVSGELMMTV---G----------------------------DVTRKMTALESAYIAPPH   88 (243)
T ss_dssp             CTTEEEEEECCSSEEE--EEEEESEEEEEE---T----------------------------TEEEEEETTTCEEEECTT
T ss_pred             CCCCccCCEECCCcEE--EEEEEeEEEEEE---C----------------------------CEEEEECCCCEEEEcCCC
Confidence            4566678888776555  778888766655   1                            1257899999997 9999


Q ss_pred             CeEEEEeCCC
Q psy12281        316 WHHQVTNLEH  325 (456)
Q Consensus       316 W~H~V~nl~~  325 (456)
                      -.|.+.|.++
T Consensus        89 ~~H~~~n~~~   98 (243)
T 3h7j_A           89 VPHGARNDTD   98 (243)
T ss_dssp             CCEEEEECSS
T ss_pred             CcEeeEeCCC
Confidence            9999999987

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=88.65  E-value=0.37  Score=42.20  Aligned_cols=31  Identities=26%  Similarity=0.320  Sum_probs=25.7

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCcEEEEe
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHTISINH  331 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~  331 (456)
                      +.+++|||++|||+|..|...|.+.+..+..
T Consensus       103 ~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V  133 (151)
T 4axo_A          103 KVSASSGELIFIPKGSKIQFSVPDYARFIYV  133 (151)
T ss_dssp             EEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred             EEEEcCCCEEEECCCCEEEEEeCCCEEEEEE
Confidence            5889999999999999999999865544443

>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}

Probab=88.35  E-value=0.33  Score=39.20  Aligned_cols=37  Identities=19%  Similarity=0.571  Sum_probs=31.8

Q ss_pred             ceEEEec-CCCC--cEEeehhhhhcCCcEEeCCCCcceEE
Q psy12281         20 ETYYYPC-PCGD--RFQITKEQLKAGEDVATCPTCSLIIK   56 (456)
Q Consensus        20 ~~~~~~C-rCg~--~f~i~~~~l~~~~~~~~C~~CSl~i~   56 (456)
                      -...|.| .|+.  .-.|++..-+.|..+|+|++|.-+=.
T Consensus        10 ~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~Hl   49 (100)
T 2e2z_A           10 MMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHL   49 (100)
T ss_dssp             EEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEE
T ss_pred             EEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceE
Confidence            3478899 7995  89999999999999999999987543

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=88.20  E-value=1.3  Score=45.62  Aligned_cols=89  Identities=13%  Similarity=0.012  Sum_probs=54.1

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccC-------------CCcccCCCCCCc
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDM-------------RSVDWSTLPRDT  298 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~-------------~~pd~~~fp~~~  298 (456)
                      .+-|.|.|- .++|+.  ...-|..++.|+=+..++-|+... .|...... ..-             ....-+++...+
T Consensus        54 R~~i~P~gl-~~Ph~h--~a~ei~yV~qG~g~~g~v~pgc~e-tf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~h  128 (465)
T 3qac_A           54 RRTIEPHGL-LLPSFT--SAPELIYIEQGNGITGMMIPGCPE-TYESGSQQ-FQGGEDERIREQGSRKFGMRGDRFQDQH  128 (465)
T ss_dssp             EEEECTTEE-EEEEEE--SSCEEEEEEECEEEEEEECTTCCC-CC-------------------------------CCCC
T ss_pred             EEEEcCCcC-cccEEc--CCCEEEEEEECcEEEEEecCCCCc-eeecchhc-cccccccccccccccccccccccccccc
Confidence            356677554 888887  344568999999999999886532 22100000 000             000000111122


Q ss_pred             eEEEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        299 VIIVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       299 ~~~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      -....+++||+++||+|--|..+|.++
T Consensus       129 qk~~~~~~GDvi~iPaG~~hw~~N~G~  155 (465)
T 3qac_A          129 QKIRHLREGDIFAMPAGVSHWAYNNGD  155 (465)
T ss_dssp             CCEEEEETTEEEEECTTCEEEEECCSS
T ss_pred             cceeeecCCCEEEECCCCeEEEEcCCC
Confidence            335788999999999999999999987

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=88.13  E-value=1.1  Score=41.55  Aligned_cols=57  Identities=16%  Similarity=0.100  Sum_probs=42.5

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|...+.|..+...+  ..++.|+=+..+                               ..-+..++|||.++||++-
T Consensus       161 ~~G~~~~~H~H~~~e~--~~Vl~G~~~~~i-------------------------------~g~~~~l~~Gd~i~ip~~~  207 (227)
T 3rns_A          161 WKGESLDPHKAPGDAL--VTVLDGEGKYYV-------------------------------DGKPFIVKKGESAVLPANI  207 (227)
T ss_dssp             CTTCEEEEECCSSEEE--EEEEEEEEEEEE-------------------------------TTEEEEEETTEEEEECTTS
T ss_pred             CCCCccCCEECCCcEE--EEEEeEEEEEEE-------------------------------CCEEEEECCCCEEEECCCC
Confidence            4455577887665544  777888766554                               0125789999999999999


Q ss_pred             eEEEEe-CCCc
Q psy12281        317 HHQVTN-LEHT  326 (456)
Q Consensus       317 ~H~V~n-l~~s  326 (456)
                      .|.+.| .+++
T Consensus       208 ~H~~~~~~~~~  218 (227)
T 3rns_A          208 PHAVEAETENF  218 (227)
T ss_dssp             CEEEECCSSCE
T ss_pred             cEEEEeCCCCE
Confidence            999999 8774

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=88.03  E-value=0.35  Score=37.96  Aligned_cols=28  Identities=21%  Similarity=0.329  Sum_probs=24.0

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCcEE
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHTIS  328 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~sIs  328 (456)
                      +..+.|||+++||+|-.|...|.+++..
T Consensus        69 ~~~l~~Gd~~~ip~~~~H~~~~~~~~~~   96 (102)
T 3d82_A           69 NITLQAGEMYVIPKGVEHKPMAKEECKI   96 (102)
T ss_dssp             EEEEETTEEEEECTTCCBEEEEEEEEEE
T ss_pred             EEEEcCCCEEEECCCCeEeeEcCCCCEE
Confidence            5789999999999999999999865433

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=87.99  E-value=1.5  Score=38.90  Aligned_cols=28  Identities=11%  Similarity=0.064  Sum_probs=25.0

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCcEE
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHTIS  328 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~sIs  328 (456)
                      +.++.|||.+|||++=.|..+|..+.-+
T Consensus       129 ~~~L~~Gds~~iP~g~~H~~~N~~d~~A  156 (166)
T 2vpv_A          129 KFLSVKGSTFQIPAFNEYAIANRGNDEA  156 (166)
T ss_dssp             EEEEETTCEEEECTTCEEEEEECSSSCE
T ss_pred             EEEEcCCCEEEECCCCCEEEEECCCCCE
Confidence            5789999999999999999999988543

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=87.95  E-value=1.1  Score=46.46  Aligned_cols=88  Identities=16%  Similarity=0.077  Sum_probs=52.9

Q ss_pred             ceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEE
Q psy12281        231 RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSI  310 (456)
Q Consensus       231 ~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~L  310 (456)
                      ..+-|.|.| ..++|+-...  -|..++.|+=+..+.-|+...-+.... .  .. ....-.++....-....+++||++
T Consensus        51 ~r~~l~Pgg-l~~Ph~~~a~--ei~yV~~G~g~~g~v~pg~~et~~~~~-~--~~-~~~~~~~~~d~~qk~~~l~~GDvi  123 (476)
T 1fxz_A           51 SRCTLNRNA-LRRPSYTNGP--QEIYIQQGKGIFGMIYPGCPSTFEEPQ-Q--PQ-QRGQSSRPQDRHQKIYNFREGDLI  123 (476)
T ss_dssp             EEEEECTTE-EEEEEEESSC--EEEEEEECCEEEEEECTTCCCC----------------------CCCCEEEECTTEEE
T ss_pred             EEEEEcCCC-EecceecCCc--eEEEEEecEEEEEEEcCCCcchhhccc-c--cc-ccccccccccccceEEEEeCCCEE
Confidence            345677755 4767765433  468999999999999887543211000 0  00 000000000011235689999999


Q ss_pred             EeCCCCeEEEEeCCC
Q psy12281        311 FVPSGWHHQVTNLEH  325 (456)
Q Consensus       311 fIPsgW~H~V~nl~~  325 (456)
                      +||+|-.|...|.++
T Consensus       124 ~iPaG~~h~~~N~G~  138 (476)
T 1fxz_A          124 AVPTGVAWWMYNNED  138 (476)
T ss_dssp             EECTTCEEEEEECSS
T ss_pred             EECCCCcEEEEeCCC
Confidence            999999999999987

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=87.76  E-value=1.8  Score=39.01  Aligned_cols=80  Identities=18%  Similarity=0.138  Sum_probs=46.8

Q ss_pred             eCCCCCccccccc-ccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--CCEEE
Q psy12281        235 MGPKETWTPLHAD-VFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--GDSIF  311 (456)
Q Consensus       235 iG~~gs~T~lH~D-~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--GD~Lf  311 (456)
                      .+.+|..-.+|+. +...--+..++.|+=.-+++.                 ++. +...|  .+...++|.+  +..||
T Consensus        54 ~s~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD-----------------~R~-~SpTf--g~~~~~~Ls~~n~~~L~  113 (185)
T 1ep0_A           54 MSVRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVD-----------------LRK-NSDTY--GEWTGVRLSDENRREFF  113 (185)
T ss_dssp             EEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEE-----------------CCT-TCTTT--TCEEEEEEETTTCCEEE
T ss_pred             eCcCCeEecceecCCccccEEEEEeCCeEEEEEEE-----------------CCC-CCCCC--CeEEEEEecCCCCCEEE
Confidence            3446777788877 111122356677763333322                 211 11111  3455666654  69999


Q ss_pred             eCCCCeEEEEeCCCcEEEEeecCC
Q psy12281        312 VPSGWHHQVTNLEHTISINHNWIN  335 (456)
Q Consensus       312 IPsgW~H~V~nl~~sIsvn~~~~~  335 (456)
                      ||.|+||...++++. ++-..+++
T Consensus       114 IP~G~aHgf~~lsd~-a~~~y~~s  136 (185)
T 1ep0_A          114 IPEGFAHGFLALSDE-CIVNYKCT  136 (185)
T ss_dssp             ECTTEEEEEEECSSE-EEEEEEES
T ss_pred             eCCCeEEEEEEcCCC-eEEEEecC
Confidence            999999999999997 44443443

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=87.47  E-value=1.9  Score=36.81  Aligned_cols=60  Identities=15%  Similarity=0.076  Sum_probs=43.6

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +.+. +|..++.|.....-+  ..++.|+=+..+            .+                 +. ...+.|||+++|
T Consensus        53 ~~~~-pg~~~~~H~H~~~E~--~~Vl~G~~~~~~------------~~-----------------~~-~~~l~~Gd~i~i   99 (147)
T 2f4p_A           53 VVFE-PGARTHWHSHPGGQI--LIVTRGKGFYQE------------RG-----------------KP-ARILKKGDVVEI   99 (147)
T ss_dssp             EEEC-TTCEECSEECTTCEE--EEEEEEEEEEEE------------TT-----------------SC-CEEEETTCEEEE
T ss_pred             EEEC-CCCccCceECCCceE--EEEEeCEEEEEE------------CC-----------------EE-EEEECCCCEEEE
Confidence            3444 455578888776555  778899876654            00                 00 167999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |++=.|...|.++
T Consensus       100 p~~~~H~~~n~~~  112 (147)
T 2f4p_A          100 PPNVVHWHGAAPD  112 (147)
T ss_dssp             CTTCCEEEEEBTT
T ss_pred             CCCCcEEeEeCCC
Confidence            9999999999876

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=87.44  E-value=0.96  Score=46.71  Aligned_cols=86  Identities=16%  Similarity=0.115  Sum_probs=53.0

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-|.|.| ..++|+-.  ..-|..++.|+=+..+.-|+......... .  ..-..  -..+...+-..-.+++||+++
T Consensus        67 r~~i~pgg-l~~Ph~h~--a~ei~yVl~G~g~vg~v~p~~~~tf~~~~-~--~~~~~--~~~~~d~~q~~~~l~~GDv~~  138 (459)
T 2e9q_A           67 RHTIRPKG-LLLPGFSN--APKLIFVAQGFGIRGIAIPGCAETYQTDL-R--RSQSA--GSAFKDQHQKIRPFREGDLLV  138 (459)
T ss_dssp             EEEECTTE-EEEEEEES--SCEEEEEEECEEEEEECCTTCCCCEEECC-C-----------CCCEEECCCEEEETTEEEE
T ss_pred             EEEEcCCC-EecceecC--CceEEEEEeeEEEEEEEeCCCcchhccch-h--hcccc--ccccccccceeEEecCCCEEE
Confidence            35666655 47777754  33569999999999999777533221100 0  00000  000000111235899999999


Q ss_pred             eCCCCeEEEEeCCC
Q psy12281        312 VPSGWHHQVTNLEH  325 (456)
Q Consensus       312 IPsgW~H~V~nl~~  325 (456)
                      ||+|-.|...|.++
T Consensus       139 iPaG~~H~~~N~g~  152 (459)
T 2e9q_A          139 VPAGVSHWMYNRGQ  152 (459)
T ss_dssp             ECTTCCEEEEECSS
T ss_pred             ECCCCCEEEEeCCC
Confidence            99999999999987

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=87.37  E-value=0.48  Score=39.36  Aligned_cols=54  Identities=19%  Similarity=0.052  Sum_probs=39.1

Q ss_pred             CCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeE
Q psy12281        239 ETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHH  318 (456)
Q Consensus       239 gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H  318 (456)
                      |..++.|......+  ..++.|+=+..+                               ..-+..+.|||++++|+|-.|
T Consensus        58 g~~~~~H~H~~~e~--~~Vl~G~~~~~i-------------------------------~~~~~~l~~Gd~i~ip~g~~H  104 (126)
T 1vj2_A           58 GGLIDRHSHPWEHE--IFVLKGKLTVLK-------------------------------EQGEETVEEGFYIFVEPNEIH  104 (126)
T ss_dssp             EEEEEEECCSSCEE--EEEEESEEEEEC-------------------------------SSCEEEEETTEEEEECTTCCE
T ss_pred             CCcCCceeCCCcEE--EEEEEeEEEEEE-------------------------------CCEEEEECCCCEEEECCCCcE
Confidence            44466777665544  667777755543                               011478999999999999999


Q ss_pred             EEEeCCC
Q psy12281        319 QVTNLEH  325 (456)
Q Consensus       319 ~V~nl~~  325 (456)
                      ...|.++
T Consensus       105 ~~~~~~~  111 (126)
T 1vj2_A          105 GFRNDTD  111 (126)
T ss_dssp             EEECCSS
T ss_pred             EeEeCCC
Confidence            9999875

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=87.36  E-value=0.55  Score=43.93  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=23.3

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      +.+++|||++++|++-.|++.|.++
T Consensus       185 ~~~l~~Gd~i~ip~~~~H~~~n~~~  209 (243)
T 3h7j_A          185 TVEMKFGTAYFCEPREDHGAINRSE  209 (243)
T ss_dssp             EEEECTTCEEEECTTCCEEEEECSS
T ss_pred             EEEECCCCEEEECCCCcEEeEeCCC
Confidence            5789999999999999999999966

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=87.32  E-value=2  Score=38.77  Aligned_cols=80  Identities=13%  Similarity=0.057  Sum_probs=47.1

Q ss_pred             eCCCCCccccccc-ccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--CCEEE
Q psy12281        235 MGPKETWTPLHAD-VFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--GDSIF  311 (456)
Q Consensus       235 iG~~gs~T~lH~D-~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--GD~Lf  311 (456)
                      .+.+|..-.+|+. +...--+..++.|+=.-+++.-..        |       +|.   |  .+...++|.+  +..||
T Consensus        55 ~s~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~--------~-------SpT---f--g~~~~~~Ls~~n~~~L~  114 (184)
T 2ixk_A           55 RSARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRR--------G-------SPT---F--GQWVGERLSAENKRQMW  114 (184)
T ss_dssp             EEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBT--------T-------STT---T--TCEEEEEEETTTCCEEE
T ss_pred             eCCCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCC--------C-------CCC---C--CeEEEEEeCCCcCCEEE
Confidence            4456887888887 111122366677773333321110        0       111   1  3455666665  68999


Q ss_pred             eCCCCeEEEEeCCCcEEEEeecCC
Q psy12281        312 VPSGWHHQVTNLEHTISINHNWIN  335 (456)
Q Consensus       312 IPsgW~H~V~nl~~sIsvn~~~~~  335 (456)
                      ||.|+||...++++. ++-..+++
T Consensus       115 IP~G~aHgf~~lsd~-a~~~y~~s  137 (184)
T 2ixk_A          115 IPAGFAHGFVVLSEY-AEFLYKTT  137 (184)
T ss_dssp             ECTTEEEEEEECSSE-EEEEEEES
T ss_pred             eCCCeEEEEEEcCCC-EEEEEeCC
Confidence            999999999999996 44443444

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=87.22  E-value=1.2  Score=39.78  Aligned_cols=27  Identities=19%  Similarity=0.126  Sum_probs=24.1

