Psyllid ID: psy12290
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 530 | 2.2.26 [Sep-21-2011] | |||||||
| P51512 | 607 | Matrix metalloproteinase- | yes | N/A | 0.449 | 0.392 | 0.373 | 1e-39 | |
| Q9ULZ9 | 603 | Matrix metalloproteinase- | no | N/A | 0.379 | 0.333 | 0.407 | 2e-39 | |
| Q5RES1 | 582 | Matrix metalloproteinase- | yes | N/A | 0.415 | 0.378 | 0.359 | 3e-39 | |
| Q10739 | 582 | Matrix metalloproteinase- | no | N/A | 0.415 | 0.378 | 0.359 | 5e-39 | |
| Q99PW6 | 618 | Matrix metalloproteinase- | no | N/A | 0.394 | 0.338 | 0.402 | 6e-39 | |
| O54732 | 657 | Matrix metalloproteinase- | yes | N/A | 0.379 | 0.305 | 0.402 | 7e-39 | |
| Q9R0S2 | 618 | Matrix metalloproteinase- | no | N/A | 0.394 | 0.338 | 0.402 | 7e-39 | |
| Q9R0S3 | 578 | Matrix metalloproteinase- | no | N/A | 0.394 | 0.361 | 0.395 | 8e-39 | |
| O35548 | 607 | Matrix metalloproteinase- | no | N/A | 0.449 | 0.392 | 0.373 | 9e-39 | |
| P50281 | 582 | Matrix metalloproteinase- | no | N/A | 0.415 | 0.378 | 0.354 | 1e-38 |
| >sp|P51512|MMP16_HUMAN Matrix metalloproteinase-16 OS=Homo sapiens GN=MMP16 PE=1 SV=2 | Back alignment and function desciption |
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Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 136/257 (52%), Gaps = 19/257 (7%)
Query: 195 PPARYPDIARAEPRTTPTTTTPPATRRGESNPGP-----------SDKPDTCDTSYDAIA 243
PP + P R P P + PPA R P P KP+ CD +++ +A
Sbjct: 292 PPDKIPPPTRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGNFNTLA 351
Query: 244 VIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAVYQRIDNHIAFFIG 303
++R E+FVFKD+W WR+ + V+ GYP+ I FW LP + IDAVY+ D + FF G
Sbjct: 352 ILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPS---IDAVYENSDGNFVFFKG 408
Query: 304 RQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLFSGTRYWKLDDETGR 363
+Y++F+ L PGYP L LG ID+A+ W KTY F G RYW+ +E
Sbjct: 409 NKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDVGKTYFFKGDRYWRYSEEMKT 468
Query: 364 SEPDYPRNMTENWRGVGVDIDDAFQWK-DGATYFFKGKGFWKFKDVSMRVEKEKPSPSAQ 422
+P YP+ +T W+G+ AF K +G TYF+KGK +WKF + ++VE P +
Sbjct: 469 MDPGYPKPITV-WKGIPESPQGAFVHKENGFTYFYKGKEYWKFNNQILKVEPGYPRSILK 527
Query: 423 FWMKCPEISSPEDRISE 439
+M C P DR+ E
Sbjct: 528 DFMGC---DGPTDRVKE 541
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Endopeptidase that degrades various components of the extracellular matrix, such as collagen type III and fibronectin. Activates progelatinase A. Involved in the matrix remodeling of blood vessels. Isoform short cleaves fibronectin and also collagen type III, but at lower rate. It has no effect on type I, II, IV and V collagen. However, upon interaction with CSPG4, it may be involved in degradation and invasion of type I collagen by melanoma cells. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: - |
| >sp|Q9ULZ9|MMP17_HUMAN Matrix metalloproteinase-17 OS=Homo sapiens GN=MMP17 PE=1 SV=4 | Back alignment and function description |
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| >sp|Q5RES1|MMP14_PONAB Matrix metalloproteinase-14 OS=Pongo abelii GN=MMP14 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q10739|MMP14_RAT Matrix metalloproteinase-14 OS=Rattus norvegicus GN=Mmp14 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q99PW6|MMP24_RAT Matrix metalloproteinase-24 OS=Rattus norvegicus GN=Mmp24 PE=2 SV=1 | Back alignment and function description |
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| >sp|O54732|MMP15_MOUSE Matrix metalloproteinase-15 OS=Mus musculus GN=Mmp15 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9R0S2|MMP24_MOUSE Matrix metalloproteinase-24 OS=Mus musculus GN=Mmp24 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9R0S3|MMP17_MOUSE Matrix metalloproteinase-17 OS=Mus musculus GN=Mmp17 PE=1 SV=3 | Back alignment and function description |
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| >sp|O35548|MMP16_RAT Matrix metalloproteinase-16 OS=Rattus norvegicus GN=Mmp16 PE=2 SV=1 | Back alignment and function description |
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| >sp|P50281|MMP14_HUMAN Matrix metalloproteinase-14 OS=Homo sapiens GN=MMP14 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 530 | ||||||
| 357616003 | 541 | matrix metalloproteinase 2 [Danaus plexi | 0.671 | 0.658 | 0.413 | 6e-75 | |
| 270012816 | 701 | matrix metalloproteinase 2 [Tribolium ca | 0.581 | 0.439 | 0.479 | 7e-74 | |
| 91089485 | 632 | PREDICTED: similar to matrix metalloprot | 0.581 | 0.487 | 0.479 | 9e-74 | |
| 328721273 | 642 | PREDICTED: matrix metalloproteinase-17-l | 0.390 | 0.322 | 0.574 | 1e-71 | |
| 340719131 | 611 | PREDICTED: matrix metalloproteinase-15-l | 0.584 | 0.507 | 0.450 | 3e-69 | |
| 350398989 | 645 | PREDICTED: matrix metalloproteinase-15-l | 0.556 | 0.457 | 0.457 | 6e-69 | |
| 328783164 | 380 | PREDICTED: matrix metalloproteinase-17-l | 0.603 | 0.842 | 0.439 | 2e-68 | |
| 380013222 | 598 | PREDICTED: matrix metalloproteinase-14-l | 0.581 | 0.515 | 0.436 | 3e-66 | |
| 345480289 | 672 | PREDICTED: matrix metalloproteinase-24-l | 0.562 | 0.443 | 0.453 | 7e-65 | |
| 332027326 | 263 | Matrix metalloproteinase-17 [Acromyrmex | 0.422 | 0.851 | 0.543 | 1e-64 |
| >gi|357616003|gb|EHJ69947.1| matrix metalloproteinase 2 [Danaus plexippus] | Back alignment and taxonomy information |
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Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 183/443 (41%), Positives = 234/443 (52%), Gaps = 87/443 (19%)
Query: 3 DDGWEL-PEDDKMAIQSLYGMNHSWATYGHWALSFKMTTIEAE--FKWFDGGNSTICTNL 59
D+ W L P +D SL+ + + +GH +L ++++ F W+ G
Sbjct: 121 DELWLLRPNNDDEEGTSLFAV--AVHEFGH-SLGLSHSSVKGALMFPWYQG--------- 168
Query: 60 STEVLSPRNQRKKEDRIGESQPFRERTLSICDRKEEKSWAVIPRYSPS------------ 107
P ++DR G Q + K +K+WA IP Y P+
Sbjct: 169 ----FQPNFVLPEDDRNGIQQMYGP--------KVKKTWAKIPYYRPAETPPTTTTTTTT 216
Query: 108 PDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQ--YPETPQDSPRREPSLRQ 165
TTRRP + HHPE HP P P + N YPE P
Sbjct: 217 TTTTTRRPYI------HQHHPERHPNHRPYTPYPRPPNRNPVYYPERPT----------- 259
Query: 166 PNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESN 225
P+ PH P R+ P +P + P P K TT TPPA
Sbjct: 260 ---LPDRPHHPERNYPDHYPKRKPTYPVK--------------TTTIKPTPPA------- 295
Query: 226 PGPSDKPDTCDTSYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLT 285
DKPDTCDTSYDAI++IR E+F+FK+++ WRIG GYP+ I + W+ LP NLT
Sbjct: 296 ----DKPDTCDTSYDAISLIRNELFIFKNKYHWRIGADRRYTGYPIEITRMWTGLPKNLT 351
Query: 286 HIDAVYQRIDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSK 345
H+DAVY+R D IAFFIG+ + L+PGYP+ L LGLP SLE++DAAMVWGYN K
Sbjct: 352 HVDAVYERPDRKIAFFIGKVNMNKLSVYLMPGYPKNLAQLGLPESLEKLDAAMVWGYNGK 411
Query: 346 TYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFFKGKGFWKF 405
TY +SGT YWK D++ GR E DYPR+M W+GVG +ID FQWKDG TYFFKGKGFWKF
Sbjct: 412 TYFYSGTMYWKFDEDLGRVELDYPRDMAM-WKGVGYNIDSVFQWKDGKTYFFKGKGFWKF 470
Query: 406 KDVSMRVEKEKPSPSAQFWMKCP 428
D+ MRVE E+ +PSA WM CP
Sbjct: 471 NDLQMRVENERQTPSAPIWMSCP 493
