Psyllid ID: psy12302

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
DVRICIEPILLEKQLCYQIDTNVSFFFVFQDATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSFIT
cccccccccccccccccccccccEEEEEEcccccccEEEcccEEEEcccHHHHHHHHHHHHcEEcccccccHHHHEEccEEEEEccccccccccccEEEEccccccccccEEEEEccccccccHHHHHHHHHHcccccccccEEccccccccccccHHHHHHHHHHHHHccEEEEccccccHHHHHHHHHHccccccccccccccccEEEEEcEEEccccccccccccEEEEEEEccccccccccEEEcccEEEEEEEEcccccEEEEEEEEEccccEEEEEcccHHHHHHHHHHHHHHHHcc
ccEEEEcHHHHHHHHHHHHHcccEEEEEEcccccccEEccccEEEEEccHHHHHHHHHHHHHcccccEEcEHEEEEEcccHHEEcccccccccccEEEEccccccccHcHHHHHHHHHHcccEEHHHHHHHccccEEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccHHHHHHHHHccEEEEEEccccccccccccccccEEEEEEcccHHHHcEEEEEcccEEEEEEEEEccccEEEEEEEEEcccEEEEEEEEEHHHHHHHHHHHHHHHHcc
dvriciepILLEKQLCYQIDTNVSFFFVFqdatdsrivaknpvvemdgdEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQafllfpekseemnlewikipclqcsdkakMFFLSSSLKHGFMYFMASRIQIISNIIDVeclyydlglphrdatedqVTVDAAVAIKKhnvgikcatitpdeARVKEFKlkkmwlspngtirnilggtvfrepiicknipkivpgwtnsivigrhahgdqykatdlivdkpgkvelvytdnqgkvqTFKVFEFKTPGVALAMYNTTESIESFahssfqvsfit
DVRICIEPILLEKQLCYQIDTNVSFFFVFQDatdsrivaknpvvemdgdEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKkhnvgikcatitpdeARVKEFklkkmwlspngtirnilggtvFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIesfahssfqvsfit
DVRICIEPILLEKQLCYQIDTNVSFFFVFQDATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSFIT
**RICIEPILLEKQLCYQIDTNVSFFFVFQDATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFA**********
*******PILLEKQLCY*I******************VAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL***WLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSFIT
DVRICIEPILLEKQLCYQIDTNVSFFFVFQDATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSFIT
DVRICIEPILLEKQLCYQIDTNVSFFFVFQDATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSFIT
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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DVRICIEPILLEKQLCYQIDTNVSFFFVFQDATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSFIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query303 2.2.26 [Sep-21-2011]
P79089 498 Isocitrate dehydrogenase no N/A 0.574 0.349 0.649 1e-64
O13285 430 Isocitrate dehydrogenase N/A N/A 0.564 0.397 0.651 4e-64
Q75JR2 428 Isocitrate dehydrogenase yes N/A 0.541 0.383 0.664 2e-63
P54071 452 Isocitrate dehydrogenase yes N/A 0.541 0.362 0.666 3e-63
P56574 452 Isocitrate dehydrogenase yes N/A 0.541 0.362 0.666 5e-63
Q4R502 452 Isocitrate dehydrogenase N/A N/A 0.541 0.362 0.648 1e-62
P48735 452 Isocitrate dehydrogenase yes N/A 0.541 0.362 0.648 1e-62
P33198 421 Isocitrate dehydrogenase yes N/A 0.541 0.389 0.654 1e-62
Q04467 452 Isocitrate dehydrogenase yes N/A 0.541 0.362 0.654 4e-62
O14254 439 Probable isocitrate dehyd yes N/A 0.570 0.394 0.634 6e-62
>sp|P79089|IDHP_ASPNG Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1 Back     alignment and function desciption
 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 140/174 (80%)