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCcE
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHTI  327 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~sI  327 (456)
                      +..++|||++|+|++=.|...|.++.-
T Consensus       145 ~~~l~~GD~i~i~~~~~H~~~n~~~~~  171 (192)
T 1y9q_A          145 WHELQQGEHIRFFSDQPHGYAAVTEKA  171 (192)
T ss_dssp             EEEECTTCEEEEECSSSEEEEESSSCE
T ss_pred             EEEeCCCCEEEEcCCCCeEeECCCCCc
Confidence            578999999999999999999997743

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=87.09  E-value=3.4  Score=37.38  Aligned_cols=56  Identities=23%  Similarity=0.211  Sum_probs=43.0

Q ss_pred             ccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEEE
Q psy12281        242 TPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVT  321 (456)
Q Consensus       242 T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V~  321 (456)
                      .+.|.....-+  ...+.|+=.+.+-...                          .+.+++.++|||+|+||+|=.|...
T Consensus        97 ~~~H~H~~~Ei--~yVleG~G~f~i~d~~--------------------------d~~~~i~v~~GDlIiIPaG~~H~f~  148 (191)
T 1vr3_A           97 FEEHLHLDEEI--RYILEGSGYFDVRDKE--------------------------DKWIRISMEKGDMITLPAGIYHRFT  148 (191)
T ss_dssp             HSCEECSSCEE--EEEEEEEEEEEEECTT--------------------------SCEEEEEEETTEEEEECTTCCEEEE
T ss_pred             CcceECCcceE--EEEEeceEEEEECCCC--------------------------CeEEEEEECCCCEEEECcCCcCCcc
Confidence            36787776666  7889998777763210                          2356789999999999999999998


Q ss_pred             eCCC
Q psy12281        322 NLEH  325 (456)
Q Consensus       322 nl~~  325 (456)
                      +.++
T Consensus       149 ~~~~  152 (191)
T 1vr3_A          149 LDEK  152 (191)
T ss_dssp             ECTT
T ss_pred             cCCC
Confidence            8766

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=86.98  E-value=0.64  Score=36.98  Aligned_cols=27  Identities=15%  Similarity=0.268  Sum_probs=24.3

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCcE
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHTI  327 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~sI  327 (456)
                      +..++|||+++||+|-.|...|.+++.
T Consensus        75 ~~~l~~Gd~~~ip~~~~H~~~~~~~~~  101 (110)
T 2q30_A           75 VIPAPRGAVLVAPISTPHGVRAVTDMK  101 (110)
T ss_dssp             EEEECTTEEEEEETTSCEEEEESSSEE
T ss_pred             EEEECCCCEEEeCCCCcEEEEEcCCcE
Confidence            578999999999999999999998743

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=86.74  E-value=1.3  Score=45.10  Aligned_cols=64  Identities=20%  Similarity=0.226  Sum_probs=47.5

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-+.|.|...|-|.|   ......++.|+=+..++.|+.                           .....+++||+++
T Consensus        48 ~~~l~p~gl~~Phh~~---A~ei~yV~~G~g~~g~V~~~~---------------------------~~~~~l~~GDv~~   97 (418)
T 3s7i_A           48 QIEAKPNTLVLPKHAD---ADNILVIQQGQATVTVANGNN---------------------------RKSFNLDEGHALR   97 (418)
T ss_dssp             EEEECTTEEEEEEEES---EEEEEEEEESEEEEEEECSSC---------------------------EEEEEEETTEEEE
T ss_pred             EEEecCCceeeeeeCC---CCeEEEEEEeeEEEEEEecCC---------------------------EEEEEecCCCEEE
Confidence            3566776665555544   333468899998888887642                           1246899999999


Q ss_pred             eCCCCeEEEEeCCC
Q psy12281        312 VPSGWHHQVTNLEH  325 (456)
Q Consensus       312 IPsgW~H~V~nl~~  325 (456)
                      ||+|.-|...|.++
T Consensus        98 ~P~G~~h~~~N~g~  111 (418)
T 3s7i_A           98 IPSGFISYILNRHD  111 (418)
T ss_dssp             ECTTCEEEEEECCS
T ss_pred             ECCCCeEEEEecCC
Confidence            99999999999865

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=85.30  E-value=1.8  Score=44.01  Aligned_cols=88  Identities=11%  Similarity=0.004  Sum_probs=54.8

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCcc-ccCCC-cccCCCC-CCceEEEEEcCCC
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLI-SDMRS-VDWSTLP-RDTVIIVEQEAGD  308 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p-~d~~~-pd~~~fp-~~~~~~~~l~pGD  308 (456)
                      .+-+.+.| ..++|+.+.. ..|..++.|+=+..++.|+....    .+..- -.-.. ..-++.. +.+.+...+++||
T Consensus       267 r~~l~pgg-~~~PH~~p~A-~ei~yV~~G~g~v~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD  340 (418)
T 3s7i_A          267 CVEIKEGA-LMLPHFNSKA-MVIVVVNKGTGNLELVAVRKEQQ----QRGRREEEEDEDEEEEGSNREVRRYTARLKEGD  340 (418)
T ss_dssp             EEEECTTE-EEEEEEESSC-EEEEEEEECCEEEEEEEEEEC-----------------------CCEEEEEEEEEECTTC
T ss_pred             EEEecCCc-eeCceecCCC-CEEEEEEeCeEEEEEEeCCCccc----cccccccccccccccccccccceEEEeeeCCCC
Confidence            35566644 5899997754 45899999999999997753210    00000 00000 0000000 1256788999999


Q ss_pred             EEEeCCCCeEEEEeCCC
Q psy12281        309 SIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       309 ~LfIPsgW~H~V~nl~~  325 (456)
                      +++||.|..|...|.++
T Consensus       341 V~vvP~G~~~~~~~~~~  357 (418)
T 3s7i_A          341 VFIMPAAHPVAINASSE  357 (418)
T ss_dssp             EEEECTTCCEEEEESSC
T ss_pred             EEEECCCCEEEEECCCC
Confidence            99999999999999776

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=85.24  E-value=1.7  Score=45.24  Aligned_cols=90  Identities=14%  Similarity=0.127  Sum_probs=53.2

Q ss_pred             ceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCc-ccCCCCCCceEEEEEcCCCE
Q psy12281        231 RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSV-DWSTLPRDTVIIVEQEAGDS  309 (456)
Q Consensus       231 ~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~p-d~~~fp~~~~~~~~l~pGD~  309 (456)
                      ..+-|-|.|- ..+|+-...  -|..++.|+=+..+.-|+...-.......  ..-... .-..+....-....+++||+
T Consensus        48 ~r~~i~pggl-~~Ph~~~~~--~i~yV~~G~g~vg~v~pgc~et~~~~~~~--~~~~~~~~~~~~~d~~qkv~~l~~GDv  122 (493)
T 2d5f_A           48 SKRTLNRNGL-HLPSYSPYP--QMIIVVQGKGAIGFAFPGCPETFEKPQQQ--SSRRGSRSQQQLQDSHQKIRHFNEGDV  122 (493)
T ss_dssp             EEEEECTTEE-EEEEECSSC--EEEEEEECEEEEEECCTTCCCCEEECC---------------CSEEESCEEEEETTEE
T ss_pred             EEEEeCCCcE-eCceecCCC--eEEEEEeCEEEEEEEeCCCcccccccccc--ccccccccccccccccceEEEecCCCE
Confidence            4456666554 677776543  46899999999999988764321110000  000000 00000000011338999999


Q ss_pred             EEeCCCCeEEEEeCCC
Q psy12281        310 IFVPSGWHHQVTNLEH  325 (456)
Q Consensus       310 LfIPsgW~H~V~nl~~  325 (456)
                      ++||+|-.|...|.++
T Consensus       123 i~iPaG~~h~~~N~g~  138 (493)
T 2d5f_A          123 LVIPPGVPYWTYNTGD  138 (493)
T ss_dssp             EEECTTCCEEEEECSS
T ss_pred             EEECCCCcEEEEeCCC
Confidence            9999999999999987

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=85.09  E-value=0.68  Score=37.00  Aligned_cols=26  Identities=15%  Similarity=0.216  Sum_probs=23.1

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCc
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHT  326 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~s  326 (456)
                      +..+.|||+++||+|=.|...|.+++
T Consensus        68 ~~~l~~Gd~~~ip~~~~H~~~~~~~~   93 (107)
T 2i45_A           68 SMTIREGEMAVVPKSVSHRPRSENGC   93 (107)
T ss_dssp             EEEECTTEEEEECTTCCEEEEEEEEE
T ss_pred             EEEECCCCEEEECCCCcEeeEeCCCe
Confidence            57899999999999999999996554

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=85.05  E-value=3.1  Score=37.41  Aligned_cols=72  Identities=15%  Similarity=0.130  Sum_probs=44.7

Q ss_pred             eCCCCCcccccccc--cCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--CCEE
Q psy12281        235 MGPKETWTPLHADV--FHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--GDSI  310 (456)
Q Consensus       235 iG~~gs~T~lH~D~--~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--GD~L  310 (456)
                      .+.+|..-.+|+..  ...--+..++.|+=.-+++.-..               .+|.   |  .+...++|.+  +..|
T Consensus        53 ~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~---------------~SpT---f--g~~~~~~Ls~~n~~~L  112 (183)
T 1dzr_A           53 KSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRK---------------ESPT---F--GQWVGVNLSAENKRQL  112 (183)
T ss_dssp             EEETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCT---------------TCTT---T--TCEEEEEEETTTCCEE
T ss_pred             eCCCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCC---------------CCCC---C--CeEEEEEecCCCCCEE
Confidence            44568878888874  12222366778874333332111               0111   1  3455666655  6899


Q ss_pred             EeCCCCeEEEEeCCCc
Q psy12281        311 FVPSGWHHQVTNLEHT  326 (456)
Q Consensus       311 fIPsgW~H~V~nl~~s  326 (456)
                      |||.|+||...++++.
T Consensus       113 ~IP~G~aHgf~~lsd~  128 (183)
T 1dzr_A          113 WIPEGFAHGFVTLSEY  128 (183)
T ss_dssp             EECTTEEEEEEECSSE
T ss_pred             EeCCCeEEEEEEcCCC
Confidence            9999999999999986

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=84.69  E-value=5.1  Score=36.41  Aligned_cols=77  Identities=18%  Similarity=0.174  Sum_probs=48.0

Q ss_pred             eCCCCCccccccccc--CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEc--CCCEE
Q psy12281        235 MGPKETWTPLHADVF--HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQE--AGDSI  310 (456)
Q Consensus       235 iG~~gs~T~lH~D~~--~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~--pGD~L  310 (456)
                      .+.+|..-.+|+...  ..--+..++.|+=.-+++.-...               +|.+     .+...++|.  ++..|
T Consensus        71 ~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~---------------SpTf-----G~~~~v~Ls~en~~~L  130 (196)
T 1wlt_A           71 FSRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKS---------------SPTF-----GKYVKAELNEENHYML  130 (196)
T ss_dssp             EECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTT---------------STTT-----TCEEEEEEETTTCCEE
T ss_pred             ECCCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCC---------------CCCC-----CeEEEEEecCCCCCEE
Confidence            456788788888753  22222566777654444322111               1111     345566666  57999


Q ss_pred             EeCCCCeEEEEeCCCcEEEEe
Q psy12281        311 FVPSGWHHQVTNLEHTISINH  331 (456)
Q Consensus       311 fIPsgW~H~V~nl~~sIsvn~  331 (456)
                      |||.|+||...++++.-.+.+
T Consensus       131 ~IP~G~aHgf~~lsd~a~~ly  151 (196)
T 1wlt_A          131 WIPPGFAHGFQALEDSIVIYF  151 (196)
T ss_dssp             EECTTEEEEEEESSSEEEEEE
T ss_pred             EeCCCeEEEEEEcCCCeEEEE
Confidence            999999999999999544444

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=84.27  E-value=2.5  Score=41.85  Aligned_cols=57  Identities=16%  Similarity=0.021  Sum_probs=41.6

Q ss_pred             CCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCe
Q psy12281        238 KETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWH  317 (456)
Q Consensus       238 ~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~  317 (456)
                      +|...+.|.-..+-.  ..++.|+=++.+=            |.                  -+.++++||++|||+|-.
T Consensus       261 ~g~~~~~h~~~~~~~--~~vleG~~~i~i~------------g~------------------~~~~l~~Gd~~~iPag~~  308 (350)
T 1juh_A          261 STVTVPTWSFPGACA--FQVQEGRVVVQIG------------DY------------------AATELGSGDVAFIPGGVE  308 (350)
T ss_dssp             TTSCCCCBCCSSCEE--EEEEESCEEEEET------------TS------------------CCEEECTTCEEEECTTCC
T ss_pred             CCCCCCcccCCCcEE--EEEEeeEEEEEEC------------Ce------------------EEEEeCCCCEEEECCCCC
Confidence            355566775555555  6777777666661            10                  147999999999999999


Q ss_pred             EEEEeCCCc
Q psy12281        318 HQVTNLEHT  326 (456)
Q Consensus       318 H~V~nl~~s  326 (456)
                      |++.+.++.
T Consensus       309 h~~~~~~~~  317 (350)
T 1juh_A          309 FKYYSEAYF  317 (350)
T ss_dssp             EEEEESSSS
T ss_pred             EEEEecCCe
Confidence            999998874

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=83.45  E-value=7  Score=33.50  Aligned_cols=66  Identities=12%  Similarity=0.112  Sum_probs=45.3

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC-CCEEEeCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA-GDSIFVPSG  315 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p-GD~LfIPsg  315 (456)
                      ++|+.-.+|+..... -+.+.+.|+=+++|.....                           .-+++|.+ --.|+||+|
T Consensus        43 ~~g~~RG~H~Hk~~~-q~li~l~Gs~~v~ldDg~~---------------------------~~~~~L~~~~~gL~Ippg   94 (141)
T 2pa7_A           43 KGEEPRGFHAHKKLE-QVLVCLNGSCRVILDDGNI---------------------------IQEITLDSPAVGLYVGPA   94 (141)
T ss_dssp             CSSCCEEEEEESSCC-EEEEEEESCEEEEEECSSC---------------------------EEEEEECCTTEEEEECTT
T ss_pred             CCCCEECcCcCCCce-EEEEEEccEEEEEEECCcE---------------------------EEEEEECCCCcEEEeCCC
Confidence            377778888765433 4578899999999843221                           12344433 336999999


Q ss_pred             CeEEEEeCCC-cEEEE
Q psy12281        316 WHHQVTNLEH-TISIN  330 (456)
Q Consensus       316 W~H~V~nl~~-sIsvn  330 (456)
                      -||...++++ +|-++
T Consensus        95 vWh~~~~~s~~avllv  110 (141)
T 2pa7_A           95 VWHEMHDFSSDCVMMV  110 (141)
T ss_dssp             CEEEEECCCTTCEEEE
T ss_pred             EEEEEEEcCCCeEEEE
Confidence            9999999987 44444

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=83.39  E-value=7.9  Score=35.37  Aligned_cols=75  Identities=15%  Similarity=0.057  Sum_probs=47.1

Q ss_pred             CCCCccccccccc--CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--CCEEEe
Q psy12281        237 PKETWTPLHADVF--HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--GDSIFV  312 (456)
Q Consensus       237 ~~gs~T~lH~D~~--~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--GD~LfI  312 (456)
                      .+|+.-.+|+...  ..--+..++.|+=.=+++.-...               +|.   |  .+...++|.+  +-.|||
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~---------------SpT---f--g~~~~~~Ls~~n~~~L~I  137 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKD---------------SPT---F--KQWRGYILSADNHRQLLV  137 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTT---------------STT---T--TCEEEEEEETTTCCEEEE
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCC---------------CCC---C--CeEEEEEecCCCCCEEEe
Confidence            6788888998742  22223677777733333221110               111   1  3456677764  899999


Q ss_pred             CCCCeEEEEeCCCcEEEEe
Q psy12281        313 PSGWHHQVTNLEHTISINH  331 (456)
Q Consensus       313 PsgW~H~V~nl~~sIsvn~  331 (456)
                      |.|+||...++++.--+.+
T Consensus       138 P~G~aHGF~~Lsd~a~~~Y  156 (205)
T 3ryk_A          138 PKGFAHGFCTLVPHTIVMY  156 (205)
T ss_dssp             CTTEEEEEEECSSSEEEEE
T ss_pred             CCCceEEEEEcCCCEEEEE
Confidence            9999999999998544444

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=82.97  E-value=5.6  Score=33.15  Aligned_cols=61  Identities=18%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEE
Q psy12281        250 HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISI  329 (456)
Q Consensus       250 ~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsv  329 (456)
                      ++.+...++.|+=+++.+..+...                       ...-++.+.+|+.-+||+.-||.|. +.+-+.+
T Consensus        37 GtWgkL~Vl~G~Lkf~~~~e~~~~-----------------------~~~~~~~~~~~~~~~i~Pq~wHrVe-~sdD~~f   92 (119)
T 3dl3_A           37 DVFGQICVMEGVVTYYGFANSEAT-----------------------EPEIKVVINAGQFATSPPQYWHRIE-LSDDAQF   92 (119)
T ss_dssp             TEEEEEEEEESEEEEEEESSTTCC-----------------------SCSEEEEEETTEEEEECTTCEEEEE-ECTTCEE
T ss_pred             cEEEEEEEEEeEEEEEEEcCCCCC-----------------------cccEEEEeCCCCCceeCCCceEEEE-ECCCeEE
Confidence            345557889999999987654321                       1124678899999999999999999 6664444