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Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270012816|gb|EFA09264.1| matrix metalloproteinase 2 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|91089485|ref|XP_969495.1| PREDICTED: similar to matrix metalloproteinase [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|328721273|ref|XP_001945941.2| PREDICTED: matrix metalloproteinase-17-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|340719131|ref|XP_003398010.1| PREDICTED: matrix metalloproteinase-15-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|350398989|ref|XP_003485375.1| PREDICTED: matrix metalloproteinase-15-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|328783164|ref|XP_392898.3| PREDICTED: matrix metalloproteinase-17-like [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|380013222|ref|XP_003690665.1| PREDICTED: matrix metalloproteinase-14-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|345480289|ref|XP_003424120.1| PREDICTED: matrix metalloproteinase-24-like isoform 2 [Nasonia vitripennis] gi|345480291|ref|XP_001607648.2| PREDICTED: matrix metalloproteinase-24-like isoform 1 [Nasonia vitripennis] | Back alignment and taxonomy information |
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| >gi|332027326|gb|EGI67410.1| Matrix metalloproteinase-17 [Acromyrmex echinatior] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 530 | ||||||
| FB|FBgn0033438 | 758 | Mmp2 "Matrix metalloproteinase | 0.424 | 0.296 | 0.458 | 9.7e-65 | |
| MGI|MGI:109320 | 657 | Mmp15 "matrix metallopeptidase | 0.379 | 0.305 | 0.373 | 1.4e-44 | |
| RGD|1308937 | 657 | Mmp15 "matrix metallopeptidase | 0.379 | 0.305 | 0.373 | 3.2e-44 | |
| ZFIN|ZDB-GENE-070820-2 | 597 | mmp17a "matrix metallopeptidas | 0.388 | 0.345 | 0.394 | 5.9e-42 | |
| ZFIN|ZDB-GENE-120215-156 | 578 | si:ch73-248e21.6 "si:ch73-248e | 0.4 | 0.366 | 0.378 | 6.4e-42 | |
| UNIPROTKB|Q9NPA2 | 562 | MMP25 "Matrix metalloproteinas | 0.373 | 0.352 | 0.384 | 6.8e-42 | |
| UNIPROTKB|F1Q270 | 573 | MMP24 "Uncharacterized protein | 0.405 | 0.375 | 0.369 | 1.5e-41 | |
| UNIPROTKB|F1MTK6 | 585 | MMP24 "Uncharacterized protein | 0.405 | 0.367 | 0.369 | 1.6e-41 | |
| UNIPROTKB|P51512 | 607 | MMP16 "Matrix metalloproteinas | 0.386 | 0.337 | 0.366 | 2.8e-41 | |
| MGI|MGI:1341867 | 618 | Mmp24 "matrix metallopeptidase | 0.405 | 0.347 | 0.369 | 3.5e-41 |
| FB|FBgn0033438 Mmp2 "Matrix metalloproteinase 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 553 (199.7 bits), Expect = 9.7e-65, Sum P(4) = 9.7e-65
Identities = 105/229 (45%), Positives = 146/229 (63%)
Query: 231 KPDTCDTSYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAV 290
KPD+C T YDAI++IR E+F+F+ ++WRIG G+ GYP I + WS LP NLT +DAV
Sbjct: 512 KPDSCMTYYDAISIIRGELFIFRGPYLWRIGTSGLYNGYPTEIRRHWSALPENLTKVDAV 571
Query: 291 YQRIDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLFS 350
Y+ I FFIGR+Y++F + L PG+P+PL +LGLP +L IDA+ VWG+N++TY+ S
Sbjct: 572 YENKQRQIVFFIGREYYVFNSVMLAPGFPKPLASLGLPPTLTHIDASFVWGHNNRTYMTS 631
Query: 351 GTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYXXXXXXXXXXXDVSM 410
GT YW++DD TG+ E DYPR+M+ W GVG +ID AFQ+ DG TY D M
Sbjct: 632 GTLYWRIDDYTGQVELDYPRDMSI-WSGVGYNIDAAFQYLDGKTYFFKNLGYWEFNDDRM 690
Query: 411 RVEKEKPSPSAQFWMKCPEISSPEDRISERRVGRAFSSRSTSGGLRQGA 459
+V + SA+ WM+C ++ D E+R + S G R G+
Sbjct: 691 KVAHARAKLSARRWMQCARSANEVD--DEQRWTASLVSEGEETG-RSGS 736
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| MGI|MGI:109320 Mmp15 "matrix metallopeptidase 15" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1308937 Mmp15 "matrix metallopeptidase 15" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-070820-2 mmp17a "matrix metallopeptidase 17a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-120215-156 si:ch73-248e21.6 "si:ch73-248e21.6" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9NPA2 MMP25 "Matrix metalloproteinase-25" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1Q270 MMP24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MTK6 MMP24 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P51512 MMP16 "Matrix metalloproteinase-16" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:1341867 Mmp24 "matrix metallopeptidase 24" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 530 | |||
| cd00094 | 194 | cd00094, HX, Hemopexin-like repeats | 1e-58 | |
| smart00120 | 45 | smart00120, HX, Hemopexin-like repeats | 6e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 2e-06 | |
| pfam00045 | 45 | pfam00045, Hemopexin, Hemopexin | 3e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 3e-06 | |
| pfam00045 | 45 | pfam00045, Hemopexin, Hemopexin | 5e-06 | |
| pfam00045 | 45 | pfam00045, Hemopexin, Hemopexin | 5e-06 | |
| smart00120 | 45 | smart00120, HX, Hemopexin-like repeats | 1e-05 | |
| smart00120 | 45 | smart00120, HX, Hemopexin-like repeats | 2e-05 | |
| PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation | 2e-05 | |
| smart00120 | 45 | smart00120, HX, Hemopexin-like repeats | 3e-05 | |
| pfam00045 | 45 | pfam00045, Hemopexin, Hemopexin | 3e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-04 | |
| PTZ00449 | 943 | PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti | 1e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-04 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 2e-04 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 2e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 4e-04 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 0.001 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 0.002 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.002 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.002 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.003 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.003 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.003 | |
| pfam05616 | 502 | pfam05616, Neisseria_TspB, Neisseria meningitidis | 0.003 | |
| PRK06995 | 484 | PRK06995, flhF, flagellar biosynthesis regulator F | 0.004 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 0.004 |
| >gnl|CDD|238046 cd00094, HX, Hemopexin-like repeats | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 1e-58
Identities = 81/198 (40%), Positives = 120/198 (60%), Gaps = 6/198 (3%)
Query: 232 PDTCDT-SYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAV 290
PD CD S+DA+ +R E++ FK R+ WR+ G PG P LI FW LP + +DA
Sbjct: 1 PDACDPLSFDAVTTLRGELYFFKGRYFWRL-SPGKPPGSPFLISSFWPSLP---SPVDAA 56
Query: 291 YQRID-NHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLF 349
++R D I FF G +Y+++ G L PGYP+P++ LG P ++++IDAA+ W N KTY F
Sbjct: 57 FERPDTGKIYFFKGDKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFF 116
Query: 350 SGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFFKGKGFWKFKDVS 409
G +YW+ D++T + +P YP+ + ++ GV +D AF+W DG YFFKG +W+F S
Sbjct: 117 KGDKYWRYDEKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFKGDQYWRFDPRS 176
Query: 410 MRVEKEKPSPSAQFWMKC 427
V P + W+ C