Query: 129 RIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEF 188
           R ++I   +DV+  YYDLGL +RD T+DQVTV+AA AIKK+ VG+KCATITPDEARV+EF
Sbjct: 116 REKLILPYLDVDLKYYDLGLEYRDQTDDQVTVEAAEAIKKYGVGVKCATITPDEARVEEF 175

Query: 189 KLKKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIV 248
           KLKKMWLSPNGTIRNILGGTVFREPII   IP++VPGW   I+IGRHA GDQY+ATD ++
Sbjct: 176 KLKKMWLSPNGTIRNILGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVI 235

Query: 249 DKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSFI 302
             PGK+ELVYT   G+ +T KV++F+  G+A   YNT ESI  FAH+SFQ++ +
Sbjct: 236 PGPGKLELVYTPVNGEPETVKVYDFQGGGIAQTQYNTDESIRGFAHASFQMALL 289

Aspergillus niger (taxid: 5061)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|O13285|IDH1_CANTR Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1 Back     alignment and function description
>sp|Q75JR2|IDHP_DICDI Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1 Back     alignment and function description
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Back     alignment and function description
>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 Back     alignment and function description
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 Back     alignment and function description
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 Back     alignment and function description
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|O14254|IDHP_SCHPO Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=idp1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
357608729 455 NADPH-specific isocitrate dehydrogenase 0.778 0.518 0.588 3e-81
193580190 448 PREDICTED: isocitrate dehydrogenase [NAD 0.656 0.444 0.552 2e-77
238580155 414 isocitrate dehydrogenase [Actias selene] 0.663 0.485 0.544 1e-75
91083633 436 PREDICTED: similar to isocitrate dehydro 0.650 0.451 0.556 2e-75
151301209 435 NADPH-specific isocitrate dehydrogenase 0.663 0.462 0.544 5e-75
87248165 435 isocitrate dehydrogenase precursor [Bomb 0.663 0.462 0.529 4e-73
332374718 435 unknown [Dendroctonus ponderosae] 0.663 0.462 0.529 2e-72
380690645221 NADPH-specific isocitrate dehydrogenase 0.564 0.773 0.742 2e-71
312385882268 hypothetical protein AND_00211 [Anophele 0.564 0.638 0.725 8e-71
157133019323 nadp-specific isocitrate dehydrogenase [ 0.564 0.529 0.713 8e-71
>gi|357608729|gb|EHJ66121.1| NADPH-specific isocitrate dehydrogenase [Danaus plexippus] Back     alignment and taxonomy information
 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/265 (58%), Positives = 188/265 (70%), Gaps = 29/265 (10%)

Query: 46  MDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQC 105
           MDGDEMTRIIWE IKEKLIFPYVK  +  + ++     L  P +                
Sbjct: 1   MDGDEMTRIIWEKIKEKLIFPYVK--LDCLYYD-----LGLPHRD-------------AT 40

Query: 106 SDKAKMFFLSSSLKHGFMYFMAS------RIQIISNIID---VECLYYDLGLPHRDATED 156
           +D+  +    + LKH      A+      R++   +  D   ++CLYYDLGLPHRDAT D
Sbjct: 41  NDQVTIDAAHAILKHNVGIKCATITPDEQRVEGWKDKADDLELDCLYYDLGLPHRDATND 100

Query: 157 QVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIIC 216
           QVT+DAA AI KHNVGIKCATITPDE RV+EFKLKKMWLSPNGTIRNILGGTVFREPI+C
Sbjct: 101 QVTIDAAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILC 160

Query: 217 KNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTP 276
           K+IP++VPGWTN+IVIGRHAHGDQYKA D ++ KPGKVE+VYT   G V    +++FK+P
Sbjct: 161 KSIPRVVPGWTNAIVIGRHAHGDQYKAQDFVIAKPGKVEMVYTAADGSVDKRLLYDFKSP 220