Q ss_pred             EeecC
Q psy12281        330 NHNWI  334 (456)
Q Consensus       330 n~~~~  334 (456)
                      +..|.
T Consensus        93 ~leFy   97 (119)
T 3dl3_A           93 NINFW   97 (119)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=82.70  E-value=7.5  Score=36.08  Aligned_cols=73  Identities=14%  Similarity=0.145  Sum_probs=45.9

Q ss_pred             eeCCCCCccccccccc--CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--CCE
Q psy12281        234 YMGPKETWTPLHADVF--HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--GDS  309 (456)
Q Consensus       234 ~iG~~gs~T~lH~D~~--~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--GD~  309 (456)
                      -.+.+|..-.+|+...  ..--+..++.|+=.-+++.-...               +|.+     .+...++|.+  +..
T Consensus        71 S~s~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~---------------SpTf-----G~~~~v~Ls~~n~~~  130 (225)
T 1upi_A           71 SVSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREG---------------SPTF-----GRWDSVLLDDQDRRT  130 (225)
T ss_dssp             EEECTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBT---------------CTTT-----TCEEEEEEETTTCCE
T ss_pred             EeCCCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCC---------------CCCC-----CcEEEEEecCCCCcE
Confidence            4456788888998753  22223677788743333321110               1111     3456666665  589


Q ss_pred             EEeCCCCeEEEEeCCCc
Q psy12281        310 IFVPSGWHHQVTNLEHT  326 (456)
Q Consensus       310 LfIPsgW~H~V~nl~~s  326 (456)
                      ||||.|+||...++++.
T Consensus       131 L~IP~G~aHgF~~Lsd~  147 (225)
T 1upi_A          131 IYVSEGLAHGFLALQDN  147 (225)
T ss_dssp             EEECTTCEEEEEECSSS
T ss_pred             EEeCCCeeEEEEEcCCC
Confidence            99999999999999985

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=82.44  E-value=3.5  Score=37.55  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=29.7

Q ss_pred             CceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEEee
Q psy12281        297 DTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN  332 (456)
Q Consensus       297 ~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn~~  332 (456)
                      .+...++|.++-.||||.|.||.-.++++...+.+.
T Consensus       106 g~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~a~~~y~  141 (197)
T 1nxm_A          106 GNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYL  141 (197)
T ss_dssp             TCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CeEEEEEeCCCcEEEeCCCeEEEEEeccCCeEEEEE
Confidence            456778888999999999999999999996545543

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=82.25  E-value=1.1  Score=37.92  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=22.8

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCc
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHT  326 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~s  326 (456)
                      +.+++|||++|+|+|..|...|.++.
T Consensus        94 ~~~l~~GD~i~~p~g~~h~~~~~~~~  119 (133)
T 2pyt_A           94 TMIAKAGDVMFIPKGSSIEFGTPTSV  119 (133)
T ss_dssp             EEEEETTCEEEECTTCEEEEEEEEEE
T ss_pred             EEEECCCcEEEECCCCEEEEEeCCCE
Confidence            46899999999999999999986653

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=81.72  E-value=5.7  Score=36.65  Aligned_cols=73  Identities=7%  Similarity=0.038  Sum_probs=45.0

Q ss_pred             eeCCCCCccccccccc--CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--CCE
Q psy12281        234 YMGPKETWTPLHADVF--HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--GDS  309 (456)
Q Consensus       234 ~iG~~gs~T~lH~D~~--~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--GD~  309 (456)
                      -.+.+|..-.+|+...  ..--+..++.|+=.-+++.-...               +|.+     .+...++|.+  +..
T Consensus        60 S~s~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~---------------SpTf-----G~~~~v~Ls~~n~~~  119 (216)
T 2c0z_A           60 SVSVRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVG---------------SPTY-----GCWEGTRLDDVSRRA  119 (216)
T ss_dssp             EEEETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBT---------------CTTT-----TCEEEEEEETTTCCE
T ss_pred             EeCCCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCC---------------CCCC-----CeEEEEEecCCCCCE
Confidence            3445788788888753  11222667788733333221110               1111     3456666665  589


Q ss_pred             EEeCCCCeEEEEeCCCc
Q psy12281        310 IFVPSGWHHQVTNLEHT  326 (456)
Q Consensus       310 LfIPsgW~H~V~nl~~s  326 (456)
                      ||||.|+||...++++.
T Consensus       120 L~IP~G~aHgF~~Lsd~  136 (216)
T 2c0z_A          120 VYLSEGIGHGFCAISDE  136 (216)
T ss_dssp             EEECTTEEEEEEECSSE
T ss_pred             EEeCCCeeEEEEEcCCC
Confidence            99999999999999985

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=81.38  E-value=11  Score=34.44  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=44.6

Q ss_pred             eCCCCCccccccccc--CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--CCEE
Q psy12281        235 MGPKETWTPLHADVF--HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--GDSI  310 (456)
Q Consensus       235 iG~~gs~T~lH~D~~--~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--GD~L  310 (456)
                      .+.+|..-.+|+...  ..--+..++.|+=.-+++.-..               .+|.+     .+...++|.+  +..|
T Consensus        53 ~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~---------------~SpTf-----G~~~~v~Ls~~n~~~L  112 (205)
T 1oi6_A           53 MSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRV---------------GSPTF-----GQWDSVLMDQQDPRAV  112 (205)
T ss_dssp             EECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCB---------------TCTTT-----TCEEEEEECSSSCCEE
T ss_pred             eCCCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCC---------------CCCCC-----CeEEEEEecCCCCCEE
Confidence            456788788888742  1222256667763333322111               01111     3566777766  5899


Q ss_pred             EeCCCCeEEEEeCCCc
Q psy12281        311 FVPSGWHHQVTNLEHT  326 (456)
Q Consensus       311 fIPsgW~H~V~nl~~s  326 (456)
                      |||.|+||...++++.
T Consensus       113 ~IP~G~aHgf~~lsd~  128 (205)
T 1oi6_A          113 YLPVGVGHAFVALEDD  128 (205)
T ss_dssp             EECTTCEEEEEECSTT
T ss_pred             EeCCCeeEEEEEccCC
Confidence            9999999999999985

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=81.34  E-value=1.8  Score=38.64  Aligned_cols=62  Identities=24%  Similarity=0.226  Sum_probs=43.7

Q ss_pred             ceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEE
Q psy12281        231 RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSI  310 (456)
Q Consensus       231 ~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~L  310 (456)
                      +.+-+.| |+.+++|.....-+  ..++.|+=.+.+=                              ..-+.+|+|||++
T Consensus        82 ~~v~l~P-G~~~~~H~H~~eE~--~~VLeGel~l~ld------------------------------~ge~~~L~~GDsi  128 (172)
T 3es1_A           82 RVVDMLP-GKESPMHRTNSIDY--GIVLEGEIELELD------------------------------DGAKRTVRQGGII  128 (172)
T ss_dssp             EEEEECT-TCBCCCBCCSEEEE--EEEEESCEEEECG------------------------------GGCEEEECTTCEE
T ss_pred             EEEEECC-CCCCCCeecCceEE--EEEEeCEEEEEEC------------------------------CCeEEEECCCCEE
Confidence            3344555 44588888765555  5778877555440                              0115789999999


Q ss_pred             EeCCCCeEEEEeCCCc
Q psy12281        311 FVPSGWHHQVTNLEHT  326 (456)
Q Consensus       311 fIPsgW~H~V~nl~~s  326 (456)
                       +|++-.|+..|.++.
T Consensus       129 -~~~g~~H~~~N~g~~  143 (172)
T 3es1_A          129 -VQRGTNHLWRNTTDK  143 (172)
T ss_dssp             -EECSCCBEEECCSSS
T ss_pred             -EeCCCcEEEEeCCCC
Confidence             999999999999874

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=81.25  E-value=3.3  Score=42.72  Aligned_cols=91  Identities=15%  Similarity=0.021  Sum_probs=54.1

Q ss_pred             ceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCC----C-CccccCC------------------
Q psy12281        231 RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSM----G-NLISDMR------------------  287 (456)
Q Consensus       231 ~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~----g-~~p~d~~------------------  287 (456)
                      ..+-+.|.|- .++|+-....+  ..++.|+=..-++.|+...-.....    + .-|+...                  
T Consensus        46 ~r~~i~p~Gl-~lPh~~~a~e~--~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (466)
T 3kgl_A           46 VRYIIESKGL-YLPSFFSTAKL--SFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQG  122 (466)
T ss_dssp             EEEEECTTEE-EEEEEESSCEE--EEEEECEEEEEEECTTCCCCEEECCSSCCCC-------------------------
T ss_pred             EEEEECCCCE-eCCeeCCCCeE--EEEEeCeEEEEEecCCCcchhhcccccccccccccccccccccccccccccccccc
Confidence            3467777665 66666655555  7899999999999997655321100    0 0000000                  


Q ss_pred             ------Cc----ccCCCCC-CceEEEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        288 ------SV----DWSTLPR-DTVIIVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       288 ------~p----d~~~fp~-~~~~~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                            ..    .-+++.. ... .-.+++||+++||+|.-|..+|.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~d~hqk-v~~l~~GDvi~iPaG~~~~~~N~g~  170 (466)
T 3kgl_A          123 QQGQQGQQGQQSQGQGFRDMHQK-VEHIRTGDTIATHPGVAQWFYNDGN  170 (466)
T ss_dssp             ----------------CCEEESC-EEEEETTEEEEECTTCEEEEECCSS
T ss_pred             cccccccccccccccccccccee-eccccCCCEEEECCCCcEEEEeCCC
Confidence                  00    0001111 111 2378999999999999999999987

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=80.69  E-value=3.8  Score=38.88  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=23.1

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      +..++|||+++||++=.|...|.++
T Consensus       222 ~~~l~~GD~i~i~~~~~H~~~n~~~  246 (274)
T 1sef_A          222 WYPVEKGDYIFMSAYVPQAAYAVGR  246 (274)
T ss_dssp             EEEEETTCEEEECTTCCEEEEEECS
T ss_pred             EEEECCCCEEEECCCCCEEEEeCCC
Confidence            5789999999999999999999866

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=80.33  E-value=3.2  Score=43.36  Aligned_cols=93  Identities=17%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             ceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCC--CCc------cccCCCcccC-CCCCCceEE
Q psy12281        231 RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSM--GNL------ISDMRSVDWS-TLPRDTVII  301 (456)
Q Consensus       231 ~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~--g~~------p~d~~~pd~~-~fp~~~~~~  301 (456)
                      ..+-|.|.|- ...|+-...  -|..++.|+=...+.-|+.........  ++-      .-.....+-. ++....-..
T Consensus        51 ~r~~i~p~gl-~lPh~~~a~--~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv  127 (510)
T 3c3v_A           51 SRLVLRRNAL-RRPFYSNAP--QEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKV  127 (510)
T ss_dssp             EEEEECTTEE-EEEEECSSC--EEEEEEECCEEEEEECTTCCCCEEEECCC--------------------CEEEEESCC
T ss_pred             EEEEECCCCC-ccceecCCC--eEEEEEeCEEEEEEEeCCCccccccccccccccccccccccccccccccccccccceE
Confidence            4466777665 677775433  468999999999999887532111000  000      0000000000 000001123


Q ss_pred             EEEcCCCEEEeCCCCeEEEEeCCCc
Q psy12281        302 VEQEAGDSIFVPSGWHHQVTNLEHT  326 (456)
Q Consensus       302 ~~l~pGD~LfIPsgW~H~V~nl~~s  326 (456)
                      ..+++||+++||+|-.|...|.+++
T Consensus       128 ~~v~~GDvi~iPaG~~hw~~N~g~~  152 (510)
T 3c3v_A          128 HRFNEGDLIAVPTGVAFWLYNDHDT  152 (510)
T ss_dssp             EEECTTEEEEECTTCEEEEEECSSS
T ss_pred             EEecCCCEEEECCCCCEEEEeCCCC
Confidence            5899999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d1wgea1	70	g.41.17.1 (A:8-77) DelGEF-interacting protein 1, D	2e-29
d1ywsa1	82	g.41.17.1 (A:1-82) Diphthamide biosynthesis protei	2e-26
d1h2ka_	335	b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibit	1e-25
d1vrba1	319	b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla	2e-16

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 70

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (269), Expect = 2e-29
 Identities = 44/56 (78%), Positives = 51/56 (91%)

Query: 1  MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          M+V+HDE+EIEDF+YDED ETY+YPCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 1  MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIK 56

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 82

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 2e-26
 Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 1  MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
          MS Y DEIEIED  ++ +++ + YPCPCGDRFQI  + +  GE VA CP+CSL+I 
Sbjct: 1  MSTY-DEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMID 55

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 1e-25
 Identities = 45/285 (15%), Positives = 96/285 (33%), Gaps = 42/285 (14%)

Query: 103 NFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSY-------- 154
             +   +P +L      +  +L W      + EYL  + G+ +  V + +++        
Sbjct: 40  ELIENEEPVVLTDTNLVY-PALKW------DLEYLQENIGNGDFSVYSASTHKFLYYDEK 92

Query: 155 -------YFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRV 207
                  +     +  M   E+    Q   D +    E   YL+      D     I   
Sbjct: 93  KMANFQNFKPRSNREEMKFHEFVEKLQ---DIQQRGGEERLYLQQTLN--DTVGRKIVMD 147

Query: 208 PNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLL 267
              F+ +W+N+   +    +     + +G +   TP H D   +  +   I G K+ +L 
Sbjct: 148 FLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYDEQQN--FFAQIKGYKRCILF 205

Query: 268 APGNEKYFKDSMGNLISDMRSV---------DWSTLPRDTVIIVEQEAGDSIFVPSGWHH 318
            P   +       +   D +S           +               GD +++P  W H
Sbjct: 206 PPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWH 265

Query: 319 QVTNLEH---TISINHNWINGTNIDHVYHEMVSHL-EAVKKEIDD 359
            + +L +   TI++N  +        + + + +H   A+ + I+ 
Sbjct: 266 HIESLLNGGITITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEK 310

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

 Score = 77.7 bits (190), Expect = 2e-16
 Identities = 38/260 (14%), Positives = 69/260 (26%), Gaps = 31/260 (11%)

Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHE 160
              +    KP + +  V  + S   +   K    E +   Y +  + V +          
Sbjct: 15  LEEYWPV-KPLVARGEVERFTSIPGF--EKVRTLENVLAIYNNPVMVVGDAVIEESEGIT 71

Query: 161 KTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYY 220
              +      + W               Y K      DF    I +V          +  
Sbjct: 72  DRFLVSPAEALEW---------------YEKGAALEFDFTDLFIPQVRRWI---EKLKAE 113

Query: 221 SEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYF----- 275
                       VY          H D + +      I G K W L    N         
Sbjct: 114 LRLPAGTSSKAIVYAAKNGGGFKAHFDAYTN--LIFQIQGEKTWKLAKNENVSNPMQHYD 171

Query: 276 KDSMGNLISDMRSVDWSTLPR---DTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN 332
                    D++S      P+       IV    G  +++P G  H   + + T+++N  
Sbjct: 172 LSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNIT 231

Query: 333 WINGTNIDHVYHEMVSHLEA 352
           +     +D +   +   L +
Sbjct: 232 FGQPAWLDLMLAALRKKLIS 251

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	100.0
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	99.97
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	99.9
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	99.86
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	97.18
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	96.85
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	96.8
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	96.69
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	96.66
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	96.5
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	96.22
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	96.11
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	96.09
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	95.87
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	95.83
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	95.8
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	95.77
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	95.76
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	95.71
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	95.69
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	95.64
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	94.98
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	94.91
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	94.86
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	94.81
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	94.74
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	94.42
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	94.28
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	94.18
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	94.04
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	93.8
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	93.79
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	93.73
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	93.15
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	92.93
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	92.6
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	92.53
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	92.25
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	91.95
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	91.88
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	91.53
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	91.03
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	91.01
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	90.8
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	90.22
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	90.0
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	89.89
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	89.74
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	88.68
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	88.32
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	85.49
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	85.36
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	84.82
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	84.2
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	83.49
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	83.36
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	83.27
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	81.74

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-37  Score=307.47  Aligned_cols=234  Identities=17%  Similarity=0.250  Sum_probs=173.8

Q ss_pred             CCceeeCCCCCHHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCccc--c-------
Q psy12281         86 QVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYY--F-------  156 (456)
Q Consensus        86 ~~I~ri~~~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~~~--y-------  156 (456)
                      ..|+|++ ..+.  +.++|+.+++||||+|++.+|||. +|+      ++||++++|+..|+|.......  |       
T Consensus        26 ~~vpr~~-~~~~--~~e~y~~~~~PvVi~g~~~~Wpa~-kWt------~dyL~~~~Gd~~V~v~~~~~~~~~~~~~~~~~   95 (335)
T d1h2ka_          26 RPIPRLS-QSDP--RAEELIENEEPVVLTDTNLVYPAL-KWD------LEYLQENIGNGDFSVYSASTHKFLYYDEKKMA   95 (335)
T ss_dssp             EECCEEC-TTCH--HHHHHHHTTCCEEESCCCTTGGGG-GCC------HHHHHHHSCSCCEEEEEESSSBCCCCCGGGGG
T ss_pred             cccCccC-CCCc--CHHHHhcCCCCEEEeCCCCCCCcc-cCC------HHHHHHhhCCceEEEEEecCcccccccccccc
Confidence            5688885 3333  457899999999999999999998 595      7999999999999987543211  1       