Sbjct: 177 KEVRVGYPLKISSDWLGC 194
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; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. Length = 194 |
| >gnl|CDD|214524 smart00120, HX, Hemopexin-like repeats | Back alignment and domain information |
|---|
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215676 pfam00045, Hemopexin, Hemopexin | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215676 pfam00045, Hemopexin, Hemopexin | Back alignment and domain information |
|---|
| >gnl|CDD|215676 pfam00045, Hemopexin, Hemopexin | Back alignment and domain information |
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| >gnl|CDD|214524 smart00120, HX, Hemopexin-like repeats | Back alignment and domain information |
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| >gnl|CDD|214524 smart00120, HX, Hemopexin-like repeats | Back alignment and domain information |
|---|
| >gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214524 smart00120, HX, Hemopexin-like repeats | Back alignment and domain information |
|---|
| >gnl|CDD|215676 pfam00045, Hemopexin, Hemopexin | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
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| >gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
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| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
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| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|218658 pfam05616, Neisseria_TspB, Neisseria meningitidis TspB protein | Back alignment and domain information |
|---|
| >gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 530 | |||
| KOG1565|consensus | 469 | 100.0 | ||
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 100.0 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 100.0 | |
| KOG1565|consensus | 469 | 99.77 | ||
| PF00045 | 45 | Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexi | 99.26 | |
| PF00413 | 154 | Peptidase_M10: Matrixin This Prosite motif covers | 99.22 | |
| cd04278 | 157 | ZnMc_MMP Zinc-dependent metalloprotease, matrix me | 99.21 | |
| smart00120 | 45 | HX Hemopexin-like repeats. Hemopexin is a heme-bin | 99.13 | |
| cd04279 | 156 | ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM | 99.04 | |
| PF00045 | 45 | Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexi | 99.04 | |
| smart00120 | 45 | HX Hemopexin-like repeats. Hemopexin is a heme-bin | 98.76 | |
| cd04268 | 165 | ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_ | 98.56 | |
| smart00235 | 140 | ZnMc Zinc-dependent metalloprotease. Neutral zinc | 97.95 | |
| cd00203 | 167 | ZnMc Zinc-dependent metalloprotease. This super-fa | 97.77 | |
| cd04277 | 186 | ZnMc_serralysin_like Zinc-dependent metalloproteas | 97.49 | |
| PF12388 | 211 | Peptidase_M57: Dual-action HEIGH metallo-peptidase | 96.78 | |
| cd04276 | 197 | ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MM | 95.59 | |
| cd04267 | 192 | ZnMc_ADAM_like Zinc-dependent metalloprotease, ADA | 94.4 | |
| PF05572 | 154 | Peptidase_M43: Pregnancy-associated plasma protein | 94.39 | |
| cd04327 | 198 | ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MM | 94.16 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 93.55 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.45 | |
| PLN02153 | 341 | epithiospecifier protein | 93.15 | |
| COG1913 | 181 | Predicted Zn-dependent proteases [General function | 93.01 | |
| cd04273 | 207 | ZnMc_ADAMTS_like Zinc-dependent metalloprotease, A | 92.87 | |
| PF13574 | 173 | Reprolysin_2: Metallo-peptidase family M12B Reprol | 92.66 | |
| PLN02153 | 341 | epithiospecifier protein | 92.49 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 92.01 | |
| PRK13267 | 179 | archaemetzincin-like protein; Reviewed | 91.94 | |
| PF13583 | 206 | Reprolysin_4: Metallo-peptidase family M12B Reprol | 91.57 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 91.34 | |
| cd04271 | 228 | ZnMc_ADAM_fungal Zinc-dependent metalloprotease, A | 91.29 | |
| cd04275 | 225 | ZnMc_pappalysin_like Zinc-dependent metalloproteas | 91.28 | |
| PLN02193 | 470 | nitrile-specifier protein | 90.95 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 90.92 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 90.85 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 90.75 | |
| cd04269 | 194 | ZnMc_adamalysin_II_like Zinc-dependent metalloprot | 90.67 | |
| PF13688 | 196 | Reprolysin_5: Metallo-peptidase family M12; PDB: 2 | 90.4 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.27 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 90.03 | |
| PF07998 | 194 | Peptidase_M54: Peptidase family M54; InterPro: IPR | 89.76 | |
| cd04270 | 244 | ZnMc_TACE_like Zinc-dependent metalloprotease; TAC | 89.12 | |
| PLN02193 | 470 | nitrile-specifier protein | 89.08 | |
| cd04272 | 220 | ZnMc_salivary_gland_MPs Zinc-dependent metalloprot | 87.49 | |
| cd04280 | 180 | ZnMc_astacin_like Zinc-dependent metalloprotease, | 86.92 | |
| cd04283 | 182 | ZnMc_hatching_enzyme Zinc-dependent metalloproteas | 84.44 | |
| COG5549 | 236 | Predicted Zn-dependent protease [Posttranslational | 84.2 | |
| ) family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01400">PF01400 | 191 | Astacin: Astacin (Peptidase family M12A) This Pros | 83.23 | |
| PF02031 | 132 | Peptidase_M7: Streptomyces extracellular neutral p | 82.46 | |
| COG3824 | 136 | Predicted Zn-dependent protease [General function | 81.6 | |
| PF01421 | 199 | Reprolysin: Reprolysin (M12B) family zinc metallop | 81.19 | |
| cd04281 | 200 | ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1 | 80.94 | |
| cd04282 | 230 | ZnMc_meprin Zinc-dependent metalloprotease, meprin | 80.29 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 80.07 |
| >KOG1565|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=458.27 Aligned_cols=270 Identities=31% Similarity=0.644 Sum_probs=231.6
Q ss_pred CCCCCCCCCCCcccccchhhhhhhhhhhccc-cccCCCCCCCeeeecccCCCCccccCCceeecCCCCCCChhHHHHhhc
Q psy12290 2 LDDGWELPEDDKMAIQSLYGMNHSWATYGHW-ALSFKMTTIEAEFKWFDGGNSTICTNLSTEVLSPRNQRKKEDRIGESQ 80 (530)
Q Consensus 2 ~de~W~~~~~~~~~~~~l~~va~~~HE~GH~-GL~Hs~~~~~iM~p~y~~~~~~~~~~~~~~~l~~~~~~~~dD~~gi~~ 80 (530)
.||.|++. +..|+||++|| +|||||+ ||.||++++|||||+|+... +++.|+ +||+.|||+
T Consensus 197 ~dE~Wt~~---~~~g~~l~~Va--~HEiGH~LGL~HS~~~~aiM~P~y~~~~-------~~~~L~------~DDv~giq~ 258 (469)
T KOG1565|consen 197 KDETWTYG---DSNGVDLFLVA--AHEIGHALGLGHSSDPDAIMYPFYQPDS-------GNFDLS------QDDVRGIQH 258 (469)
T ss_pred cccceecc---CCccchhHHHh--hhhcccccccCCCCCcccccccccccCC-------CCcccC------hhhhhhhHH
Confidence 68999996 35699999999 9999999 99999999999999999732 258888 999999999
Q ss_pred cccccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy12290 81 PFRERTLSICDRKEEKSWAVIPRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRRE 160 (530)
Q Consensus 81 ly~~~~~~~~G~~~~~~~~~~~~~~~~~~~tt~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (530)
|| |.... +. .+ +.