Query: 277 GVALAMYNTTESIESFAHSSFQVSF 301
           GV   MYNT ESI++FAHSSFQV+ 
Sbjct: 221 GVVQGMYNTDESIQAFAHSSFQVAL 245

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|193580190|ref|XP_001943698.1| PREDICTED: isocitrate dehydrogenase [NADP], mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|238580155|gb|ACR46834.1| isocitrate dehydrogenase [Actias selene] Back     alignment and taxonomy information
>gi|91083633|ref|XP_970446.1| PREDICTED: similar to isocitrate dehydrogenase [Tribolium castaneum] gi|270007851|gb|EFA04299.1| hypothetical protein TcasGA2_TC014590 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|151301209|ref|NP_001093090.1| NADPH-specific isocitrate dehydrogenase [Bombyx mori] gi|95104535|gb|ABF51294.1| NADPH-specific isocitrate dehydrogenase [Bombyx mori] Back     alignment and taxonomy information
>gi|87248165|gb|ABD36135.1| isocitrate dehydrogenase precursor [Bombyx mori] Back     alignment and taxonomy information
>gi|332374718|gb|AEE62500.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|380690645|gb|AFD93391.1| NADPH-specific isocitrate dehydrogenase 2, partial [Cydia pomonella] Back     alignment and taxonomy information
>gi|312385882|gb|EFR30274.1| hypothetical protein AND_00211 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|157133019|ref|XP_001662742.1| nadp-specific isocitrate dehydrogenase [Aedes aegypti] gi|108870975|gb|EAT35200.1| AAEL012614-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
DICTYBASE|DDB_G0272210 428 idhM "isocitrate dehydrogenase 0.554 0.392 0.654 3.7e-72
ZFIN|ZDB-GENE-031118-95 449 idh2 "isocitrate dehydrogenase 0.567 0.383 0.645 2e-71
CGD|CAL0003500 433 IDP1 [Candida albicans (taxid: 0.561 0.392 0.666 2e-71
MGI|MGI:96414 452 Idh2 "isocitrate dehydrogenase 0.541 0.362 0.666 3.3e-71
RGD|1597139 452 Idh2 "isocitrate dehydrogenase 0.541 0.362 0.666 3.3e-71
UNIPROTKB|P48735 452 IDH2 "Isocitrate dehydrogenase 0.534 0.358 0.656 6.8e-71
UNIPROTKB|Q4R502 452 IDH2 "Isocitrate dehydrogenase 0.534 0.358 0.656 6.8e-71
UNIPROTKB|F1SK00 413 IDH2 "Isocitrate dehydrogenase 0.534 0.392 0.662 6.8e-71
UNIPROTKB|P33198 421 IDH2 "Isocitrate dehydrogenase 0.534 0.384 0.662 6.8e-71
UNIPROTKB|Q04467 452 IDH2 "Isocitrate dehydrogenase 0.534 0.358 0.662 1.4e-70
DICTYBASE|DDB_G0272210 idhM "isocitrate dehydrogenase (NADP+)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 603 (217.3 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
 Identities = 110/168 (65%), Positives = 136/168 (80%)

Query:   131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
             ++I   +D+   YYDLGLP+RDAT DQVT+DAA AIK+  +G+KCATITPDEARVKEF L
Sbjct:    52 KLIFPYVDITPEYYDLGLPNRDATNDQVTIDAANAIKRAKIGVKCATITPDEARVKEFGL 111

Query:   191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
             K+MW SPNGTIRNIL GTVFR PIICKN+P +VPGW   I+IGRHAHGDQYKATD +V+ 
Sbjct:   112 KEMWKSPNGTIRNILDGTVFRGPIICKNLPLLVPGWKKPIIIGRHAHGDQYKATDFVVNG 171