Q ss_pred             -----c-CCceEEeeHHHHHHHHHhcccCCCCCCCCeeeeeccccccCCCCC-cccccCcccCcchhhHhhhhhccCCCc
Q psy12281        157 -----N-AHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTE-DIYRVPNVFSSDWLNEYYSEHLEHKDD  229 (456)
Q Consensus       157 -----~-~~~~~~m~l~efl~~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l-~~y~~P~~f~~D~ln~~~~~~~~~~~~  229 (456)
                           . ......|++++|++++.....   ......+|+.+.......+.+ .++..|.+   ++.+............
T Consensus        96 ~~~~~~~~~~~~~~~~~ef~~~~~~~~~---~~~~~~~yl~~~~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~  169 (335)
T d1h2ka_          96 NFQNFKPRSNREEMKFHEFVEKLQDIQQ---RGGEERLYLQQTLNDTVGRKIVMDFLGFNW---NWINKQQGKRGWGQLT  169 (335)
T ss_dssp             GGTTCCCSEEEEEECHHHHHHHHHHHHH---TTCCCEEEEEEECCTTSCHHHHHHHHTSCH---HHHHHHHHHHTCCCEE
T ss_pred             cccccccccchhcccHHHHHHHHHhccc---cCCCcceEhhhccccccChhhhcccccCcc---cccchhhccccccCCc
Confidence                 1 123578999999999876543   123567888876544333332 23333332   2222222111112345


Q ss_pred             cceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCC------ccccCCCcccCCCCC---CceE
Q psy12281        230 YRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGN------LISDMRSVDWSTLPR---DTVI  300 (456)
Q Consensus       230 ~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~------~p~d~~~pd~~~fp~---~~~~  300 (456)
                      ..++|||++|+.|++|+|+++++  ++||.|+|+|+||||.+...+|+....      ..+|+.++++.++|.   ++++
T Consensus       170 ~~~lwiG~~gs~t~~H~D~~~~~--~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~  247 (335)
T d1h2ka_         170 SNLLLIGMEGNVTPAHYDEQQNF--FAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGY  247 (335)
T ss_dssp             ECEEEEECTTCEEEEECCSEEEE--EEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEE
T ss_pred             ceEEEEcCCCCCCccccccccce--EEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCce
Confidence            57899999999999999999766  999999999999999999988875422      247788888888764   8999


Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCC---cEEEEeecCCCC
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEH---TISINHNWINGT  337 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~---sIsvn~~~~~~~  337 (456)
                      +|+|+|||+||||+||||+|+|+++   |||||+||.+..
T Consensus       248 ~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~w~~~~~  287 (335)
T d1h2ka_         248 ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAP  287 (335)
T ss_dssp             EEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEECCC
T ss_pred             EEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEeeecCCC
Confidence            9999999999999999999999976   899999887653

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=2.6e-30  Score=254.46  Aligned_cols=232  Identities=14%  Similarity=0.175  Sum_probs=152.8

Q ss_pred             CCCCHHHHHHhhcCCCCcEEEecCCCccccccccccCCCCChhHHHHHhCCceEEEEecCccccc-CCceEEeeHHHHHH
Q psy12281         93 PSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFN-AHEKTNMTLKEYTI  171 (456)
Q Consensus        93 ~~ls~~~F~~~y~~~~~PvVi~g~~~~Wpa~~~Wt~~~~~~~d~L~~~~Gd~~V~V~~~~~~~y~-~~~~~~m~l~efl~  171 (456)
                      +.+|+++|+++|+ .++||||+|++++|++...|..  ...++.+.+..+...+...+....... .......+..++.+
T Consensus         7 spis~eeF~~~y~-~kkPvvir~~~~~~~a~~~w~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (319)
T d1vrba1           7 SPVTMSEFLEEYW-PVKPLVARGEVERFTSIPGFEK--VRTLENVLAIYNNPVMVVGDAVIEESEGITDRFLVSPAEALE   83 (319)
T ss_dssp             TTSCHHHHHHHTT-TTSCEEECCCGGGGGGSTTCGG--GSSHHHHHHHCCSCEEEC-------------CEEECHHHHHH
T ss_pred             CCCCHHHHHHHcC-CCCCEEEcCCcccCccccCCcc--HHHHHHccCccccceEEccCCceeccCCcccccccchHHHHH
Confidence            3689999999998 5699999999999999999963  011233333444444433322211111 11234556677777


Q ss_pred             HHHhcccCCCCCCCCeeeeeccccccCCCCCcccccCcccCcchhhHhhhhh--ccCCCccceeeeCCCCCccccccccc
Q psy12281        172 YWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEH--LEHKDDYRFVYMGPKETWTPLHADVF  249 (456)
Q Consensus       172 ~~~~~~~~~~~~~~~~~Yl~d~~~~~~~p~l~~y~~P~~f~~D~ln~~~~~~--~~~~~~~~~l~iG~~gs~T~lH~D~~  249 (456)
                      ++....         .+.+...  ....+.+.          +++..+....  ...+.....+|+|++|+++++|+|.+
T Consensus        84 ~~~~~~---------~~~~~~~--~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~H~D~~  142 (319)
T d1vrba1          84 WYEKGA---------ALEFDFT--DLFIPQVR----------RWIEKLKAELRLPAGTSSKAIVYAAKNGGGFKAHFDAY  142 (319)
T ss_dssp             HHHTTC---------CEEECCG--GGTCTHHH----------HHHHHHHHHTTCCTTCCEEEEEEEECSSCCCCSEECSS
T ss_pred             HHhcCC---------EEEEech--hhcChHHH----------HHHhhhHHhhcCcccccceeEEEecCCCCCCccccCCC
Confidence            665321         1222111  11111110          1111111100  00134456789999999999999998


Q ss_pred             CccceeEEEEeEEEEEEeCCCCCcccccCCCC-----ccccCCCcccCCCCC---CceEEEEEcCCCEEEeCCCCeEEEE
Q psy12281        250 HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGN-----LISDMRSVDWSTLPR---DTVIIVEQEAGDSIFVPSGWHHQVT  321 (456)
Q Consensus       250 ~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~-----~p~d~~~pd~~~fp~---~~~~~~~l~pGD~LfIPsgW~H~V~  321 (456)
                      +++  ++||.|+|+|+|+||.+...+|+..+.     .+.++..++..+||.   +++++|+|+|||+||||+||||+|+
T Consensus       143 d~f--~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGDvLYiP~gw~H~v~  220 (319)
T d1vrba1         143 TNL--IFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTK  220 (319)
T ss_dssp             EEE--EEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCEEEECTTCEEEEE
T ss_pred             cee--EEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCCEEEeCCCceEEeE
Confidence            866  999999999999999999888864321     234555566666653   7899999999999999999999999


Q ss_pred             eCCCcEEEEeecCCCCCHHHHHHHHHHHH
Q psy12281        322 NLEHTISINHNWINGTNIDHVYHEMVSHL  350 (456)
Q Consensus       322 nl~~sIsvn~~~~~~~nl~~~~~~l~~~~  350 (456)
                      |+++|||||.+|...+..+.+...+...+
T Consensus       221 s~~~sis~sv~f~~~~~~d~~~~~~~~~~  249 (319)
T d1vrba1         221 SDQATLALNITFGQPAWLDLMLAALRKKL  249 (319)
T ss_dssp             CSSCEEEEEEEECCCBHHHHHHHHHHHHH
T ss_pred             ecCCeEEEEEEecCCCHHHHHHHHHHHHH
Confidence            99999999999999988887766665443

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.8e-24  Score=162.90  Aligned_cols=63  Identities=71%  Similarity=1.300  Sum_probs=60.1

Q ss_pred             CceeeeEEeCCCccccCCCceEEEecCCCCcEEeehhhhhcCCcEEeCCCCcceEEEeeeehh
Q psy12281          1 MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSV   63 (456)
Q Consensus         1 ~~~~~~~~~l~d~~~~~~~~~~~~~CrCg~~f~i~~~~l~~~~~~~~C~~CSl~i~~~~~~~~   63 (456)
                      |+++||+|+|+||+|++++++|+|||||||.|.||+++|++|+.+++|+||||||||.|+..+
T Consensus         1 m~~~~dev~leD~~~dee~~~~~ypCpCGd~F~it~~dLe~ge~V~~C~sCSL~ikVif~~e~   63 (70)
T d1wgea1           1 MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIKVIYDKDQ   63 (70)
T ss_dssp             CCCCSCEEEGGGSCCBTTTTEEEECCSSSSCEEEEHHHHHTTCCEEECTTTCCEEEEECCHHH
T ss_pred             CCceEEEEEeeeeeEeCCCCEEEeCCCCCCeEEECHHHHhCCCeEEeCCCCceEEEEEEChHH
Confidence            889999999999999999999999999999999999999999999999999999999996443

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=7.2e-23  Score=158.76  Aligned_cols=64  Identities=45%  Similarity=0.892  Sum_probs=59.3

Q ss_pred             eeeeEEeCCCccccCCCceEEEecCCCCcEEeehhhhhcCCcEEeCCCCcceEEEeeeehhhhh
Q psy12281          3 VYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLM   66 (456)
Q Consensus         3 ~~~~~~~l~d~~~~~~~~~~~~~CrCg~~f~i~~~~l~~~~~~~~C~~CSl~i~~~~~~~~~~~   66 (456)
                      .+||+|+|+||+|++++++|+|||||||.|.|++++|++|+.+++|+||||||||.|+..+-..
T Consensus         2 s~ydev~LeDm~~ded~~~~~ypCrCGd~F~it~~dLe~ge~v~~C~sCSL~IrVif~~ed~~~   65 (82)
T d1ywsa1           2 STYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVFDKEDLAE   65 (82)
T ss_dssp             CCCCEEETTTSEEETTTTEEEECCSSSSCEEEEHHHHHTTCCEEEETTTTEEEEEECCHHHHHH
T ss_pred             ccccEEEecceEEeCCCCEEEeccccCCeEEEcHHHHhCCCeEEeCCCCceEEEEEechhHhhh
Confidence            3689999999999999999999999999999999999999999999999999999997665443

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.18  E-value=0.00037  Score=59.91  Aligned_cols=65  Identities=15%  Similarity=0.111  Sum_probs=49.7

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|..+++|.....-  +..++.|+=.+++.......                      ..+..++.++|||+++||+|.
T Consensus        49 ~PG~~~~~H~H~~~e--~~~Vl~G~g~~~i~~~~~~~----------------------~~~~~~~~l~~Gd~~~iP~~~  104 (160)
T d1lr5a_          49 SPGQRTPIHRHSCEE--VFTVLKGKGTLLMGSSSLKY----------------------PGQPQEIPFFQNTTFSIPVND  104 (160)
T ss_dssp             CTTCBCCEEEESSCE--EEEEEECCEEEEECCSSSSS----------------------CCSCEEEEECTTEEEEECTTC
T ss_pred             CCCccccceeccccE--EEEEEeeeEEEEECCccccc----------------------cccceEEEecCCCEEEeCCCC
Confidence            456679999765544  48999999998885433211                      134567999999999999999


Q ss_pred             eEEEEeCCC
Q psy12281        317 HHQVTNLEH  325 (456)
Q Consensus       317 ~H~V~nl~~  325 (456)
                      +|++.|.++
T Consensus       105 ~H~~~N~g~  113 (160)
T d1lr5a_         105 PHQVWNSDE  113 (160)
T ss_dssp             CEEEECCCS
T ss_pred             cEEEEECCC
Confidence            999999875

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=96.85  E-value=0.003  Score=54.84  Aligned_cols=68  Identities=13%  Similarity=0.125  Sum_probs=54.3

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-|.| |+...+|+.+..+ .|..++.|+=++.++.|..                         .+.++-.+++||+++|
T Consensus        47 ~~l~p-ga~~~PH~H~~A~-ei~yV~~G~~~v~~v~~~g-------------------------~~~~~~~l~~Gdv~vv   99 (174)
T d1fxza2          47 GSLRK-NAMFVPHYNLNAN-SIIYALNGRALIQVVNCNG-------------------------ERVFDGELQEGRVLIV   99 (174)
T ss_dssp             EEECT-TCEEEEEEETTCC-EEEEEEESEEEEEEECTTS-------------------------CEEEEEEEETTCEEEE
T ss_pred             eeecC-CCEeCCccCCCCC-EEEEEEecceEEEEecCCC-------------------------ceeEEEEEcCCcEEEE
Confidence            45665 5568889877654 6899999999999986642                         2456678999999999


Q ss_pred             CCCCeEEEEeCCCcE
Q psy12281        313 PSGWHHQVTNLEHTI  327 (456)
Q Consensus       313 PsgW~H~V~nl~~sI  327 (456)
                      |.|+.|...|.++..
T Consensus       100 P~G~~h~~~n~~~~~  114 (174)
T d1fxza2         100 PQNFVVAARSQSDNF  114 (174)
T ss_dssp             CTTCEEEEEECSTTE
T ss_pred             CCCCEEEEEeCCCCe
Confidence            999999999988743

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.80  E-value=0.0019  Score=56.92  Aligned_cols=67  Identities=21%  Similarity=0.295  Sum_probs=46.2

Q ss_pred             ccccccccC-ccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEE
Q psy12281        242 TPLHADVFH-SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQV  320 (456)
Q Consensus       242 T~lH~D~~~-~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V  320 (456)
                      |.-|+.... ..-+..++.|+=.++|-.+.                          .....+.++|||++|||+||+|++
T Consensus        86 t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~--------------------------~~~~~~~v~~Gd~v~iP~g~~H~~  139 (190)
T d1x82a_          86 TKGHFHAKLDRAEVYVALKGKGGMLLQTPE--------------------------GDAKWISMEPGTVVYVPPYWAHRT  139 (190)
T ss_dssp             CCCBBCSSTTCCEEEEEEESCEEEEEECTT--------------------------CCEEEEEECTTCEEEECTTCEEEE
T ss_pred             ccceECCCCCCeEEEEEEEeEEEEEEeecc--------------------------CceEEEEecCCcEEEEecceeEEe
Confidence            344554422 12347899999888885332                          134568899999999999999999


Q ss_pred             EeCCC-cEEEEeecC
Q psy12281        321 TNLEH-TISINHNWI  334 (456)
Q Consensus       321 ~nl~~-sIsvn~~~~  334 (456)
                      .|.++ .+.+-.+|.
T Consensus       140 ~N~Gde~L~~l~v~~  154 (190)
T d1x82a_         140 VNIGDEPFIFLAIYP  154 (190)
T ss_dssp             EECSSSCEEEEEEEE
T ss_pred             EECCCCCEEEEEEEC
Confidence            99988 344333343

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=96.69  E-value=0.0067  Score=52.48  Aligned_cols=68  Identities=15%  Similarity=0.069  Sum_probs=52.8

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-|-| |+...+|+.+.. ..|..++.|+=+..++.|+.                         .+.++..+++||+++|
T Consensus        52 v~L~p-ga~~~PH~H~~A-~ei~yV~~G~~~v~~v~~~~-------------------------~~~~~~~l~~Gdv~~i  104 (173)
T d1od5a2          52 VVLYR-NGIYSPHWNLNA-NSVIYVTRGKGRVRVVNCQG-------------------------NAVFDGELRRGQLLVV  104 (173)
T ss_dssp             EEECT-TCEEEEEEESSC-CEEEEEEEEEEEEEEECTTS-------------------------CEEEEEEEETTCEEEE
T ss_pred             EEEcC-CcEecCccCCCC-cEEEEEEecceEEEEEeCCC-------------------------ceEEeEEecCCcEEEE
Confidence            45555 455777886654 36789999999999987653                         2456778999999999


Q ss_pred             CCCCeEEEEeCCCcE
Q psy12281        313 PSGWHHQVTNLEHTI  327 (456)
Q Consensus       313 PsgW~H~V~nl~~sI  327 (456)
                      |.|+.|...|.++..
T Consensus       105 P~G~~h~~~n~~~~~  119 (173)
T d1od5a2         105 PQNFVVAEQGGEQGL  119 (173)
T ss_dssp             CTTCEEEEEEEEEEE
T ss_pred             CCCCEEEEEcCCCce
Confidence            999999999977743

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=96.50  E-value=0.0043  Score=53.16  Aligned_cols=73  Identities=14%  Similarity=0.052  Sum_probs=54.0

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +=|-| |+...+|+.+.. ..|..+++|+=+..++.|.......                   ..+.++-.+++||+++|
T Consensus        25 ~~l~p-~~~~~PH~h~~A-~~i~~V~~G~g~v~~v~~~g~~~~~-------------------~~~~~~~~l~~Gdv~vv   83 (162)
T d2phla2          25 IEMEE-GALFVPHYYSKA-IVILVVNEGEAHVELVGPKGNKETL-------------------EYESYRAELSKDDVFVI   83 (162)
T ss_dssp             EEECT-TEEEEEEEESSC-EEEEEEEESEEEEEEEEECC--CCS-------------------CEEEEEEEEETTCEEEE
T ss_pred             EEECC-CcEeCCccCCCC-CEEEEEEEeeeEEEEEecCCccccc-------------------cceeeEeeecCCcEEEE
Confidence            34455 555777876543 3679999999999999776432111                   13567789999999999


Q ss_pred             CCCCeEEEEeCCCc
Q psy12281        313 PSGWHHQVTNLEHT  326 (456)
Q Consensus       313 PsgW~H~V~nl~~s  326 (456)
                      |+|+.|...|.++.
T Consensus        84 P~G~~~~~~n~~~~   97 (162)
T d2phla2          84 PAAYPVAIKATSNV   97 (162)
T ss_dssp             CTTCCEEEEESSSE
T ss_pred             CCCCEEEEEeCCCc
Confidence            99999999998874