T Consensus 259 lY--------G~~~~--~~------~~-----------------------------~~---------------------- 271 (469)
T KOG1565|consen 259 LY--------GGPPR--DY------FM-----------------------------PS---------------------- 271 (469)
T ss_pred Hh--------CCCcc--cc------cc-----------------------------cc----------------------
Confidence 99 74210 00 00 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcce
Q psy12290 161 PSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDTCDTSYD 240 (530)
Q Consensus 161 p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~p~~t~~~~~~~~~~~~pd~C~~~fD 240 (530)
.+ ..+. + . ++...+..|+..||
T Consensus 272 -------------------------~~--~~~~-p-------------------~-----------~~~~~~~~~s~~fd 293 (469)
T KOG1565|consen 272 -------------------------GQ--RNPT-P-------------------S-----------SSGPEPSRCSGHFD 293 (469)
T ss_pred -------------------------cc--CCCC-C-------------------C-----------CCCCCCCcCCCCcc
Confidence 00 0000 0 0 00123577888999
Q ss_pred eeEEeC-CEEEEEECCeEEEEcCCCccCCCceecccccccCCCCCccccceEEeeCCcEEEEEceeEEEecceecCCCCC
Q psy12290 241 AIAVIR-TEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAVYQRIDNHIAFFIGRQYFLFEGIRLLPGYP 319 (530)
Q Consensus 241 Avt~ir-GeiyfFKG~~~WR~~~~~~~~gyP~~Is~~WpGLP~~~~~IDAAye~~~gktyFFKG~~yW~y~~~~l~~GYP 319 (530)
||++++ |++||||+++|||+.... +.++|.+|+++|+|||.. |||||+ .++++|||||++||+|.+.++..|||
T Consensus 294 av~~~~~g~~~ffk~~~~Wr~~~~~-~~~~p~~I~~~w~glP~~---vdAa~e-~~~~~~ffkg~~~w~~~~~~~~~gyp 368 (469)
T KOG1565|consen 294 AVTTDRHGETYFFKGRHFWRLTTSG-DGREPRPISRFWPGLPGA---VDAAYE-WDGKIYFFKGAQFWSYAGYTLVPGYP 368 (469)
T ss_pred eEeeccccceEEecCceeEeeeccC-cCCCcccHhhcCCCCcch---hhhhhh-ccCcEEEecCCeeEEEecccccCCCC
Confidence 999987 999999999999999887 778999999999999986 999999 89999999999999999999999999
Q ss_pred ccccc-CCCCCcccccccEEEeccCCeEEEeeCCeEEEEeCCCCcccCCCCcccccCCCCCCCCCCEEEecCCCcEEEEE
Q psy12290 320 RPLTA-LGLPASLERIDAAMVWGYNSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFFK 398 (530)
Q Consensus 320 K~Is~-~GlP~~~~~IDAAf~~~~ngktYFFkG~~YWryde~~~~vd~gYPk~Is~~w~GvP~~IDAAf~~~~G~~YFFk 398 (530)
|.|.+ .|++..+. ||||+.|..++++|||+|++|||||+..+.|+.+||+.|. .|+|+ +||+++ .++.+|||+
T Consensus 369 r~l~~~~~~~~~~~-idaa~~~~~~~kt~ff~g~~~wr~d~~~~~~d~~~p~~~~-~~~gi---~~a~~~-~~~~~Yff~ 442 (469)
T KOG1565|consen 369 KKLYRSVGFPPRGR-IDAARFWPANGKTYFFSGRRYWRYDEKSRAMDWGYPKWIH-KFPGI---GDASFS-NGGSVYFFS 442 (469)
T ss_pred cchhhccccCCCCc-eeeeEeccCCCceEEEecceeeeehhhhcccccCCCcchh-hccCc---cchhhh-cCceEEEEe
Confidence 99998 46776656 9999999999999999999999999999999999999999 99999 999999 667999999
Q ss_pred CCeEEEEecccceeeccCCCcccccccCCC
Q psy12290 399 GKGFWKFKDVSMRVEKEKPSPSAQFWMKCP 428 (530)
Q Consensus 399 G~~Ywrfd~~~~~V~~~yPr~ia~~W~gCp 428 (530)
|++||+||....+|+.+||+++ ||+|+
T Consensus 443 g~~y~~~d~~~~~v~~~~~~~~---wl~C~ 469 (469)
T KOG1565|consen 443 GPKYYRYDDRNLRVEPPYPRNI---WLGCT 469 (469)
T ss_pred CCeeEeeCchHhhccccCCcce---eccCC
Confidence 9999999999999999999987 99996
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
| >KOG1565|consensus | Back alignment and domain information |
|---|
| >PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3 | Back alignment and domain information |
|---|
| >PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site | Back alignment and domain information |
|---|
| >cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family | Back alignment and domain information |
|---|
| >smart00120 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
| >cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1 | Back alignment and domain information |
|---|
| >PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3 | Back alignment and domain information |
|---|
| >smart00120 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
| >cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily | Back alignment and domain information |
|---|
| >smart00235 ZnMc Zinc-dependent metalloprotease | Back alignment and domain information |
|---|
| >cd00203 ZnMc Zinc-dependent metalloprotease | Back alignment and domain information |
|---|
| >cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily | Back alignment and domain information |
|---|
| >PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57 | Back alignment and domain information |
|---|
| >cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2 | Back alignment and domain information |
|---|
| >cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup | Back alignment and domain information |
|---|
| >PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3 | Back alignment and domain information |
|---|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
| >COG1913 Predicted Zn-dependent proteases [General function prediction only] | Back alignment and domain information |
|---|
| >cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup | Back alignment and domain information |
|---|
| >PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A | Back alignment and domain information |
|---|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
| >PRK13267 archaemetzincin-like protein; Reviewed | Back alignment and domain information |
|---|
| >PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like | Back alignment and domain information |
|---|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
| >cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup | Back alignment and domain information |
|---|
| >cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily | Back alignment and domain information |
|---|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily | Back alignment and domain information |
|---|
| >PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B | Back alignment and domain information |
|---|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
| >PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily | Back alignment and domain information |
|---|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
| >cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs | Back alignment and domain information |
|---|
| >cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site | Back alignment and domain information |
|---|
| >cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily | Back alignment and domain information |
|---|
| >COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site | Back alignment and domain information |