Query:   251 PGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQ 298
             PGK+E+++T +QG+     +++FK  GVA+ MYNTT SI +FAHS FQ
Sbjct:   172 PGKLEMIFTPSQGEPIKKVIYDFKGSGVAMGMYNTTSSITAFAHSCFQ 219
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0006102 "isocitrate metabolic process" evidence=IEA;ISS
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA;ISS
GO:0000287 "magnesium ion binding" evidence=IEA;ISS
GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS
GO:0005739 "mitochondrion" evidence=IEA;ISS
GO:0046872 "metal ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA
GO:0006097 "glyoxylate cycle" evidence=IEA
GO:0044351 "macropinocytosis" evidence=RCA
ZFIN|ZDB-GENE-031118-95 idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
CGD|CAL0003500 IDP1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
MGI|MGI:96414 Idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1597139 Idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P48735 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R502 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|F1SK00 IDH2 "Isocitrate dehydrogenase [NADP]" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P33198 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q04467 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P54071IDHP_MOUSE1, ., 1, ., 1, ., 4, 20.66660.54120.3628yesN/A
Q04467IDHP_BOVIN1, ., 1, ., 1, ., 4, 20.65450.54120.3628yesN/A
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.62720.53790.3985yesN/A
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.62720.53790.3985yesN/A
P48735IDHP_HUMAN1, ., 1, ., 1, ., 4, 20.64840.54120.3628yesN/A
Q06197IDHC_SOYBN1, ., 1, ., 1, ., 4, 20.60690.56430.4140yesN/A
Q75JR2IDHP_DICDI1, ., 1, ., 1, ., 4, 20.66460.54120.3831yesN/A
P21954IDHP_YEAST1, ., 1, ., 1, ., 4, 20.63580.56100.3971yesN/A
P33198IDHP_PIG1, ., 1, ., 1, ., 4, 20.65450.54120.3895yesN/A
P56574IDHP_RAT1, ., 1, ., 1, ., 4, 20.66660.54120.3628yesN/A
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.63420.57090.3940yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
PTZ00435 413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 1e-110
PRK08299 402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 1e-108
TIGR00127 409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 2e-92
PLN03065 483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 8e-91
PLN00103 410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 3e-87
COG0538 407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 6e-50
PTZ00435 413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 6e-16
pfam00180 349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 3e-15
PRK08299 402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 1e-14
PLN03065 483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 4e-13
PLN00103 410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 2e-12
PLN00096 393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 2e-12
COG0538 407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 6e-05
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information 
 Score =  325 bits (834), Expect = e-110
 Identities = 116/163 (71%), Positives = 130/163 (79%), Gaps = 1/163 (0%)

Query: 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS 196
           +DV   YYDL + +RD T+D+VTVDAA AIKKH VGIKCATITPDEARVKEF LKKMW S
Sbjct: 37  LDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEARVKEFNLKKMWKS 96

Query: 197 PNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVEL 256
           PNGTIRNIL GTVFREPII KNIP++VPGW   IVIGRHA GDQYKATD +VD PGK+EL
Sbjct: 97  PNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLEL 156

Query: 257 VYT-DNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQ 298
           V+T  +  + Q   VF+FK  GVA+ MYNT ESIE FA S FQ
Sbjct: 157 VFTPADGSEPQRVDVFDFKGGGVAMGMYNTDESIEGFARSCFQ 199