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.22  E-value=0.0063  Score=48.28  Aligned_cols=64  Identities=16%  Similarity=0.170  Sum_probs=47.9

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +.+.| |+.++.|+...+.  |..++.|+-.+.+   +.         .                .  ...++|||++++
T Consensus        31 ~~l~p-G~~~p~H~H~~~e--~~~Vl~G~~~~~v---~~---------~----------------e--~~~v~~Gd~i~i   77 (108)
T d2b8ma1          31 IVLPR-GEQMPKHYSNSYV--HLIIIKGEMTLTL---ED---------Q----------------E--PHNYKEGNIVYV   77 (108)
T ss_dssp             EEEET-TCBCCCEECSSCE--EEEEEESEEEEEE---TT---------S----------------C--CEEEETTCEEEE
T ss_pred             EEECC-CCcChhhcccccE--EEEEEeeeEEEEE---ec---------c----------------c--EEEeecceEeec
Confidence            44444 6679999987554  4789999988877   11         0                0  256899999999


Q ss_pred             CCCCeEEEEeCCCcEEE
Q psy12281        313 PSGWHHQVTNLEHTISI  329 (456)
Q Consensus       313 PsgW~H~V~nl~~sIsv  329 (456)
                      |+|=.|++.|.++....
T Consensus        78 p~~~~H~~~n~~~e~l~   94 (108)
T d2b8ma1          78 PFNVKMLIQNINSDILE   94 (108)
T ss_dssp             CTTCEEEEECCSSSEEE
T ss_pred             cCCceEEEEcCCCCcEE
Confidence            99999999999885433

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=96.11  E-value=0.0041  Score=53.72  Aligned_cols=63  Identities=16%  Similarity=0.118  Sum_probs=47.6

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-|.|.+. ...|+  .++..+..++.|+=+..++-|+.                           ..+..+++||+++|
T Consensus        49 ~~i~p~~~-~~Ph~--~~a~ei~yV~~G~g~v~~v~~~~---------------------------~~~~~l~~GDv~~v   98 (170)
T d1uija1          49 FQSKPNTI-LLPHH--ADADFLLFVLSGRAILTLVNNDD---------------------------RDSYNLHPGDAQRI   98 (170)
T ss_dssp             EEECTTEE-EEEEE--ESEEEEEEEEESCEEEEEECSSC---------------------------EEEEEECTTEEEEE
T ss_pred             EEecCCcc-ccccc--CCCCEEEEEEEEEEEEEEEeCCC---------------------------cEEEEecCCcEEEE
Confidence            34666544 55553  23445689999999999987753                           22567999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |+|+.|.+.|.++
T Consensus        99 P~G~~h~~~n~~~  111 (170)
T d1uija1          99 PAGTTYYLVNPHD  111 (170)
T ss_dssp             CTTCEEEEEECCS
T ss_pred             CCCCeEEEEEcCC
Confidence            9999999999876

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.09  E-value=0.0049  Score=59.83  Aligned_cols=65  Identities=25%  Similarity=0.371  Sum_probs=51.2

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-|-| |....+|+.+... -|...+.|+=++.++.+..                          +..+..++|||++||
T Consensus       255 ~~l~P-G~~~~~H~Hp~a~-E~~yvl~G~g~v~v~~~~g--------------------------~~~t~~l~~GDv~~i  306 (372)
T d1j58a_         255 VTVEP-GAMRELHWHPNTH-EWQYYISGKARMTVFASDG--------------------------HARTFNYQAGDVGYV  306 (372)
T ss_dssp             EEECT-TCEEEEEECSSSC-EEEEEEESEEEEEEEEETT--------------------------EEEEEEEESSCEEEE
T ss_pred             EEECC-CcccCCCCCCCCc-EEEEEEECeEEEEEEcCCC--------------------------ceEEEEecCCcEEEE
Confidence            34444 4558899986544 5789999999999876432                          345678999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |.|++|.+.|.++
T Consensus       307 P~g~~H~i~N~g~  319 (372)
T d1j58a_         307 PFAMGHYVENIGD  319 (372)
T ss_dssp             CTTCBEEEEECSS
T ss_pred             CCCCeEEEEECCC
Confidence            9999999999987

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=95.87  E-value=0.016  Score=51.28  Aligned_cols=70  Identities=20%  Similarity=0.227  Sum_probs=53.2

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      .+-|.|.|. .++|+.+..+ .+..++.|+=+..+.-+.+.                       ..+.+..++++||+++
T Consensus        76 rv~l~pgg~-~~PH~Hp~A~-Ei~yV~~G~~~v~~v~~~~~-----------------------~~~~~~~~l~~GDv~v  130 (201)
T d2et1a1          76 RVDFAPGGT-NPPHIHPRAT-EIGMVMKGELLVGILGSLDS-----------------------GNKLYSRVVRAGETFV  130 (201)
T ss_dssp             EEEECTTCE-EEEEECTTCC-EEEEEEESCEEEEEECCGGG-----------------------TTCEEEEEECTTCEEE
T ss_pred             EEEECCCCC-cCCcccCCCC-EEEEEEcceEEEEEEeccCC-----------------------CceeEEEEecCCCEEE
Confidence            467777555 7789987643 24789999988877644221                       1356788999999999


Q ss_pred             eCCCCeEEEEeCCCc
Q psy12281        312 VPSGWHHQVTNLEHT  326 (456)
Q Consensus       312 IPsgW~H~V~nl~~s  326 (456)
                      ||.|+.|...|.++.
T Consensus       131 vP~G~~H~~~N~g~~  145 (201)
T d2et1a1         131 IPRGLMHFQFNVGKT  145 (201)
T ss_dssp             ECTTCCEEEEECSSS
T ss_pred             ECCCCeEEEEEcCCC
Confidence            999999999999884

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=95.83  E-value=0.0055  Score=53.25  Aligned_cols=61  Identities=18%  Similarity=0.195  Sum_probs=46.4

Q ss_pred             eCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCC
Q psy12281        235 MGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPS  314 (456)
Q Consensus       235 iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPs  314 (456)
                      |-|.+- ...|+  .++..|..++.|+=+..+..|+.                           ..+..+++||+++||+
T Consensus        48 i~p~~l-~~Ph~--~~a~ev~yV~~G~g~v~~v~~~~---------------------------~~~~~l~~GDv~~iP~   97 (178)
T d1dgwa_          48 SKPNTL-LLPHH--SDSDLLVLVLEGQAILVLVNPDG---------------------------RDTYKLDQGDAIKIQA   97 (178)
T ss_dssp             ECTTEE-EEEEE--ESSEEEEEEEESEEEEEEEETTE---------------------------EEEEEEETTEEEEECT
T ss_pred             ecCCcc-ccccc--CCCCEEEEEEEeEEEEEEecCCc---------------------------eEEEEecCCCEEEECC
Confidence            455555 44553  23446789999999999987753                           2356799999999999


Q ss_pred             CCeEEEEeCCC
Q psy12281        315 GWHHQVTNLEH  325 (456)
Q Consensus       315 gW~H~V~nl~~  325 (456)
                      |..|.+.|.++
T Consensus        98 G~~h~~~N~~~  108 (178)
T d1dgwa_          98 GTPFYLINPDN  108 (178)
T ss_dssp             TCCEEEEECCS
T ss_pred             CCeEEEEECCC
Confidence            99999999866

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=95.80  E-value=0.015  Score=50.68  Aligned_cols=80  Identities=14%  Similarity=0.025  Sum_probs=53.0

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-|-+ ++...+|+.+.. ..|..++.|+=++.++.|+....-... +           ..-...+.+...+++||+++|
T Consensus        47 ~~l~p-~~~~~Ph~h~~A-~~i~~V~~G~g~v~~v~~~~~~~~~~~-~-----------~~~~~~~~~~~~l~~GDv~vi  112 (185)
T d1uika2          47 VDMNE-GALFLPHFNSKA-IVVLVINEGEANIELVGIKEQQQRQQQ-E-----------EQPLEVRKYRAELSEQDIFVI  112 (185)
T ss_dssp             EEECT-TEEEEEEEESSC-EEEEEEEESCEEEEEEEC------------------------CBCCEEEEEEECTTCEEEE
T ss_pred             eecCC-CceeeeeecCCC-CEEEEEEeeEEEEEEEccCccchhhcc-c-----------cccCcceeEEEEecCCcEEEE
Confidence            34455 445666885443 357899999999999988654321100 0           000125777889999999999


Q ss_pred             CCCCeEEEEeCCCc
Q psy12281        313 PSGWHHQVTNLEHT  326 (456)
Q Consensus       313 PsgW~H~V~nl~~s  326 (456)
                      |+|++|...|.++.
T Consensus       113 P~G~~~~~~n~~d~  126 (185)
T d1uika2         113 PAGYPVVVNATSDL  126 (185)
T ss_dssp             CTTCCEEEEESSSE
T ss_pred             CCCCEEEEEcCCCc
Confidence            99999999998884

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.008  Score=48.05  Aligned_cols=57  Identities=25%  Similarity=0.202  Sum_probs=43.1

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|+.+++|+..... -+...+.|+=+..+            .|                   -+..++|||++++|+|-
T Consensus        47 ~PG~~~~~H~H~~~~-E~~~vl~G~~~~~~------------~~-------------------~~~~l~~Gd~~~ip~g~   94 (115)
T d1o4ta_          47 PPGSSVGLHKHEGEF-EIYYILLGEGVFHD------------NG-------------------KDVPIKAGDVCFTDSGE   94 (115)
T ss_dssp             CTTCEEEEEECCSEE-EEEEEEESEEEEEE------------TT-------------------EEEEEETTEEEEECTTC
T ss_pred             CCCCCcCCEECCCCc-EEEEEEECcceEEE------------cC-------------------eeEEeeccEEEEECCCC
Confidence            446679999975432 23778999876665            01                   14688999999999999


Q ss_pred             eEEEEeCCC
Q psy12281        317 HHQVTNLEH  325 (456)
Q Consensus       317 ~H~V~nl~~  325 (456)
                      +|+..|.++
T Consensus        95 ~H~~~N~g~  103 (115)
T d1o4ta_          95 SHSIENTGN  103 (115)
T ss_dssp             EEEEECCSS
T ss_pred             eEEEEECCC
Confidence            999999877

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=95.76  E-value=0.0077  Score=53.44  Aligned_cols=63  Identities=22%  Similarity=0.255  Sum_probs=47.3

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-|-|.+-..|-|.   ++..+..++.|+=+..+..|+..                           .+..+++||+++|
T Consensus        45 ~~i~p~~l~~Ph~~---~a~ev~yV~~G~g~~~~v~~~~~---------------------------~~~~l~~GDv~~i   94 (203)
T d1uika1          45 FNSKPNTLLLPHHA---DADYLIVILNGTAILTLVNNDDR---------------------------DSYNLQSGDALRV   94 (203)
T ss_dssp             EEECSSEEEEEEEE---SEEEEEEEEESEEEEEEECSSCE---------------------------EEEEEETTEEEEE
T ss_pred             EEecCCCccccccC---CCcEEEEEEEEEEEEEEEeCCCe---------------------------EEEEecCCCEEEE
Confidence            33555444444443   34456899999999999877642                           2567999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |+|+.|.+.|.++
T Consensus        95 P~G~~~~~~N~~~  107 (203)
T d1uika1          95 PAGTTYYVVNPDN  107 (203)
T ss_dssp             CTTCEEEEEECCS
T ss_pred             CCCCeEEEEECCC
Confidence            9999999999887

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=95.71  E-value=0.0075  Score=58.51  Aligned_cols=64  Identities=23%  Similarity=0.390  Sum_probs=50.1

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-+.| |+...+|+....  .|..++.|+=+..++.+.-                          +.+...+++||+++|
T Consensus        77 ~~L~p-ga~~~pH~H~~a--e~~yVl~G~~~vt~Vd~~G--------------------------~~~~~~l~~GDv~~~  127 (372)
T d1j58a_          77 MRLKP-GAIRELHWHKEA--EWAYMIYGSARVTIVDEKG--------------------------RSFIDDVGEGDLWYF  127 (372)
T ss_dssp             EEECT-TCEEEEEEESSC--EEEEEEEEEEEEEEECTTS--------------------------CEEEEEEETTEEEEE
T ss_pred             EEECC-CcCcCCcccCcc--cEEEEEeCEEEEEEEeCCC--------------------------cEEEEEeccCCEEEE
Confidence            44555 455888887654  5899999999999886542                          233457999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |+|++|...|+++
T Consensus       128 P~G~~H~i~n~~d  140 (372)
T d1j58a_         128 PSGLPHSIQALEE  140 (372)
T ss_dssp             CTTCCEEEEEEEE
T ss_pred             CCCCEEEEEeCCC
Confidence            9999999999877

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=95.69  E-value=0.012  Score=45.76  Aligned_cols=60  Identities=18%  Similarity=0.111  Sum_probs=44.2

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +.+.| |..+++|...... -|..++.|+=.+.+   +                            .-+..++|||++++
T Consensus        33 ~~~~P-G~~~~~H~H~~~~-e~~~vl~G~~~~~~---~----------------------------~~~~~l~~Gd~~~~   79 (105)
T d1v70a_          33 YALLP-GQAQKVHVHEGSD-KVYYALEGEVVVRV---G----------------------------EEEALLAPGMAAFA   79 (105)
T ss_dssp             EEECT-TCEEEEECCSSCE-EEEEEEESCEEEEE---T----------------------------TEEEEECTTCEEEE
T ss_pred             EEECC-CCCCcceECCCCe-EEEEEEeeEEEEEE---e----------------------------eeEEEecceEEEEe
Confidence            34555 5569999866532 23678999866654   0                            11578999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |+|=+|++.|.++
T Consensus        80 p~~~~H~~~n~g~   92 (105)
T d1v70a_          80 PAGAPHGVRNESA   92 (105)
T ss_dssp             CTTSCEEEECCSS
T ss_pred             CCCCEEEeEECCC
Confidence            9999999999976

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.029  Score=47.79  Aligned_cols=80  Identities=16%  Similarity=0.226  Sum_probs=66.1

Q ss_pred             CCccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC
Q psy12281        227 KDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA  306 (456)
Q Consensus       227 ~~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p  306 (456)
                      .+++.-..+|++.+.|.+|+|...-+  +.|+.|.=...++..++..                       .+...+.+++
T Consensus        31 ~~~~iVmvVGGPN~R~DyH~~~~eE~--FYQlkGdm~Lkv~~~~~~~-----------------------gk~~di~I~E   85 (175)
T d1zvfa1          31 KGGFTVMIVGGPNERTDYHINPTPEW--FYQKKGSMLLKVVDETDAE-----------------------PKFIDIIINE   85 (175)
T ss_dssp             CSSEEEEEECSSBCCSCEEECSSCEE--EEEEESCEEEEEEECSSSS-----------------------CEEEEEEECT
T ss_pred             cCCcEEEEEcCCCcccccccCcchhh--eeeecCcEEEEEEecCCCC-----------------------CceeEEeecC
Confidence            34677788999999999999999977  9999998777776544321                       3566899999


Q ss_pred             CCEEEeCCCCeEEEEeCCCcEEEEe
Q psy12281        307 GDSIFVPSGWHHQVTNLEHTISINH  331 (456)
Q Consensus       307 GD~LfIPsgW~H~V~nl~~sIsvn~  331 (456)
                      ||+.++|+.-.|.-.-..+||.+-.
T Consensus        86 Ge~fLLP~~vPHSPqR~~~tiGLVI  110 (175)
T d1zvfa1          86 GDSYLLPGNVPHSPVRFADTVGIVV  110 (175)
T ss_dssp             TEEEEECTTCCEEEEECTTCEEEEE
T ss_pred             CCEEEeCCCCCCCCCCCCCceEEEE
Confidence            9999999999999988888888764

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.98  E-value=0.046  Score=43.06  Aligned_cols=60  Identities=15%  Similarity=0.152  Sum_probs=46.5

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|...+.|......+  ..++.|+=.+.+   +                            .-+..+.+||+++||+|=
T Consensus        45 ~~G~~~~~H~h~~~~~--~~vl~G~~~~~~---~----------------------------~~~~~l~~Gd~~~ip~~~   91 (112)
T d1yhfa1          45 DKGQEIGRHSSPGDAM--VTILSGLAEITI---D----------------------------QETYRVAEGQTIVMPAGI   91 (112)
T ss_dssp             CTTCEEEEECCSSEEE--EEEEESEEEEEE---T----------------------------TEEEEEETTCEEEECTTS
T ss_pred             CCCCCcceEECCCCEE--EEEEeCEEEEEE---c----------------------------cEEEEecCCEEEEcCCCC
Confidence            4566688898876655  788899877766   1                            124788999999999999


Q ss_pred             eEEEEeCCCcEEE
Q psy12281        317 HHQVTNLEHTISI  329 (456)
Q Consensus       317 ~H~V~nl~~sIsv  329 (456)
                      .|.+.|.+++..+
T Consensus        92 ~H~~~a~~~~~~l  104 (112)
T d1yhfa1          92 PHALYAVEAFQML  104 (112)
T ss_dssp             CEEEEESSCEEEE
T ss_pred             eEEeEECCCcEEE
Confidence            9999999985443