|---|
| >PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >COG3824 Predicted Zn-dependent protease [General function prediction only] | Back alignment and domain information |
|---|
| >PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site | Back alignment and domain information |
|---|
| >cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily | Back alignment and domain information |
|---|
| >cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily | Back alignment and domain information |
|---|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 530 | ||||
| 3c7x_A | 196 | Hemopexin-Like Domain Of Matrix Metalloproteinase 1 | 4e-32 | ||
| 1rtg_A | 210 | C-terminal Domain (haemopexin-like Domain) Of Human | 2e-28 | ||
| 1gen_A | 218 | C-Terminal Domain Of Gelatinase A Length = 218 | 2e-28 | ||
| 1ck7_A | 631 | Gelatinase A (Full-Length) Length = 631 | 3e-28 | ||
| 1pex_A | 207 | Collagenase-3 (Mmp-13) C-Terminal Hemopexin-Like Do | 1e-24 | ||
| 1su3_A | 450 | X-Ray Structure Of Human Prommp-1: New Insights Int | 6e-21 | ||
| 2clt_A | 367 | Crystal Structure Of The Active Form (Full-Length) | 1e-20 | ||
| 2jxy_A | 194 | Solution Structure Of The Hemopexin-Like Domain Of | 4e-19 | ||
| 3ba0_A | 365 | Crystal Structure Of Full-Length Human Mmp-12 Lengt | 6e-19 | ||
| 1fbl_A | 370 | Structure Of Full-Length Porcine Synovial Collagena | 4e-17 | ||
| 1itv_A | 195 | Dimeric Form Of The Haemopexin Domain Of Mmp9 Lengt | 8e-16 |
| >pdb|3C7X|A Chain A, Hemopexin-Like Domain Of Matrix Metalloproteinase 14 Length = 196 | Back alignment and structure |
|
| >pdb|1RTG|A Chain A, C-terminal Domain (haemopexin-like Domain) Of Human Matrix Metalloproteinase-2 Length = 210 | Back alignment and structure |
| >pdb|1GEN|A Chain A, C-Terminal Domain Of Gelatinase A Length = 218 | Back alignment and structure |
| >pdb|1CK7|A Chain A, Gelatinase A (Full-Length) Length = 631 | Back alignment and structure |
| >pdb|1PEX|A Chain A, Collagenase-3 (Mmp-13) C-Terminal Hemopexin-Like Domain Length = 207 | Back alignment and structure |
| >pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into Collagenase Action Length = 450 | Back alignment and structure |
| >pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of Human Fibroblast Collagenase. Length = 367 | Back alignment and structure |
| >pdb|2JXY|A Chain A, Solution Structure Of The Hemopexin-Like Domain Of Mmp12 Length = 194 | Back alignment and structure |
| >pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12 Length = 365 | Back alignment and structure |
| >pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase (Mmp1) Reveals A C-Terminal Domain Containing A Calcium-Linked, Four-Bladed Beta- Propeller Length = 370 | Back alignment and structure |
| >pdb|1ITV|A Chain A, Dimeric Form Of The Haemopexin Domain Of Mmp9 Length = 195 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 4e-66
Identities = 75/198 (37%), Positives = 117/198 (59%), Gaps = 5/198 (2%)
Query: 232 PDTCDTSYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAVY 291
P+ CD ++D +A++R E+FVFK+RW WR+ + V+ GYP+ I QFW LP I+ Y
Sbjct: 1 PNICDGNFDTVAMLRGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPA---SINTAY 57
Query: 292 QRIDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLFSG 351
+R D FF G ++++F+ L PGYP+ + LG ++IDAA+ W N KTY F G
Sbjct: 58 ERKDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG 117
Query: 352 TRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGA-TYFFKGKGFWKFKDVSM 410
+Y++ ++E + +YP+N+ W G+ +F D TYF+KG +WKF + +
Sbjct: 118 NKYYRFNEELRAVDSEYPKNIKV-WEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKL 176
Query: 411 RVEKEKPSPSAQFWMKCP 428
+VE P + + WM CP
Sbjct: 177 KVEPGYPKSALRDWMGCP 194
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A Length = 218 | Back alignment and structure |
|---|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 Length = 195 | Back alignment and structure |
|---|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 Length = 207 | Back alignment and structure |
|---|
| >1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Length = 631 | Back alignment and structure |
|---|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Length = 365 | Back alignment and structure |
|---|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* Length = 450 | Back alignment and structure |
|---|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 Length = 219 | Back alignment and structure |
|---|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Length = 460 | Back alignment and structure |
|---|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Length = 460 | Back alignment and structure |
|---|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Length = 225 | Back alignment and structure |
|---|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Length = 225 | Back alignment and structure |
|---|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Length = 225 | Back alignment and structure |
|---|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Length = 225 | Back alignment and structure |
|---|
| >3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 3s18_A Length = 227 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 530 | |||
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 100.0 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 100.0 | |
| 1ck7_A | 631 | Protein (gelatinase A); hydrolase (metalloprotease | 100.0 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 100.0 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 100.0 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 100.0 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 100.0 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 100.0 | |
| 1hxn_A | 219 | Hemopexin, HPX; heme, binding protein; 1.80A {Oryc | 100.0 | |
| 3lp9_A | 227 | LS-24; SEED albumin, plant protein; HET: SPM; 2.20 | 100.0 | |
| 3oyo_A | 225 | Hemopexin fold protein CP4; seeds, plant protein; | 100.0 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 100.0 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 100.0 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 100.0 | |
| 3lp9_A | 227 | LS-24; SEED albumin, plant protein; HET: SPM; 2.20 | 99.98 | |