Length = 413
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 303
KOG1526|consensus 422 100.0
PLN00096 393 isocitrate dehydrogenase (NADP+); Provisional 100.0
PLN03065 483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PTZ00435 413 isocitrate dehydrogenase; Provisional 100.0
TIGR00127 409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
COG0538 407 Icd Isocitrate dehydrogenases [Energy production a 100.0
PLN00103 410 isocitrate dehydrogenase (NADP+); Provisional 100.0
PRK08299 402 isocitrate dehydrogenase; Validated 100.0
TIGR00183 416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 99.39
PRK06451 412 isocitrate dehydrogenase; Validated 99.14
PRK07006 409 isocitrate dehydrogenase; Reviewed 99.13
TIGR00175 333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 99.03
TIGR02088 322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 98.98
PF00180 348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 98.83
PLN00118 372 isocitrate dehydrogenase (NAD+) 98.6
PRK14025 330 multifunctional 3-isopropylmalate dehydrogenase/D- 97.64
PRK03437 344 3-isopropylmalate dehydrogenase; Provisional 97.3
PRK08997 334 isocitrate dehydrogenase; Provisional 97.15
PLN00123 360 isocitrate dehydrogenase (NAD+) 96.82
TIGR00169 349 leuB 3-isopropylmalate dehydrogenase. This model w 96.82
PRK09222 482 isocitrate dehydrogenase; Validated 96.68
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 96.68
TIGR02089 352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 96.55
PRK00772 358 3-isopropylmalate dehydrogenase; Provisional 96.52
PRK08194 352 tartrate dehydrogenase; Provisional 96.09
PRK07362 474 isocitrate dehydrogenase; Validated 94.86
PLN02329 409 3-isopropylmalate dehydrogenase 93.87
COG0473 348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 91.25
KOG0785|consensus 365 91.01
KOG0784|consensus 375 89.61
>KOG1526|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.5e-106  Score=757.76  Aligned_cols=202  Identities=71%  Similarity=1.143  Sum_probs=198.4

Q ss_pred             ccccceeecCCeEEecCcchhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhcCcchhhhhhhhhhhccccccchhhhh
Q psy12302         32 ATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKM  111 (303)
Q Consensus        32 ~~~~kI~v~nPvVemdGDEMTRiiw~~IkekLI~Pyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (303)
                      +.++||+|+||||||||||||||||+.||||||+|||                                           
T Consensus        10 ~~~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyl-------------------------------------------   46 (422)
T KOG1526|consen   10 SGMSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYL-------------------------------------------   46 (422)
T ss_pred             chhceeeccCCeEEecccHHHHHHHHHHHhhccccee-------------------------------------------
Confidence            3478999999999999999999999999999999999                                           


Q ss_pred             hhhhcccccchhhhhhhhhhhhccccccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcc
Q psy12302        112 FFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLK  191 (303)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~q~i~~~iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LK  191 (303)
                                                |++++|||||++|||+||||||+|||+|++|||||||||||||||+||+||+||
T Consensus        47 --------------------------dldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDEaRv~Ef~Lk  100 (422)
T KOG1526|consen   47 --------------------------DLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDEARVEEFNLK  100 (422)
T ss_pred             --------------------------eeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCcHHHHHHhhhH
Confidence                                      999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCchhhhhhhcCCeEeecceeecCCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCC-ceEEEEE
Q psy12302        192 KMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQG-KVQTFKV  270 (303)
Q Consensus       192 kmw~SPNGtIRniLgGTVFRePIi~knIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g-~~~~~~v  270 (303)
                      |||+||||||||||||||||||||||||||+||||++||+||||||||||||||++++|||+++|+|+|.+| .+.+++|
T Consensus       101 kMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~dg~~~~~~~V  180 (422)
T KOG1526|consen  101 KMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSDGTQKVTLKV  180 (422)
T ss_pred             HHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecCCCCcceeEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 5889999


Q ss_pred             EeecCCCeEEEeccChhhHHHHHHHhhhchhc
Q psy12302        271 FEFKTPGVALAMYNTTESIESFAHSSFQVSFI  302 (303)
Q Consensus       271 ~~fk~~GVal~myNt~eSI~~FAhs~Fq~al~  302 (303)
                      |+|+++|++++|||+++||++|||||||+||.
T Consensus       181 ~~f~~~G~~~~m~~~dds~~~FAhssf~~Al~  212 (422)
T KOG1526|consen  181 YDFKGSGVAAMMYNTDDSIRGFAHSSFQYALQ  212 (422)
T ss_pred             EecCCCceeEEEeeccchhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999985