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=94.91  E-value=0.082  Score=45.76  Aligned_cols=76  Identities=14%  Similarity=0.102  Sum_probs=55.6

Q ss_pred             CCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCC
Q psy12281        236 GPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSG  315 (456)
Q Consensus       236 G~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsg  315 (456)
                      =++|..||.| |..++..|..++.|.=+-..|...+.....                   -...-+.++.+|++.+++..
T Consensus        73 W~pGq~tpiH-DH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~-------------------l~~~~~~~~~~g~v~~~~~~  132 (186)
T d3elna1          73 WGEGHGSSIH-DHTDSHCFLKLLQGNLKETLFDWPDKKSNE-------------------MIKKSERTLRENQCAYINDS  132 (186)
T ss_dssp             ECTTCBCCEE-CCTTCEEEEEEEESCEEEEEECCCCSSCCC-------------------CCEEEEEEECTTCEEEECTT
T ss_pred             ccCCCcCCCc-cCCCCcEEEEEcccceEEEEeecCCCCccc-------------------ccccceEEecCCCEEEeCCC
Confidence            3678889999 777778899999999888888643321100                   13455789999999999876


Q ss_pred             C-eEEEEeCCC---cEEEEe
Q psy12281        316 W-HHQVTNLEH---TISINH  331 (456)
Q Consensus       316 W-~H~V~nl~~---sIsvn~  331 (456)
                      . .|+|.|.++   +||+..
T Consensus       133 ~~iH~v~N~~~~~~avsLHv  152 (186)
T d3elna1         133 IGLHRVENVSHTEPAVSLHL  152 (186)
T ss_dssp             TCEEEEECCCSSCCEEEEEE
T ss_pred             CCcceeecCCCCCCeEEEEE
Confidence            6 999999863   566543

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=94.86  E-value=0.022  Score=54.63  Aligned_cols=64  Identities=20%  Similarity=0.310  Sum_probs=48.8

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      ..|.| |..++.|.....  ++..+|.|+-.++...                              .-++.+++||++++
T Consensus        92 ~~l~P-Ge~~~~H~H~~~--~~~~vi~G~g~~t~v~------------------------------g~~~~~~~GD~~~~  138 (351)
T d2phda1          92 QYLGP-RETAPEHRHSQN--AFRFVVEGEGVWTVVN------------------------------GDPVRMSRGDLLLT  138 (351)
T ss_dssp             EEECT-TCEEEEEEESSC--EEEEEEECEEEEEEET------------------------------TEEEEEETTCEEEE
T ss_pred             EEECC-CCcCCccccccc--eeEEEEECCcEEEEEC------------------------------CEEEEEeCCCEEEe
Confidence            34555 455999998755  4588999987777642                              12478999999999


Q ss_pred             CCCCeEEEEeCCCcEEE
Q psy12281        313 PSGWHHQVTNLEHTISI  329 (456)
Q Consensus       313 PsgW~H~V~nl~~sIsv  329 (456)
                      |+|.||...|.++.-++
T Consensus       139 P~~~~H~~~n~~d~~~~  155 (351)
T d2phda1         139 PGWCFHGHMNDTDQPMA  155 (351)
T ss_dssp             CTTCCEEEEECSSSCEE
T ss_pred             CCCceEEEEEcCCCCEE
Confidence            99999999999874333

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=94.81  E-value=0.027  Score=46.41  Aligned_cols=61  Identities=16%  Similarity=0.118  Sum_probs=45.6

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +-+.| |..+++|..+...+  ..++.|+=...+            .|.                  -...++|||++||
T Consensus        40 vtf~P-G~~~~~H~H~~~q~--~~Vl~G~~~~~~------------~g~------------------~~~~~~~Gd~v~i   86 (134)
T d2f4pa1          40 VVFEP-GARTHWHSHPGGQI--LIVTRGKGFYQE------------RGK------------------PARILKKGDVVEI   86 (134)
T ss_dssp             EEECT-TCEECSEECTTCEE--EEEEEEEEEEEE------------TTS------------------CCEEEETTCEEEE
T ss_pred             EEECC-CCcCccccCCCCEE--EEEEeCEEEEEE------------CCc------------------ceEEEcCCCeEEE
Confidence            44555 55699999998877  889999844333            111                  0268999999999


Q ss_pred             CCCCeEEEEeCCCc
Q psy12281        313 PSGWHHQVTNLEHT  326 (456)
Q Consensus       313 PsgW~H~V~nl~~s  326 (456)
                      |+|..|...+.+++
T Consensus        87 ppg~~H~~~a~~~~  100 (134)
T d2f4pa1          87 PPNVVHWHGAAPDE  100 (134)
T ss_dssp             CTTCCEEEEEBTTB
T ss_pred             CCCCceECccCCCC
Confidence            99999998888773

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=94.74  E-value=0.015  Score=46.30  Aligned_cols=54  Identities=19%  Similarity=0.051  Sum_probs=41.9

Q ss_pred             CCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeE
Q psy12281        239 ETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHH  318 (456)
Q Consensus       239 gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H  318 (456)
                      |..++.|.....-.  ..++.|+-+..+   +         |                   -+..++|||++|+|+|=+|
T Consensus        46 G~~~~~H~H~~~e~--~~vl~G~~~~~~---~---------~-------------------~~~~l~~Gd~~~ip~~~~H   92 (114)
T d1vj2a_          46 GGLIDRHSHPWEHE--IFVLKGKLTVLK---E---------Q-------------------GEETVEEGFYIFVEPNEIH   92 (114)
T ss_dssp             EEEEEEECCSSCEE--EEEEESEEEEEC---S---------S-------------------CEEEEETTEEEEECTTCCE
T ss_pred             CCCCCceECCCcEE--EEEEEceeEEEE---e---------e-------------------eeeEEecCeEEEEcCCCeE
Confidence            55578888776544  678899866654   0         0                   1478999999999999999


Q ss_pred             EEEeCCC
Q psy12281        319 QVTNLEH  325 (456)
Q Consensus       319 ~V~nl~~  325 (456)
                      ++.|.++
T Consensus        93 ~~~n~~~   99 (114)
T d1vj2a_          93 GFRNDTD   99 (114)
T ss_dssp             EEECCSS
T ss_pred             EEEeCCC
Confidence            9999886

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=0.013  Score=55.05  Aligned_cols=60  Identities=17%  Similarity=0.168  Sum_probs=45.1

Q ss_pred             eeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeC
Q psy12281        234 YMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVP  313 (456)
Q Consensus       234 ~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIP  313 (456)
                      .+.| |..+++|......  +..+|.|+=++++..                              .-++.+++||++++|
T Consensus        60 ~l~P-G~~~~~H~H~~~e--~~~vl~G~g~~t~~~------------------------------~~~~~~~~Gd~~~~P  106 (308)
T d2d40a1          60 LIMP-GEVAPSHRHNQSA--LRFIVEGKGAFTAVD------------------------------GERTPMNEGDFILTP  106 (308)
T ss_dssp             EECT-TCEEEEEEESSCE--EEEEEECSSCEEEET------------------------------TEEEECCTTCEEEEC
T ss_pred             EECC-CCccccccCchhh--eEEEEEeeEEEEEec------------------------------CEEEEecCCCEEEeC
Confidence            4545 5569999987654  477888875555432                              125789999999999


Q ss_pred             CCCeEEEEeCCCc
Q psy12281        314 SGWHHQVTNLEHT  326 (456)
Q Consensus       314 sgW~H~V~nl~~s  326 (456)
                      +|.||+..|.++.
T Consensus       107 ~~~~H~~~n~g~e  119 (308)
T d2d40a1         107 QWRWHDHGNPGDE  119 (308)
T ss_dssp             TTSCEEEECCSSS
T ss_pred             CCceEEeEECCCC
Confidence            9999999999883

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.28  E-value=0.19  Score=43.85  Aligned_cols=82  Identities=11%  Similarity=0.018  Sum_probs=57.2

Q ss_pred             eeeeCCCCCccccccc--ccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--C
Q psy12281        232 FVYMGPKETWTPLHAD--VFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--G  307 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D--~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--G  307 (456)
                      ++-.+.+|+...+|+-  +....-+...|.|+=..+++.......-|                    .+...+.|.+  +
T Consensus        49 n~S~S~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tf--------------------gk~~~~~L~~~~~  108 (198)
T d2ixca1          49 NCSVSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTF--------------------GRWDSVLLDDQDR  108 (198)
T ss_dssp             EEEEECTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTT--------------------TCEEEEEEETTTC
T ss_pred             eeeeeehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccC--------------------CcEEEEEeecCCc
Confidence            3455678999999974  33333447788999888887554322111                    3456666765  5


Q ss_pred             CEEEeCCCCeEEEEeCCCcEEEEeec
Q psy12281        308 DSIFVPSGWHHQVTNLEHTISINHNW  333 (456)
Q Consensus       308 D~LfIPsgW~H~V~nl~~sIsvn~~~  333 (456)
                      -+||||+|.+|...+|++...|.+.-
T Consensus       109 ~~i~IP~G~aHGf~~L~~~~~i~Y~~  134 (198)
T d2ixca1         109 RTIYVSEGLAHGFLALQDNSTVMYLC  134 (198)
T ss_dssp             CEEEECTTCEEEEEECSSSEEEEEEE
T ss_pred             ceEEEcCCcEEEEEeecCcceeeccc
Confidence            59999999999999999966666643

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.058  Score=50.41  Aligned_cols=66  Identities=12%  Similarity=0.055  Sum_probs=49.6

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      +.+.++|..+..|......  ++.++.|+=+.++                               ...++.++|||+++|
T Consensus       226 ~~~l~pG~~~~~h~h~~~~--~~~v~~G~g~~~v-------------------------------~~~~~~~~~GD~~~v  272 (308)
T d2d40a1         226 LQLLPKGFASRVARTTDST--IYHVVEGSGQVII-------------------------------GNETFSFSAKDIFVV  272 (308)
T ss_dssp             EEEECTTCBCCCBEESSCE--EEEEEEEEEEEEE-------------------------------TTEEEEEETTCEEEE
T ss_pred             EEEccCCCccCCccCChhe--EEEEEeCcEEEEE-------------------------------CCEEEEEeCCCEEEe
Confidence            4456778889999886543  4788899755444                               012578999999999


Q ss_pred             CCCCeEEEEeCCCcEEEEe
Q psy12281        313 PSGWHHQVTNLEHTISINH  331 (456)
Q Consensus       313 PsgW~H~V~nl~~sIsvn~  331 (456)
                      |++.+|+..|.+++.-+..
T Consensus       273 P~~~~h~~~~~~d~~l~~v  291 (308)
T d2d40a1         273 PTWHGVSFQTTQDSVLFSF  291 (308)
T ss_dssp             CTTCCEEEEEEEEEEEEEE
T ss_pred             CCCCeEEEEcCCCeEEEEE
Confidence            9999999999888665544

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=94.04  E-value=0.12  Score=42.18  Aligned_cols=72  Identities=15%  Similarity=0.136  Sum_probs=50.6

Q ss_pred             ceeee--CCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCC
Q psy12281        231 RFVYM--GPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGD  308 (456)
Q Consensus       231 ~~l~i--G~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD  308 (456)
                      |..|+  -.+|+.-.+|+....+ -|..++.|+=+..+..+...                          .....-++++
T Consensus        32 r~~~~~~~~~g~iRG~H~Hk~~~-q~~~vi~G~i~~~~~d~~~~--------------------------~~~~l~~~~~   84 (135)
T d2pa7a1          32 RVYYIFDTKGEEPRGFHAHKKLE-QVLVCLNGSCRVILDDGNII--------------------------QEITLDSPAV   84 (135)
T ss_dssp             EEEEEESCCSSCCEEEEEESSCC-EEEEEEESCEEEEEECSSCE--------------------------EEEEECCTTE
T ss_pred             eEEEEecCCCCcEEeeecccccc-EEEEecccEEEEEEEecccc--------------------------ceeecccCCc
Confidence            44444  3567878899876544 47888999888777654321                          1123347889


Q ss_pred             EEEeCCCCeEEEEeCCC-cEEE
Q psy12281        309 SIFVPSGWHHQVTNLEH-TISI  329 (456)
Q Consensus       309 ~LfIPsgW~H~V~nl~~-sIsv  329 (456)
                      +||||+|+||...++++ ++-+
T Consensus        85 ~l~IPpg~~h~~~~l~~~s~ll  106 (135)
T d2pa7a1          85 GLYVGPAVWHEMHDFSSDCVMM  106 (135)
T ss_dssp             EEEECTTCEEEEECCCTTCEEE
T ss_pred             eeeeCCCEeeeEEecCCCcEEE
Confidence            99999999999999987 4433

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.80  E-value=0.2  Score=43.13  Aligned_cols=83  Identities=16%  Similarity=0.089  Sum_probs=56.8

Q ss_pred             eeeCCCCCccccccc--ccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--CC
Q psy12281        233 VYMGPKETWTPLHAD--VFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--GD  308 (456)
Q Consensus       233 l~iG~~gs~T~lH~D--~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--GD  308 (456)
                      +-...+|+...+|+-  +...-=+...+.|+=..+++.......                  .|  .+...+++.+  +.
T Consensus        51 ~S~s~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~------------------t~--g~~~~~~L~~~~~~  110 (183)
T d1dzra_          51 HSKSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESP------------------TF--GQWVGVNLSAENKR  110 (183)
T ss_dssp             EEEEETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCT------------------TT--TCEEEEEEETTTCC
T ss_pred             EeeeccceeEEEEecccccchhhheeeccccEEEEEEeccCCCC------------------CC--CcEEEEeecCCCce
Confidence            445568999999974  333334578899999988876543221                  11  2344555554  56


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEeecCC
Q psy12281        309 SIFVPSGWHHQVTNLEHTISINHNWIN  335 (456)
Q Consensus       309 ~LfIPsgW~H~V~nl~~sIsvn~~~~~  335 (456)
                      +||||+|.+|...++++...|.+..-+
T Consensus       111 ~l~IP~G~aHGf~~l~~~~~i~Y~~~~  137 (183)
T d1dzra_         111 QLWIPEGFAHGFVTLSEYAEFLYKATN  137 (183)
T ss_dssp             EEEECTTEEEEEEECSSEEEEEEEESS
T ss_pred             EEEEcCCeEEEEEEecCcceEEEeCCc
Confidence            999999999999999996666664433

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.79  E-value=0.15  Score=43.58  Aligned_cols=82  Identities=17%  Similarity=0.112  Sum_probs=55.6

Q ss_pred             eeCCCCCccccccccc--CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        234 YMGPKETWTPLHADVF--HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       234 ~iG~~gs~T~lH~D~~--~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      -...+|+.-.+|+...  ...-+..++.|+=..+++.......                  .|-+...+....+.+.+||
T Consensus        50 S~s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~------------------Tfgk~~~~~L~~~~~~~l~  111 (176)
T d1wlta1          50 SFSRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSP------------------TFGKYVKAELNEENHYMLW  111 (176)
T ss_dssp             EEECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTST------------------TTTCEEEEEEETTTCCEEE
T ss_pred             eeechheeeecccccccCCccEEEEEeccceEEEEEeeccCCC------------------ccceeeeEEeeccccceEE
Confidence            3457899999998832  3323477899999888876543211                  1222333444445677999


Q ss_pred             eCCCCeEEEEeCCCcEEEEeec
Q psy12281        312 VPSGWHHQVTNLEHTISINHNW  333 (456)
Q Consensus       312 IPsgW~H~V~nl~~sIsvn~~~  333 (456)
                      ||+|.+|...+++++..+.+..
T Consensus       112 IP~G~ahGf~~l~d~~~i~Y~~  133 (176)
T d1wlta1         112 IPPGFAHGFQALEDSIVIYFIT  133 (176)
T ss_dssp             ECTTEEEEEEESSSEEEEEEEE
T ss_pred             EccceeeEEeeccccceEEEec
Confidence            9999999999999965555543

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=93.73  E-value=0.062  Score=51.40  Aligned_cols=57  Identities=14%  Similarity=-0.017  Sum_probs=41.3

Q ss_pred             CCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCC
Q psy12281        236 GPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSG  315 (456)
Q Consensus       236 G~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsg  315 (456)
                      -++|..+..|.......  +.+|.|+=+.++                               ...++..+|||+++||++
T Consensus       263 l~pG~~~~~hrH~~~~v--~~v~~G~g~~~i-------------------------------~g~~~~~~~GDv~~vP~~  309 (355)
T d3bu7a1         263 LRPGEHTKAHRHTGNVI--YNVAKGQGYSIV-------------------------------GGKRFDWSEHDIFCVPAW  309 (355)
T ss_dssp             ECTTCBCCCEEESSCEE--EEEEECCEEEEE-------------------------------TTEEEEECTTCEEEECTT
T ss_pred             ECCCCccCCcCccCcEE--EEEEECcEEEEE-------------------------------CCEEEEeeCCCEEEeCCC
Confidence            35566677777655544  566676644444                               123689999999999999


Q ss_pred             CeEEEEeCCC
Q psy12281        316 WHHQVTNLEH  325 (456)
Q Consensus       316 W~H~V~nl~~  325 (456)
                      .||+..|.++
T Consensus       310 ~~h~~~N~s~  319 (355)
T d3bu7a1         310 TWHEHCNTQE  319 (355)
T ss_dssp             CCEEEEECCS
T ss_pred             CcEEeecCCC
Confidence            9999999876