| 3oyo_A | 225 | Hemopexin fold protein CP4; seeds, plant protein; | 99.97 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 99.97 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 99.97 | |
| 1hxn_A | 219 | Hemopexin, HPX; heme, binding protein; 1.80A {Oryc | 99.96 | |
| 1ck7_A | 631 | Protein (gelatinase A); hydrolase (metalloprotease | 99.96 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 99.95 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 99.93 | |
| 3ma2_D | 181 | Matrix metalloproteinase-14; protein - protein com | 99.5 | |
| 830c_A | 168 | MMP-13, MMP-13; matrix metalloprotease; HET: RS1; | 99.49 | |
| 2ovx_A | 159 | Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) | 99.42 | |
| 2xs4_A | 167 | Karilysin protease; hydrolase, bacterial MMP, viru | 99.35 | |
| 2jsd_A | 160 | Matrix metalloproteinase-20; MMP-NNGH, structural | 99.34 | |
| 1y93_A | 159 | Macrophage metalloelastase; matrix metalloproteina | 99.31 | |
| 1i76_A | 163 | MMP-8;, neutrophil collagenase; hydrolase, complex | 99.31 | |
| 1eak_A | 421 | 72 kDa type IV collagenase; hydrolase-hydrolase in | 99.3 | |
| 1l6j_A | 425 | Matrix metalloproteinase-9; twisted beta sheet fla | 99.29 | |
| 1rm8_A | 169 | MMP-16, matrix metalloproteinase-16, MT3-MMP; memb | 99.29 | |
| 1cge_A | 168 | Fibroblast collagenase; hydrolase (metalloprotease | 99.28 | |
| 1hv5_A | 165 | Stromelysin 3; inhibition, phosphinic inhibitor, h | 99.28 | |
| 1hy7_A | 173 | Stromelysin-1, MMP-3; mixed alpha beta structure, | 99.27 | |
| 3ayu_A | 167 | 72 kDa type IV collagenase; protease, hydrolase-hy | 99.27 | |
| 2y6d_A | 174 | Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapie | 99.27 | |
| 1slm_A | 255 | Stromelysin-1; hydrolase, metalloprotease, fibrobl | 99.27 | |
| 1sat_A | 471 | Serratia protease; parallel beta helix, parallel b | 98.67 | |
| 1k7i_A | 479 | PROC, secreted protease C; metalloprotease, hydrol | 98.58 | |
| 1kap_P | 479 | Alkaline protease; calcium binding protein, zinc m | 98.57 | |
| 1g9k_A | 463 | Serralysin; beta jelly roll, hydrolase; 1.96A {Pse | 98.38 | |
| 1c7k_A | 132 | NCNP, zinc endoprotease; alpha and beta protein, m | 98.3 | |
| 3p24_A | 397 | BFT-3; metzincins, metalloendopeptidase, hydrolase | 98.29 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.35 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.04 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 94.89 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.77 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.69 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.65 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.62 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.56 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 94.52 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 94.42 | |
| 4axq_A | 163 | Archaemetzincin; metalloprotease, protease, hydrol | 94.27 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 93.92 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 93.85 | |
| 2x7m_A | 195 | Archaemetzincin; metalloprotease, protease, hydrol | 93.78 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.59 | |
| 3lqb_A | 199 | Hatching enzyme, LOC792177 protein; hydrolase, met | 93.31 | |
| 1qua_A | 197 | Acutolysin-C, hemorrhagin III; metalloprotease, he | 93.21 | |
| 3lmc_A | 210 | Peptidase, zinc-dependent; structural genomics, PS | 92.8 | |
| 1yp1_A | 202 | FII; FII hydrolase; 1.90A {Deinagkistrodon acutus} | 92.68 | |
| 2cki_A | 262 | Ulilysin; metalloprotease, hydrolase; HET: ARG; 1. | 92.64 | |
| 2w15_A | 202 | Zinc metalloproteinase BAP1; hydrolase inhibitor c | 92.39 | |
| 1kuf_A | 203 | Atrolysin E, metalloproteinase; alpha/beta protein | 92.25 | |
| 1bud_A | 197 | Protein (acutolysin A); metalloproteinase, snake v | 92.21 | |
| 3b8z_A | 217 | Protein adamts-5; alpha/beta, hydrolase; HET: 294; | 91.71 | |
| 2dw0_A | 419 | Catrocollastatin; apoptotic toxin, SVMP, metallopr | 91.36 | |
| 2e3x_A | 427 | Coagulation factor X-activating enzyme light CHAI; | 91.11 | |
| 2v4b_A | 300 | Adamts-1; zymogen, protease, hydrolase, metallopro | 91.09 | |
| 1r55_A | 214 | ADAM 33; metalloprotease, inhibitor, asthma, hydro | 90.95 | |
| 2rjq_A | 378 | Adamts-5; metalloprotease domain, aggrecanase, cle | 90.89 | |
| 2rjp_A | 316 | Adamts-4; metalloprotease domain, aggrecanase, cle | 90.57 | |
| 2ero_A | 427 | VAP-1, vascular apoptosis-inducing protein 1; meta | 90.41 | |
| 1atl_A | 202 | Atrolysin C; metalloendopeptidase, hydrolase-hydro | 89.93 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 89.52 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 89.12 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 87.88 | |
| 2ddf_A | 257 | ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapi | 87.09 | |
| 2i47_A | 288 | ADAM 17; TACE-inhibitor complex, hydrolase; HET: I | 85.38 | |
| 3k7n_A | 397 | K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A { | 85.12 | |
| 4dd8_A | 208 | Disintegrin and metalloproteinase domain-containi | 83.09 | |
| 3k7l_A | 422 | Atragin; SVMP, metalloprotease, hydrolase; HET: NA | 81.04 |
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-62 Score=512.78 Aligned_cols=268 Identities=26% Similarity=0.536 Sum_probs=232.3
Q ss_pred CCCCCCCCCCCcccccchhhhhhhhhhhccc-cccCCCCCCCeeeecccCCCCccccCCceeecCCCCCCChhHHHHhhc
Q psy12290 2 LDDGWELPEDDKMAIQSLYGMNHSWATYGHW-ALSFKMTTIEAEFKWFDGGNSTICTNLSTEVLSPRNQRKKEDRIGESQ 80 (530)
Q Consensus 2 ~de~W~~~~~~~~~~~~l~~va~~~HE~GH~-GL~Hs~~~~~iM~p~y~~~~~~~~~~~~~~~l~~~~~~~~dD~~gi~~ 80 (530)
.+|.|++.. .|.+|+.|| +|||||+ ||.|+.+..|||||+|+.... ..+.|+ .|||.+||+
T Consensus 94 ~~e~w~~~~----~g~~~~~~~--~HE~gH~lGl~h~~~~~svM~p~~~~~~~------~~~~l~------~~Di~~iq~ 155 (365)
T 3ba0_A 94 EDEFWTTHS----GGTNLFLTA--VHEIGHSLGLGHSSDPKAVMFPTYKYVDI------NTFRLS------ADDIRGIQS 155 (365)
T ss_dssp TTSCEESSS----SSEESSHHH--HHHHHHHHTCCCCSCTTTTTSSSCCCCCS------SSCCCC------HHHHHHHHS
T ss_pred CCCCcccCC----Ccccceeeh--hhhhhhhhcCCCCCccccceeeeeccccC------ccCCCC------HHHHHHHHH
Confidence 367787742 578999999 9999999 999999999999999986322 246777 999999999
Q ss_pred cccccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy12290 81 PFRERTLSICDRKEEKSWAVIPRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRRE 160 (530)
Q Consensus 81 ly~~~~~~~~G~~~~~~~~~~~~~~~~~~~tt~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (530)
|| |.+. | ..
T Consensus 156 lY--------g~~~--------------------~---------------------~~---------------------- 164 (365)
T 3ba0_A 156 LY--------GDPK--------------------E---------------------NQ---------------------- 164 (365)
T ss_dssp SS--------CSCS--------------------S---------------------SC----------------------
T ss_pred hh--------CCCC--------------------C---------------------CC----------------------
Confidence 99 7200 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC--c
Q psy12290 161 PSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDTCDT--S 238 (530)
Q Consensus 161 p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~p~~t~~~~~~~~~~~~pd~C~~--~ 238 (530)
| . .| + .+..|+.|+. +
T Consensus 165 ---------~-------------------~---~p-----------------------~--------~~~~p~~C~~~~~ 182 (365)
T 3ba0_A 165 ---------R-------------------L---PN-----------------------P--------DNSEPALCDPNLS 182 (365)
T ss_dssp ---------C-------------------S---SC-----------------------C--------CCCSSCTTCTTCC
T ss_pred ---------C-------------------C---CC-----------------------C--------CCCCCcccCCCCc
Confidence 0 0 00 0 0123688997 8
Q ss_pred ceeeEEeCCEEEEEECCeEEEEcCCCccCCCceecccccccCCCCCccccceEEee-CCcEEEEEceeEEEecceecCCC
Q psy12290 239 YDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAVYQRI-DNHIAFFIGRQYFLFEGIRLLPG 317 (530)
Q Consensus 239 fDAvt~irGeiyfFKG~~~WR~~~~~~~~gyP~~Is~~WpGLP~~~~~IDAAye~~-~gktyFFKG~~yW~y~~~~l~~G 317 (530)
||||++++|++|||||++|||++......+ |.+|+++|||||.. |||||+.. ++++|||||++||+|++.+++.|
T Consensus 183 fDAv~~~~g~~~fFkg~~~Wr~~~~~~~~~-p~~I~~~wpgLP~~---iDAa~~~~~~g~~~fFkg~~yWr~~~~~~~~g 258 (365)
T 3ba0_A 183 FDAVTTVGNKIFFFKDRFFWLKVSERPKTS-VNLISSLWPTLPSG---IEAAYEIEARNQVFLFKDDKYWLISNLRPEPN 258 (365)
T ss_dssp CSCEEEETTEEEEEETTEEEECCSSCCCCC-EEEHHHHCSSCCSS---CCEEEEEGGGTEEEEEETTEEEECSTTSCTTT
T ss_pred eeeEEEcCCeEEEEeCCEEEEEcCCCccCC-ccchhhhccCCCCC---ccEEEEecCCCEEEEEeCCEEEEEcCCcccCC
Confidence 999999999999999999999997765554 99999999999975 99999984 89999999999999999889999
Q ss_pred CCcccccCCCCCcccccccEEEeccCCeEEEeeCCeEEEEeCCCCcccCCCCcccccCCCCCCCCCCEEEecCCCcEEEE
Q psy12290 318 YPRPLTALGLPASLERIDAAMVWGYNSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFF 397 (530)
Q Consensus 318 YPK~Is~~GlP~~~~~IDAAf~~~~ngktYFFkG~~YWryde~~~~vd~gYPk~Is~~w~GvP~~IDAAf~~~~G~~YFF 397 (530)
|||.|+++|||..+++|||||+|..++++|||||++||+||+.+++|++||||.|++.|+|||.+|||||++.+|++|||
T Consensus 259 yPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~~yw~yd~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfF 338 (365)
T 3ba0_A 259 YPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDNQYWRYDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFF 338 (365)
T ss_dssp CSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETTEEEEEETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEE
T ss_pred CCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECCEEEEEeCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEE
Confidence 99999999999888899999999888999999999999999998899999999999899999999999999988999999
Q ss_pred ECCeEEEEecccceeeccCCCcccccccCC
Q psy12290 398 KGKGFWKFKDVSMRVEKEKPSPSAQFWMKC 427 (530)
Q Consensus 398 kG~~Ywrfd~~~~~V~~~yPr~ia~~W~gC 427 (530)
+|++|||||..+++|+. +.++..||+|
T Consensus 339 kg~~ywr~d~~~~~v~~---~~~~~~w~~C 365 (365)
T 3ba0_A 339 QGSNQFEYDFLLQRITK---TLKSNSWFGC 365 (365)
T ss_dssp ETTEEEEEETTTTEEEE---EEETTTTTTC
T ss_pred eCCEEEEEECCccEEec---cccCCcCCCC
Confidence 99999999999999986 5567899999
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
| >1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A | Back alignment and structure |
|---|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 | Back alignment and structure |
|---|
| >3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A | Back alignment and structure |
|---|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} | Back alignment and structure |
|---|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
| >3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A | Back alignment and structure |
|---|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} | Back alignment and structure |
|---|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 | Back alignment and structure |
|---|
| >1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A | Back alignment and structure |
|---|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
| >3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M | Back alignment and structure |
|---|
| >830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ... | Back alignment and structure |
|---|
| >2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A* | Back alignment and structure |
|---|
| >2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A | Back alignment and structure |
|---|
| >2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ... | Back alignment and structure |
|---|
| >1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ... | Back alignment and structure |
|---|
| >1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A | Back alignment and structure |
|---|
| >1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 | Back alignment and structure |
|---|
| >1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11 | Back alignment and structure |
|---|
| >1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A | Back alignment and structure |
|---|
| >1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11 | Back alignment and structure |
|---|
| >1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ... | Back alignment and structure |
|---|
| >3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A* | Back alignment and structure |
|---|
| >2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A* | Back alignment and structure |
|---|
| >1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 | Back alignment and structure |
|---|
| >1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A | Back alignment and structure |
|---|
| >1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P | Back alignment and structure |
|---|
| >1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A | Back alignment and structure |
|---|
| >1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P | Back alignment and structure |
|---|
| >1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A | Back alignment and structure |
|---|
| >3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
| >4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A* | Back alignment and structure |
|---|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri} | Back alignment and structure |
|---|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio} | Back alignment and structure |
|---|
| >1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9 | Back alignment and structure |
|---|
| >3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, MUR16; 2.00A {Methanocorpusculum labreanum} | Back alignment and structure |
|---|
| >1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus} | Back alignment and structure |
|---|
| >2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A* | Back alignment and structure |
|---|
| >2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A | Back alignment and structure |
|---|
| >1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A | Back alignment and structure |
|---|
| >1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A | Back alignment and structure |
|---|
| >3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A* | Back alignment and structure |
|---|
| >2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A* | Back alignment and structure |
|---|
| >2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis} | Back alignment and structure |
|---|
| >2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A* | Back alignment and structure |
|---|
| >1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A* | Back alignment and structure |
|---|
| >2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A | Back alignment and structure |
|---|
| >2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A* | Back alignment and structure |
|---|
| >1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A | Back alignment and structure |
|---|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
| >2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ... | Back alignment and structure |
|---|
| >2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A* | Back alignment and structure |
|---|
| >3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra} | Back alignment and structure |
|---|
| >4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 530 | ||||
| d1gena_ | 200 | b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal dom | 1e-55 | |
| d1pexa_ | 192 | b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal d | 6e-54 | |