>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0785|consensus Back     alignment and domain information
>KOG0784|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
1lwd_A 413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 1e-63
2qfv_A 427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 5e-62
1t09_A 414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 5e-61
3mas_B 419 Crystal Structure Of Heterodimeric R132h Mutant Of 6e-61
2cmj_A 410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 2e-60
3inm_A 425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 3e-60
3map_A 422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 3e-60
4hcx_A 409 Structure Of Icdh-1 From M.tuberculosis Complexed W 2e-58
3us8_A 427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 2e-57
4aoy_A 402 Open Ctidh. The Complex Structures Of Isocitrate De 1e-48
1zor_A 399 Isocitrate Dehydrogenase From The Hyperthermophile 1e-45
2uxq_A 402 Isocitrate Dehydrogenase From The Psychrophilic Bac 7e-43
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  239 bits (611), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 133/165 (80%), Gaps = 1/165 (0%)
Query: 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS 196
           +DV+  Y+DLGLP+RD T DQVT+D+A+A +K++V +KCATITPDEARV+EFKLKKMW S
Sbjct: 36  VDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKS 95
Query: 197 PNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVEL 256
           PNGTIRNILGGTVFREPIICKNIP++VPGWT  I IGRHAHGDQYKATD +VD+ G  ++
Sbjct: 96  PNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKI 155
Query: 257 VYTDNQG-KVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVS 300
           V+T   G   + ++V+ F   GV + MYNT ESI  FAHS FQ +
Sbjct: 156 VFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYA 200
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
2uxq_A 402 Isocitrate dehydrogenase native; psychrophilic, co 1e-69
2uxq_A 402 Isocitrate dehydrogenase native; psychrophilic, co 8e-14
3us8_A 427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 5e-69
3us8_A 427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 1e-15
4aoy_A 402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 8e-69
4aoy_A 402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 1e-14
2qfy_A 427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 9e-69
2qfy_A 427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 9e-15
1lwd_A 413 Isocitrate dehydrogenase; tricarboxylic acid cycle 4e-68
1lwd_A 413 Isocitrate dehydrogenase; tricarboxylic acid cycle 8e-15
1zor_A 399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 6e-65
1zor_A 399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 8e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
 Score =  220 bits (562), Expect = 1e-69
 Identities = 80/171 (46%), Positives = 112/171 (65%)

Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
           +++   ID++  YYDLG+  RD T DQ+T+DAA AIKK+ VG+K ATITP++ RV+E+ L
Sbjct: 28  KLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGL 87

Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
           K+ W SPN T+R +L GTVFR+PI+ KNI   V  W   IV+GRHA+GD YK  ++  + 
Sbjct: 88  KEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEA 147

Query: 251 PGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSF 301
            GK+E+V TD  GK     + E   P +   ++NT  SI  FA + F+ S 
Sbjct: 148 GGKLEIVVTDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSL 198
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
4aoy_A 402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
3us8_A 427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
1lwd_A 413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
1zor_A 399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
2qfy_A 427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
2uxq_A 402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1hqs_A 423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 99.87
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 99.8
3blx_B 354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 99.76
2e0c_A 409 409AA long hypothetical NADP-dependent isocitrate 99.75
1tyo_A 435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 99.74
1w0d_A 337 3-isopropylmalate dehydrogenase; oxidoreductase, l 99.74
2iv0_A 412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 99.72
1x0l_A 333 Homoisocitrate dehydrogenase; oxidoreductase, deca 99.69
3blx_A 349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 99.68
2d4v_A 429 Isocitrate dehydrogenase; alpha and beta protein, 99.68
2y3z_A 359 3-isopropylmalate dehydrogenase; oxidoreductase, L 99.67
1wpw_A 336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 99.66
3flk_A 364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 99.62
1cnz_A 363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 99.59
1vlc_A 366 3-isopropylmalate dehydrogenase; TM0556, structura 99.58
3ty4_A 366 Probable homoisocitrate dehydrogenase; B-hydroxyac 99.58
1a05_A 358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 99.57
3dms_A 427 Isocitrate dehydrogenase [NADP]; struc genomics, s 99.49
3vmk_A 375 3-isopropylmalate dehydrogenase; oxidoreductase, d 99.37
3r8w_A 405 3-isopropylmalate dehydrogenase 2, chloroplastic; 99.08
3u1h_A 390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 98.82
3udu_A 361 3-isopropylmalate dehydrogenase; structural genomi 98.71
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
Probab=100.00  E-value=1e-50  Score=379.85  Aligned_cols=200  Identities=56%  Similarity=0.916  Sum_probs=188.9