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=93.15  E-value=0.16  Score=47.60  Aligned_cols=81  Identities=15%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             eeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        232 FVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      +....++|..+++|+..... -++.++.|+=++.+                               ...+..++|||+++
T Consensus       217 ~~~~~~~G~~~~~H~H~~~~-e~~~vl~G~~~~~v-------------------------------~~~~~~~~~Gd~~~  264 (330)
T d1y3ta1         217 VSSEGPKGDRIVDHYHEYHT-ETFYCLEGQMTMWT-------------------------------DGQEIQLNPGDFLH  264 (330)
T ss_dssp             EEEEECSCCCCCCEECSSCE-EEEEEEESCEEEEE-------------------------------TTEEEEECTTCEEE
T ss_pred             EEEEECCCCccCccCcCCcc-EEEEEEecEEEEEE-------------------------------CCEEEEeCCCCEEE
Confidence            34455677788888865332 23677888766654                               01258899999999


Q ss_pred             eCCCCeEEEEeCCCcEEEEeecCCCCCHHHHHHH
Q psy12281        312 VPSGWHHQVTNLEHTISINHNWINGTNIDHVYHE  345 (456)
Q Consensus       312 IPsgW~H~V~nl~~sIsvn~~~~~~~nl~~~~~~  345 (456)
                      ||+|.+|...|.++...+-.-+ .+..++.+++.
T Consensus       265 vP~g~~H~~~~~~~~~~~l~~~-~p~~~e~~f~~  297 (330)
T d1y3ta1         265 VPANTVHSYRLDSHYTKMVGVL-VPGLFEPFFRT  297 (330)
T ss_dssp             ECTTCCEEEEECSSSEEEEEEE-ESSTTTHHHHH
T ss_pred             ECcCCcEEeEeCCCCeEEEEEE-CCccHHHHHHH
Confidence            9999999999987743333323 33455544433

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=92.93  E-value=0.17  Score=47.94  Aligned_cols=62  Identities=18%  Similarity=0.023  Sum_probs=44.7

Q ss_pred             cccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEE
Q psy12281        241 WTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQV  320 (456)
Q Consensus       241 ~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V  320 (456)
                      +.++|+.... .-|+.++.|+=++++.....                          ...+++++|||+++||+|-+|..
T Consensus        60 g~~~H~H~~~-~E~~~vl~G~~~~~~~~~~~--------------------------~~~~~~l~~GD~~~~P~g~~H~~  112 (348)
T d1juha_          60 GVLPHIHQKH-YENFYCNKGSFQLWAQSGNE--------------------------TQQTRVLSSGDYGSVPRNVTHTF  112 (348)
T ss_dssp             SSCCEECSSC-EEEEEEEESEEEEEEEETTS--------------------------CCEEEEEETTCEEEECTTEEEEE
T ss_pred             CCCccccccc-eEEEEEEeeEEEEEEeccCC--------------------------ceEEEEeCCCCEEEECCCCeEee
Confidence            4677875432 12378999998887643321                          12368899999999999999999


Q ss_pred             EeCCCcEEE
Q psy12281        321 TNLEHTISI  329 (456)
Q Consensus       321 ~nl~~sIsv  329 (456)
                      .|.++...+
T Consensus       113 ~n~~~~~~~  121 (348)
T d1juha_         113 QIQDPDTEM  121 (348)
T ss_dssp             EECSTTEEE
T ss_pred             EeCCCCcEE
Confidence            999984333

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=92.60  E-value=0.092  Score=50.17  Aligned_cols=59  Identities=20%  Similarity=0.207  Sum_probs=44.3

Q ss_pred             eeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeC
Q psy12281        234 YMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVP  313 (456)
Q Consensus       234 ~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIP  313 (456)
                      .+.| |..++.|.....  +|..+|.|+=.++..-                              .-.+.+++||++++|
T Consensus        91 ~l~P-Ge~~~~HrH~~~--~~~~vi~G~g~~t~v~------------------------------ge~~~~~~GD~~~~P  137 (355)
T d3bu7a1          91 TMKA-GERAGAHRHAAS--ALRFIMEGSGAYTIVD------------------------------GHKVELGANDFVLTP  137 (355)
T ss_dssp             EECT-TCBCCCEEESSC--EEEEEEECSCEEEEET------------------------------TEEEEECTTCEEEEC
T ss_pred             eeCC-CCcCcccccccc--eeEEEEECCcEEEEEC------------------------------CEEEEeeCCCEEEeC
Confidence            4444 455999988654  4588888876666431                              124789999999999


Q ss_pred             CCCeEEEEeCCC
Q psy12281        314 SGWHHQVTNLEH  325 (456)
Q Consensus       314 sgW~H~V~nl~~  325 (456)
                      +|.||...|.++
T Consensus       138 ~~~~H~h~n~~~  149 (355)
T d3bu7a1         138 NGTWHEHGILES  149 (355)
T ss_dssp             TTCCEEEEECTT
T ss_pred             CCceEeeecCCC
Confidence            999999999854

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=92.53  E-value=0.23  Score=42.00  Aligned_cols=75  Identities=15%  Similarity=0.204  Sum_probs=60.7

Q ss_pred             CccceeeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCC
Q psy12281        228 DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAG  307 (456)
Q Consensus       228 ~~~~~l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pG  307 (456)
                      .++.-.++|.+.+.|..|+|...-+  +.|+.|.=...+...                           .+...+.+++|
T Consensus        34 ~d~iVMvVGGPN~R~DyH~~~~eE~--FyQlkG~m~Lkv~e~---------------------------g~~~di~I~EG   84 (174)
T d1yfua1          34 SDFIVTVVGGPNHRTDYHDDPLEEF--FYQLRGNAYLNLWVD---------------------------GRRERADLKEG   84 (174)
T ss_dssp             CSEEEEEECSCBCCCCEEECSSCEE--EEEEESCEEEEEEET---------------------------TEEEEEEECTT
T ss_pred             CCEEEEEecCCcccCccccCcchhh--eeeeccceEEEEEeC---------------------------CceEEEEcCCC
Confidence            4567778999999999999998876  999999866665432                           24557899999


Q ss_pred             CEEEeCCCCeEEEEeC-CCcEEEEe
Q psy12281        308 DSIFVPSGWHHQVTNL-EHTISINH  331 (456)
Q Consensus       308 D~LfIPsgW~H~V~nl-~~sIsvn~  331 (456)
                      |+.++|+.--|.-.-. .+||.+-.
T Consensus        85 e~fLLP~~vpHSPqR~~~~tiGLVi  109 (174)
T d1yfua1          85 DIFLLPPHVRHSPQRPEAGSACLVI  109 (174)
T ss_dssp             CEEEECTTCCEEEEBCCTTCEEEEE
T ss_pred             cEEEeCCCCCCCcccCCCCceeEEE
Confidence            9999999999999776 47887754

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=92.25  E-value=0.19  Score=47.67  Aligned_cols=62  Identities=16%  Similarity=0.009  Sum_probs=45.2

Q ss_pred             CCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCC
Q psy12281        237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGW  316 (456)
Q Consensus       237 ~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW  316 (456)
                      ++|..+..|......  +++++.|+=+.++                               ...++..+|||+++||++.
T Consensus       271 ~pG~~~~~hrh~~~~--v~~vi~G~g~~~i-------------------------------~~~~~~~~~gDvf~vP~~~  317 (351)
T d2phda1         271 RAGTETATRNEVGST--VFQVFEGAGAVVM-------------------------------NGETTKLEKGDMFVVPSWV  317 (351)
T ss_dssp             CTTCBCCCEEESSCE--EEEEEESCEEEEE-------------------------------TTEEEEECTTCEEEECTTC
T ss_pred             cCCCcCCCccccCcE--EEEEEeCcEEEEE-------------------------------CCEEEEEcCCCEEEeCCCC
Confidence            456667777775543  3777777755443                               1236899999999999999


Q ss_pred             eEEEEeCCCcEEEEe
Q psy12281        317 HHQVTNLEHTISINH  331 (456)
Q Consensus       317 ~H~V~nl~~sIsvn~  331 (456)
                      +|+..|.++++-+.+
T Consensus       318 ~h~~~n~~~~~Lf~~  332 (351)
T d2phda1         318 PWSLQAETQFDLFRF  332 (351)
T ss_dssp             CEEEEESSCEEEEEE
T ss_pred             cEEEecCCCeEEEEE
Confidence            999999888765554

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=91.95  E-value=0.2  Score=46.88  Aligned_cols=75  Identities=20%  Similarity=0.143  Sum_probs=51.8

Q ss_pred             eeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeC
Q psy12281        234 YMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVP  313 (456)
Q Consensus       234 ~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIP  313 (456)
                      ...++|..+++|...... -+..++.|+=++.+            .                   .-+..++|||++|+|
T Consensus        47 ~~~~pG~~~~~h~H~~~~-e~~~vl~G~~~~~~------------~-------------------~~~~~l~~Gd~~~~p   94 (330)
T d1y3ta1          47 LSGGKGDAFPLHVHKDTH-EGILVLDGKLELTL------------D-------------------GERYLLISGDYANIP   94 (330)
T ss_dssp             EEECTTCEEEEEECTTCC-EEEEEEESCEEEEE------------T-------------------TEEEEECTTCEEEEC
T ss_pred             EEECCCCcCCcccCCCce-EEEEEeCCEEEEEE------------C-------------------CEEEEEcCCCEEEeC
Confidence            334567779999865332 23678899876665            0                   115789999999999


Q ss_pred             CCCeEEEEeCCCcEEEEeecCCCCCHHH
Q psy12281        314 SGWHHQVTNLEHTISINHNWINGTNIDH  341 (456)
Q Consensus       314 sgW~H~V~nl~~sIsvn~~~~~~~nl~~  341 (456)
                      +|-+|...|.++...+-.++. ..++..
T Consensus        95 ~~~~H~~~n~~~~~~~l~~~~-p~~~~~  121 (330)
T d1y3ta1          95 AGTPHSYRMQSHRTRLVSYTM-KGNVAH  121 (330)
T ss_dssp             TTCCEEEEECSTTEEEEEEEE-TTSSTH
T ss_pred             CCCeEEEEEcCCCeEEEEEEC-CccHHH
Confidence            999999999998655544443 334333

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=91.88  E-value=0.069  Score=46.86  Aligned_cols=68  Identities=18%  Similarity=0.178  Sum_probs=47.6

Q ss_pred             eeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeC
Q psy12281        234 YMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVP  313 (456)
Q Consensus       234 ~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIP  313 (456)
                      -|-|.+-..|-|.|   +..+..++.|+-+..++-|+...--+                     ...+-.+++||+++||
T Consensus        48 ~i~P~~l~lP~~~n---A~~i~yV~~G~G~v~~v~p~~~~~~~---------------------~~~~~~l~~GDv~~iP  103 (200)
T d2phla1          48 RSKPETLLLPQQAD---AELLLVVRSGSAILVLVKPDDRREYF---------------------FLTSDNPIFSDHQKIP  103 (200)
T ss_dssp             EECSSEEEEEEEES---EEEEEEEEESEEEEEEEETTTEEEEE---------------------EEESSCTTSCSEEEEC
T ss_pred             EecCCceeeeecCC---CCEEEEEEeeeEEEEEEECCCCceee---------------------hhhccCccCCCEEEEC
Confidence            45555554555543   44568999999999999887543211                     0112247899999999


Q ss_pred             CCCeEEEEeCCC
Q psy12281        314 SGWHHQVTNLEH  325 (456)
Q Consensus       314 sgW~H~V~nl~~  325 (456)
                      +|-.|.+.|.++
T Consensus       104 aG~~~~~~n~~~  115 (200)
T d2phla1         104 AGTIFYLVNPDP  115 (200)
T ss_dssp             TTCEEEEEECCS
T ss_pred             CCCeEEEEECCC
Confidence            999999999775

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.53  E-value=0.7  Score=39.54  Aligned_cols=86  Identities=10%  Similarity=0.013  Sum_probs=57.1

Q ss_pred             eeeeCCCCCcccccccccC-ccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--CC
Q psy12281        232 FVYMGPKETWTPLHADVFH-SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--GD  308 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~-~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--GD  308 (456)
                      .+-...+|+.-.+|++... ..=....+.|+=...++......               |   .|  .+...++|.+  +.
T Consensus        52 n~S~s~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S---------------~---Tf--gk~~~~~L~~~~~~  111 (184)
T d2ixha1          52 NHSRSARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGS---------------P---TF--GQWVGERLSAENKR  111 (184)
T ss_dssp             EEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTS---------------T---TT--TCEEEEEEETTTCC
T ss_pred             eEEEcccCceEEEEEcccchhheecceeeeEEEEEEeecccCC---------------C---CC--CceEEeeecccCcc
Confidence            3445568999999987432 11226778888887776544321               1   11  3455566655  66


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEeecCCCC
Q psy12281        309 SIFVPSGWHHQVTNLEHTISINHNWINGT  337 (456)
Q Consensus       309 ~LfIPsgW~H~V~nl~~sIsvn~~~~~~~  337 (456)
                      +||||+|.+|...+|++...|.+.--+.+
T Consensus       112 ~l~IP~G~aHGf~~L~~~~~v~Y~~s~~y  140 (184)
T d2ixha1         112 QMWIPAGFAHGFVVLSEYAEFLYKTTDFW  140 (184)
T ss_dssp             EEEECTTEEEEEEECSSEEEEEEEESSCC
T ss_pred             EEEecCCeEEEEEecCCceEEEecccccc
Confidence            89999999999999999666666544443

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=0.47  Score=37.07  Aligned_cols=61  Identities=16%  Similarity=0.247  Sum_probs=45.6

Q ss_pred             ccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEE
Q psy12281        251 SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISIN  330 (456)
Q Consensus       251 ~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn  330 (456)
                      +++-.++++|+=+|.-|..+...                       ....++++++|+.-+||+..||.|..+++.+-.+
T Consensus        39 vwg~l~Vl~G~L~y~~~~d~~~~-----------------------~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD~~f~   95 (109)
T d3bb6a1          39 VYPRLSVMHGAVKYLGYADEHSA-----------------------EPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFN   95 (109)
T ss_dssp             EEEEEEEEESEEEEEEESSTTCS-----------------------SCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEE
T ss_pred             EEEEEEEEEEEEEEEEeccCCCC-----------------------CcceEEEecCCCceeeCCCccEEeEECCCCEEEE
Confidence            34446789999999877654322                       2235788999999999999999999998755555


Q ss_pred             eecC
Q psy12281        331 HNWI  334 (456)
Q Consensus       331 ~~~~  334 (456)
                      .+|.
T Consensus        96 v~Fy   99 (109)
T d3bb6a1          96 IDFF   99 (109)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=91.01  E-value=0.57  Score=40.34  Aligned_cols=86  Identities=6%  Similarity=-0.031  Sum_probs=58.5

Q ss_pred             eeeeCCCCCccccccccc--CccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCE
Q psy12281        232 FVYMGPKETWTPLHADVF--HSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDS  309 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~--~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~  309 (456)
                      ++-...+|+...+|+-..  ..-=+...|.|+=..+++.......                  .|-+...+....+.+.+
T Consensus        49 n~S~s~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~------------------t~gk~~~~~l~~~~~~~  110 (190)
T d2c0za1          49 NLSVSVRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSP------------------TYGCWEGTRLDDVSRRA  110 (190)
T ss_dssp             EEEEEETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCT------------------TTTCEEEEEEETTTCCE
T ss_pred             eehhhhhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccc------------------eeEEEeeecccccccee
Confidence            344456889899997532  2223478899998888876543221                  12223445566688999


Q ss_pred             EEeCCCCeEEEEeCCCcEEEEeecCC
Q psy12281        310 IFVPSGWHHQVTNLEHTISINHNWIN  335 (456)
Q Consensus       310 LfIPsgW~H~V~nl~~sIsvn~~~~~  335 (456)
                      ||||+|.+|...++++...|.+.--+
T Consensus       111 l~IP~G~aHGf~~L~~~t~i~Y~~s~  136 (190)
T d2c0za1         111 VYLSEGIGHGFCAISDEATLCYLSSG  136 (190)
T ss_dssp             EEECTTEEEEEEECSSEEEEEEEESS
T ss_pred             EEecCCcEEEEeecCchheeEEecCC
Confidence            99999999999999986666654433

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=90.80  E-value=0.16  Score=40.64  Aligned_cols=27  Identities=22%  Similarity=0.172  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCEEEeCCCCeEEEEeCC
Q psy12281        298 TVIIVEQEAGDSIFVPSGWHHQVTNLE  324 (456)
Q Consensus       298 ~~~~~~l~pGD~LfIPsgW~H~V~nl~  324 (456)
                      ...+.+++|||.+|+|++-.|+..|.+
T Consensus        84 ~~~~~~l~~GDsi~~~~~~pH~~~n~~  110 (122)
T d2bnma2          84 NPKEALLPTGASMFVEEHVPHAFTAAK  110 (122)
T ss_dssp             SCEEEEECTTCEEEECTTCCEEEEEST
T ss_pred             CCEEEEEccCcEEEeCCCCCEEEEcCC
Confidence            345688999999999999999999974

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=90.22  E-value=0.33  Score=42.05  Aligned_cols=82  Identities=20%  Similarity=0.155  Sum_probs=52.0

Q ss_pred             eeeCCCCCcccccccccCccceeEEEE-eEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNIC-GRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~-G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      +-.+.+|+.-.+|+.+....  ...+. |+=..+++.....                |   .|  .+...+++.++..||
T Consensus        61 ~S~S~kgvlRGlH~q~~~k~--v~~~~~G~i~~V~vD~R~S----------------~---t~--g~~~~~~l~~~~~i~  117 (194)
T d1nxma_          61 VSFSRKNVLRGLHAEPWDKY--ISVADGGKVLGTWVDLREG----------------E---TF--GNTYQTVIDASKSIF  117 (194)
T ss_dssp             EEEEETTBEEEEEECSSCEE--EEECSSCCEEEEEEECBSS----------------T---TT--TCEEEEEECTTEEEE
T ss_pred             EeeeeeeEEEEEEeccchhh--hhhccccceeEEEEEeccc----------------c---cc--ceeeeeeeccCceEE
Confidence            44567899999999864332  22222 3323333222111                1   11  356788899999999


Q ss_pred             eCCCCeEEEEeCCCcEEEEeecCCCC
Q psy12281        312 VPSGWHHQVTNLEHTISINHNWINGT  337 (456)
Q Consensus       312 IPsgW~H~V~nl~~sIsvn~~~~~~~  337 (456)
                      ||+|..|...+|++...|.+..-+.+
T Consensus       118 IP~G~aHGf~tL~d~t~i~Y~~s~~y  143 (194)
T d1nxma_         118 VPRGVANGFQVLSDFVAYSYLVNDYW  143 (194)
T ss_dssp             ECTTEEEEEEECSSEEEEEEEESSCC
T ss_pred             EecceeeEEEeeccceeEEEecCccc
Confidence            99999999999999666666444433

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.00  E-value=0.12  Score=41.59  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=25.6

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCcEEEE
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHTISIN  330 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn  330 (456)
                      +..++|||++|||+|+.|.-.|.+++..+.
T Consensus        91 ~~~l~~Gd~~~~p~g~~h~~~~~~~~~~~~  120 (128)
T d2pyta1          91 TMIAKAGDVMFIPKGSSIEFGTPTSVRFLY  120 (128)
T ss_dssp             EEEEETTCEEEECTTCEEEEEEEEEEEEEE
T ss_pred             EEEecCCCEEEECCCCEEEEEeCCCEEEEE
Confidence            578999999999999999999988754443

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=89.89  E-value=0.8  Score=42.97  Aligned_cols=77  Identities=14%  Similarity=0.028  Sum_probs=50.5

Q ss_pred             eCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCC
Q psy12281        235 MGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPS  314 (456)
Q Consensus       235 iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPs  314 (456)
                      +.+.+...+ |+.... .-|+.++.|+=++.+..           +                   -+..++|||++|||+
T Consensus       256 ~~pg~~~~~-~~~~~~-~e~~~vleG~~~~~i~~-----------~-------------------~~~~l~~GD~~~vP~  303 (348)
T d1juha_         256 TTPSTVTVP-TWSFPG-ACAFQVQEGRVVVQIGD-----------Y-------------------AATELGSGDVAFIPG  303 (348)
T ss_dssp             CCCTTSCCC-CBCCSS-CEEEEEEESCEEEEETT-----------S-------------------CCEEECTTCEEEECT
T ss_pred             ecCCCCCCC-cccCCC-CEEEEEEeceEEEEeCC-----------c-------------------ceEEecCCCEEEECC
Confidence            345455444 433333 24688999987777611           0                   136799999999999


Q ss_pred             CCeEEEEeCCCcEEEEeecCCCCCHHHHH
Q psy12281        315 GWHHQVTNLEHTISINHNWINGTNIDHVY  343 (456)
Q Consensus       315 gW~H~V~nl~~sIsvn~~~~~~~nl~~~~  343 (456)
                      |-.|+..|......+-.-...+..++.++
T Consensus       304 g~~h~~~~~~~~~~~~~~~~~~~g~~~~~  332 (348)
T d1juha_         304 GVEFKYYSEAYFSKVLFVSSGSDGLDQNL  332 (348)
T ss_dssp             TCCEEEEESSSSEEEEEEEESSSSHHHHH
T ss_pred             CCcEEEEeCCCCcEEEEEEcCCCchHHHH
Confidence            99999999998666554333445555544

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.74  E-value=0.88  Score=38.82  Aligned_cols=87  Identities=15%  Similarity=0.060  Sum_probs=57.2

Q ss_pred             eeeeCCCCCcccccccccCc-cceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcC--CC
Q psy12281        232 FVYMGPKETWTPLHADVFHS-YSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEA--GD  308 (456)
Q Consensus       232 ~l~iG~~gs~T~lH~D~~~~-~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~p--GD  308 (456)
                      .+-++.+|+...+|+..... .=....+.|+=..+++.......                  .|  .+...+.+.+  |.
T Consensus        49 n~s~s~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~------------------tf--gk~~~~~L~~~~~~  108 (183)
T d1ep0a_          49 NESMSVRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSD------------------TY--GEWTGVRLSDENRR  108 (183)
T ss_dssp             EEEEEETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCT------------------TT--TCEEEEEEETTTCC
T ss_pred             eeeeeccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCC------------------cC--CeeeEEEecCCCcc
Confidence            34445688889999864321 11267788998888875543211                  11  2344555544  66


Q ss_pred             EEEeCCCCeEEEEeCCCcEEEEeecCCCCC
Q psy12281        309 SIFVPSGWHHQVTNLEHTISINHNWINGTN  338 (456)
Q Consensus       309 ~LfIPsgW~H~V~nl~~sIsvn~~~~~~~n  338 (456)
                      +||||+|.+|.-.+|++...|.+..-+.++
T Consensus       109 ~l~IP~G~aHGf~~L~d~~~i~Y~~s~~y~  138 (183)
T d1ep0a_         109 EFFIPEGFAHGFLALSDECIVNYKCTELYH  138 (183)
T ss_dssp             EEEECTTEEEEEEECSSEEEEEEEESSCCC
T ss_pred             eeEecCCceeeeeeccCceEEEEeccCCcC
Confidence            999999999999999997666665554443

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=88.68  E-value=1.1  Score=38.83  Aligned_cols=85  Identities=13%  Similarity=0.112  Sum_probs=55.8

Q ss_pred             ceeeeCCCCCcccccccccC--ccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEE--cC
Q psy12281        231 RFVYMGPKETWTPLHADVFH--SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQ--EA  306 (456)
Q Consensus       231 ~~l~iG~~gs~T~lH~D~~~--~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l--~p  306 (456)
                      .++-.+.+|+.-.+|+....  ..-...++.|+=...++......               |   .|  .+...++|  +.
T Consensus        49 ~n~S~s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~S---------------p---Tf--g~~~~~~L~~~~  108 (202)
T d1oi6a_          49 TIHSMSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGS---------------P---TF--GQWDSVLMDQQD  108 (202)
T ss_dssp             EEEEEECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTC---------------T---TT--TCEEEEEECSSS
T ss_pred             ehhhcchhheeeeeeecccccchhheeeeccccEEEEEEecccCC---------------C---cc--ceeeeeeccccc
Confidence            34566788999999977432  21225678898888886543321               1   11  23344444  45


Q ss_pred             CCEEEeCCCCeEEEEeCCCcEEEEeecCC
Q psy12281        307 GDSIFVPSGWHHQVTNLEHTISINHNWIN  335 (456)
Q Consensus       307 GD~LfIPsgW~H~V~nl~~sIsvn~~~~~  335 (456)
                      +.+||||+|.+|...++++.-.|.+..-+
T Consensus       109 ~~~l~IP~G~aHGf~~L~d~t~v~Y~~s~  137 (202)
T d1oi6a_         109 PRAVYLPVGVGHAFVALEDDTVMSYMLSR  137 (202)
T ss_dssp             CCEEEECTTCEEEEEECSTTEEEEEEESS
T ss_pred             ceeEEeccceeEEEeeccccceeEEecCC
Confidence            67999999999999999986666664333

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.32  E-value=0.52  Score=42.20  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=23.2

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      +..+++||+||||++-.|++.|.+.
T Consensus       208 ~~~~~~GD~i~~~~~~pH~~~n~G~  232 (250)
T d1sefa_         208 WYPVEKGDYIFMSAYVPQAAYAVGR  232 (250)
T ss_dssp             EEEEETTCEEEECTTCCEEEEEECS
T ss_pred             EEEecCCCEEEECCCCCEEeEcCCC
Confidence            5789999999999999999999974

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=85.49  E-value=0.41  Score=36.37  Aligned_cols=26  Identities=19%  Similarity=0.141  Sum_probs=24.3

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCCc
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEHT  326 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~s  326 (456)
                      ..+|++||++++|++=.|...|.++.
T Consensus        63 ~~~l~~GD~~~~~~~~~H~~~n~~~~   88 (99)
T d1y9qa2          63 WHELQQGEHIRFFSDQPHGYAAVTEK   88 (99)
T ss_dssp             EEEECTTCEEEEECSSSEEEEESSSC
T ss_pred             EEEecCCCEEEECCCCeEEEEeCCcc
Confidence            67899999999999999999999884

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=85.36  E-value=1  Score=38.71  Aligned_cols=76  Identities=18%  Similarity=0.131  Sum_probs=47.9

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCC-cccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEE
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNE-KYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIF  311 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~-~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~Lf  311 (456)
                      +..-++|..||.|-.. . -.+..++.|.-+=.+|--... ..+                     ...-+..+.+||+.+
T Consensus        72 ~i~W~pG~~tpiHdH~-~-w~~~~vl~G~l~e~~y~~~~~~~~~---------------------~~~~~~~l~~G~v~~  128 (192)
T d2gm6a1          72 SFVWGPGQRTPIHDHT-V-WGLIGMLRGAEYSQPFVLDGSGRPV---------------------LHGEPTRLEPGHVEA  128 (192)
T ss_dssp             EEEECTTCBCCSBCCS-S-CEEEEEEESCEEEEEEEECTTSCEE---------------------ECSCCEEECTTCEEE
T ss_pred             EEecCCCCCCCCCCCC-C-ceEEEEEcCeEEEEEeeeCCCCCcc---------------------cccceEEecCCCEEE
Confidence            3444678889999653 3 355778899877776632111 101                     111245789999988


Q ss_pred             e--CCCCeEEEEeC-CC--cEEEEe
Q psy12281        312 V--PSGWHHQVTNL-EH--TISINH  331 (456)
Q Consensus       312 I--PsgW~H~V~nl-~~--sIsvn~  331 (456)
                      +  +.|..|+|.|. ++  +|||..
T Consensus       129 ~~~~~~~IH~v~N~~~~~~avSLHv  153 (192)
T d2gm6a1         129 VSPTVGDIHRVHNAYDDRVSISIHV  153 (192)
T ss_dssp             EBTTTBCCEEEEESCSSSCEEEEEE
T ss_pred             ECCCCCceeEEecCCCCccEEEEEE
Confidence            7  45789999996 44  455543

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.82  E-value=0.66  Score=42.19  Aligned_cols=25  Identities=24%  Similarity=0.171  Sum_probs=23.6

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      ...++|||++|+|++-.|+..|.++
T Consensus       229 ~~~v~~GD~i~~~~~~ph~~~n~g~  253 (273)
T d1sq4a_         229 WVEVEAGDFMWLRAFCPQACYSGGP  253 (273)
T ss_dssp             EEEEETTCEEEEEESCCEEEECCSS
T ss_pred             EEEecCCCEEEECCCCCEEeEeCCC
Confidence            5889999999999999999999987

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.20  E-value=1.1  Score=39.73  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=23.2

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      ...+++||++|+|++-.|+..|.++
T Consensus       205 ~~~v~~GD~i~~~~~~~H~~~n~g~  229 (245)
T d1sfna_         205 YYPVTAGDIIWMGAHCPQWYGALGR  229 (245)
T ss_dssp             EEEEETTCEEEECTTCCEEEEEESS
T ss_pred             EEEecCCCEEEECCCCCEeeEeCCC
Confidence            4678999999999999999999987

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=83.49  E-value=1.5  Score=38.96  Aligned_cols=86  Identities=17%  Similarity=0.116  Sum_probs=54.1

Q ss_pred             eeeCCCCCcccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEe
Q psy12281        233 VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFV  312 (456)
Q Consensus       233 l~iG~~gs~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfI  312 (456)
                      .-|-|.+-..|.|.|.   ..+..++.|+=.+-++-|+...-........    ....-.+++..+-....+++||++-|
T Consensus        44 ~~I~p~gL~lP~y~~a---~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~----~~~~~~~~~d~~qk~~~lr~GDVi~i  116 (239)
T d1fxza1          44 CTLNRNALRRPSYTNG---PQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQ----QRGQSSRPQDRHQKIYNFREGDLIAV  116 (239)
T ss_dssp             EEECTTEEEEEEEESS---CEEEEEEECCEEEEEECTTCCCC----------------------CCCCEEEECTTEEEEE
T ss_pred             eeeccCceecceecCC---CeEEEEEeCEEEEEEecCCChhhhccccccc----ccccccccchhhhhhhccccCCEEEe
Confidence            4466766666666543   3458899999999999888755322110000    00000112235556678999999999


Q ss_pred             CCCCeEEEEeCCC
Q psy12281        313 PSGWHHQVTNLEH  325 (456)
Q Consensus       313 PsgW~H~V~nl~~  325 (456)
                      |+|-.|.++|-++
T Consensus       117 PAG~~~w~~N~gn  129 (239)
T d1fxza1         117 PTGVAWWMYNNED  129 (239)
T ss_dssp             CTTCEEEEEECSS
T ss_pred             cCCceEEEEeCCC
Confidence            9999999999887

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=83.36  E-value=2.8  Score=31.69  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=40.2

Q ss_pred             ccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEEEeCCCcEEEE
Q psy12281        251 SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISIN  330 (456)
Q Consensus       251 ~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V~nl~~sIsvn  330 (456)
                      +++-.+++.|+=+|.-|.-+...                       ....++++.+|+.-+||+..||.|. +.+-+-.+
T Consensus        34 vwg~i~Vl~G~L~y~~~~d~~~~-----------------------e~~~~~~~~~g~~~~~~Pq~wH~Ve-~sdD~~f~   89 (96)
T d3dl3a1          34 VFGQICVMEGVVTYYGFANSEAT-----------------------EPEIKVVINAGQFATSPPQYWHRIE-LSDDAQFN   89 (96)
T ss_dssp             EEEEEEEEESEEEEEEESSTTCC-----------------------SCSEEEEEETTEEEEECTTCEEEEE-ECTTCEEE
T ss_pred             eEEEEEEEEEEEEEEEeccCCCC-----------------------cccEEEEecCCCcceeCCCccEEEE-eCCCeEEE
Confidence            33446789999988766422211                       2345789999999999999999999 55544433


Q ss_pred             ee
Q psy12281        331 HN  332 (456)
Q Consensus       331 ~~  332 (456)
                      .+
T Consensus        90 v~   91 (96)
T d3dl3a1          90 IN   91 (96)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=83.27  E-value=1.2  Score=39.68  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=21.9

Q ss_pred             EEEEcCCCEEEeCCCCeEEEEeCCC
Q psy12281        301 IVEQEAGDSIFVPSGWHHQVTNLEH  325 (456)
Q Consensus       301 ~~~l~pGD~LfIPsgW~H~V~nl~~  325 (456)
                      +..++|||+||||++-.|+..|.+.
T Consensus       211 ~~~~~~GD~i~~~~~~ph~~~~~g~  235 (253)
T d1rc6a_         211 WIPVKKGDYIFMGAYSLQAGYGVGR  235 (253)
T ss_dssp             EEEEETTCEEEECSSEEEEEEEC--
T ss_pred             EEEecCCCEEEECCCCCEeeeeCCC
Confidence            5788999999999999999999975

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.74  E-value=0.78  Score=40.95  Aligned_cols=52  Identities=19%  Similarity=0.085  Sum_probs=39.2

Q ss_pred             cccccccccCccceeEEEEeEEEEEEeCCCCCcccccCCCCccccCCCcccCCCCCCceEEEEEcCCCEEEeCCCCeEEE
Q psy12281        241 WTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQV  320 (456)
Q Consensus       241 ~T~lH~D~~~~~sW~~~i~G~Krw~L~pP~~~~~Ly~~~g~~p~d~~~pd~~~fp~~~~~~~~l~pGD~LfIPsgW~H~V  320 (456)
                      .++.|.+....+  ..++.|+=+..+            .|                   -+..+.|||.+|+|+|-.|..
T Consensus        62 ~~~~~~~~~Ee~--~yVl~G~~~~~~------------~~-------------------~~~~l~~Gd~~~~p~~~~H~~  108 (250)
T d1sefa_          62 TTGFGGDGIQTL--VYVIDGRLRVSD------------GQ-------------------ETHELEAGGYAYFTPEMKMYL  108 (250)
T ss_dssp             CSCSSBTTEEEE--EEEEESEEEEEC------------SS-------------------CEEEEETTEEEEECTTSCCEE
T ss_pred             CCCCCCCCcEEE--EEEEeeEEEEEE------------CC-------------------EEEEEcCCCEEEEcCCCcEEE
Confidence            355666665555  678888865554            01                   146899999999999999999


Q ss_pred             EeCCC
Q psy12281        321 TNLEH  325 (456)
Q Consensus       321 ~nl~~  325 (456)
                      .|.++
T Consensus       109 ~N~~~  113 (250)
T d1sefa_         109 ANAQE  113 (250)
T ss_dssp             EESSS
T ss_pred             EECCC
Confidence            99987