| d1itva_ | 195 | b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sa | 4e-53 | |
| d1su3a2 | 195 | b.66.1.1 (A:271-465) Collagenase (MMP1), C-termina | 6e-50 | |
| d1qhua1 | 192 | b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus | 4e-44 | |
| d1hxna_ | 210 | b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cunic | 3e-40 |
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 200 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 183 bits (464), Expect = 1e-55
Identities = 67/204 (32%), Positives = 108/204 (52%), Gaps = 8/204 (3%)
Query: 227 GPSDKPDTCDT--SYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNL 284
GP P+ C +D IA IR E+F FKDR++WR P P+L+ FW ELP +
Sbjct: 2 GPVT-PEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKI 60
Query: 285 THIDAVYQRIDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNS 344
+ FF G +Y+++ L GYP+PLT+LGLP ++R+DAA W N
Sbjct: 61 D--AVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNK 118
Query: 345 KTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQW-KDGATYFFKGKGFW 403
KTY+F+G ++W+ ++ + +P +P+ + + W + ++D G +YFFKG +
Sbjct: 119 KTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYL 178
Query: 404 KFKDVSMRVEKEKPSPSAQFWMKC 427
K ++ S++ K W+ C
Sbjct: 179 KLENQSLKS--VKFGSIKSDWLGC 200
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Length = 195 | Back information, alignment and structure |
|---|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 195 | Back information, alignment and structure |
|---|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 192 | Back information, alignment and structure |
|---|
| >d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 210 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 530 | |||
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 100.0 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 100.0 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 100.0 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 100.0 | |
| d1hxna_ | 210 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 100.0 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 99.96 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 99.95 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 99.95 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 99.95 | |
| d1hxna_ | 210 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 99.94 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 99.94 | |
| d1xuca1 | 169 | Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxI | 99.4 | |
| d1hv5a_ | 162 | Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxI | 99.33 | |
| d1rm8a_ | 169 | Matrix metalloproteinase-16 (MMP-16) {Human (Homo | 99.32 | |
| d1mmqa_ | 166 | Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9 | 99.3 | |
| d1i76a_ | 163 | Neutrophil collagenase (MMP-8) {Human (Homo sapien | 99.28 | |
| d1bqqm_ | 174 | Membrane-type matrix metalloproteinase (CDMT1-MMP) | 99.26 | |
| d2ovxa1 | 159 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 99.23 | |
| d1qiba_ | 161 | Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} | 99.23 | |
| d1y93a1 | 158 | Macrophage elastase (MMP-12) {Human (Homo sapiens) | 99.22 | |
| d1hfca_ | 157 | Fibroblast collagenase (MMP-1) {Human (Homo sapien | 99.19 | |
| d1hy7a_ | 168 | Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro | 99.18 | |
| d1kapp2 | 246 | Metalloprotease {Pseudomonas aeruginosa [TaxId: 28 | 98.38 | |
| d1g9ka2 | 242 | Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId | 98.19 | |
| d1sata2 | 243 | Metalloprotease {Serratia marcescens [TaxId: 615]} | 98.11 | |
| d1k7ia2 | 241 | Metalloprotease {Erwinia chrysanthemi [TaxId: 556] | 98.09 | |
| d1bswa_ | 197 | Snake venom metalloprotease {Five-pace snake (Agki | 93.62 | |
| d1kufa_ | 201 | Snake venom metalloprotease {Taiwan habu (Trimeres | 92.72 | |
| d1atla_ | 200 | Snake venom metalloprotease {Western diamonback ra | 92.48 | |
| d1nd1a_ | 202 | Snake venom metalloprotease {Terciopelo (Bothrops | 92.26 | |
| d2i47a1 | 254 | TNF-alpha converting enzyme, TACE, catalytic domai | 91.74 | |
| d1r55a_ | 203 | ADAM33 {Human (Homo sapiens) [TaxId: 9606]} | 90.62 | |
| d1quaa_ | 197 | Snake venom metalloprotease {Chinese five-pace sna | 89.95 | |
| d1asta_ | 200 | Astacin {European fresh water crayfish (Astacus as | 83.92 | |
| d1c7ka_ | 132 | Zinc protease {Streptomyces caespitosus [TaxId: 53 | 82.0 |
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-51 Score=395.22 Aligned_cols=192 Identities=36% Similarity=0.856 Sum_probs=179.4
Q ss_pred CCCCCCC--cceeeEEeCCEEEEEECCeEEEEcCCCccCCCceecccccccCCCCCccccceEEee-CCcEEEEEceeEE
Q psy12290 231 KPDTCDT--SYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAVYQRI-DNHIAFFIGRQYF 307 (530)
Q Consensus 231 ~pd~C~~--~fDAvt~irGeiyfFKG~~~WR~~~~~~~~gyP~~Is~~WpGLP~~~~~IDAAye~~-~gktyFFKG~~yW 307 (530)
.|+.|+. +||||++++|++|||||++|||++..+...++|++|+++|+|||.+ |||||++. ++++|||||++||
T Consensus 5 ~P~~C~~~~~fDAv~~~~G~~y~Fkg~~~wr~~~~~~~~~~P~~I~~~w~glp~~---IdAA~~~~~~~~~yffkg~~~~ 81 (200)
T d1gena_ 5 TPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEK---IDAVYEAPQEEKAVFFAGNEYW 81 (200)
T ss_dssp CCCTTTSCCCCSEEEEETTEEEEEETTEEEEESSTTSCCEEEEEGGGTCTTSCSC---CSEEEEETTTTEEEEEETTEEE
T ss_pred CCCCCCCCCCEeEEEecCCeEEEEeCCEEEEEcCCCCCCCCcEehhhccCCCCCC---ceEEEEECCCCeEEEecCceEE
Confidence 4799996 5999999999999999999999988776778999999999999986 99999974 7899999999999
Q ss_pred EecceecCCCCCcccccCCCCCcccccccEEEeccCCeEEEeeCCeEEEEeCCCCcccCCCCcccccCCCCCCCCCCEEE
Q psy12290 308 LFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAF 387 (530)
Q Consensus 308 ~y~~~~l~~GYPK~Is~~GlP~~~~~IDAAf~~~~ngktYFFkG~~YWryde~~~~vd~gYPk~Is~~w~GvP~~IDAAf 387 (530)
+|++.+++.||||.|+++|+|..+++|||||.|..+|++|||||++||+||+.+++|+.+|||.|++.|+|||.+|||||
T Consensus 82 ~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg~~y~ryd~~~~~vd~~yPk~I~~~w~gvp~~idAAf 161 (200)
T d1gena_ 82 IYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVV 161 (200)
T ss_dssp EEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETTEEEEEETTTTEECSSCCEEHHHHSSSCCSSCSEEE
T ss_pred EEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeCcEEEEeccccceeccCcceehhhccCCCCCCccEEE
Confidence 99999999999999999999988899999999988999999999999999999999999999999999999999999999
Q ss_pred ecC-CCcEEEEECCeEEEEecccceeeccCCCcccccccCC
Q psy12290 388 QWK-DGATYFFKGKGFWKFKDVSMRVEKEKPSPSAQFWMKC 427 (530)
Q Consensus 388 ~~~-~G~~YFFkG~~Ywrfd~~~~~V~~~yPr~ia~~W~gC 427 (530)
++. +|++|||+|++|||||..+++++. |++++.+||+|
T Consensus 162 ~~~~~g~~Yff~g~~y~r~d~~~~~~~~--p~~i~~~w~~C 200 (200)
T d1gena_ 162 DLQGGGHSYFFKGAYYLKLENQSLKSVK--FGSIKSDWLGC 200 (200)
T ss_dssp ECTTTCEEEEEETTEEEEEETTEEEEEE--EEEHHHHTSCC
T ss_pred EecCCCEEEEEECCEEEEEECCceEEcc--CccccccccCC
Confidence 985 799999999999999988777754 77888899999
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
| >d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
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| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
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| >d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]} | Back information, alignment and structure |
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| >d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId: 306]} | Back information, alignment and structure |
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| >d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
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| >d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
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| >d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]} | Back information, alignment and structure |
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| >d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]} | Back information, alignment and structure |
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| >d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]} | Back information, alignment and structure |
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| >d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo (Bothrops asper), bap1 [TaxId: 8722]} | Back information, alignment and structure |
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| >d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]} | Back information, alignment and structure |
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| >d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]} | Back information, alignment and structure |
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| >d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus [TaxId: 53502]} | Back information, alignment and structure |
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