Q ss_pred             ccceeecCCeEEecCcchhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhcCcchhhhhhhhhhhccccccchhhhhhh
Q psy12302         34 DSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFF  113 (303)
Q Consensus        34 ~~kI~v~nPvVemdGDEMTRiiw~~IkekLI~Pyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (303)
                      |+||+|++|||+|+||||+|++|+.||+.++.|++                                             
T Consensus         1 ~~~i~~~~~i~~i~GDei~~e~~~~i~~v~~~~~~---------------------------------------------   35 (402)
T 4aoy_A            1 MSKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYI---------------------------------------------   35 (402)
T ss_dssp             -CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTE---------------------------------------------
T ss_pred             CCcccccCcEEEECCCchHHHHHHHHHHHHHhcCC---------------------------------------------
Confidence            57999999999999999999999999999999999                                             


Q ss_pred             hhcccccchhhhhhhhhhhhccccccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccc
Q psy12302        114 LSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKM  193 (303)
Q Consensus       114 ~~~~~~~~~~~~~~~~~q~i~~~iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkm  193 (303)
                                              +++++|||||.++||+|+++++.|+++|+|+++|++|||++||+.+|++||+|+++
T Consensus        36 ------------------------~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~~~~~~~l~~~   91 (402)
T 4aoy_A           36 ------------------------ELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEYNLKKM   91 (402)
T ss_dssp             ------------------------ECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHTTCSSC
T ss_pred             ------------------------CeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCcccccccccccc
Confidence                                    99999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhhhhhhcCCeEeecceeecCCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEee
Q psy12302        194 WLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEF  273 (303)
Q Consensus       194 w~SPNGtIRniLgGTVFRePIi~knIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~f  273 (303)
                      |+|||++||+.||++++|+|+.++++|..+++|..+|+|.||+.||+|.+.|+.++++|+++++|++.+|..++..+++|
T Consensus        92 ~~s~n~~LR~~Ldlyan~rPv~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~  171 (402)
T 4aoy_A           92 WKSPNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENGEVSRQTIHEF  171 (402)
T ss_dssp             CCCHHHHHHHHHTCEEEEEECCCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTSCEEEEEEEEE
T ss_pred             ccChHHHHHHHhCCeEEeeeEeccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCCcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997788889999


Q ss_pred             cCCCeEEEeccChhhHHHHHHHhhhchhc
Q psy12302        274 KTPGVALAMYNTTESIESFAHSSFQVSFI  302 (303)
Q Consensus       274 k~~GVal~myNt~eSI~~FAhs~Fq~al~  302 (303)
                      +++||+++|+||.++++.+||.+|++|+.
T Consensus       172 ~~~gv~~~~~~t~~~~eRiar~AF~~A~~  200 (402)
T 4aoy_A          172 DGPGVIMGMHNTDKSIRSFARACFNYALD  200 (402)
T ss_dssp             SSCEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             cCCeeEEEEEecHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999973
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 303
d1lwda_ 413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-41
d1lwda_ 413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 2e-13
d1t0la_ 414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 2e-40
d1t0la_ 414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 4e-13
d1hqsa_ 423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 8e-07
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  146 bits (369), Expect = 1e-41
 Identities = 109/169 (64%), Positives = 135/169 (79%), Gaps = 1/169 (0%)

Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
           ++I   +DV+  Y+DLGLP+RD T DQVT+D+A+A +K++V +KCATITPDEARV+EFKL
Sbjct: 30  KLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKL 89

Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
           KKMW SPNGTIRNILGGTVFREPIICKNIP++VPGWT  I IGRHAHGDQYKATD +VD+
Sbjct: 90  KKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDR 149

Query: 251 PGKVELVYTDNQG-KVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQ 298
            G  ++V+T   G   + ++V+ F   GV + MYNT ESI  FAHS FQ
Sbjct: 150 AGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQ 198
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
d1lwda_ 413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1t0la_ 414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1hqsa_ 423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 99.28
d1pb1a_ 416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 99.28
d1v53a1 356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 99.22
d1cnza_ 363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 99.13
d1a05a_ 357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 99.02
d1wpwa_ 336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 98.9
d1vlca_ 362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 98.84
d1g2ua_ 345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 97.39
d1w0da_ 337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 96.55
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2e-42  Score=320.51  Aligned_cols=201  Identities=67%  Similarity=1.129  Sum_probs=192.6

Q ss_pred             cccceeecCCeEEecCcchhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhcCcchhhhhhhhhhhccccccchhhhhh
Q psy12302         33 TDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMF  112 (303)
Q Consensus        33 ~~~kI~v~nPvVemdGDEMTRiiw~~IkekLI~Pyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (303)
                      .++||+|++|+|+|+||||||++|+.||++|++||+                                            
T Consensus         1 ~~~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~--------------------------------------------   36 (413)
T d1lwda_           1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHV--------------------------------------------   36 (413)
T ss_dssp             CCCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTE--------------------------------------------
T ss_pred             CCCcccccCCEEEecCccHHHHHHHHHHHHHccCCC--------------------------------------------
Confidence            368999999999999999999999999999999999                                            


Q ss_pred             hhhcccccchhhhhhhhhhhhccccccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhccc
Q psy12302        113 FLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKK  192 (303)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~q~i~~~iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKk  192 (303)
                                               |++++|||+|.++||+|+|+++.||++|+|+|++++|||++||++.++.++.+++
T Consensus        37 -------------------------di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~~~~~~~~~~~~   91 (413)
T d1lwda_          37 -------------------------DVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKK   91 (413)
T ss_dssp             -------------------------ECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHHTCSS
T ss_pred             -------------------------CceEEEEeCCHHHHHHhCCcCcHHHHHHHHHcCEEEECCcCCCCccccccccccc
Confidence                                     9999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCchhhhhhhcCCeEeecceeecCCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCC-ceEEEEEE
Q psy12302        193 MWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQG-KVQTFKVF  271 (303)
Q Consensus       193 mw~SPNGtIRniLgGTVFRePIi~knIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g-~~~~~~v~  271 (303)
                      .|+|||+++|+.|++.+.++|+.+.+.++..++|+.++||.||+.+|.|...|..+..++...++++...| .......+
T Consensus        92 ~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~~g~~~~~~~~~  171 (413)
T d1lwda_          92 MWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVY  171 (413)
T ss_dssp             CCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTCCCCEEEEEE
T ss_pred             cccchhhhHHHhcCCceEEecccccCCCCcCCCCCCCeEEeeccccceeeccceeccCcccceeEEeccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999888888899988866 56677889


Q ss_pred             eecCCCeEEEeccChhhHHHHHHHhhhchhc
Q psy12302        272 EFKTPGVALAMYNTTESIESFAHSSFQVSFI  302 (303)
Q Consensus       272 ~fk~~GVal~myNt~eSI~~FAhs~Fq~al~  302 (303)
                      ++.+.+++..++++..+++.+||.+|++|..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~ria~~af~~a~~  202 (413)
T d1lwda_         172 NFPAGGVGMGMYNTDESISGFAHSCFQYAIQ  202 (413)
T ss_dssp             EESSCEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             cccccccceeeccccchhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999863
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure